https://launchpad.net/ubuntu/+source/ivar/1.3.1+dfsg-4/+build/22110960 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-024 4.15.0-158-generic #166-Ubuntu SMP Fri Sep 17 19:34:37 UTC 2021 ppc64le Buildd toolchain package versions: launchpad-buildd_202~502~ubuntu18.04.1 python3-lpbuildd_202~502~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 24 Sep 10:41:34 ntpdate[2041]: adjust time server 10.211.37.1 offset 0.000653 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=impish --arch=ppc64el PACKAGEBUILD-22110960 --image-type chroot /home/buildd/filecache-default/24da345c42c7b7d23c5463cf41fef66fd18cba1d Creating target for build PACKAGEBUILD-22110960 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=impish --arch=ppc64el PACKAGEBUILD-22110960 Starting target for build PACKAGEBUILD-22110960 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=impish --arch=ppc64el PACKAGEBUILD-22110960 'deb http://ftpmaster.internal/ubuntu impish main universe' 'deb http://ftpmaster.internal/ubuntu impish-security main universe' 'deb http://ftpmaster.internal/ubuntu impish-updates main universe' 'deb http://ftpmaster.internal/ubuntu impish-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22110960 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=impish --arch=ppc64el PACKAGEBUILD-22110960 Updating target for build PACKAGEBUILD-22110960 Get:1 http://ftpmaster.internal/ubuntu impish InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu impish-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu impish-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu impish-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main ppc64el Packages [1361 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu impish/universe ppc64el Packages [13.2 MB] Get:8 http://ftpmaster.internal/ubuntu impish/universe Translation-en [5459 kB] Get:9 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el Packages [54.6 kB] Get:10 http://ftpmaster.internal/ubuntu impish-proposed/main Translation-en [20.4 kB] Get:11 http://ftpmaster.internal/ubuntu impish-proposed/universe ppc64el Packages [98.9 kB] Get:12 http://ftpmaster.internal/ubuntu impish-proposed/universe Translation-en [42.2 kB] Fetched 21.3 MB in 4s (5198 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-10 libstdc++-10-dev Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libffi8ubuntu1* The following NEW packages will be installed: cpp-11 g++-11 gcc-11 libffi8 libgcc-11-dev libstdc++-11-dev The following packages will be upgraded: advancecomp apt base-files base-passwd bash binutils binutils-common binutils-powerpc64le-linux-gnu bsdutils build-essential cpp cpp-10 dash debconf diffutils dpkg dpkg-dev e2fsprogs findutils g++ g++-10 gcc gcc-10 gcc-10-base gcc-11-base gpg gpg-agent gpgconf gpgv grep gzip libapparmor1 libapt-pkg6.0 libasan6 libassuan0 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdevmapper1.02.1 libdpkg-perl libext2fs2 libgcc-10-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgssapi-krb5-2 libhogweed6 libidn2-0 libisl23 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 liblz4-1 liblzma5 libmount1 libnettle8 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.32 libprocps8 libquadmath0 libreadline8 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libtirpc-common libtirpc-dev libtirpc3 libtsan0 libubsan1 libudev1 libunistring2 libuuid1 libzstd1 linux-libc-dev login logsave lto-disabled-list mount openssl passwd perl perl-base perl-modules-5.32 pinentry-curses pkgbinarymangler procps readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils usrmerge util-linux xz-utils zlib1g 124 upgraded, 6 newly installed, 1 to remove and 0 not upgraded. Need to get 250 MB of archives. After this operation, 475 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu impish/main ppc64el libcrypt-dev ppc64el 1:4.4.18-4ubuntu1 [131 kB] Get:2 http://ftpmaster.internal/ubuntu impish/main ppc64el libnsl-dev ppc64el 1.3.0-2 [73.4 kB] Get:3 http://ftpmaster.internal/ubuntu impish/main ppc64el libc6-dev ppc64el 2.34-0ubuntu2 [2025 kB] Get:4 http://ftpmaster.internal/ubuntu impish/main ppc64el libc-dev-bin ppc64el 2.34-0ubuntu2 [21.3 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main ppc64el libcrypt1 ppc64el 1:4.4.18-4ubuntu1 [97.1 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main ppc64el libtirpc-common all 1.3.2-2 [7674 B] Get:7 http://ftpmaster.internal/ubuntu impish/main ppc64el libtirpc-dev ppc64el 1.3.2-2 [223 kB] Get:8 http://ftpmaster.internal/ubuntu impish/main ppc64el libk5crypto3 ppc64el 1.18.3-6 [120 kB] Get:9 http://ftpmaster.internal/ubuntu impish/main ppc64el libkrb5support0 ppc64el 1.18.3-6 [37.2 kB] Get:10 http://ftpmaster.internal/ubuntu impish/main ppc64el libkrb5-3 ppc64el 1.18.3-6 [434 kB] Get:11 http://ftpmaster.internal/ubuntu impish/main ppc64el libgssapi-krb5-2 ppc64el 1.18.3-6 [183 kB] Get:12 http://ftpmaster.internal/ubuntu impish/main ppc64el libcom-err2 ppc64el 1.46.3-1ubuntu3 [11.2 kB] Get:13 http://ftpmaster.internal/ubuntu impish/main ppc64el libperl5.32 ppc64el 5.32.1-3ubuntu3 [4822 kB] Get:14 http://ftpmaster.internal/ubuntu impish/main ppc64el perl ppc64el 5.32.1-3ubuntu3 [227 kB] Get:15 http://ftpmaster.internal/ubuntu impish/main ppc64el perl-base ppc64el 5.32.1-3ubuntu3 [1830 kB] Get:16 http://ftpmaster.internal/ubuntu impish/main ppc64el perl-modules-5.32 all 5.32.1-3ubuntu3 [2945 kB] Get:17 http://ftpmaster.internal/ubuntu impish/main ppc64el libdb5.3 ppc64el 5.3.28+dfsg1-0.8ubuntu1 [719 kB] Get:18 http://ftpmaster.internal/ubuntu impish/main ppc64el zlib1g ppc64el 1:1.2.11.dfsg-2ubuntu7 [72.2 kB] Get:19 http://ftpmaster.internal/ubuntu impish/main ppc64el debconf all 1.5.77 [121 kB] Get:20 http://ftpmaster.internal/ubuntu impish/main ppc64el libc6 ppc64el 2.34-0ubuntu2 [3225 kB] Get:21 http://ftpmaster.internal/ubuntu impish/main ppc64el libc-bin ppc64el 2.34-0ubuntu2 [1056 kB] Get:22 http://ftpmaster.internal/ubuntu impish/main ppc64el libssl1.1 ppc64el 1.1.1l-1ubuntu1 [1588 kB] Get:23 http://ftpmaster.internal/ubuntu impish/main ppc64el libtirpc3 ppc64el 1.3.2-2 [101 kB] Get:24 http://ftpmaster.internal/ubuntu impish/main ppc64el libnsl2 ppc64el 1.3.0-2 [43.7 kB] Get:25 http://ftpmaster.internal/ubuntu impish/main ppc64el linux-libc-dev ppc64el 5.13.0-16.16 [1267 kB] Get:26 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el libasan6 ppc64el 11.2.0-7ubuntu2 [2303 kB] Get:27 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el libubsan1 ppc64el 11.2.0-7ubuntu2 [947 kB] Get:28 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el libtsan0 ppc64el 11.2.0-7ubuntu2 [2283 kB] Get:29 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el libquadmath0 ppc64el 11.2.0-7ubuntu2 [166 kB] Get:30 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el liblsan0 ppc64el 11.2.0-7ubuntu2 [997 kB] Get:31 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el libitm1 ppc64el 11.2.0-7ubuntu2 [33.1 kB] Get:32 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el libgomp1 ppc64el 11.2.0-7ubuntu2 [130 kB] Get:33 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el gcc-11-base ppc64el 11.2.0-7ubuntu2 [20.6 kB] Get:34 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el libgcc-s1 ppc64el 11.2.0-7ubuntu2 [34.7 kB] Get:35 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el libcc1-0 ppc64el 11.2.0-7ubuntu2 [48.1 kB] Get:36 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el libatomic1 ppc64el 11.2.0-7ubuntu2 [10.7 kB] Get:37 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el libstdc++6 ppc64el 11.2.0-7ubuntu2 [759 kB] Get:38 http://ftpmaster.internal/ubuntu impish/main ppc64el base-files ppc64el 11.1ubuntu3 [61.1 kB] Get:39 http://ftpmaster.internal/ubuntu impish/main ppc64el bash ppc64el 5.1-3ubuntu1 [833 kB] Get:40 http://ftpmaster.internal/ubuntu impish/main ppc64el bsdutils ppc64el 1:2.36.1-8ubuntu1 [86.5 kB] Get:41 http://ftpmaster.internal/ubuntu impish/main ppc64el dpkg ppc64el 1.20.9ubuntu2 [1325 kB] Get:42 http://ftpmaster.internal/ubuntu impish/main ppc64el dash ppc64el 0.5.11+git20210120+802ebd4-1 [101 kB] Get:43 http://ftpmaster.internal/ubuntu impish/main ppc64el diffutils ppc64el 1:3.8-0ubuntu1 [241 kB] Get:44 http://ftpmaster.internal/ubuntu impish/main ppc64el findutils ppc64el 4.8.0-1ubuntu2 [382 kB] Get:45 http://ftpmaster.internal/ubuntu impish/main ppc64el grep ppc64el 3.7-0ubuntu1 [213 kB] Get:46 http://ftpmaster.internal/ubuntu impish/main ppc64el gzip ppc64el 1.10-4ubuntu1 [103 kB] Get:47 http://ftpmaster.internal/ubuntu impish/main ppc64el login ppc64el 1:4.8.1-1ubuntu9 [226 kB] Get:48 http://ftpmaster.internal/ubuntu impish/main ppc64el util-linux ppc64el 2.36.1-8ubuntu1 [1080 kB] Get:49 http://ftpmaster.internal/ubuntu impish/main ppc64el base-passwd ppc64el 3.5.51 [50.1 kB] Get:50 http://ftpmaster.internal/ubuntu impish/main ppc64el sysvinit-utils ppc64el 2.96-7ubuntu1 [21.4 kB] Get:51 http://ftpmaster.internal/ubuntu impish/main ppc64el libgcrypt20 ppc64el 1.8.7-5ubuntu2 [559 kB] Get:52 http://ftpmaster.internal/ubuntu impish/main ppc64el liblz4-1 ppc64el 1.9.3-2 [66.7 kB] Get:53 http://ftpmaster.internal/ubuntu impish/main ppc64el liblzma5 ppc64el 5.2.5-2 [113 kB] Get:54 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el systemd-sysv ppc64el 248.3-1ubuntu7 [10.5 kB] Get:55 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el systemd-timesyncd ppc64el 248.3-1ubuntu7 [32.0 kB] Get:56 http://ftpmaster.internal/ubuntu impish/main ppc64el libapparmor1 ppc64el 3.0.3-0ubuntu1 [44.1 kB] Get:57 http://ftpmaster.internal/ubuntu impish/main ppc64el libaudit-common all 1:3.0-2ubuntu2 [4788 B] Get:58 http://ftpmaster.internal/ubuntu impish/main ppc64el libaudit1 ppc64el 1:3.0-2ubuntu2 [43.2 kB] Get:59 http://ftpmaster.internal/ubuntu impish/main ppc64el libblkid1 ppc64el 2.36.1-8ubuntu1 [122 kB] Get:60 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el libudev1 ppc64el 248.3-1ubuntu7 [95.5 kB] Get:61 http://ftpmaster.internal/ubuntu impish/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.175-2.1ubuntu1 [158 kB] Get:62 http://ftpmaster.internal/ubuntu impish/main ppc64el libuuid1 ppc64el 2.36.1-8ubuntu1 [26.4 kB] Get:63 http://ftpmaster.internal/ubuntu impish/main ppc64el libcryptsetup12 ppc64el 2:2.3.6-0ubuntu1 [297 kB] Get:64 http://ftpmaster.internal/ubuntu impish/main ppc64el libnettle8 ppc64el 3.7.3-1 [181 kB] Get:65 http://ftpmaster.internal/ubuntu impish/main ppc64el libhogweed6 ppc64el 3.7.3-1 [198 kB] Get:66 http://ftpmaster.internal/ubuntu impish/main ppc64el libunistring2 ppc64el 0.9.10-6 [514 kB] Get:67 http://ftpmaster.internal/ubuntu impish/main ppc64el libidn2-0 ppc64el 2.3.1-1 [53.6 kB] Get:68 http://ftpmaster.internal/ubuntu impish/main ppc64el libffi8 ppc64el 3.4.2-1ubuntu5 [25.1 kB] Get:69 http://ftpmaster.internal/ubuntu impish/main ppc64el libp11-kit0 ppc64el 0.23.22-1build1 [265 kB] Get:70 http://ftpmaster.internal/ubuntu impish/main ppc64el libgnutls30 ppc64el 3.7.1-5ubuntu1 [1016 kB] Get:71 http://ftpmaster.internal/ubuntu impish/main ppc64el libzstd1 ppc64el 1.4.8+dfsg-2.1 [313 kB] Get:72 http://ftpmaster.internal/ubuntu impish/main ppc64el libkmod2 ppc64el 28-1ubuntu4 [52.7 kB] Get:73 http://ftpmaster.internal/ubuntu impish/main ppc64el libmount1 ppc64el 2.36.1-8ubuntu1 [140 kB] Get:74 http://ftpmaster.internal/ubuntu impish/main ppc64el libpam0g ppc64el 1.3.1-5ubuntu11 [66.3 kB] Get:75 http://ftpmaster.internal/ubuntu impish/main ppc64el mount ppc64el 2.36.1-8ubuntu1 [117 kB] Get:76 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el systemd ppc64el 248.3-1ubuntu7 [4925 kB] Get:77 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el libsystemd0 ppc64el 248.3-1ubuntu7 [380 kB] Get:78 http://ftpmaster.internal/ubuntu impish/main ppc64el libapt-pkg6.0 ppc64el 2.3.9 [1027 kB] Get:79 http://ftpmaster.internal/ubuntu impish/main ppc64el gpgv ppc64el 2.2.20-1ubuntu4 [156 kB] Get:80 http://ftpmaster.internal/ubuntu impish/main ppc64el apt ppc64el 2.3.9 [1430 kB] Get:81 http://ftpmaster.internal/ubuntu impish/main ppc64el libpam-modules-bin ppc64el 1.3.1-5ubuntu11 [49.8 kB] Get:82 http://ftpmaster.internal/ubuntu impish/main ppc64el libpam-modules ppc64el 1.3.1-5ubuntu11 [318 kB] Get:83 http://ftpmaster.internal/ubuntu impish/main ppc64el logsave ppc64el 1.46.3-1ubuntu3 [12.1 kB] Get:84 http://ftpmaster.internal/ubuntu impish/main ppc64el libext2fs2 ppc64el 1.46.3-1ubuntu3 [254 kB] Get:85 http://ftpmaster.internal/ubuntu impish/main ppc64el e2fsprogs ppc64el 1.46.3-1ubuntu3 [648 kB] Get:86 http://ftpmaster.internal/ubuntu impish/main ppc64el libpam-runtime all 1.3.1-5ubuntu11 [38.7 kB] Get:87 http://ftpmaster.internal/ubuntu impish/main ppc64el libpcre2-8-0 ppc64el 10.37-0ubuntu2 [246 kB] Get:88 http://ftpmaster.internal/ubuntu impish/main ppc64el libsmartcols1 ppc64el 2.36.1-8ubuntu1 [59.4 kB] Get:89 http://ftpmaster.internal/ubuntu impish/main ppc64el passwd ppc64el 1:4.8.1-1ubuntu9 [838 kB] Get:90 http://ftpmaster.internal/ubuntu impish/main ppc64el libprocps8 ppc64el 2:3.3.17-5ubuntu3 [40.6 kB] Get:91 http://ftpmaster.internal/ubuntu impish/main ppc64el libss2 ppc64el 1.46.3-1ubuntu3 [13.4 kB] Get:92 http://ftpmaster.internal/ubuntu impish/main ppc64el procps ppc64el 2:3.3.17-5ubuntu3 [405 kB] Get:93 http://ftpmaster.internal/ubuntu impish/main ppc64el usrmerge all 25ubuntu1 [53.5 kB] Get:94 http://ftpmaster.internal/ubuntu impish/main ppc64el readline-common all 8.1-2 [54.1 kB] Get:95 http://ftpmaster.internal/ubuntu impish/main ppc64el libreadline8 ppc64el 8.1-2 [151 kB] Get:96 http://ftpmaster.internal/ubuntu impish/main ppc64el libsqlite3-0 ppc64el 3.35.5-1 [641 kB] Get:97 http://ftpmaster.internal/ubuntu impish/main ppc64el openssl ppc64el 1.1.1l-1ubuntu1 [666 kB] Get:98 http://ftpmaster.internal/ubuntu impish/main ppc64el xz-utils ppc64el 5.2.5-2 [87.0 kB] Get:99 http://ftpmaster.internal/ubuntu impish/main ppc64el advancecomp ppc64el 2.1-2.1ubuntu1 [231 kB] Get:100 http://ftpmaster.internal/ubuntu impish/main ppc64el libctf0 ppc64el 2.37-7ubuntu1 [109 kB] Get:101 http://ftpmaster.internal/ubuntu impish/main ppc64el libctf-nobfd0 ppc64el 2.37-7ubuntu1 [108 kB] Get:102 http://ftpmaster.internal/ubuntu impish/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.37-7ubuntu1 [2429 kB] Get:103 http://ftpmaster.internal/ubuntu impish/main ppc64el binutils ppc64el 2.37-7ubuntu1 [3174 B] Get:104 http://ftpmaster.internal/ubuntu impish/main ppc64el libbinutils ppc64el 2.37-7ubuntu1 [671 kB] Get:105 http://ftpmaster.internal/ubuntu impish/main ppc64el binutils-common ppc64el 2.37-7ubuntu1 [212 kB] Get:106 http://ftpmaster.internal/ubuntu impish/main ppc64el libisl23 ppc64el 0.24-1 [719 kB] Get:107 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el cpp-11 ppc64el 11.2.0-7ubuntu2 [46.2 MB] Get:108 http://ftpmaster.internal/ubuntu impish/main ppc64el g++ ppc64el 4:11.2.0-1ubuntu1 [1408 B] Get:109 http://ftpmaster.internal/ubuntu impish/main ppc64el gcc ppc64el 4:11.2.0-1ubuntu1 [5152 B] Get:110 http://ftpmaster.internal/ubuntu impish/main ppc64el cpp ppc64el 4:11.2.0-1ubuntu1 [27.7 kB] Get:111 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el libgcc-11-dev ppc64el 11.2.0-7ubuntu2 [1489 kB] Get:112 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el gcc-11 ppc64el 11.2.0-7ubuntu2 [53.7 MB] Get:113 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el libstdc++-11-dev ppc64el 11.2.0-7ubuntu2 [2178 kB] Get:114 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el g++-11 ppc64el 11.2.0-7ubuntu2 [50.9 MB] Get:115 http://ftpmaster.internal/ubuntu impish/main ppc64el dpkg-dev all 1.20.9ubuntu2 [937 kB] Get:116 http://ftpmaster.internal/ubuntu impish/main ppc64el libdpkg-perl all 1.20.9ubuntu2 [233 kB] Get:117 http://ftpmaster.internal/ubuntu impish/main ppc64el lto-disabled-list all 16 [12.5 kB] Get:118 http://ftpmaster.internal/ubuntu impish/main ppc64el build-essential ppc64el 12.9ubuntu1 [4744 B] Get:119 http://ftpmaster.internal/ubuntu impish-proposed/universe ppc64el g++-10 ppc64el 10.3.0-11ubuntu1 [9413 kB] Get:120 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el libstdc++-10-dev ppc64el 10.3.0-11ubuntu1 [1940 kB] Get:121 http://ftpmaster.internal/ubuntu impish-proposed/universe ppc64el gcc-10 ppc64el 10.3.0-11ubuntu1 [16.5 MB] Get:122 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el libgcc-10-dev ppc64el 10.3.0-11ubuntu1 [1455 kB] Get:123 http://ftpmaster.internal/ubuntu impish-proposed/universe ppc64el cpp-10 ppc64el 10.3.0-11ubuntu1 [8185 kB] Get:124 http://ftpmaster.internal/ubuntu impish-proposed/main ppc64el gcc-10-base ppc64el 10.3.0-11ubuntu1 [20.8 kB] Get:125 http://ftpmaster.internal/ubuntu impish/main ppc64el libassuan0 ppc64el 2.5.5-1 [42.5 kB] Get:126 http://ftpmaster.internal/ubuntu impish/main ppc64el pinentry-curses ppc64el 1.1.1-1 [34.3 kB] Get:127 http://ftpmaster.internal/ubuntu impish/main ppc64el gpg ppc64el 2.2.20-1ubuntu4 [567 kB] Get:128 http://ftpmaster.internal/ubuntu impish/main ppc64el gpgconf ppc64el 2.2.20-1ubuntu4 [97.8 kB] Get:129 http://ftpmaster.internal/ubuntu impish/main ppc64el gpg-agent ppc64el 2.2.20-1ubuntu4 [215 kB] Get:130 http://ftpmaster.internal/ubuntu impish/main ppc64el pkgbinarymangler all 148 [32.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 250 MB in 11s (22.8 MB/s) (Reading database ... 13069 files and directories currently installed.) 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Setting up usrmerge (25ubuntu1) ... Setting up libss2:ppc64el (1.46.3-1ubuntu3) ... Setting up libperl5.32:ppc64el (5.32.1-3ubuntu3) ... Setting up logsave (1.46.3-1ubuntu3) ... Setting up libubsan1:ppc64el (11.2.0-7ubuntu2) ... Setting up advancecomp (2.1-2.1ubuntu1) ... Setting up libdevmapper1.02.1:ppc64el (2:1.02.175-2.1ubuntu1) ... Setting up mount (2.36.1-8ubuntu1) ... Setting up libnsl-dev:ppc64el (1.3.0-2) ... Setting up libcrypt-dev:ppc64el (1:4.4.18-4ubuntu1) ... Setting up libcryptsetup12:ppc64el (2:2.3.6-0ubuntu1) ... Setting up libbinutils:ppc64el (2.37-7ubuntu1) ... Setting up libisl23:ppc64el (0.24-1) ... Setting up libc-dev-bin (2.34-0ubuntu2) ... Setting up openssl (1.1.1l-1ubuntu1) ... Setting up readline-common (8.1-2) ... Setting up libcc1-0:ppc64el (11.2.0-7ubuntu2) ... Setting up liblsan0:ppc64el (11.2.0-7ubuntu2) ... Setting up libprocps8:ppc64el (2:3.3.17-5ubuntu3) ... Setting up cpp-10 (10.3.0-11ubuntu1) ... Setting up libitm1:ppc64el (11.2.0-7ubuntu2) ... Setting up libkmod2:ppc64el (28-1ubuntu4) ... Setting up libtsan0:ppc64el (11.2.0-7ubuntu2) ... Setting up libctf0:ppc64el (2.37-7ubuntu1) ... Setting up pinentry-curses (1.1.1-1) ... Setting up cpp-11 (11.2.0-7ubuntu2) ... Setting up pkgbinarymangler (148) ... Setting up libgcc-10-dev:ppc64el (10.3.0-11ubuntu1) ... Setting up libreadline8:ppc64el (8.1-2) ... Setting up e2fsprogs (1.46.3-1ubuntu3) ... Setting up perl (5.32.1-3ubuntu3) ... Setting up libdpkg-perl (1.20.9ubuntu2) ... Setting up libgcc-11-dev:ppc64el (11.2.0-7ubuntu2) ... Setting up cpp (4:11.2.0-1ubuntu1) ... Setting up procps (2:3.3.17-5ubuntu3) ... update-alternatives: warning: alternative /usr/bin/w.procps (part of link group w) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/w is dangling; it will be updated with best choice Setting up gpgconf (2.2.20-1ubuntu4) ... Setting up libc6-dev:ppc64el (2.34-0ubuntu2) ... Setting up binutils-powerpc64le-linux-gnu (2.37-7ubuntu1) ... Setting up gpg (2.2.20-1ubuntu4) ... Setting up libstdc++-10-dev:ppc64el (10.3.0-11ubuntu1) ... Setting up gpg-agent (2.2.20-1ubuntu4) ... Setting up binutils (2.37-7ubuntu1) ... Setting up dpkg-dev (1.20.9ubuntu2) ... Setting up gcc-10 (10.3.0-11ubuntu1) ... Setting up libstdc++-11-dev:ppc64el (11.2.0-7ubuntu2) ... Setting up gcc-11 (11.2.0-7ubuntu2) ... Setting up g++-10 (10.3.0-11ubuntu1) ... Setting up g++-11 (11.2.0-7ubuntu2) ... Setting up gcc (4:11.2.0-1ubuntu1) ... Setting up g++ (4:11.2.0-1ubuntu1) ... Setting up build-essential (12.9ubuntu1) ... Setting up systemd-timesyncd (248.3-1ubuntu7) ... Installing new version of config file /etc/systemd/timesyncd.conf ... Setting up systemd (248.3-1ubuntu7) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/pstore.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/sleep.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (248.3-1ubuntu7) ... Processing triggers for libc-bin (2.34-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22110960 ppc64el impish-proposed -c chroot:build-PACKAGEBUILD-22110960 --arch=ppc64el --dist=impish-proposed --nolog ivar_1.3.1+dfsg-4.dsc Initiating build PACKAGEBUILD-22110960 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-158-generic #166-Ubuntu SMP Fri Sep 17 19:34:37 UTC 2021 ppc64le sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-ppc64el-024.buildd +==============================================================================+ | ivar 1.3.1+dfsg-4 (ppc64el) Fri, 24 Sep 2021 10:42:15 +0000 | +==============================================================================+ Package: ivar Version: 1.3.1+dfsg-4 Source Version: 1.3.1+dfsg-4 Distribution: impish-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22110960/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ivar_1.3.1+dfsg-4.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/ivar-a0tChg/ivar-1.3.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/ivar-a0tChg' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-xleaaB/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-xleaaB/apt_archive ./ InRelease Get:2 copy:/<>/resolver-xleaaB/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-xleaaB/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-xleaaB/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-xleaaB/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (107 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: cpp-10 g++-10 gcc-10 gcc-10-base libgcc-10-dev libstdc++-10-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 652 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-xleaaB/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [652 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 652 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14177 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libhts-dev Filtered Build-Depends: debhelper-compat (= 13), libhts-dev dpkg-deb: building package 'sbuild-build-depends-ivar-dummy' in '/<>/resolver-xleaaB/apt_archive/sbuild-build-depends-ivar-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-ivar-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-xleaaB/apt_archive ./ InRelease Get:2 copy:/<>/resolver-xleaaB/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-xleaaB/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-xleaaB/apt_archive ./ Sources [494 B] Get:5 copy:/<>/resolver-xleaaB/apt_archive ./ Packages [573 B] Fetched 2030 B in 0s (120 kB/s) Reading package lists... Reading package lists... Install ivar build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-10 libstdc++-10-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1 libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu67 libldap-2.5-0 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1 libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu67 libldap-2.5-0 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-ivar-dummy zlib1g-dev 0 upgraded, 50 newly installed, 0 to remove and 0 not upgraded. Need to get 27.4 MB of archives. After this operation, 92.5 MB of additional disk space will be used. Get:1 copy:/<>/resolver-xleaaB/apt_archive ./ sbuild-build-depends-ivar-dummy 0.invalid.0 [672 B] Get:2 http://ftpmaster.internal/ubuntu impish/main ppc64el bsdextrautils ppc64el 2.36.1-8ubuntu1 [81.6 kB] Get:3 http://ftpmaster.internal/ubuntu impish/main ppc64el libuchardet0 ppc64el 0.0.7-1 [71.0 kB] Get:4 http://ftpmaster.internal/ubuntu impish/main ppc64el groff-base ppc64el 1.22.4-7 [1033 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main ppc64el libpipeline1 ppc64el 1.5.3-1 [29.6 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main ppc64el man-db ppc64el 2.9.4-2 [1185 kB] Get:7 http://ftpmaster.internal/ubuntu impish/main ppc64el libelf1 ppc64el 0.185-1 [54.8 kB] Get:8 http://ftpmaster.internal/ubuntu impish/main ppc64el libicu67 ppc64el 67.1-7ubuntu1 [10.4 MB] Get:9 http://ftpmaster.internal/ubuntu impish/main ppc64el libxml2 ppc64el 2.9.12+dfsg-4 [839 kB] Get:10 http://ftpmaster.internal/ubuntu impish/main ppc64el libmagic-mgc ppc64el 1:5.39-3 [228 kB] Get:11 http://ftpmaster.internal/ubuntu impish/main ppc64el libmagic1 ppc64el 1:5.39-3 [93.4 kB] Get:12 http://ftpmaster.internal/ubuntu impish/main ppc64el file ppc64el 1:5.39-3 [24.7 kB] Get:13 http://ftpmaster.internal/ubuntu impish/main ppc64el gettext-base ppc64el 0.21-4ubuntu3 [40.5 kB] Get:14 http://ftpmaster.internal/ubuntu impish/main ppc64el libpsl5 ppc64el 0.21.0-1.2 [55.2 kB] Get:15 http://ftpmaster.internal/ubuntu impish/main ppc64el libsigsegv2 ppc64el 2.13-1ubuntu1 [14.8 kB] Get:16 http://ftpmaster.internal/ubuntu impish/main ppc64el m4 ppc64el 1.4.18-5ubuntu1 [213 kB] Get:17 http://ftpmaster.internal/ubuntu impish/main ppc64el autoconf all 2.69-14 [293 kB] Get:18 http://ftpmaster.internal/ubuntu impish/main ppc64el autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:19 http://ftpmaster.internal/ubuntu impish/main ppc64el automake all 1:1.16.4-2 [557 kB] Get:20 http://ftpmaster.internal/ubuntu impish/main ppc64el autopoint all 0.21-4ubuntu3 [422 kB] Get:21 http://ftpmaster.internal/ubuntu impish/main ppc64el libdebhelper-perl all 13.3.4ubuntu2 [62.5 kB] Get:22 http://ftpmaster.internal/ubuntu impish/main ppc64el libtool all 2.4.6-15 [161 kB] Get:23 http://ftpmaster.internal/ubuntu impish/main ppc64el dh-autoreconf all 20 [16.1 kB] Get:24 http://ftpmaster.internal/ubuntu impish/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:25 http://ftpmaster.internal/ubuntu impish/main ppc64el libsub-override-perl all 0.09-2 [9532 B] Get:26 http://ftpmaster.internal/ubuntu impish/main ppc64el libfile-stripnondeterminism-perl all 1.12.0-1 [17.5 kB] Get:27 http://ftpmaster.internal/ubuntu impish/main ppc64el dh-strip-nondeterminism all 1.12.0-1 [5228 B] Get:28 http://ftpmaster.internal/ubuntu impish/main ppc64el libdw1 ppc64el 0.185-1 [244 kB] Get:29 http://ftpmaster.internal/ubuntu impish/main ppc64el debugedit ppc64el 1:5.0-0ubuntu2 [52.4 kB] Get:30 http://ftpmaster.internal/ubuntu impish/main ppc64el dwz ppc64el 0.14-1 [109 kB] Get:31 http://ftpmaster.internal/ubuntu impish/main ppc64el gettext ppc64el 0.21-4ubuntu3 [895 kB] Get:32 http://ftpmaster.internal/ubuntu impish/main ppc64el intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:33 http://ftpmaster.internal/ubuntu impish/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] Get:34 http://ftpmaster.internal/ubuntu impish/main ppc64el debhelper all 13.3.4ubuntu2 [921 kB] Get:35 http://ftpmaster.internal/ubuntu impish/main ppc64el libbrotli1 ppc64el 1.0.9-2build2 [304 kB] Get:36 http://ftpmaster.internal/ubuntu impish/main ppc64el libsasl2-modules-db ppc64el 2.1.27+dfsg-2.1build1 [16.8 kB] Get:37 http://ftpmaster.internal/ubuntu impish/main ppc64el libsasl2-2 ppc64el 2.1.27+dfsg-2.1build1 [57.3 kB] Get:38 http://ftpmaster.internal/ubuntu impish/main ppc64el libldap-2.5-0 ppc64el 2.5.6+dfsg-1~exp1ubuntu1 [222 kB] Get:39 http://ftpmaster.internal/ubuntu impish/main ppc64el libnghttp2-14 ppc64el 1.43.0-1 [83.7 kB] Get:40 http://ftpmaster.internal/ubuntu impish/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build2 [59.2 kB] Get:41 http://ftpmaster.internal/ubuntu impish/main ppc64el libssh-4 ppc64el 0.9.6-1 [237 kB] Get:42 http://ftpmaster.internal/ubuntu impish/main ppc64el libcurl3-gnutls ppc64el 7.74.0-1.3ubuntu2 [347 kB] Get:43 http://ftpmaster.internal/ubuntu impish/main ppc64el libcurl4-gnutls-dev ppc64el 7.74.0-1.3ubuntu2 [429 kB] Get:44 http://ftpmaster.internal/ubuntu impish/main ppc64el libdeflate0 ppc64el 1.7-2ubuntu2 [49.7 kB] Get:45 http://ftpmaster.internal/ubuntu impish/main ppc64el libdeflate-dev ppc64el 1.7-2ubuntu2 [43.3 kB] Get:46 http://ftpmaster.internal/ubuntu impish/universe ppc64el libhtscodecs2 ppc64el 1.1.1-2 [81.4 kB] Get:47 http://ftpmaster.internal/ubuntu impish/universe ppc64el libhts3 ppc64el 1.13+ds-2 [507 kB] Get:48 http://ftpmaster.internal/ubuntu impish/main ppc64el liblzma-dev ppc64el 5.2.5-2 [169 kB] Get:49 http://ftpmaster.internal/ubuntu impish/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-2ubuntu7 [177 kB] Get:50 http://ftpmaster.internal/ubuntu impish/universe ppc64el libhts-dev ppc64el 1.13+ds-2 [6009 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.4 MB in 1s (18.7 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 14177 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8ubuntu1_ppc64el.deb ... Unpacking bsdextrautils (2.36.1-8ubuntu1) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../01-libuchardet0_0.0.7-1_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-7_ppc64el.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../03-libpipeline1_1.5.3-1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_ppc64el.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libelf1:ppc64el. Preparing to unpack .../05-libelf1_0.185-1_ppc64el.deb ... Unpacking libelf1:ppc64el (0.185-1) ... Selecting previously unselected package libicu67:ppc64el. Preparing to unpack .../06-libicu67_67.1-7ubuntu1_ppc64el.deb ... Unpacking libicu67:ppc64el (67.1-7ubuntu1) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../07-libxml2_2.9.12+dfsg-4_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.12+dfsg-4) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../08-libmagic-mgc_1%3a5.39-3_ppc64el.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../09-libmagic1_1%3a5.39-3_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../10-file_1%3a5.39-3_ppc64el.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../11-gettext-base_0.21-4ubuntu3_ppc64el.deb ... Unpacking gettext-base (0.21-4ubuntu3) ... Selecting previously unselected package libpsl5:ppc64el. Preparing to unpack .../12-libpsl5_0.21.0-1.2_ppc64el.deb ... Unpacking libpsl5:ppc64el (0.21.0-1.2) ... Selecting previously unselected package libsigsegv2:ppc64el. Preparing to unpack .../13-libsigsegv2_2.13-1ubuntu1_ppc64el.deb ... Unpacking libsigsegv2:ppc64el (2.13-1ubuntu1) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.18-5ubuntu1_ppc64el.deb ... Unpacking m4 (1.4.18-5ubuntu1) ... Selecting previously unselected package autoconf. Preparing to unpack .../15-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../16-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../17-automake_1%3a1.16.4-2_all.deb ... Unpacking automake (1:1.16.4-2) ... Selecting previously unselected package autopoint. 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Unpacking libsasl2-2:ppc64el (2.1.27+dfsg-2.1build1) ... Selecting previously unselected package libldap-2.5-0:ppc64el. Preparing to unpack .../36-libldap-2.5-0_2.5.6+dfsg-1~exp1ubuntu1_ppc64el.deb ... Unpacking libldap-2.5-0:ppc64el (2.5.6+dfsg-1~exp1ubuntu1) ... Selecting previously unselected package libnghttp2-14:ppc64el. Preparing to unpack .../37-libnghttp2-14_1.43.0-1_ppc64el.deb ... Unpacking libnghttp2-14:ppc64el (1.43.0-1) ... Selecting previously unselected package librtmp1:ppc64el. Preparing to unpack .../38-librtmp1_2.4+20151223.gitfa8646d.1-2build2_ppc64el.deb ... Unpacking librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build2) ... Selecting previously unselected package libssh-4:ppc64el. Preparing to unpack .../39-libssh-4_0.9.6-1_ppc64el.deb ... Unpacking libssh-4:ppc64el (0.9.6-1) ... Selecting previously unselected package libcurl3-gnutls:ppc64el. Preparing to unpack .../40-libcurl3-gnutls_7.74.0-1.3ubuntu2_ppc64el.deb ... 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Selecting previously unselected package liblzma-dev:ppc64el. Preparing to unpack .../46-liblzma-dev_5.2.5-2_ppc64el.deb ... Unpacking liblzma-dev:ppc64el (5.2.5-2) ... Selecting previously unselected package zlib1g-dev:ppc64el. Preparing to unpack .../47-zlib1g-dev_1%3a1.2.11.dfsg-2ubuntu7_ppc64el.deb ... Unpacking zlib1g-dev:ppc64el (1:1.2.11.dfsg-2ubuntu7) ... Selecting previously unselected package libhts-dev:ppc64el. Preparing to unpack .../48-libhts-dev_1.13+ds-2_ppc64el.deb ... Unpacking libhts-dev:ppc64el (1.13+ds-2) ... Selecting previously unselected package sbuild-build-depends-ivar-dummy. Preparing to unpack .../49-sbuild-build-depends-ivar-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-ivar-dummy (0.invalid.0) ... Setting up libhtscodecs2:ppc64el (1.1.1-2) ... Setting up libpipeline1:ppc64el (1.5.3-1) ... Setting up libpsl5:ppc64el (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-8ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:ppc64el (67.1-7ubuntu1) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4ubuntu2) ... Setting up libbrotli1:ppc64el (1.0.9-2build2) ... Setting up libnghttp2-14:ppc64el (1.43.0-1) ... Setting up libmagic1:ppc64el (1:5.39-3) ... Setting up libdeflate0:ppc64el (1.7-2ubuntu2) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up file (1:5.39-3) ... Setting up libsasl2-modules-db:ppc64el (2.1.27+dfsg-2.1build1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build2) ... Setting up libsigsegv2:ppc64el (2.13-1ubuntu1) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up libsasl2-2:ppc64el (2.1.27+dfsg-2.1build1) ... Setting up libssh-4:ppc64el (0.9.6-1) ... Setting up liblzma-dev:ppc64el (5.2.5-2) ... Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-2ubuntu7) ... Setting up libuchardet0:ppc64el (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libdeflate-dev:ppc64el (1.7-2ubuntu2) ... Setting up libelf1:ppc64el (0.185-1) ... Setting up libxml2:ppc64el (2.9.12+dfsg-4) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libdw1:ppc64el (0.185-1) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up libldap-2.5-0:ppc64el (2.5.6+dfsg-1~exp1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-7) ... Setting up debugedit (1:5.0-0ubuntu2) ... Setting up automake (1:1.16.4-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:ppc64el (7.74.0-1.3ubuntu2) ... Setting up libcurl4-gnutls-dev:ppc64el (7.74.0-1.3ubuntu2) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up libhts3:ppc64el (1.13+ds-2) ... Setting up libhts-dev:ppc64el (1.13+ds-2) ... Setting up debhelper (13.3.4ubuntu2) ... Setting up sbuild-build-depends-ivar-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-158-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.37-7ubuntu1 dpkg-dev_1.20.9ubuntu2 g++-10_10.3.0-11ubuntu1 g++-11_11.2.0-7ubuntu2 gcc-10_10.3.0-11ubuntu1 gcc-11_11.2.0-7ubuntu2 libc6-dev_2.34-0ubuntu2 libstdc++-10-dev_10.3.0-11ubuntu1 libstdc++-11-dev_11.2.0-7ubuntu2 libstdc++6_11.2.0-7ubuntu2 linux-libc-dev_5.13.0-16.16 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.9 autoconf_2.69-14 automake_1:1.16.4-2 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_11.1ubuntu3 base-passwd_3.5.51 bash_5.1-3ubuntu1 binutils_2.37-7ubuntu1 binutils-common_2.37-7ubuntu1 binutils-powerpc64le-linux-gnu_2.37-7ubuntu1 bsdextrautils_2.36.1-8ubuntu1 bsdutils_1:2.36.1-8ubuntu1 build-essential_12.9ubuntu1 bzip2_1.0.8-4ubuntu3 ca-certificates_20210119build1 coreutils_8.32-4ubuntu2 cpp_4:11.2.0-1ubuntu1 cpp-10_10.3.0-11ubuntu1 cpp-11_11.2.0-7ubuntu2 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.3.4ubuntu2 debianutils_4.11.2 debugedit_1:5.0-0ubuntu2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.8-0ubuntu1 dpkg_1.20.9ubuntu2 dpkg-dev_1.20.9ubuntu2 dwz_0.14-1 e2fsprogs_1.46.3-1ubuntu3 fakeroot_1.25.3-1.1ubuntu2 file_1:5.39-3 findutils_4.8.0-1ubuntu2 g++_4:11.2.0-1ubuntu1 g++-10_10.3.0-11ubuntu1 g++-11_11.2.0-7ubuntu2 gcc_4:11.2.0-1ubuntu1 gcc-10_10.3.0-11ubuntu1 gcc-10-base_10.3.0-11ubuntu1 gcc-11_11.2.0-7ubuntu2 gcc-11-base_11.2.0-7ubuntu2 gettext_0.21-4ubuntu3 gettext-base_0.21-4ubuntu3 gpg_2.2.20-1ubuntu4 gpg-agent_2.2.20-1ubuntu4 gpgconf_2.2.20-1ubuntu4 gpgv_2.2.20-1ubuntu4 grep_3.7-0ubuntu1 groff-base_1.22.4-7 gzip_1.10-4ubuntu1 hostname_3.23 init_1.60 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu1 libapparmor1_3.0.3-0ubuntu1 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build21.04.0 libasan6_11.2.0-7ubuntu2 libassuan0_2.5.5-1 libatomic1_11.2.0-7ubuntu2 libattr1_1:2.4.48-6build1 libaudit-common_1:3.0-2ubuntu2 libaudit1_1:3.0-2ubuntu2 libbinutils_2.37-7ubuntu1 libblkid1_2.36.1-8ubuntu1 libbrotli1_1.0.9-2build2 libbz2-1.0_1.0.8-4ubuntu3 libc-bin_2.34-0ubuntu2 libc-dev-bin_2.34-0ubuntu2 libc6_2.34-0ubuntu2 libc6-dev_2.34-0ubuntu2 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1build1 libcc1-0_11.2.0-7ubuntu2 libcom-err2_1.46.3-1ubuntu3 libcrypt-dev_1:4.4.18-4ubuntu1 libcrypt1_1:4.4.18-4ubuntu1 libcryptsetup12_2:2.3.6-0ubuntu1 libctf-nobfd0_2.37-7ubuntu1 libctf0_2.37-7ubuntu1 libcurl3-gnutls_7.74.0-1.3ubuntu2 libcurl4-gnutls-dev_7.74.0-1.3ubuntu2 libdb5.3_5.3.28+dfsg1-0.8ubuntu1 libdebconfclient0_0.256ubuntu3 libdebhelper-perl_13.3.4ubuntu2 libdeflate-dev_1.7-2ubuntu2 libdeflate0_1.7-2ubuntu2 libdevmapper1.02.1_2:1.02.175-2.1ubuntu1 libdpkg-perl_1.20.9ubuntu2 libdw1_0.185-1 libelf1_0.185-1 libext2fs2_1.46.3-1ubuntu3 libfakeroot_1.25.3-1.1ubuntu2 libffi8_3.4.2-1ubuntu5 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.3.0-11ubuntu1 libgcc-11-dev_11.2.0-7ubuntu2 libgcc-s1_11.2.0-7ubuntu2 libgcrypt20_1.8.7-5ubuntu2 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgmp10_2:6.2.1+dfsg-1ubuntu2 libgnutls30_3.7.1-5ubuntu1 libgomp1_11.2.0-7ubuntu2 libgpg-error0_1.38-2build1 libgssapi-krb5-2_1.18.3-6 libhogweed6_3.7.3-1 libhts-dev_1.13+ds-2 libhts3_1.13+ds-2 libhtscodecs2_1.1.1-2 libicu67_67.1-7ubuntu1 libidn2-0_2.3.1-1 libip4tc2_1.8.7-1ubuntu2 libisl23_0.24-1 libitm1_11.2.0-7ubuntu2 libjson-c5_0.15-2build2 libk5crypto3_1.18.3-6 libkeyutils1_1.6.1-2ubuntu1 libkmod2_28-1ubuntu4 libkrb5-3_1.18.3-6 libkrb5support0_1.18.3-6 libldap-2.5-0_2.5.6+dfsg-1~exp1ubuntu1 liblockfile-bin_1.17-1 liblockfile1_1.17-1 liblsan0_11.2.0-7ubuntu2 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-8ubuntu1 libmpc3_1.2.0-1build1 libmpfr6_4.1.0-3build1 libncurses6_6.2+20201114-2build1 libncursesw6_6.2+20201114-2build1 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1build1 libpam-modules_1.3.1-5ubuntu11 libpam-modules-bin_1.3.1-5ubuntu11 libpam-runtime_1.3.1-5ubuntu11 libpam0g_1.3.1-5ubuntu11 libpcre2-8-0_10.37-0ubuntu2 libpcre3_2:8.39-13build3 libperl5.32_5.32.1-3ubuntu3 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3build3 libprocps8_2:3.3.17-5ubuntu3 libpsl5_0.21.0-1.2 libquadmath0_11.2.0-7ubuntu2 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2build2 libsasl2-2_2.1.27+dfsg-2.1build1 libsasl2-modules-db_2.1.27+dfsg-2.1build1 libseccomp2_2.5.1-1ubuntu1 libselinux1_3.1-3build1 libsemanage-common_3.1-1ubuntu1 libsemanage1_3.1-1ubuntu1 libsepol1_3.1-1ubuntu1 libsigsegv2_2.13-1ubuntu1 libsmartcols1_2.36.1-8ubuntu1 libsqlite3-0_3.35.5-1 libss2_1.46.3-1ubuntu3 libssh-4_0.9.6-1 libssl1.1_1.1.1l-1ubuntu1 libstdc++-10-dev_10.3.0-11ubuntu1 libstdc++-11-dev_11.2.0-7ubuntu2 libstdc++6_11.2.0-7ubuntu2 libsub-override-perl_0.09-2 libsystemd0_248.3-1ubuntu7 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2build1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-7ubuntu2 libubsan1_11.2.0-7ubuntu2 libuchardet0_0.0.7-1 libudev1_248.3-1ubuntu7 libunistring2_0.9.10-6 libuuid1_2.36.1-8ubuntu1 libxml2_2.9.12+dfsg-4 libxxhash0_0.8.0-2 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.13.0-16.16 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu9 logsave_1.46.3-1ubuntu3 lsb-base_11.1.0ubuntu2 lto-disabled-list_16 m4_1.4.18-5ubuntu1 make_4.3-4ubuntu1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-8ubuntu1 ncurses-base_6.2+20201114-2build1 ncurses-bin_6.2+20201114-2build1 openssl_1.1.1l-1ubuntu1 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu9 patch_2.7.6-7 perl_5.32.1-3ubuntu3 perl-base_5.32.1-3ubuntu3 perl-modules-5.32_5.32.1-3ubuntu3 pinentry-curses_1.1.1-1 pkgbinarymangler_148 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 readline-common_8.1-2 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ivar-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.14 systemd_248.3-1ubuntu7 systemd-sysv_248.3-1ubuntu7 systemd-timesyncd_248.3-1ubuntu7 sysvinit-utils_2.96-7ubuntu1 tar_1.34+dfsg-1build1 tzdata_2021a-1ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu1 util-linux_2.36.1-8ubuntu1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2ubuntu7 zlib1g-dev_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Sep 22 17:01:16 2021 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ivar_1.3.1+dfsg-4.dsc dpkg-source: info: extracting ivar in /<>/ivar-1.3.1+dfsg dpkg-source: info: unpacking ivar_1.3.1+dfsg.orig.tar.xz dpkg-source: info: unpacking ivar_1.3.1+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix-warning.patch dpkg-source: info: applying forward-build-options.patch dpkg-source: info: applying gcc-11.patch dpkg-source: info: applying gcc-11_2.patch dpkg-source: info: applying privacy-breach.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22110960 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22110960 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22110960 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ivar dpkg-buildpackage: info: source version 1.3.1+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/ivar-1.3.1+dfsg' rm -f data/db/test_ref.fa.fai data/test.gap.fa data/test.gap.qual.txt data/test.indel.tsv data/test.masked_primer_indices.txt data/test.trimmed.masked.bam data/test.trimmed.masked.bam.bai data/test.trimmed.sorted.bam.bai data/test.unmapped.sorted.bam.bai make[1]: Leaving directory '/<>/ivar-1.3.1+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:12: installing './compile' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=powerpc64le-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/powerpc64le-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gawk... (cached) mawk checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for main in -lhts... no checking for main in -lpthread... no checking for main in -lz... no checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... no checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for int16_t... yes checking for int32_t... yes checking for int8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint8_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... no checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... no checking for memmove... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -a make -j4 make[1]: Entering directory '/<>/ivar-1.3.1+dfsg' make all-recursive make[2]: Entering directory '/<>/ivar-1.3.1+dfsg' Making all in src make[3]: Entering directory '/<>/ivar-1.3.1+dfsg/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o ivar.o ivar.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o call_consensus_pileup.o call_consensus_pileup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o alignment.o alignment.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp Using built-in specs. COLLECT_GCC=g++ Using built-in specs. OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.2.0-7ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-secureplt --with-cpu=power8 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-11-gk15oC/gcc-11-11.2.0/debian/tmp-nvptx/usr --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.2.0 (Ubuntu 11.2.0-7ubuntu2) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mcpu=power8' COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.2.0-7ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-secureplt --with-cpu=power8 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-11-gk15oC/gcc-11-11.2.0/debian/tmp-nvptx/usr --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.2.0 (Ubuntu 11.2.0-7ubuntu2) /usr/lib/gcc/powerpc64le-linux-gnu/11/cc1plus -quiet -vCOLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mcpu=power8' /usr/lib/gcc/powerpc64le-linux-gnu/11/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 alignment.cpp -msecure-plt -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mcpu=power8 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccsuMFh3.s -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -msecure-plt -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -mcpu=power8 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccVmrVhz.s Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.2.0-7ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-secureplt --with-cpu=power8 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-11-gk15oC/gcc-11-11.2.0/debian/tmp-nvptx/usr --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.2.0 (Ubuntu 11.2.0-7ubuntu2) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mcpu=power8' /usr/lib/gcc/powerpc64le-linux-gnu/11/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCEUsing built-in specs. -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ivar.cpp -msecure-plt -quiet -dumpbase ivar.cpp -dumpbase-ext .cpp -mcpu=power8 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccoNdHU8.s COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.2.0-7ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-secureplt --with-cpu=power8 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-11-gk15oC/gcc-11-11.2.0/debian/tmp-nvptx/usr --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.2.0 (Ubuntu 11.2.0-7ubuntu2) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mcpu=power8' /usr/lib/gcc/powerpc64le-linux-gnu/11/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 suffix_tree.cpp -msecure-plt -quiet -dumpbase suffix_tree.cpp -dumpbase-ext .cpp -mcpu=power8 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccJ4fHeu.s GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../include/powerpc64-linux-gnu/c++/11" GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/11 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../include/powerpc64-linux-gnu/c++/11" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/11 /usr/include/powerpc64le-linux-gnu/c++/11 /usr/include/c++/11/backward /usr/lib/gcc/powerpc64le-linux-gnu/11/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. /usr/include/powerpc64le-linux-gnu/c++/11 /usr/include/c++/11/backward /usr/lib/gcc/powerpc64le-linux-gnu/11/include /usr/local/include /usr/include/powerpc64le-linux-gnu GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 /usr/include End of search list. GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../include/powerpc64-linux-gnu/c++/11" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/11 /usr/include/powerpc64le-linux-gnu/c++/11 /usr/include/c++/11/backward /usr/lib/gcc/powerpc64le-linux-gnu/11/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../include/powerpc64-linux-gnu/c++/11" Compiler executable checksum: e3Compiler executable checksum: e3c13d6efa2a33c815f99a022dd7233e ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../powerpc64le-linux-gnu/include" c13d6efa2a33c815f99a022dd7233e#include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/11 /usr/include/powerpc64le-linux-gnu/c++/11 /usr/include/c++/11/backward /usr/lib/gcc/powerpc64le-linux-gnu/11/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: e3c13d6efa2a33c815f99a022dd7233e Compiler executable checksum: e3c13d6efa2a33c815f99a022dd7233e COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mcpu=power8' as -v -I . -I .. -a64 -mpower8 -many -mlittle -o alignment.o /tmp/ccsuMFh3.s GNU assembler version 2.37 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.37 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mcpu=power8' '-dumpdir' 'alignment.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.2.0-7ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-secureplt --with-cpu=power8 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-11-gk15oC/gcc-11-11.2.0/debian/tmp-nvptx/usr --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.2.0 (Ubuntu 11.2.0-7ubuntu2) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mcpu=power8' /usr/lib/gcc/powerpc64le-linux-gnu/11/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 trim_primer_quality.cpp -msecure-plt -quiet -dumpbase trim_primer_quality.cpp -dumpbase-ext .cpp -mcpu=power8 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccciDfwV.s GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../include/powerpc64-linux-gnu/c++/11" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/11 /usr/include/powerpc64le-linux-gnu/c++/11 /usr/include/c++/11/backward /usr/lib/gcc/powerpc64le-linux-gnu/11/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: e3c13d6efa2a33c815f99a022dd7233e In file included from /usr/include/c++/11/algorithm:62, from call_consensus_pileup.h:6, from call_consensus_pileup.cpp:1: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1799:5: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mcpu=power8' as -v -I . -I .. -a64 -mpower8 -many -mlittle -o ivar.o /tmp/ccoNdHU8.s GNU assembler version 2.37 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.37 In file included from /usr/include/c++/11/vector:67, from trim_primer_quality.h:9, from trim_primer_quality.cpp:1: /usr/include/c++/11/bits/stl_vector.h: In copy constructor ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = primer; _Alloc = std::allocator]’: /usr/include/c++/11/bits/stl_vector.h:553:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 553 | vector(const vector& __x) | ^~~~~~ MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mcpu=power8' '-dumpdir' 'ivar.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.2.0-7ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-secureplt --with-cpu=power8 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-11-gk15oC/gcc-11-11.2.0/debian/tmp-nvptx/usr --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.2.0 (Ubuntu 11.2.0-7ubuntu2) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mcpu=power8' /usr/lib/gcc/powerpc64le-linux-gnu/11/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 remove_reads_from_amplicon.cpp -msecure-plt -quiet -dumpbase remove_reads_from_amplicon.cpp -dumpbase-ext .cpp -mcpu=power8 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccpLEtPm.s GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../include/powerpc64-linux-gnu/c++/11" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/11 /usr/include/powerpc64le-linux-gnu/c++/11 /usr/include/c++/11/backward /usr/lib/gcc/powerpc64le-linux-gnu/11/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: e3c13d6efa2a33c815f99a022dd7233e COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mcpu=power8' as -v -I . -I .. -a64 -mpower8 -many -mlittle -o call_consensus_pileup.o /tmp/ccVmrVhz.s GNU assembler version 2.37 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.37 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mcpu=power8' as -v -I . -I .. -a64 -mpower8 -many -mlittle -o suffix_tree.o /tmp/ccJ4fHeu.s GNU assembler version 2.37 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.37 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mcpu=power8' '-dumpdir' 'call_consensus_pileup.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.2.0-7ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-secureplt --with-cpu=power8 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-11-gk15oC/gcc-11-11.2.0/debian/tmp-nvptx/usr --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.2.0 (Ubuntu 11.2.0-7ubuntu2) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mcpu=power8' /usr/lib/gcc/powerpc64le-linux-gnu/11/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_variants.cpp -msecure-plt -quiet -dumpbase call_variants.cpp -dumpbase-ext .cpp -mcpu=power8 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccJutQIA.s GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../include/powerpc64-linux-gnu/c++/11" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/11 /usr/include/powerpc64le-linux-gnu/c++/11 /usr/include/c++/11/backward /usr/lib/gcc/powerpc64le-linux-gnu/11/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: e3c13d6efa2a33c815f99a022dd7233e remove_reads_from_amplicon.cpp: In function ‘int rmv_reads_from_amplicon(std::string, std::string, std::string, std::vector >, std::string, std::string)’: remove_reads_from_amplicon.cpp:3:5: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 3 | int rmv_reads_from_amplicon(std::string bam, std::string region_, std::string bam_out, std::vector amp, std::string bed, std::string cmd){ | ^~~~~~~~~~~~~~~~~~~~~~~ MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mcpu=power8' '-dumpdir' 'suffix_tree.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.2.0-7ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-secureplt --with-cpu=power8 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-11-gk15oC/gcc-11-11.2.0/debian/tmp-nvptx/usr --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.2.0 (Ubuntu 11.2.0-7ubuntu2) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mcpu=power8' /usr/lib/gcc/powerpc64le-linux-gnu/11/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 primer_bed.cpp -msecure-plt -quiet -dumpbase primer_bed.cpp -dumpbase-ext .cpp -mcpu=power8 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/cclRadTV.s GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../include/powerpc64-linux-gnu/c++/11" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/11 /usr/include/powerpc64le-linux-gnu/c++/11 /usr/include/c++/11/backward /usr/lib/gcc/powerpc64le-linux-gnu/11/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: e3c13d6efa2a33c815f99a022dd7233e COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mcpu=power8' as -v -I . -I .. -a64 -mpower8 -many -mlittle -o remove_reads_from_amplicon.o /tmp/ccpLEtPm.s GNU assembler version 2.37 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.37 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mcpu=power8' '-dumpdir' 'remove_reads_from_amplicon.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.2.0-7ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-secureplt --with-cpu=power8 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-11-gk15oC/gcc-11-11.2.0/debian/tmp-nvptx/usr --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.2.0 (Ubuntu 11.2.0-7ubuntu2) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mcpu=power8' /usr/lib/gcc/powerpc64le-linux-gnu/11/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 allele_functions.cpp -msecure-plt -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -mcpu=power8 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccfYseDX.s GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../include/powerpc64-linux-gnu/c++/11" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/11 /usr/include/powerpc64le-linux-gnu/c++/11 /usr/include/c++/11/backward /usr/lib/gcc/powerpc64le-linux-gnu/11/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: e3c13d6efa2a33c815f99a022dd7233e COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mcpu=power8' as -v -I . -I .. -a64 -mpower8 -many -mlittle -o trim_primer_quality.o /tmp/ccciDfwV.s GNU assembler version 2.37 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.37 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mcpu=power8' '-dumpdir' 'trim_primer_quality.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o get_masked_amplicons.o get_masked_amplicons.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.2.0-7ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-secureplt --with-cpu=power8 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-11-gk15oC/gcc-11-11.2.0/debian/tmp-nvptx/usr --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.2.0 (Ubuntu 11.2.0-7ubuntu2) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mcpu=power8' /usr/lib/gcc/powerpc64le-linux-gnu/11/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_masked_amplicons.cpp -msecure-plt -quiet -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -mcpu=power8 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccZKrj8d.s GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../include/powerpc64-linux-gnu/c++/11" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/11 /usr/include/powerpc64le-linux-gnu/c++/11 /usr/include/c++/11/backward /usr/lib/gcc/powerpc64le-linux-gnu/11/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: e3c13d6efa2a33c815f99a022dd7233e In file included from /usr/include/c++/11/vector:72, from call_variants.h:5, from call_variants.cpp:1: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const allele&}; _Tp = allele; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ primer_bed.cpp: In function ‘primer get_min_start(std::vector)’: primer_bed.cpp:281:8: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 281 | primer get_min_start(std::vector primers){ | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/algorithm:62, from allele_functions.cpp:4: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1799:5: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/vector:72, from primer_bed.h:2, from get_masked_amplicons.h:6, from get_masked_amplicons.cpp:1: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const primer&}; _Tp = primer; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mcpu=power8' as -v -I . -I .. -a64 -mpower8 -many -mlittle -o call_variants.o /tmp/ccJutQIA.s GNU assembler version 2.37 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.37 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mcpu=power8' '-dumpdir' 'call_variants.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.2.0-7ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-secureplt --with-cpu=power8 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-11-gk15oC/gcc-11-11.2.0/debian/tmp-nvptx/usr --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.2.0 (Ubuntu 11.2.0-7ubuntu2) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mcpu=power8' /usr/lib/gcc/powerpc64le-linux-gnu/11/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_common_variants.cpp -msecure-plt -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mcpu=power8 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccPV0WeF.s GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../include/powerpc64-linux-gnu/c++/11" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/11 /usr/include/powerpc64le-linux-gnu/c++/11 /usr/include/c++/11/backward /usr/lib/gcc/powerpc64le-linux-gnu/11/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: e3c13d6efa2a33c815f99a022dd7233e COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mcpu=power8' as -v -I . -I .. -a64 -mpower8 -many -mlittle -o get_masked_amplicons.o /tmp/ccZKrj8d.s GNU assembler version 2.37 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.37 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mcpu=power8' '-dumpdir' 'get_masked_amplicons.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o parse_gff.o parse_gff.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.2.0-7ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-secureplt --with-cpu=power8 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-11-gk15oC/gcc-11-11.2.0/debian/tmp-nvptx/usr --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.2.0 (Ubuntu 11.2.0-7ubuntu2) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mcpu=power8' /usr/lib/gcc/powerpc64le-linux-gnu/11/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 parse_gff.cpp -msecure-plt -quiet -dumpbase parse_gff.cpp -dumpbase-ext .cpp -mcpu=power8 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccjzL8qd.s GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../include/powerpc64-linux-gnu/c++/11" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/11 /usr/include/powerpc64le-linux-gnu/c++/11 /usr/include/c++/11/backward /usr/lib/gcc/powerpc64le-linux-gnu/11/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: e3c13d6efa2a33c815f99a022dd7233e COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mcpu=power8' as -v -I . -I .. -a64 -mpower8 -many -mlittle -o allele_functions.o /tmp/ccfYseDX.s GNU assembler version 2.37 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.37 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mcpu=power8' '-dumpdir' 'allele_functions.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o ref_seq.o ref_seq.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.2.0-7ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-secureplt --with-cpu=power8 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-11-gk15oC/gcc-11-11.2.0/debian/tmp-nvptx/usr --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.2.0 (Ubuntu 11.2.0-7ubuntu2) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mcpu=power8' /usr/lib/gcc/powerpc64le-linux-gnu/11/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ref_seq.cpp -msecure-plt -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mcpu=power8 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccrHaBpc.s GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../include/powerpc64-linux-gnu/c++/11" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/11 /usr/include/powerpc64le-linux-gnu/c++/11 /usr/include/c++/11/backward /usr/lib/gcc/powerpc64le-linux-gnu/11/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: e3c13d6efa2a33c815f99a022dd7233e COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mcpu=power8' as -v -I . -I .. -a64 -mpower8 -many -mlittle -o get_common_variants.o /tmp/ccPV0WeF.s GNU assembler version 2.37 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.37 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mcpu=power8' '-dumpdir' 'get_common_variants.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o interval_tree.o interval_tree.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.2.0-7ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-secureplt --with-cpu=power8 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-11-gk15oC/gcc-11-11.2.0/debian/tmp-nvptx/usr --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.2.0 (Ubuntu 11.2.0-7ubuntu2) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mcpu=power8' /usr/lib/gcc/powerpc64le-linux-gnu/11/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -msecure-plt -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mcpu=power8 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccZavX92.s GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../include/powerpc64-linux-gnu/c++/11" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/11 /usr/include/powerpc64le-linux-gnu/c++/11 /usr/include/c++/11/backward /usr/lib/gcc/powerpc64le-linux-gnu/11/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++11 (Ubuntu 11.2.0-7ubuntu2) version 11.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.0, isl version isl-0.24-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: e3c13d6efa2a33c815f99a022dd7233e COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mcpu=power8' as -v -I . -I .. -a64 -mpower8 -many -mlittle -o primer_bed.o /tmp/cclRadTV.s GNU assembler version 2.37 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.37 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mcpu=power8' '-dumpdir' 'primer_bed.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mcpu=power8' as -v -I . -I .. -a64 -mpower8 -many -mlittle -o ref_seq.o /tmp/ccrHaBpc.s GNU assembler version 2.37 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.37 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mcpu=power8' as -v -I . -I .. -a64 -mpower8 -many -mlittle -o interval_tree.o /tmp/ccZavX92.s GNU assembler version 2.37 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.37 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mcpu=power8' '-dumpdir' 'interval_tree.' MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mcpu=power8' '-dumpdir' 'ref_seq.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mcpu=power8' as -v -I . -I .. -a64 -mpower8 -many -mlittle -o parse_gff.o /tmp/ccjzL8qd.s GNU assembler version 2.37 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.37 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mcpu=power8' '-dumpdir' 'parse_gff.' g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ivar ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/powerpc64le-linux-gnu/11/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.2.0-7ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-secureplt --with-cpu=power8 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-11-gk15oC/gcc-11-11.2.0/debian/tmp-nvptx/usr --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.2.0 (Ubuntu 11.2.0-7ubuntu2) MAKEFLAGS=w -j4 COMPILER_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/11/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mcpu=power8' '-dumpdir' 'ivar.' /usr/lib/gcc/powerpc64le-linux-gnu/11/collect2 -plugin /usr/lib/gcc/powerpc64le-linux-gnu/11/liblto_plugin.so -plugin-opt=/usr/lib/gcc/powerpc64le-linux-gnu/11/lto-wrapper -plugin-opt=-fresolution=/tmp/ccJFkYrt.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -V -m elf64lppc --hash-style=gnu --as-needed -dynamic-linker /lib64/ld64.so.2 -pie -z now -z relro -o ivar /usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu/Scrt1.o /usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu/crti.o /usr/lib/gcc/powerpc64le-linux-gnu/11/crtbeginS.o -L/usr/lib/gcc/powerpc64le-linux-gnu/11 -L/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu -L/usr/lib/gcc/powerpc64le-linux-gnu/11/../../../../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/powerpc64le-linux-gnu/11/../../.. -Bsymbolic-functions -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/powerpc64le-linux-gnu/11/crtendS.o /usr/lib/gcc/powerpc64le-linux-gnu/11/../../../powerpc64le-linux-gnu/crtn.o GNU ld (GNU Binutils for Ubuntu) 2.37 Supported emulations: elf64lppc elf32lppc elf32lppclinux elf32lppcsim elf64ppc elf32ppc elf32ppclinux elf32ppcsim COLLECT_GCC_OPTIONS='-g' '-O3' '-ffile-prefix-map=/<>/ivar-1.3.1+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mcpu=power8' '-dumpdir' 'ivar.' make[3]: Leaving directory '/<>/ivar-1.3.1+dfsg/src' Making all in tests make[3]: Entering directory '/<>/ivar-1.3.1+dfsg/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/ivar-1.3.1+dfsg/tests' make[3]: Entering directory '/<>/ivar-1.3.1+dfsg' make[3]: Leaving directory '/<>/ivar-1.3.1+dfsg' make[2]: Leaving directory '/<>/ivar-1.3.1+dfsg' make[1]: Leaving directory '/<>/ivar-1.3.1+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/<>/ivar-1.3.1+dfsg' dh_auto_test --no-parallel make -j1 check VERBOSE=1 make[2]: Entering directory '/<>/ivar-1.3.1+dfsg' Making check in src make[3]: Entering directory '/<>/ivar-1.3.1+dfsg/src' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/ivar-1.3.1+dfsg/src' Making check in tests make[3]: Entering directory '/<>/ivar-1.3.1+dfsg/tests' make check_primer_trim check_trim check_quality_trim check_consensus check_allele_depth check_consensus_threshold check_consensus_min_depth check_consensus_seq_id check_primer_bed check_getmasked check_removereads check_variants check_common_variants check_unpaired_trim check_primer_trim_edge_cases check_isize_trim check_interval_tree check_amplicon_search make[4]: Entering directory '/<>/ivar-1.3.1+dfsg/tests' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_primer_trim.o test_primer_trim.cpp In file included from /usr/include/c++/11/vector:67, from ../src/trim_primer_quality.h:9, from test_primer_trim.cpp:2: /usr/include/c++/11/bits/stl_vector.h: In copy constructor ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = primer; _Alloc = std::allocator]’: /usr/include/c++/11/bits/stl_vector.h:553:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 553 | vector(const vector& __x) | ^~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/trim_primer_quality.o ../src/trim_primer_quality.cpp In file included from /usr/include/c++/11/vector:67, from ../src/trim_primer_quality.h:9, from ../src/trim_primer_quality.cpp:1: /usr/include/c++/11/bits/stl_vector.h: In copy constructor ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = primer; _Alloc = std::allocator]’: /usr/include/c++/11/bits/stl_vector.h:553:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 553 | vector(const vector& __x) | ^~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/primer_bed.o ../src/primer_bed.cpp ../src/primer_bed.cpp: In function ‘primer get_min_start(std::vector)’: ../src/primer_bed.cpp:281:8: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 281 | primer get_min_start(std::vector primers){ | ^~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/interval_tree.o ../src/interval_tree.cpp g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_primer_trim test_primer_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_trim.o test_trim.cpp g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_trim test_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o check_quality_trim.o check_quality_trim.cpp g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_quality_trim check_quality_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_call_consensus_from_plup.o test_call_consensus_from_plup.cpp In file included from ../src/call_consensus_pileup.h:11, from test_call_consensus_from_plup.cpp:2: ../src/allele_functions.h: In copy constructor ‘allele::allele(const allele&)’: ../src/allele_functions.h:8:8: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 8 | struct allele{ | ^~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/call_consensus_pileup.o ../src/call_consensus_pileup.cpp In file included from /usr/include/c++/11/algorithm:62, from ../src/call_consensus_pileup.h:6, from ../src/call_consensus_pileup.cpp:1: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/11/bits/stl_algo.h:1799:5: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/allele_functions.o ../src/allele_functions.cpp In file included from /usr/include/c++/11/algorithm:62, from ../src/allele_functions.cpp:4: /usr/include/c++/11/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/11/bits/stl_algo.h:1799:5: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_consensus test_call_consensus_from_plup.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_allele_depth.o test_allele_depth.cpp In file included from /usr/include/c++/11/vector:67, from ../src/allele_functions.h:2, from test_allele_depth.cpp:3: /usr/include/c++/11/bits/stl_vector.h: In copy constructor ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = allele; _Alloc = std::allocator]’: /usr/include/c++/11/bits/stl_vector.h:553:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 553 | vector(const vector& __x) | ^~~~~~ g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_allele_depth test_allele_depth.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_consensus_threshold.o test_consensus_threshold.cpp In file included from ../src/call_consensus_pileup.h:11, from test_consensus_threshold.cpp:2: ../src/allele_functions.h: In copy constructor ‘allele::allele(const allele&)’: ../src/allele_functions.h:8:8: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 8 | struct allele{ | ^~~~~~ g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_consensus_threshold test_consensus_threshold.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_consensus_min_depth.o test_consensus_min_depth.cpp g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_consensus_min_depth test_consensus_min_depth.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_consensus_seq_id.o test_consensus_seq_id.cpp g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_consensus_seq_id test_consensus_seq_id.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_primer_bed.o test_primer_bed.cpp g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_primer_bed test_primer_bed.o ../src/primer_bed.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_getmasked.o test_getmasked.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/get_masked_amplicons.o ../src/get_masked_amplicons.cpp In file included from /usr/include/c++/11/vector:72, from ../src/primer_bed.h:2, from ../src/get_masked_amplicons.h:6, from ../src/get_masked_amplicons.cpp:1: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const primer&}; _Tp = primer; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_getmasked test_getmasked.o ../src/get_masked_amplicons.o ../src/primer_bed.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_removereads.o test_removereads.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/remove_reads_from_amplicon.o ../src/remove_reads_from_amplicon.cpp ../src/remove_reads_from_amplicon.cpp: In function ‘int rmv_reads_from_amplicon(std::string, std::string, std::string, std::vector >, std::string, std::string)’: ../src/remove_reads_from_amplicon.cpp:3:5: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 3 | int rmv_reads_from_amplicon(std::string bam, std::string region_, std::string bam_out, std::vector amp, std::string bed, std::string cmd){ | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_removereads test_removereads.o ../src/remove_reads_from_amplicon.o ../src/primer_bed.o ../src/trim_primer_quality.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_variants.o test_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/call_variants.o ../src/call_variants.cpp In file included from /usr/include/c++/11/vector:72, from ../src/call_variants.h:5, from ../src/call_variants.cpp:1: /usr/include/c++/11/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const allele&}; _Tp = allele; _Alloc = std::allocator]’: /usr/include/c++/11/bits/vector.tcc:426:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/parse_gff.o ../src/parse_gff.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/ref_seq.o ../src/ref_seq.cpp g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_variants test_variants.o ../src/call_variants.o ../src/allele_functions.o ../src/parse_gff.o ../src/ref_seq.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_common_variants.o test_common_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o ../src/get_common_variants.o ../src/get_common_variants.cpp g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_common_variants test_common_variants.o ../src/get_common_variants.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_unpaired_trim.o test_unpaired_trim.cpp In file included from /usr/include/c++/11/vector:67, from ../src/trim_primer_quality.h:9, from test_unpaired_trim.cpp:2: /usr/include/c++/11/bits/stl_vector.h: In copy constructor ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = primer; _Alloc = std::allocator]’: /usr/include/c++/11/bits/stl_vector.h:553:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 553 | vector(const vector& __x) | ^~~~~~ g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_unpaired_trim test_unpaired_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_primer_trim_edge_cases.o test_primer_trim_edge_cases.cpp In file included from /usr/include/c++/11/vector:67, from ../src/trim_primer_quality.h:9, from test_primer_trim_edge_cases.cpp:2: /usr/include/c++/11/bits/stl_vector.h: In copy constructor ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = primer; _Alloc = std::allocator]’: /usr/include/c++/11/bits/stl_vector.h:553:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 553 | vector(const vector& __x) | ^~~~~~ g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_primer_trim_edge_cases test_primer_trim_edge_cases.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_isize_trim.o test_isize_trim.cpp g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_isize_trim test_isize_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_interval_tree.o test_interval_tree.cpp g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_interval_tree test_interval_tree.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -c -o test_amplicon_search.o test_amplicon_search.cpp test_amplicon_search.cpp: In function ‘int test_amplicon_search(std::string, std::string, std::string, int32_t, bool*)’: test_amplicon_search.cpp:8:5: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 8 | int test_amplicon_search(std::string bam_file, std::string bed_file, std::string pair_info_file, int32_t primer_offset, bool expected[]) | ^~~~~~~~~~~~~~~~~~~~ g++ -g -O3 -ffile-prefix-map=/<>/ivar-1.3.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -std=c++11 -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_amplicon_search test_amplicon_search.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread make[4]: Leaving directory '/<>/ivar-1.3.1+dfsg/tests' make check-TESTS make[4]: Entering directory '/<>/ivar-1.3.1+dfsg/tests' make[5]: Entering directory '/<>/ivar-1.3.1+dfsg/tests' PASS: check_primer_trim PASS: check_trim PASS: check_quality_trim PASS: check_consensus PASS: check_allele_depth PASS: check_consensus_threshold PASS: check_consensus_min_depth PASS: check_consensus_seq_id PASS: check_primer_bed PASS: check_getmasked PASS: check_removereads PASS: check_variants PASS: check_common_variants FAIL: check_unpaired_trim PASS: check_primer_trim_edge_cases PASS: check_isize_trim PASS: check_interval_tree PASS: check_amplicon_search ====================================== ivar 1.3.1: tests/test-suite.log ====================================== # TOTAL: 18 # PASS: 17 # SKIP: 0 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 .. contents:: :depth: 2 FAIL: check_unpaired_trim ========================= Found 8 primers in BED file test_72_280_12:1:0_11:0:0_2 Forward Reverse Cigar flag didn't match for test_72_280_12:1:0_11:0:0_2 ! Expected 2 Got 0 Cigar length didn't match for test_72_280_12:1:0_11:0:0_2 ! Expected 2 Got 1 Cigar flag didn't match for test_72_280_12:1:0_11:0:0_2 ! Expected 0 Got 4 Cigar length didn't match for test_72_280_12:1:0_11:0:0_2 ! Expected 1 Got 3 Cigar length didn't match for test_72_280_12:1:0_11:0:0_2 ! Expected 3 Got 2 Cigar length didn't match for test_72_280_12:1:0_11:0:0_2 ! Expected 2 Got 8 Condensing cigar ... Cigar length didn't match after condense! Expected 93 Got 94 Cigar flag didn't match! Expected  Got 4 Cigar length didn't match after condense! Expected 2 Got 13 test_92_337_8:0:0_10:0:0_21 Forward Reverse Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 0 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 1 Got 56 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 0 Got 6 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 56 Got 1 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 0 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 1 Got 6 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 0 Got 6 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 3 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 0 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 3 Got 99 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 0 Got 6 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 99 Got 2 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 0 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 2 Got 65 Condensing cigar ... Cigar length didn't match after condense! Expected 19 Got 75 Cigar length didn't match after condense! Expected 56 Got 6 Cigar length didn't match after condense! Expected 1 Got 3 Cigar length didn't match after condense! Expected 6 Got 99 Cigar length didn't match after condense! Expected 3 Got 2 Cigar length didn't match after condense! Expected 99 Got 65 test_147_337_11:1:0_11:1:0_11 Forward Reverse Condensing cigar ... test_149_298_7:0:0_11:0:0_d Forward Reverse Condensing cigar ... test_184_379_11:1:0_8:1:0_26 Forward Reverse Cigar flag didn't match for test_184_379_11:1:0_8:1:0_26 ! Expected 6 Got 0 Cigar length didn't match for test_184_379_11:1:0_8:1:0_26 ! Expected 2 Got 89 Cigar flag didn't match for test_184_379_11:1:0_8:1:0_26 ! Expected 0 Got 4 Cigar length didn't match for test_184_379_11:1:0_8:1:0_26 ! Expected 89 Got 18 Condensing cigar ... Cigar length didn't match after condense! Expected 71 Got 160 Cigar flag didn't match! Expected  Got 4 Cigar length didn't match after condense! Expected 2 Got 18 FAIL check_unpaired_trim (exit status: 255) ============================================================================ Testsuite summary for ivar 1.3.1 ============================================================================ # TOTAL: 18 # PASS: 17 # SKIP: 0 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 ============================================================================ See tests/test-suite.log Please report to gkarthik@scripps.edu ============================================================================ make[5]: *** [Makefile:905: test-suite.log] Error 1 make[5]: Leaving directory '/<>/ivar-1.3.1+dfsg/tests' make[4]: *** [Makefile:1013: check-TESTS] Error 2 make[4]: Leaving directory '/<>/ivar-1.3.1+dfsg/tests' make[3]: *** [Makefile:1205: check-am] Error 2 make[3]: Leaving directory '/<>/ivar-1.3.1+dfsg/tests' make[2]: *** [Makefile:362: check-recursive] Error 1 make[2]: Leaving directory '/<>/ivar-1.3.1+dfsg' dh_auto_test: error: make -j1 check VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:16: override_dh_auto_test] Error 25 make[1]: Leaving directory '/<>/ivar-1.3.1+dfsg' make: *** [debian/rules:12: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2021-09-24T10:43:27Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: n/a Build-Time: 61 Distribution: impish-proposed Fail-Stage: build Host Architecture: ppc64el Install-Time: 9 Job: ivar_1.3.1+dfsg-4.dsc Machine Architecture: ppc64el Package: ivar Package-Time: 72 Source-Version: 1.3.1+dfsg-4 Space: n/a Status: attempted Version: 1.3.1+dfsg-4 -------------------------------------------------------------------------------- Finished at 2021-09-24T10:43:27Z Build needed 00:01:12, no disk space E: Build failure (dpkg-buildpackage died) Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=impish --arch=ppc64el PACKAGEBUILD-22110960 Scanning for processes to kill in build PACKAGEBUILD-22110960