https://launchpad.net/ubuntu/+source/ivar/1.4.2+dfsg-2ubuntu1/+build/26752091 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos01-ppc64el-006 5.4.0-163-generic #180-Ubuntu SMP Tue Sep 5 13:23:09 UTC 2023 ppc64le Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 4 Oct 11:47:06 ntpdate[1965]: adjust time server 10.211.37.1 offset -0.005670 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=mantic --arch=ppc64el PACKAGEBUILD-26752091 --image-type chroot /home/buildd/filecache-default/5b5928f2de004621e204a4a924f10b4b728ac2cf Creating target for build PACKAGEBUILD-26752091 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=mantic --arch=ppc64el PACKAGEBUILD-26752091 Starting target for build PACKAGEBUILD-26752091 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=mantic --arch=ppc64el PACKAGEBUILD-26752091 'deb http://ftpmaster.internal/ubuntu mantic main universe' 'deb http://ftpmaster.internal/ubuntu mantic-security main universe' 'deb http://ftpmaster.internal/ubuntu mantic-updates main universe' 'deb http://ftpmaster.internal/ubuntu mantic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-26752091 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=mantic --arch=ppc64el PACKAGEBUILD-26752091 Updating target for build PACKAGEBUILD-26752091 Get:1 http://ftpmaster.internal/ubuntu mantic InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu mantic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu mantic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu mantic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main ppc64el Packages [1350 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main Translation-en [517 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/universe ppc64el Packages [14.5 MB] Get:8 http://ftpmaster.internal/ubuntu mantic/universe Translation-en [5951 kB] Get:9 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el Packages [39.7 kB] Get:10 http://ftpmaster.internal/ubuntu mantic-proposed/main Translation-en [17.7 kB] Get:11 http://ftpmaster.internal/ubuntu mantic-proposed/universe ppc64el Packages [54.6 kB] Get:12 http://ftpmaster.internal/ubuntu mantic-proposed/universe Translation-en [39.3 kB] Fetched 23.0 MB in 5s (5058 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libc-bin libc-dev-bin libc6 libc6-dev libgcrypt20 linux-libc-dev 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 8384 kB of archives. After this operation, 1153 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libc6-dev ppc64el 2.38-1ubuntu6 [2083 kB] Get:2 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libc-dev-bin ppc64el 2.38-1ubuntu6 [21.0 kB] Get:3 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el linux-libc-dev ppc64el 6.5.0-7.7 [1552 kB] Get:4 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libc6 ppc64el 2.38-1ubuntu6 [3244 kB] Get:5 http://ftpmaster.internal/ubuntu mantic-proposed/main ppc64el libc-bin ppc64el 2.38-1ubuntu6 [744 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main ppc64el libgcrypt20 ppc64el 1.10.2-3ubuntu1 [740 kB] Preconfiguring packages ... Fetched 8384 kB in 1s (8186 kB/s) (Reading database ... 13550 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.38-1ubuntu6_ppc64el.deb ... Unpacking libc6-dev:ppc64el (2.38-1ubuntu6) over (2.38-1ubuntu4) ... Preparing to unpack .../libc-dev-bin_2.38-1ubuntu6_ppc64el.deb ... Unpacking libc-dev-bin (2.38-1ubuntu6) over (2.38-1ubuntu4) ... Preparing to unpack .../linux-libc-dev_6.5.0-7.7_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (6.5.0-7.7) over (6.5.0-5.5) ... Preparing to unpack .../libc6_2.38-1ubuntu6_ppc64el.deb ... Unpacking libc6:ppc64el (2.38-1ubuntu6) over (2.38-1ubuntu4) ... Setting up libc6:ppc64el (2.38-1ubuntu6) ... (Reading database ... 13550 files and directories currently installed.) Preparing to unpack .../libc-bin_2.38-1ubuntu6_ppc64el.deb ... Unpacking libc-bin (2.38-1ubuntu6) over (2.38-1ubuntu4) ... Setting up libc-bin (2.38-1ubuntu6) ... (Reading database ... 13550 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.2-3ubuntu1_ppc64el.deb ... Unpacking libgcrypt20:ppc64el (1.10.2-3ubuntu1) over (1.10.2-2ubuntu1) ... Setting up libgcrypt20:ppc64el (1.10.2-3ubuntu1) ... Setting up linux-libc-dev:ppc64el (6.5.0-7.7) ... Setting up libc-dev-bin (2.38-1ubuntu6) ... Setting up libc6-dev:ppc64el (2.38-1ubuntu6) ... Processing triggers for libc-bin (2.38-1ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-26752091 ppc64el mantic-proposed -c chroot:build-PACKAGEBUILD-26752091 --arch=ppc64el --dist=mantic-proposed --nolog ivar_1.4.2+dfsg-2ubuntu1.dsc Initiating build PACKAGEBUILD-26752091 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-163-generic #180-Ubuntu SMP Tue Sep 5 13:23:09 UTC 2023 ppc64le sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos01-ppc64el-006.buildd +==============================================================================+ | ivar 1.4.2+dfsg-2ubuntu1 (ppc64el) Wed, 04 Oct 2023 11:47:21 +0000 | +==============================================================================+ Package: ivar Version: 1.4.2+dfsg-2ubuntu1 Source Version: 1.4.2+dfsg-2ubuntu1 Distribution: mantic-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-26752091/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/ivar-0TD2Wp/resolver-fa85yQ' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ivar_1.4.2+dfsg-2ubuntu1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/ivar-0TD2Wp/ivar-1.4.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/ivar-0TD2Wp' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libhts-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), libhts-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [377 B] Get:5 copy:/<>/apt_archive ./ Packages [461 B] Fetched 1795 B in 0s (125 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl openssl psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1 libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu72 libldap2 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1 libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu72 libldap2 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 29.7 MB of archives. After this operation, 98.9 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [674 B] Get:2 http://ftpmaster.internal/ubuntu mantic/main ppc64el libelf1 ppc64el 0.189-4 [66.3 kB] Get:3 http://ftpmaster.internal/ubuntu mantic/main ppc64el libicu72 ppc64el 72.1-3ubuntu3 [11.2 MB] Get:4 http://ftpmaster.internal/ubuntu mantic/main ppc64el libxml2 ppc64el 2.9.14+dfsg-1.3 [822 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main ppc64el libmagic-mgc ppc64el 1:5.44-3 [293 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main ppc64el libmagic1 ppc64el 1:5.44-3 [104 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/main ppc64el file ppc64el 1:5.44-3 [22.4 kB] Get:8 http://ftpmaster.internal/ubuntu mantic/main ppc64el gettext-base ppc64el 0.21-13 [42.3 kB] Get:9 http://ftpmaster.internal/ubuntu mantic/main ppc64el libuchardet0 ppc64el 0.0.7-1build2 [80.4 kB] Get:10 http://ftpmaster.internal/ubuntu mantic/main ppc64el groff-base ppc64el 1.23.0-2 [1105 kB] Get:11 http://ftpmaster.internal/ubuntu mantic/main ppc64el libnghttp2-14 ppc64el 1.55.1-1 [87.4 kB] Get:12 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpipeline1 ppc64el 1.5.7-1 [25.8 kB] Get:13 http://ftpmaster.internal/ubuntu mantic/main ppc64el libpsl5 ppc64el 0.21.2-1 [60.6 kB] Get:14 http://ftpmaster.internal/ubuntu mantic/main ppc64el man-db ppc64el 2.11.2-3 [1260 kB] Get:15 http://ftpmaster.internal/ubuntu mantic/main ppc64el m4 ppc64el 1.4.19-3 [275 kB] Get:16 http://ftpmaster.internal/ubuntu mantic/main ppc64el autoconf all 2.71-3 [339 kB] Get:17 http://ftpmaster.internal/ubuntu mantic/main ppc64el autotools-dev all 20220109.1 [44.9 kB] Get:18 http://ftpmaster.internal/ubuntu mantic/main ppc64el automake all 1:1.16.5-1.3 [558 kB] Get:19 http://ftpmaster.internal/ubuntu mantic/main ppc64el autopoint all 0.21-13 [422 kB] Get:20 http://ftpmaster.internal/ubuntu mantic/main ppc64el libdebhelper-perl all 13.11.6ubuntu1 [85.4 kB] Get:21 http://ftpmaster.internal/ubuntu mantic/main ppc64el libtool all 2.4.7-7 [166 kB] Get:22 http://ftpmaster.internal/ubuntu mantic/main ppc64el dh-autoreconf all 20 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu mantic/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:24 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsub-override-perl all 0.09-4 [8706 B] Get:25 http://ftpmaster.internal/ubuntu mantic/main ppc64el libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:26 http://ftpmaster.internal/ubuntu mantic/main ppc64el dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:27 http://ftpmaster.internal/ubuntu mantic/main ppc64el libdw1 ppc64el 0.189-4 [292 kB] Get:28 http://ftpmaster.internal/ubuntu mantic/main ppc64el debugedit ppc64el 1:5.0-5 [51.1 kB] Get:29 http://ftpmaster.internal/ubuntu mantic/main ppc64el dwz ppc64el 0.15-1 [139 kB] Get:30 http://ftpmaster.internal/ubuntu mantic/main ppc64el gettext ppc64el 0.21-13 [970 kB] Get:31 http://ftpmaster.internal/ubuntu mantic/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:32 http://ftpmaster.internal/ubuntu mantic/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] Get:33 http://ftpmaster.internal/ubuntu mantic/main ppc64el debhelper all 13.11.6ubuntu1 [935 kB] Get:34 http://ftpmaster.internal/ubuntu mantic/main ppc64el libbrotli1 ppc64el 1.0.9-2build8 [370 kB] Get:35 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg1-3 [22.9 kB] Get:36 http://ftpmaster.internal/ubuntu mantic/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg1-3 [65.5 kB] Get:37 http://ftpmaster.internal/ubuntu mantic/main ppc64el libldap2 ppc64el 2.6.6+dfsg-1~exp1ubuntu1 [228 kB] Get:38 http://ftpmaster.internal/ubuntu mantic/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build4 [65.5 kB] Get:39 http://ftpmaster.internal/ubuntu mantic/main ppc64el libssh-4 ppc64el 0.10.5-3ubuntu1 [238 kB] Get:40 http://ftpmaster.internal/ubuntu mantic/main ppc64el libcurl3-gnutls ppc64el 8.2.1-1ubuntu3 [395 kB] Get:41 http://ftpmaster.internal/ubuntu mantic/main ppc64el libcurl4-gnutls-dev ppc64el 8.2.1-1ubuntu3 [502 kB] Get:42 http://ftpmaster.internal/ubuntu mantic/main ppc64el libdeflate0 ppc64el 1.18-1 [58.4 kB] Get:43 http://ftpmaster.internal/ubuntu mantic/main ppc64el libdeflate-dev ppc64el 1.18-1 [65.8 kB] Get:44 http://ftpmaster.internal/ubuntu mantic/universe ppc64el libhtscodecs2 ppc64el 1.5.1-1 [108 kB] Get:45 http://ftpmaster.internal/ubuntu mantic/universe ppc64el libhts3 ppc64el 1.17+ds-1 [543 kB] Get:46 http://ftpmaster.internal/ubuntu mantic/main ppc64el liblzma-dev ppc64el 5.4.1-0.2 [202 kB] Get:47 http://ftpmaster.internal/ubuntu mantic/main ppc64el zlib1g-dev ppc64el 1:1.2.13.dfsg-1ubuntu5 [901 kB] Get:48 http://ftpmaster.internal/ubuntu mantic/universe ppc64el libhts-dev ppc64el 1.17+ds-1 [6146 kB] Preconfiguring packages ... Fetched 29.7 MB in 2s (14.5 MB/s) Selecting previously unselected package libelf1:ppc64el. (Reading database ... 13550 files and directories currently installed.) Preparing to unpack .../00-libelf1_0.189-4_ppc64el.deb ... Unpacking libelf1:ppc64el (0.189-4) ... Selecting previously unselected package libicu72:ppc64el. Preparing to unpack .../01-libicu72_72.1-3ubuntu3_ppc64el.deb ... Unpacking libicu72:ppc64el (72.1-3ubuntu3) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../02-libxml2_2.9.14+dfsg-1.3_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.14+dfsg-1.3) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.44-3_ppc64el.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../04-libmagic1_1%3a5.44-3_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.44-3_ppc64el.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-13_ppc64el.deb ... Unpacking gettext-base (0.21-13) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../07-libuchardet0_0.0.7-1build2_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.7-1build2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-2_ppc64el.deb ... Unpacking groff-base (1.23.0-2) ... Selecting previously unselected package libnghttp2-14:ppc64el. Preparing to unpack .../09-libnghttp2-14_1.55.1-1_ppc64el.deb ... Unpacking libnghttp2-14:ppc64el (1.55.1-1) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../10-libpipeline1_1.5.7-1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.7-1) ... Selecting previously unselected package libpsl5:ppc64el. Preparing to unpack .../11-libpsl5_0.21.2-1_ppc64el.deb ... Unpacking libpsl5:ppc64el (0.21.2-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.11.2-3_ppc64el.deb ... Unpacking man-db (2.11.2-3) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-3_ppc64el.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.21-13_all.deb ... Unpacking autopoint (0.21-13) ... 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Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libdw1:ppc64el. Preparing to unpack .../25-libdw1_0.189-4_ppc64el.deb ... Unpacking libdw1:ppc64el (0.189-4) ... Selecting previously unselected package debugedit. Preparing to unpack .../26-debugedit_1%3a5.0-5_ppc64el.deb ... Unpacking debugedit (1:5.0-5) ... Selecting previously unselected package dwz. Preparing to unpack .../27-dwz_0.15-1_ppc64el.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.21-13_ppc64el.deb ... Unpacking gettext (0.21-13) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.11.6ubuntu1_all.deb ... Unpacking debhelper (13.11.6ubuntu1) ... Selecting previously unselected package libbrotli1:ppc64el. Preparing to unpack .../32-libbrotli1_1.0.9-2build8_ppc64el.deb ... Unpacking libbrotli1:ppc64el (1.0.9-2build8) ... Selecting previously unselected package libsasl2-modules-db:ppc64el. Preparing to unpack .../33-libsasl2-modules-db_2.1.28+dfsg1-3_ppc64el.deb ... Unpacking libsasl2-modules-db:ppc64el (2.1.28+dfsg1-3) ... Selecting previously unselected package libsasl2-2:ppc64el. Preparing to unpack .../34-libsasl2-2_2.1.28+dfsg1-3_ppc64el.deb ... Unpacking libsasl2-2:ppc64el (2.1.28+dfsg1-3) ... Selecting previously unselected package libldap2:ppc64el. 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Selecting previously unselected package libhts-dev:ppc64el. Preparing to unpack .../46-libhts-dev_1.17+ds-1_ppc64el.deb ... Unpacking libhts-dev:ppc64el (1.17+ds-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../47-sbuild-build-depends-main-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libhtscodecs2:ppc64el (1.5.1-1) ... Setting up libpipeline1:ppc64el (1.5.7-1) ... Setting up libpsl5:ppc64el (0.21.2-1) ... Setting up libicu72:ppc64el (72.1-3ubuntu3) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.6ubuntu1) ... Setting up libbrotli1:ppc64el (1.0.9-2build8) ... Setting up libnghttp2-14:ppc64el (1.55.1-1) ... Setting up libmagic1:ppc64el (1:5.44-3) ... Setting up libdeflate0:ppc64el (1.18-1) ... Setting up gettext-base (0.21-13) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libsasl2-modules-db:ppc64el (2.1.28+dfsg1-3) ... Setting up autotools-dev (20220109.1) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build4) ... Setting up autopoint (0.21-13) ... Setting up libsasl2-2:ppc64el (2.1.28+dfsg1-3) ... Setting up libssh-4:ppc64el (0.10.5-3ubuntu1) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:ppc64el (5.4.1-0.2) ... Setting up zlib1g-dev:ppc64el (1:1.2.13.dfsg-1ubuntu5) ... Setting up libuchardet0:ppc64el (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libdeflate-dev:ppc64el (1.18-1) ... Setting up libelf1:ppc64el (0.189-4) ... Setting up libxml2:ppc64el (2.9.14+dfsg-1.3) ... Setting up libldap2:ppc64el (2.6.6+dfsg-1~exp1ubuntu1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libdw1:ppc64el (0.189-4) ... Setting up gettext (0.21-13) ... Setting up libtool (2.4.7-7) ... Setting up libcurl3-gnutls:ppc64el (8.2.1-1ubuntu3) ... Setting up libcurl4-gnutls-dev:ppc64el (8.2.1-1ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-2) ... Setting up debugedit (1:5.0-5) ... Setting up libhts3:ppc64el (1.17+ds-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhts-dev:ppc64el (1.17+ds-1) ... Setting up man-db (2.11.2-3) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up debhelper (13.11.6ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-1ubuntu6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-163-generic #180-Ubuntu SMP Tue Sep 5 13:23:09 UTC 2023 ppc64el (ppc64le) Toolchain package versions: binutils_2.41-5ubuntu1 dpkg-dev_1.22.0ubuntu1 g++-13_13.2.0-4ubuntu3 gcc-13_13.2.0-4ubuntu3 libc6-dev_2.38-1ubuntu6 libstdc++-13-dev_13.2.0-4ubuntu3 libstdc++6_13.2.0-4ubuntu3 linux-libc-dev_6.5.0-7.7 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.3 apt-utils_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13ubuntu1 base-passwd_3.6.1 bash_5.2.15-2ubuntu1 bash-completion_1:2.11-7 binutils_2.41-5ubuntu1 binutils-common_2.41-5ubuntu1 binutils-powerpc64le-linux-gnu_2.41-5ubuntu1 bsdextrautils_2.39.1-4ubuntu1 bsdutils_1:2.39.1-4ubuntu1 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 coreutils_9.1-1ubuntu2 cpp_4:13.2.0-1ubuntu1 cpp-13_13.2.0-4ubuntu3 dash_0.5.12-6ubuntu1 debconf_1.5.82 debconf-i18n_1.5.82 debhelper_13.11.6ubuntu1 debianutils_5.8-1 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.22.0ubuntu1 dpkg-dev_1.22.0ubuntu1 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.1-1 file_1:5.44-3 findutils_4.9.0-5 g++_4:13.2.0-1ubuntu1 g++-13_13.2.0-4ubuntu3 gcc_4:13.2.0-1ubuntu1 gcc-13_13.2.0-4ubuntu3 gcc-13-base_13.2.0-4ubuntu3 gettext_0.21-13 gettext-base_0.21-13 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 gpgv_2.2.40-1.1ubuntu1 grep_3.11-2 groff-base_1.23.0-2 gzip_1.12-1ubuntu1 hostname_3.23+nmu1ubuntu1 init_1.65.2ubuntu1 init-system-helpers_1.65.2ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-3ubuntu1 libacl1_2.3.1-3 libapparmor1_4.0.0~alpha2-0ubuntu5 libapt-pkg6.0_2.7.3 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-3 libasan8_13.2.0-4ubuntu3 libassuan0_2.5.6-1 libatomic1_13.2.0-4ubuntu3 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.41-5ubuntu1 libblkid1_2.39.1-4ubuntu1 libbrotli1_1.0.9-2build8 libbz2-1.0_1.0.8-5build1 libc-bin_2.38-1ubuntu6 libc-dev-bin_2.38-1ubuntu6 libc6_2.38-1ubuntu6 libc6-dev_2.38-1ubuntu6 libcap-ng0_0.8.3-1build2 libcap2_1:2.66-4ubuntu1 libcc1-0_13.2.0-4ubuntu3 libcom-err2_1.47.0-2ubuntu1 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libcryptsetup12_2:2.6.1-4ubuntu3 libctf-nobfd0_2.41-5ubuntu1 libctf0_2.41-5ubuntu1 libcurl3-gnutls_8.2.1-1ubuntu3 libcurl4-gnutls-dev_8.2.1-1ubuntu3 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270ubuntu1 libdebhelper-perl_13.11.6ubuntu1 libdeflate-dev_1.18-1 libdeflate0_1.18-1 libdevmapper1.02.1_2:1.02.185-2ubuntu1 libdpkg-perl_1.22.0ubuntu1 libdw1_0.189-4 libelf1_0.189-4 libext2fs2_1.47.0-2ubuntu1 libfakeroot_1.32.1-1 libfdisk1_2.39.1-4ubuntu1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-4ubuntu3 libgcc-s1_13.2.0-4ubuntu3 libgcrypt20_1.10.2-3ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.3.0+dfsg-2ubuntu4 libgnutls30_3.8.1-4ubuntu1 libgomp1_13.2.0-4ubuntu3 libgpg-error-l10n_1.47-2 libgpg-error0_1.47-2 libgpm2_1.20.7-10build1 libgssapi-krb5-2_1.20.1-3ubuntu1 libhogweed6_3.9.1-2 libhts-dev_1.17+ds-1 libhts3_1.17+ds-1 libhtscodecs2_1.5.1-1 libicu72_72.1-3ubuntu3 libidn2-0_2.3.4-1 libip4tc2_1.8.9-2ubuntu2 libisl23_0.26-3 libitm1_13.2.0-4ubuntu3 libjansson4_2.14-2 libjson-c5_0.17-1 libk5crypto3_1.20.1-3ubuntu1 libkeyutils1_1.6.3-2 libkmod2_30+20230519-1ubuntu3 libkrb5-3_1.20.1-3ubuntu1 libkrb5support0_1.20.1-3ubuntu1 libldap2_2.6.6+dfsg-1~exp1ubuntu1 liblocale-gettext-perl_1.07-6 liblockfile-bin_1.17-1build2 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libsmartcols1_2.39.1-4ubuntu1 libsqlite3-0_3.42.0-1 libss2_1.47.0-2ubuntu1 libssh-4_0.10.5-3ubuntu1 libssl3_3.0.10-1ubuntu2 libstdc++-13-dev_13.2.0-4ubuntu3 libstdc++6_13.2.0-4ubuntu3 libsub-override-perl_0.09-4 libsystemd-shared_253.5-1ubuntu6 libsystemd0_253.5-1ubuntu6 libtasn1-6_4.19.0-3 libtext-charwidth-perl_0.04-11 libtext-iconv-perl_1.7-8 libtext-wrapi18n-perl_0.06-10 libtinfo6_6.4+20230625-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-7 libtsan2_13.2.0-4ubuntu3 libubsan1_13.2.0-4ubuntu3 libuchardet0_0.0.7-1build2 libudev1_253.5-1ubuntu6 libunistring2_1.0-2 libuuid1_2.39.1-4ubuntu1 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.1-1 libzstd1_1.5.5+dfsg2-1ubuntu2 linux-libc-dev_6.5.0-7.7 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.47.0-2ubuntu1 lto-disabled-list_43 m4_1.4.19-3 make_4.3-4.1build1 man-db_2.11.2-3 mawk_1.3.4.20230730-1 mount_2.39.1-4ubuntu1 ncurses-base_6.4+20230625-2 ncurses-bin_6.4+20230625-2 openssl_3.0.10-1ubuntu2 optipng_0.7.7-2build1 passwd_1:4.13+dfsg1-1ubuntu1 patch_2.7.6-7build2 perl_5.36.0-9ubuntu1 perl-base_5.36.0-9ubuntu1 perl-modules-5.36_5.36.0-9ubuntu1 pinentry-curses_1.2.1-1ubuntu1 pkgbinarymangler_154 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.3-1ubuntu1 psmisc_23.6-1 readline-common_8.2-1.3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 systemd_253.5-1ubuntu6 systemd-dev_253.5-1ubuntu6 systemd-sysv_253.5-1ubuntu6 sysvinit-utils_3.07-1ubuntu1 tar_1.34+dfsg-1.2ubuntu1 tzdata_2023c-9ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_35ubuntu1 util-linux_2.39.1-4ubuntu1 uuid-runtime_2.39.1-4ubuntu1 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1ubuntu5 zlib1g-dev_1:1.2.13.dfsg-1ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ivar Binary: ivar, ivar-doc Architecture: any all Version: 1.4.2+dfsg-2ubuntu1 Maintainer: Ubuntu Developers Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/andersen-lab/ivar Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/ivar Vcs-Git: https://salsa.debian.org/med-team/ivar.git Testsuite: autopkgtest Testsuite-Triggers: samtools Build-Depends: debhelper-compat (= 13), libhts-dev Package-List: ivar deb science optional arch=any ivar-doc deb doc optional arch=all Checksums-Sha1: 8424d860241b5fdb7cfbb71d8d8d85d6d9162962 672788 ivar_1.4.2+dfsg.orig.tar.xz 3168ebb0067dfae76b6c9f85d1c0f43efe3fd19f 46264 ivar_1.4.2+dfsg-2ubuntu1.debian.tar.xz Checksums-Sha256: 87fbc667080e95823734eeca0dfcec058ff18f1aca7aff89de7a82217a7d2968 672788 ivar_1.4.2+dfsg.orig.tar.xz 3fec41e1a67e7670c7cff180ff5e565a59f1240c9603a6642b2a3c3e1f2f7c12 46264 ivar_1.4.2+dfsg-2ubuntu1.debian.tar.xz Files: d2c0875cd8d094e11207d0d185099282 672788 ivar_1.4.2+dfsg.orig.tar.xz d5eb0ed55db68fff481c6bb5471aaba5 46264 ivar_1.4.2+dfsg-2ubuntu1.debian.tar.xz Original-Maintainer: Debian Med Packaging Team -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEJeP/LX9Gnb59DU5Qr8/sjmac4cIFAmUdT+YACgkQr8/sjmac 4cLEhg/+LHuBmMW1Ol8i1nfV2yWMvUO45FeCWDjjm9unp4WBww6mE97CVyBQG1Re Df7jEk1fCsGH3T/CgqKZedgkkNNQeWVZfPR/KZ4UIZgizcIWKl8r0JwTBGP0YkYD c4bC1DkTlGfhCn+h5QstHC+hClOqxyU0Oyy8aVjEuMKKmRHnzUBF0pH/B1ND/vLP BepRRAady1HRlnqIlIRZyMbqmgSeLRKzHKpvMiF75qfwbsuEVanneBeL34rnUbLi wz0XU0p7S7TCAsnPiUYTbqpzz5nC4rFiqYCKAZerFxARjjdU3jLxNZdbnGZJ3Uok T6QCkrDvwXrcFrNYxPWY/kdIrG9v/FPFbIe+UTcMePPPW4/3C14yIbb8sWH/L3tv ExpByLz4JVZF2o6hQDuHKXoMg3F7QCAuZ9jnwJX0HjS8DJLOUzTs8JcxUYVDS6uP EUMqeceEgYIKwexMDmO50Inoa2K1VVvd+c29pgKOo64Pf1K99flkbXFY+U6Zyimp LDXy1Jc1LT/YAf/8+sUh+ifPX531IWg3UeNxVTIdbosgP+w8ujN5uzNtTUG3KRX0 lHw7wxY1SsAM6LaT3gudux0NX1LVzN7YrdpvMry8HcAOySMmSAv5ddGu6vksNGj9 eP8NE/Iw/JjMK2VFPaG62qO2Mjwo/ENnb/Ng5JAR4b26OhUqS8E= =qDfj -----END PGP SIGNATURE----- gpgv: Signature made Wed Oct 4 11:43:34 2023 UTC gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ivar_1.4.2+dfsg-2ubuntu1.dsc: no acceptable signature found dpkg-source: info: extracting ivar in /<> dpkg-source: info: unpacking ivar_1.4.2+dfsg.orig.tar.xz dpkg-source: info: unpacking ivar_1.4.2+dfsg-2ubuntu1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix-warning.patch dpkg-source: info: applying forward-build-options.patch dpkg-source: info: applying privacy-breach.patch dpkg-source: info: applying gcc-13.patch dpkg-source: info: applying gcc-13-2.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-26752091 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-26752091 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-26752091 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package ivar dpkg-buildpackage: info: source version 1.4.2+dfsg-2ubuntu1 dpkg-buildpackage: info: source distribution mantic dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f data/db/test_ref.fa.fai data/test.gap.fa data/test.gap.qual.txt data/test.indel.tsv data/test.masked_primer_indices.txt data/test.trimmed.masked.bam data/test.trimmed.masked.bam.bai data/test.trimmed.sorted.bam.bai data/test.unmapped.sorted.bam.bai make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:12: installing './compile' configure.ac:58: installing './config.guess' configure.ac:58: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=powerpc64le-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/powerpc64le-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gawk... (cached) mawk checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for main in -lhts... no checking for main in -lpthread... no checking for main in -lz... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for int16_t... yes checking for int32_t... yes checking for int8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint8_t... yes checking build system type... powerpc64le-unknown-linux-gnu checking host system type... powerpc64le-unknown-linux-gnu checking for GNU libc compatible malloc... no checking for GNU libc compatible realloc... no checking for memmove... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -a make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -v -g -Wall -Wextra -Werror -c -o ivar.o ivar.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -v -g -Wall -Wextra -Werror -c -o call_consensus_pileup.o call_consensus_pileup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -v -g -Wall -Wextra -Werror -c -o alignment.o alignment.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -v -g -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp Using built-in specs. Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 13.2.0-4ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-13-76Bzr2/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Ubuntu 13.2.0-4ubuntu3) COLLECT_GCC=g++ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' 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'-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mcpu=power9' /usr/libexec/gcc/powerpc64le-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -msecure-plt -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccqT1jij.s Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 13.2.0-4ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-13-76Bzr2/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Ubuntu 13.2.0-4ubuntu3) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mcpu=power9' /usr/libexec/gcc/powerpc64le-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 alignment.cpp -msecure-plt -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/cciaoFA6.s Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 13.2.0-4ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-13-76Bzr2/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Ubuntu 13.2.0-4ubuntu3) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' 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GNU C++17 (Ubuntu 13.2.0-4ubuntu3) version 13.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../include/powerpc64-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/include-fixed/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/13 /usr/include/powerpc64le-linux-gnu/c++/13 /usr/include/c++/13/backward /usr/lib/gcc/powerpc64le-linux-gnu/13/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. GNU C++17 (Ubuntu 13.2.0-4ubuntu3) version 13.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../include/powerpc64-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/include-fixed/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/13 /usr/include/powerpc64le-linux-gnu/c++/13 /usr/include/c++/13/backward /usr/lib/gcc/powerpc64le-linux-gnu/13/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. Compiler executable checksum: 0e22b47951b001a932ab8fb39a0a80bc Compiler executable checksum: 0e22b47951b001a932ab8fb39a0a80bc Compiler executable checksum: 0e22b47951b001a932ab8fb39a0a80bc GNU C++17 (Ubuntu 13.2.0-4ubuntu3) version 13.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../include/powerpc64-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/include-fixed/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/13 /usr/include/powerpc64le-linux-gnu/c++/13 /usr/include/c++/13/backward /usr/lib/gcc/powerpc64le-linux-gnu/13/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. Compiler executable checksum: 0e22b47951b001a932ab8fb39a0a80bc COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' 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COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 13.2.0-4ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-13-76Bzr2/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Ubuntu 13.2.0-4ubuntu3) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mcpu=power9' /usr/libexec/gcc/powerpc64le-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 trim_primer_quality.cpp -msecure-plt -quiet -dumpbase trim_primer_quality.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccRbJcUR.s GNU C++17 (Ubuntu 13.2.0-4ubuntu3) version 13.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../include/powerpc64-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/include-fixed/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/13 /usr/include/powerpc64le-linux-gnu/c++/13 /usr/include/c++/13/backward /usr/lib/gcc/powerpc64le-linux-gnu/13/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. Compiler executable checksum: 0e22b47951b001a932ab8fb39a0a80bc COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' 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COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 13.2.0-4ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-13-76Bzr2/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Ubuntu 13.2.0-4ubuntu3) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' 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Compiler executable checksum: 0e22b47951b001a932ab8fb39a0a80bc COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o suffix_tree.o /tmp/ccIVDwzN.s GNU assembler version 2.41 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.41 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' 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COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 13.2.0-4ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-13-76Bzr2/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Ubuntu 13.2.0-4ubuntu3) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' 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Compiler executable checksum: 0e22b47951b001a932ab8fb39a0a80bc MAKEFLAGS=w -j4 COMPILER_PATH=/usr/libexec/gcc/powerpc64le-linux-gnu/13/:/usr/libexec/gcc/powerpc64le-linux-gnu/13/:/usr/libexec/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/13/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/13/:/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' 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COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 13.2.0-4ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-13-76Bzr2/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Ubuntu 13.2.0-4ubuntu3) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' 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Compiler executable checksum: 0e22b47951b001a932ab8fb39a0a80bc COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' 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COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 13.2.0-4ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-13-76Bzr2/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Ubuntu 13.2.0-4ubuntu3) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' 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Compiler executable checksum: 0e22b47951b001a932ab8fb39a0a80bc COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' 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COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 13.2.0-4ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-13-76Bzr2/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Ubuntu 13.2.0-4ubuntu3) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' 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Compiler executable checksum: 0e22b47951b001a932ab8fb39a0a80bc COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' 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COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 13.2.0-4ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-13-76Bzr2/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Ubuntu 13.2.0-4ubuntu3) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' 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Compiler executable checksum: 0e22b47951b001a932ab8fb39a0a80bc COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' 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COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 13.2.0-4ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-13-76Bzr2/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Ubuntu 13.2.0-4ubuntu3) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mcpu=power9' /usr/libexec/gcc/powerpc64le-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 parse_gff.cpp -msecure-plt -quiet -dumpbase parse_gff.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccRYGtcL.s GNU C++17 (Ubuntu 13.2.0-4ubuntu3) version 13.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../include/powerpc64-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/include-fixed/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/13 /usr/include/powerpc64le-linux-gnu/c++/13 /usr/include/c++/13/backward /usr/lib/gcc/powerpc64le-linux-gnu/13/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. Compiler executable checksum: 0e22b47951b001a932ab8fb39a0a80bc COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o get_masked_amplicons.o /tmp/ccRETF4c.s GNU assembler version 2.41 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.41 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/libexec/gcc/powerpc64le-linux-gnu/13/:/usr/libexec/gcc/powerpc64le-linux-gnu/13/:/usr/libexec/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/13/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/13/:/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'get_masked_amplicons.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -v -g -Wall -Wextra -Werror -c -o ref_seq.o ref_seq.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 13.2.0-4ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-13-76Bzr2/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Ubuntu 13.2.0-4ubuntu3) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mcpu=power9' /usr/libexec/gcc/powerpc64le-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ref_seq.cpp -msecure-plt -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/cciZgzqJ.s GNU C++17 (Ubuntu 13.2.0-4ubuntu3) version 13.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../include/powerpc64-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/include-fixed/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/13 /usr/include/powerpc64le-linux-gnu/c++/13 /usr/include/c++/13/backward /usr/lib/gcc/powerpc64le-linux-gnu/13/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. Compiler executable checksum: 0e22b47951b001a932ab8fb39a0a80bc COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o primer_bed.o /tmp/ccorOjMX.s GNU assembler version 2.41 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.41 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o get_common_variants.o /tmp/ccQlTdQ7.s GNU assembler version 2.41 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.41 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/libexec/gcc/powerpc64le-linux-gnu/13/:/usr/libexec/gcc/powerpc64le-linux-gnu/13/:/usr/libexec/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/13/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/13/:/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'get_common_variants.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -v -g -Wall -Wextra -Werror -c -o interval_tree.o interval_tree.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 13.2.0-4ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-13-76Bzr2/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Ubuntu 13.2.0-4ubuntu3) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mcpu=power9' /usr/libexec/gcc/powerpc64le-linux-gnu/13/cc1plus -quiet -v -I . -I .. -imultiarch powerpc64le-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -msecure-plt -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mcpu=power9 -g -g -O3 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -fasynchronous-unwind-tables -fstack-protector-strong -Wformat-security -fstack-clash-protection -o /tmp/ccSOoR0Q.s GNU C++17 (Ubuntu 13.2.0-4ubuntu3) version 13.2.0 (powerpc64le-linux-gnu) compiled by GNU C version 13.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.26-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../include/powerpc64-linux-gnu/c++/13" ignoring nonexistent directory "/usr/local/include/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/include-fixed/powerpc64le-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../powerpc64le-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/13 /usr/include/powerpc64le-linux-gnu/c++/13 /usr/include/c++/13/backward /usr/lib/gcc/powerpc64le-linux-gnu/13/include /usr/local/include /usr/include/powerpc64le-linux-gnu /usr/include End of search list. Compiler executable checksum: 0e22b47951b001a932ab8fb39a0a80bc MAKEFLAGS=w -j4 COMPILER_PATH=/usr/libexec/gcc/powerpc64le-linux-gnu/13/:/usr/libexec/gcc/powerpc64le-linux-gnu/13/:/usr/libexec/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/13/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/13/:/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'primer_bed.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' 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'-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'interval_tree.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' 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'-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'ref_seq.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mcpu=power9' as -v -I . -I .. -a64 -mpower9 -many -mlittle -o parse_gff.o /tmp/ccRYGtcL.s GNU assembler version 2.41 (powerpc64le-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.41 MAKEFLAGS=w -j4 COMPILER_PATH=/usr/libexec/gcc/powerpc64le-linux-gnu/13/:/usr/libexec/gcc/powerpc64le-linux-gnu/13/:/usr/libexec/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/13/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/13/:/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'parse_gff.' g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -v -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ivar ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/libexec/gcc/powerpc64le-linux-gnu/13/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: powerpc64le-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 13.2.0-4ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=powerpc64le-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --with-libphobos-druntime-only=yes --enable-objc-gc=auto --enable-secureplt --with-cpu=power9 --enable-targets=powerpcle-linux --disable-multilib --enable-multiarch --disable-werror --with-long-double-128 --enable-offload-targets=nvptx-none=/build/gcc-13-76Bzr2/gcc-13-13.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=powerpc64le-linux-gnu --host=powerpc64le-linux-gnu --target=powerpc64le-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=1 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Ubuntu 13.2.0-4ubuntu3) MAKEFLAGS=w -j4 COMPILER_PATH=/usr/libexec/gcc/powerpc64le-linux-gnu/13/:/usr/libexec/gcc/powerpc64le-linux-gnu/13/:/usr/libexec/gcc/powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/13/:/usr/lib/gcc/powerpc64le-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/powerpc64le-linux-gnu/13/:/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../powerpc64le-linux-gnu/:/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../lib/:/lib/powerpc64le-linux-gnu/:/lib/../lib/:/usr/lib/powerpc64le-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'ivar.' /usr/libexec/gcc/powerpc64le-linux-gnu/13/collect2 -plugin /usr/libexec/gcc/powerpc64le-linux-gnu/13/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/powerpc64le-linux-gnu/13/lto-wrapper -plugin-opt=-fresolution=/tmp/ccVz9E2V.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -V -m elf64lppc --hash-style=gnu --as-needed -dynamic-linker /lib64/ld64.so.2 -pie -z now -z relro -o ivar /usr/lib/gcc/powerpc64le-linux-gnu/13/../../../powerpc64le-linux-gnu/Scrt1.o /usr/lib/gcc/powerpc64le-linux-gnu/13/../../../powerpc64le-linux-gnu/crti.o /usr/lib/gcc/powerpc64le-linux-gnu/13/crtbeginS.o -L/usr/lib/gcc/powerpc64le-linux-gnu/13 -L/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../powerpc64le-linux-gnu -L/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/powerpc64le-linux-gnu/13/../../.. -Bsymbolic-functions -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/powerpc64le-linux-gnu/13/crtendS.o /usr/lib/gcc/powerpc64le-linux-gnu/13/../../../powerpc64le-linux-gnu/crtn.o GNU ld (GNU Binutils for Ubuntu) 2.41 Supported emulations: elf64lppc elf32lppc elf32lppclinux elf32lppcsim elf64ppc elf32ppc elf32ppclinux elf32ppcsim COLLECT_GCC_OPTIONS='-g' '-O3' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mcpu=power9' '-dumpdir' 'ivar.' make[3]: Leaving directory '/<>/src' Making all in tests make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' dh_auto_test --no-parallel make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1 make[2]: Entering directory '/<>' Making check in src make[3]: Entering directory '/<>/src' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src' Making check in tests make[3]: Entering directory '/<>/tests' make check_primer_trim check_trim check_quality_trim check_consensus check_allele_depth check_consensus_threshold check_consensus_min_depth check_consensus_seq_id check_primer_bed check_getmasked check_removereads check_variants check_common_variants check_unpaired_trim check_primer_trim_edge_cases check_isize_trim check_interval_tree check_amplicon_search check_consensus_min_insert_threshold make[4]: Entering directory '/<>/tests' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o test_primer_trim.o test_primer_trim.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o ../src/trim_primer_quality.o ../src/trim_primer_quality.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o ../src/primer_bed.o ../src/primer_bed.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o ../src/interval_tree.o ../src/interval_tree.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_primer_trim test_primer_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o test_trim.o test_trim.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_trim test_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o check_quality_trim.o check_quality_trim.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_quality_trim check_quality_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o test_call_consensus_from_plup.o test_call_consensus_from_plup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o ../src/call_consensus_pileup.o ../src/call_consensus_pileup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o ../src/allele_functions.o ../src/allele_functions.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_consensus test_call_consensus_from_plup.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o test_allele_depth.o test_allele_depth.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_allele_depth test_allele_depth.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o test_consensus_threshold.o test_consensus_threshold.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_consensus_threshold test_consensus_threshold.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o test_consensus_min_depth.o test_consensus_min_depth.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_consensus_min_depth test_consensus_min_depth.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o test_consensus_seq_id.o test_consensus_seq_id.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_consensus_seq_id test_consensus_seq_id.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o test_primer_bed.o test_primer_bed.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_primer_bed test_primer_bed.o ../src/primer_bed.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o test_getmasked.o test_getmasked.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o ../src/get_masked_amplicons.o ../src/get_masked_amplicons.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_getmasked test_getmasked.o ../src/get_masked_amplicons.o ../src/primer_bed.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o test_removereads.o test_removereads.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o ../src/remove_reads_from_amplicon.o ../src/remove_reads_from_amplicon.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_removereads test_removereads.o ../src/remove_reads_from_amplicon.o ../src/primer_bed.o ../src/trim_primer_quality.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o test_variants.o test_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o ../src/call_variants.o ../src/call_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o ../src/parse_gff.o ../src/parse_gff.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o ../src/ref_seq.o ../src/ref_seq.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_variants test_variants.o ../src/call_variants.o ../src/allele_functions.o ../src/parse_gff.o ../src/ref_seq.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o test_common_variants.o test_common_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o ../src/get_common_variants.o ../src/get_common_variants.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_common_variants test_common_variants.o ../src/get_common_variants.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o test_unpaired_trim.o test_unpaired_trim.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_unpaired_trim test_unpaired_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o test_primer_trim_edge_cases.o test_primer_trim_edge_cases.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_primer_trim_edge_cases test_primer_trim_edge_cases.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o test_isize_trim.o test_isize_trim.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_isize_trim test_isize_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o test_interval_tree.o test_interval_tree.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_interval_tree test_interval_tree.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o test_amplicon_search.o test_amplicon_search.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_amplicon_search test_amplicon_search.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -c -o test_consensus_min_insert_threshold.o test_consensus_min_insert_threshold.cpp g++ -g -O3 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/ivar-1.4.2+dfsg-2ubuntu1 -g -Wall -Wextra -Werror -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_consensus_min_insert_threshold test_consensus_min_insert_threshold.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread make[4]: Leaving directory '/<>/tests' make check-TESTS make[4]: Entering directory '/<>/tests' make[5]: Entering directory '/<>/tests' PASS: check_primer_trim PASS: check_trim PASS: check_quality_trim PASS: check_consensus PASS: check_allele_depth PASS: check_consensus_threshold PASS: check_consensus_min_depth PASS: check_consensus_seq_id PASS: check_primer_bed PASS: check_getmasked PASS: check_removereads PASS: check_variants PASS: check_common_variants FAIL: check_unpaired_trim PASS: check_primer_trim_edge_cases PASS: check_isize_trim PASS: check_interval_tree PASS: check_amplicon_search PASS: check_consensus_min_insert_threshold ====================================== ivar 1.4.2: tests/test-suite.log ====================================== # TOTAL: 19 # PASS: 18 # SKIP: 0 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 .. contents:: :depth: 2 FAIL: check_unpaired_trim ========================= Found 8 primers in BED file test_72_280_12:1:0_11:0:0_2 Forward Reverse Condensing cigar ... test_92_337_8:0:0_10:0:0_21 Forward Reverse Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 0 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 1 Got 56 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 0 Got 6 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 56 Got 1 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 0 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 1 Got 6 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 0 Got 6 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 3 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 0 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 3 Got 99 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 0 Got 6 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 99 Got 2 Cigar flag didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 6 Got 0 Cigar length didn't match for test_92_337_8:0:0_10:0:0_21 ! Expected 2 Got 65 Condensing cigar ... Cigar length didn't match after condense! Expected 19 Got 75 Cigar length didn't match after condense! Expected 56 Got 6 Cigar length didn't match after condense! Expected 1 Got 3 Cigar length didn't match after condense! Expected 6 Got 99 Cigar length didn't match after condense! Expected 3 Got 2 Cigar length didn't match after condense! Expected 99 Got 65 test_147_337_11:1:0_11:1:0_11 Forward Reverse Condensing cigar ... test_149_298_7:0:0_11:0:0_d Forward Reverse Condensing cigar ... test_184_379_11:1:0_8:1:0_26 Forward Reverse Cigar flag didn't match for test_184_379_11:1:0_8:1:0_26 ! Expected 6 Got 0 Cigar length didn't match for test_184_379_11:1:0_8:1:0_26 ! Expected 2 Got 89 Cigar flag didn't match for test_184_379_11:1:0_8:1:0_26 ! Expected 0 Got 4 Cigar length didn't match for test_184_379_11:1:0_8:1:0_26 ! Expected 89 Got 18 Condensing cigar ... Cigar length didn't match after condense! Expected 71 Got 160 Cigar flag didn't match! Expected  Got 4 Cigar length didn't match after condense! Expected 2 Got 18 FAIL check_unpaired_trim (exit status: 255) ============================================================================ Testsuite summary for ivar 1.4.2 ============================================================================ # TOTAL: 19 # PASS: 18 # SKIP: 0 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 ============================================================================ See tests/test-suite.log Please report to gkarthik@scripps.edu ============================================================================ make[5]: *** [Makefile:931: test-suite.log] Error 1 make[5]: Leaving directory '/<>/tests' make[4]: *** [Makefile:1039: check-TESTS] Error 2 make[4]: Leaving directory '/<>/tests' make[3]: *** [Makefile:1238: check-am] Error 2 make[3]: Leaving directory '/<>/tests' make[2]: *** [Makefile:371: check-recursive] Error 1 make[2]: Leaving directory '/<>' dh_auto_test: error: make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:16: override_dh_auto_test] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:12: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2023-10-04T11:48:21Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 56212 Build-Time: 53 Distribution: mantic-proposed Fail-Stage: build Host Architecture: ppc64el Install-Time: 7 Job: ivar_1.4.2+dfsg-2ubuntu1.dsc Machine Architecture: ppc64el Package: ivar Package-Time: 60 Source-Version: 1.4.2+dfsg-2ubuntu1 Space: 56212 Status: attempted Version: 1.4.2+dfsg-2ubuntu1 -------------------------------------------------------------------------------- Finished at 2023-10-04T11:48:21Z Build needed 00:01:00, 56212k disk space E: Build failure (dpkg-buildpackage died) RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=mantic --arch=ppc64el PACKAGEBUILD-26752091 Scanning for processes to kill in build PACKAGEBUILD-26752091