https://launchpad.net/ubuntu/+source/jellyfish/2.2.10-2/+build/16202997 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-ppc64el-009 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:33:00 UTC 2018 ppc64le Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 24 Dec 23:16:14 ntpdate[1772]: adjust time server 10.211.37.1 offset 0.000555 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=ppc64el PACKAGEBUILD-16202997 /home/buildd/filecache-default/8ecade3ba39252410f2285d8b2f76e6336361d85 Creating target for build PACKAGEBUILD-16202997 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=ppc64el PACKAGEBUILD-16202997 Starting target for build PACKAGEBUILD-16202997 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=ppc64el PACKAGEBUILD-16202997 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-16202997 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=ppc64el PACKAGEBUILD-16202997 Updating target for build PACKAGEBUILD-16202997 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main ppc64el Packages [967 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe ppc64el Packages [8695 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5166 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el Packages [77.0 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [40.6 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe ppc64el Packages [283 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [165 kB] Fetched 16.4 MB in 4s (4556 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt binutils binutils-common binutils-powerpc64le-linux-gnu cpp-8 dash dpkg dpkg-dev e2fslibs e2fsprogs g++-8 gcc-8 gcc-8-base init init-system-helpers libapt-pkg5.0 libasan5 libassuan0 libatomic1 libbinutils libcc1-0 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libgcc-8-dev libgcc1 libgnutls30 libgomp1 libgpg-error0 libitm1 liblsan0 libquadmath0 libsqlite3-0 libss2 libstdc++-8-dev libstdc++6 libtsan0 libubsan1 linux-libc-dev sed 41 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 36.8 MB of archives. After this operation, 178 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main ppc64el dpkg ppc64el 1.19.2ubuntu2 [1138 kB] Get:2 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el dash ppc64el 0.5.10.2-4 [101 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main ppc64el sed ppc64el 4.7-1 [203 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el init-system-helpers all 1.56+nmu1 [38.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libgnutls30 ppc64el 3.6.5-2ubuntu1 [758 kB] Get:6 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libubsan1 ppc64el 8.2.0-13ubuntu1 [133 kB] Get:7 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libtsan0 ppc64el 8.2.0-13ubuntu1 [296 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el gcc-8-base ppc64el 8.2.0-13ubuntu1 [18.6 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libgcc1 ppc64el 1:8.2.0-13ubuntu1 [30.3 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libgomp1 ppc64el 8.2.0-13ubuntu1 [79.9 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libitm1 ppc64el 8.2.0-13ubuntu1 [29.3 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libatomic1 ppc64el 8.2.0-13ubuntu1 [9888 B] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libasan5 ppc64el 8.2.0-13ubuntu1 [388 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el liblsan0 ppc64el 8.2.0-13ubuntu1 [144 kB] Get:15 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libquadmath0 ppc64el 8.2.0-13ubuntu1 [136 kB] Get:16 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el cpp-8 ppc64el 8.2.0-13ubuntu1 [6739 kB] Get:17 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libcc1-0 ppc64el 8.2.0-13ubuntu1 [40.8 kB] Get:18 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el g++-8 ppc64el 8.2.0-13ubuntu1 [7647 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el gcc-8 ppc64el 8.2.0-13ubuntu1 [7501 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libgcc-8-dev ppc64el 8.2.0-13ubuntu1 [1200 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libstdc++-8-dev ppc64el 8.2.0-13ubuntu1 [1592 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libstdc++6 ppc64el 8.2.0-13ubuntu1 [443 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libbinutils ppc64el 2.31.1-11ubuntu1 [521 kB] Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el binutils-common ppc64el 2.31.1-11ubuntu1 [194 kB] Get:25 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el binutils ppc64el 2.31.1-11ubuntu1 [3388 B] Get:26 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.31.1-11ubuntu1 [2049 kB] Get:27 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libapt-pkg5.0 ppc64el 1.8.0~alpha3 [899 kB] Get:28 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el apt ppc64el 1.8.0~alpha3 [1201 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main ppc64el libext2fs2 ppc64el 1.44.5-1 [191 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main ppc64el e2fsprogs ppc64el 1.44.5-1 [554 kB] Get:31 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el init ppc64el 1.56+nmu1 [6080 B] Get:32 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libgpg-error0 ppc64el 1.33-3 [70.4 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main ppc64el libcom-err2 ppc64el 1.44.5-1 [9956 B] Get:34 http://ftpmaster.internal/ubuntu disco/main ppc64el libss2 ppc64el 1.44.5-1 [12.6 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main ppc64el libsqlite3-0 ppc64el 3.26.0-3 [564 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main ppc64el dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main ppc64el libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main ppc64el e2fslibs ppc64el 1.44.5-1 [2704 B] Get:39 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el libassuan0 ppc64el 2.5.2-1 [38.7 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main ppc64el libcomerr2 ppc64el 1.44.5-1 [2700 B] Get:41 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el linux-libc-dev ppc64el 4.19.0-9.10 [1035 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 36.8 MB in 1s (53.6 MB/s) (Reading database ... 12596 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.2ubuntu2_ppc64el.deb ... Unpacking dpkg (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Setting up dpkg (1.19.2ubuntu2) ... (Reading database ... 12596 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-4_ppc64el.deb ... Unpacking dash (0.5.10.2-4) over (0.5.10.2-2) ... Setting up dash (0.5.10.2-4) ... (Reading database ... 12596 files and directories currently installed.) Preparing to unpack .../archives/sed_4.7-1_ppc64el.deb ... Unpacking sed (4.7-1) over (4.5-2) ... Setting up sed (4.7-1) ... (Reading database ... 12596 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.56+nmu1_all.deb ... Unpacking init-system-helpers (1.56+nmu1) over (1.56) ... Setting up init-system-helpers (1.56+nmu1) ... (Reading database ... 12596 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.5-2ubuntu1_ppc64el.deb ... Unpacking libgnutls30:ppc64el (3.6.5-2ubuntu1) over (3.6.4-2ubuntu2) ... Setting up libgnutls30:ppc64el (3.6.5-2ubuntu1) ... (Reading database ... 12596 files and directories currently installed.) Preparing to unpack .../libubsan1_8.2.0-13ubuntu1_ppc64el.deb ... Unpacking libubsan1:ppc64el (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../libtsan0_8.2.0-13ubuntu1_ppc64el.deb ... Unpacking libtsan0:ppc64el (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../gcc-8-base_8.2.0-13ubuntu1_ppc64el.deb ... Unpacking gcc-8-base:ppc64el (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Setting up gcc-8-base:ppc64el (8.2.0-13ubuntu1) ... (Reading database ... 12596 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.2.0-13ubuntu1_ppc64el.deb ... Unpacking libgcc1:ppc64el (1:8.2.0-13ubuntu1) over (1:8.2.0-12ubuntu1) ... Setting up libgcc1:ppc64el (1:8.2.0-13ubuntu1) ... (Reading database ... 12596 files and directories currently installed.) Preparing to unpack .../00-libgomp1_8.2.0-13ubuntu1_ppc64el.deb ... Unpacking libgomp1:ppc64el (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../01-libitm1_8.2.0-13ubuntu1_ppc64el.deb ... Unpacking libitm1:ppc64el (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../02-libatomic1_8.2.0-13ubuntu1_ppc64el.deb ... Unpacking libatomic1:ppc64el (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../03-libasan5_8.2.0-13ubuntu1_ppc64el.deb ... Unpacking libasan5:ppc64el (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../04-liblsan0_8.2.0-13ubuntu1_ppc64el.deb ... Unpacking liblsan0:ppc64el (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../05-libquadmath0_8.2.0-13ubuntu1_ppc64el.deb ... Unpacking libquadmath0:ppc64el (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../06-cpp-8_8.2.0-13ubuntu1_ppc64el.deb ... 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Setting up libasan5:ppc64el (8.2.0-13ubuntu1) ... Setting up libassuan0:ppc64el (2.5.2-1) ... Setting up libitm1:ppc64el (8.2.0-13ubuntu1) ... Setting up libubsan1:ppc64el (8.2.0-13ubuntu1) ... Setting up libbinutils:ppc64el (2.31.1-11ubuntu1) ... Setting up binutils-powerpc64le-linux-gnu (2.31.1-11ubuntu1) ... Setting up libgcc-8-dev:ppc64el (8.2.0-13ubuntu1) ... Setting up binutils (2.31.1-11ubuntu1) ... Setting up libstdc++-8-dev:ppc64el (8.2.0-13ubuntu1) ... Setting up gcc-8 (8.2.0-13ubuntu1) ... Setting up g++-8 (8.2.0-13ubuntu1) ... Setting up dpkg-dev (1.19.2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-16202997 ppc64el disco-proposed -c chroot:build-PACKAGEBUILD-16202997 --arch=ppc64el --dist=disco-proposed --nolog jellyfish_2.2.10-2.dsc Initiating build PACKAGEBUILD-16202997 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:33:00 UTC 2018 ppc64le sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-ppc64el-009.buildd +==============================================================================+ | jellyfish 2.2.10-2 (ppc64el) 24 Dec 2018 23:16 | +==============================================================================+ Package: jellyfish Version: 2.2.10-2 Source Version: 2.2.10-2 Distribution: disco-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/jellyfish-pueeg3/jellyfish-2.2.10' with '<>' I: NOTICE: Log filtering will replace 'build/jellyfish-pueeg3' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16202997/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- jellyfish_2.2.10-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-FqS7ak/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-FqS7ak/apt_archive ./ InRelease Get:2 copy:/<>/resolver-FqS7ak/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-FqS7ak/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-FqS7ak/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-FqS7ak/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (237 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-FqS7ak/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12597 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), d-shlibs, yaggo, pkg-config, bc, time, procps, swig, python3-all-dev, python-all-dev, dh-python, perl, chrpath Filtered Build-Depends: debhelper (>= 11~), d-shlibs, yaggo, pkg-config, bc, time, procps, swig, python3-all-dev, python-all-dev, dh-python, perl, chrpath dpkg-deb: building package 'sbuild-build-depends-jellyfish-dummy' in '/<>/resolver-OTyEcp/apt_archive/sbuild-build-depends-jellyfish-dummy.deb'. Ign:1 copy:/<>/resolver-OTyEcp/apt_archive ./ InRelease Get:2 copy:/<>/resolver-OTyEcp/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-OTyEcp/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-OTyEcp/apt_archive ./ Sources [277 B] Get:5 copy:/<>/resolver-OTyEcp/apt_archive ./ Packages [600 B] Fetched 2996 B in 0s (256 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install jellyfish build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bc bsdmainutils chrpath d-shlibs debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libruby2.5 libsigsegv2 libtool libuchardet0 libxml2 libyaml-0-2 m4 man-db mime-support pkg-config po-debconf python python-all python-all-dev python-dev python-minimal python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-dev python3.7-minimal rake ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5 rubygems-integration swig swig3.0 time yaggo Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.7-venv python3.7-doc ri ruby-dev bundler swig-doc swig-examples swig3.0-examples swig3.0-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl zip fonts-lato libjs-jquery The following NEW packages will be installed: autoconf automake autopoint autotools-dev bc bsdmainutils chrpath d-shlibs debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libruby2.5 libsigsegv2 libtool libuchardet0 libxml2 libyaml-0-2 m4 man-db mime-support pkg-config po-debconf python python-all python-all-dev python-dev python-minimal python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-dev python3.7-minimal rake ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5 rubygems-integration sbuild-build-depends-jellyfish-dummy swig swig3.0 time yaggo 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. 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3.7.1-1ubuntu1 [7128 B] Get:11 http://ftpmaster.internal/ubuntu disco/main ppc64el python3 ppc64el 3.7.1-1ubuntu1 [47.2 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main ppc64el libbsd0 ppc64el 0.9.1-1 [53.6 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main ppc64el bsdmainutils ppc64el 11.1.2ubuntu2 [185 kB] Get:14 http://ftpmaster.internal/ubuntu disco/universe ppc64el libuchardet0 ppc64el 0.0.6-3 [67.7 kB] Get:15 http://ftpmaster.internal/ubuntu disco-proposed/main ppc64el groff-base ppc64el 1.22.4-1 [936 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main ppc64el libpipeline1 ppc64el 1.5.0-2 [27.4 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main ppc64el man-db ppc64el 2.8.4-3 [1057 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main ppc64el libpython2.7-minimal ppc64el 2.7.15-5 [335 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main ppc64el python2.7-minimal ppc64el 2.7.15-5 [1469 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main ppc64el 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libexpat1-dev ppc64el 2.2.6-1 [132 kB] Get:62 http://ftpmaster.internal/ubuntu disco/main ppc64el libpython2.7 ppc64el 2.7.15-5 [1104 kB] Get:63 http://ftpmaster.internal/ubuntu disco/main ppc64el libpython2.7-dev ppc64el 2.7.15-5 [31.9 MB] Get:64 http://ftpmaster.internal/ubuntu disco/main ppc64el libpython2-dev ppc64el 2.7.15-3 [7788 B] Get:65 http://ftpmaster.internal/ubuntu disco/main ppc64el libpython-dev ppc64el 2.7.15-3 [5888 B] Get:66 http://ftpmaster.internal/ubuntu disco/main ppc64el libpython-all-dev ppc64el 2.7.15-3 [1092 B] Get:67 http://ftpmaster.internal/ubuntu disco/main ppc64el libpython3.7 ppc64el 3.7.2~rc1-1 [1587 kB] Get:68 http://ftpmaster.internal/ubuntu disco/main ppc64el libpython3.7-dev ppc64el 3.7.2~rc1-1 [48.8 MB] Get:69 http://ftpmaster.internal/ubuntu disco/main ppc64el libpython3-dev ppc64el 3.7.1-1ubuntu1 [7232 B] Get:70 http://ftpmaster.internal/ubuntu disco/main ppc64el libpython3-all-dev ppc64el 3.7.1-1ubuntu1 [1112 B] Get:71 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ppc64el libruby2.5 ppc64el 2.5.3-3ubuntu1 [3186 kB] Get:82 http://ftpmaster.internal/ubuntu disco/main ppc64el pkg-config ppc64el 0.29.1-0ubuntu2 [44.1 kB] Get:83 http://ftpmaster.internal/ubuntu disco/main ppc64el python-all ppc64el 2.7.15-3 [1072 B] Get:84 http://ftpmaster.internal/ubuntu disco/main ppc64el python2.7-dev ppc64el 2.7.15-5 [281 kB] Get:85 http://ftpmaster.internal/ubuntu disco/main ppc64el python2-dev ppc64el 2.7.15-3 [1244 B] Get:86 http://ftpmaster.internal/ubuntu disco/main ppc64el python-dev ppc64el 2.7.15-3 [1220 B] Get:87 http://ftpmaster.internal/ubuntu disco/main ppc64el python-all-dev ppc64el 2.7.15-3 [1096 B] Get:88 http://ftpmaster.internal/ubuntu disco/main ppc64el python3-all ppc64el 3.7.1-1ubuntu1 [1108 B] Get:89 http://ftpmaster.internal/ubuntu disco/main ppc64el python3.7-dev ppc64el 3.7.2~rc1-1 [512 kB] Get:90 http://ftpmaster.internal/ubuntu disco/main ppc64el python3-dev ppc64el 3.7.1-1ubuntu1 [1308 B] Get:91 http://ftpmaster.internal/ubuntu disco/main ppc64el python3-all-dev ppc64el 3.7.1-1ubuntu1 [1112 B] Get:92 http://ftpmaster.internal/ubuntu disco/universe ppc64el swig3.0 ppc64el 3.0.12-1.2 [1140 kB] Get:93 http://ftpmaster.internal/ubuntu disco/universe ppc64el swig ppc64el 3.0.12-1.2 [6468 B] Get:94 http://ftpmaster.internal/ubuntu disco/universe ppc64el yaggo all 1.5.10-1 [18.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 116 MB in 2s (73.0 MB/s) Selecting previously unselected package libpython3.7-minimal:ppc64el. (Reading database ... 12597 files and directories currently installed.) Preparing to unpack .../libpython3.7-minimal_3.7.2~rc1-1_ppc64el.deb ... Unpacking libpython3.7-minimal:ppc64el (3.7.2~rc1-1) ... Selecting previously unselected package libexpat1:ppc64el. Preparing to unpack .../libexpat1_2.2.6-1_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.2.6-1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.2~rc1-1_ppc64el.deb ... Unpacking python3.7-minimal (3.7.2~rc1-1) ... Setting up libpython3.7-minimal:ppc64el (3.7.2~rc1-1) ... Setting up libexpat1:ppc64el (2.2.6-1) ... Setting up python3.7-minimal (3.7.2~rc1-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 12846 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.1-1ubuntu1_ppc64el.deb ... Unpacking python3-minimal (3.7.1-1ubuntu1) ... Selecting previously unselected package mime-support. 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Setting up libpipeline1:ppc64el (1.5.0-2) ... Setting up m4 (1.4.18-2) ... Setting up libbsd0:ppc64el (0.9.1-1) ... Setting up libxml2:ppc64el (2.9.4+dfsg1-7ubuntu3) ... Setting up libuchardet0:ppc64el (0.0.6-3) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:ppc64el (1:5.34-2) ... Setting up libcroco3:ppc64el (0.6.12-2) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up ruby-did-you-mean (1.2.1-1) ... Setting up libyaml-0-2:ppc64el (0.2.1-1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up rubygems-integration (1.11) ... Setting up libexpat1-dev:ppc64el (2.2.6-1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up bc (1.07.1-2) ... Setting up ruby-minitest (5.11.3-1) ... Setting up libpython2.7-stdlib:ppc64el (2.7.15-5) ... Setting up autopoint (0.19.8.1-9) ... Setting up libmpdec2:ppc64el (2.4.2-2) ... Setting up ruby-power-assert (1.1.1-1) ... Setting up libfile-stripnondeterminism-perl (1.0.0-1) ... Setting up swig (3.0.12-1.2) ... Setting up libpython3.7-stdlib:ppc64el (3.7.2~rc1-1) ... Setting up ruby-test-unit (3.2.8-1) ... Setting up gettext (0.19.8.1-9) ... Setting up groff-base (1.22.4-1) ... Setting up python2.7 (2.7.15-5) ... Setting up python3.7 (3.7.2~rc1-1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libpython3.7:ppc64el (3.7.2~rc1-1) ... Setting up libpython2.7:ppc64el (2.7.15-5) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython3.7-dev:ppc64el (3.7.2~rc1-1) ... Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2-stdlib:ppc64el (2.7.15-3) ... Setting up libpython2.7-dev:ppc64el (2.7.15-5) ... Setting up python2.7-dev (2.7.15-5) ... Setting up libpython3-dev:ppc64el (3.7.1-1ubuntu1) ... Setting up libtool (2.4.6-6) ... Setting up libpython3-stdlib:ppc64el (3.7.1-1ubuntu1) ... Setting up po-debconf (1.0.21) ... Setting up python3 (3.7.1-1ubuntu1) ... Setting up python3.7-dev (3.7.2~rc1-1) ... Setting up python2 (2.7.15-3) ... Setting up libpython2-dev:ppc64el (2.7.15-3) ... Setting up libpython-stdlib:ppc64el (2.7.15-3) ... Setting up libpython3-all-dev:ppc64el (3.7.1-1ubuntu1) ... Setting up python2-dev (2.7.15-3) ... Setting up python3-lib2to3 (3.7.1-1ubuntu4) ... Setting up python3-distutils (3.7.1-1ubuntu4) ... Setting up python (2.7.15-3) ... Setting up libpython-dev:ppc64el (2.7.15-3) ... Setting up python-dev (2.7.15-3) ... Setting up libpython-all-dev:ppc64el (2.7.15-3) ... Setting up dh-python (3.20180927ubuntu2) ... Setting up python-all (2.7.15-3) ... Setting up python3-dev (3.7.1-1ubuntu1) ... Setting up python-all-dev (2.7.15-3) ... Setting up python3-all (3.7.1-1ubuntu1) ... Setting up python3-all-dev (3.7.1-1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up rake (12.3.1-3) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Setting up debhelper (12ubuntu1) ... Setting up libruby2.5:ppc64el (2.5.3-3ubuntu1) ... Setting up ruby2.5 (2.5.3-3ubuntu1) ... Setting up ruby (1:2.5.1) ... Setting up yaggo (1.5.10-1) ... Setting up sbuild-build-depends-jellyfish-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-141-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.31.1-11ubuntu1 dpkg-dev_1.19.2ubuntu2 g++-8_8.2.0-13ubuntu1 gcc-8_8.2.0-13ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-13ubuntu1 libstdc++6_8.2.0-13ubuntu1 linux-libc-dev_4.19.0-9.10 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 bc_1.07.1-2 binutils_2.31.1-11ubuntu1 binutils-common_2.31.1-11ubuntu1 binutils-powerpc64le-linux-gnu_2.31.1-11ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 chrpath_0.16-2 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-13ubuntu1 d-shlibs_0.83 dash_0.5.10.2-4 debconf_1.5.69 debhelper_12ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-python_3.20180927ubuntu2 dh-strip-nondeterminism_1.0.0-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.2ubuntu2 dpkg-dev_1.19.2ubuntu2 dwz_0.12-3 e2fslibs_1.44.5-1 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-13ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-13ubuntu1 gcc-8-base_8.2.0-13ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-3 groff-base_1.22.4-1 gzip_1.6-5ubuntu2 hostname_3.21 init_1.56+nmu1 init-system-helpers_1.56+nmu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.8.0~alpha3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-13ubuntu1 libassuan0_2.5.2-1 libatomic1_8.2.0-13ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-11ubuntu1 libblkid1_2.32-0.1ubuntu2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-13ubuntu1 libcom-err2_1.44.5-1 libcomerr2_1.44.5-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2ubuntu2 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.2ubuntu2 libelf1_0.175-1 libexpat1_2.2.6-1 libexpat1-dev_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.0.0-1 libgcc-8-dev_8.2.0-13ubuntu1 libgcc1_1:8.2.0-13ubuntu1 libgcrypt20_1.8.4-3ubuntu1 libgdbm-compat4_1.18.1-2 libgdbm6_1.18.1-2 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2ubuntu1 libgomp1_8.2.0-13ubuntu1 libgpg-error0_1.33-3 libhogweed4_3.4.1~rc1-1 libicu63_63.1-5 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu3 libisl19_0.20-2 libitm1_8.2.0-13ubuntu1 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu2 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.2.0-13ubuntu1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-2 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4.1~rc1-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libpng16-16_1.6.34-2 libprocps7_2:3.3.15-2ubuntu1 libpython-all-dev_2.7.15-3 libpython-dev_2.7.15-3 libpython-stdlib_2.7.15-3 libpython2-dev_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7_2.7.15-5 libpython2.7-dev_2.7.15-5 libpython2.7-minimal_2.7.15-5 libpython2.7-stdlib_2.7.15-5 libpython3-all-dev_3.7.1-1ubuntu1 libpython3-dev_3.7.1-1ubuntu1 libpython3-stdlib_3.7.1-1ubuntu1 libpython3.7_3.7.2~rc1-1 libpython3.7-dev_3.7.2~rc1-1 libpython3.7-minimal_3.7.2~rc1-1 libpython3.7-stdlib_3.7.2~rc1-1 libquadmath0_8.2.0-13ubuntu1 libreadline7_7.0-5 libruby2.5_2.5.3-3ubuntu1 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-1build2 libsemanage1_2.8-1build2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.26.0-3 libss2_1.44.5-1 libssl1.1_1.1.1a-1ubuntu2 libstdc++-8-dev_8.2.0-13ubuntu1 libstdc++6_8.2.0-13ubuntu1 libsystemd0_239-7ubuntu15 libtasn1-6_4.13-3 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-6 libtsan0_8.2.0-13ubuntu1 libubsan1_8.2.0-13ubuntu1 libuchardet0_0.0.6-3 libudev1_239-7ubuntu15 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1ubuntu2 libxml2_2.9.4+dfsg1-7ubuntu3 libyaml-0-2_0.2.1-1 libzstd1_1.3.5+dfsg-1ubuntu1 linux-libc-dev_4.19.0-9.10 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.4-3 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1a-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1build2 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_143 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 python_2.7.15-3 python-all_2.7.15-3 python-all-dev_2.7.15-3 python-dev_2.7.15-3 python-minimal_2.7.15-3 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-5 python2.7-dev_2.7.15-5 python2.7-minimal_2.7.15-5 python3_3.7.1-1ubuntu1 python3-all_3.7.1-1ubuntu1 python3-all-dev_3.7.1-1ubuntu1 python3-dev_3.7.1-1ubuntu1 python3-distutils_3.7.1-1ubuntu4 python3-lib2to3_3.7.1-1ubuntu4 python3-minimal_3.7.1-1ubuntu1 python3.7_3.7.2~rc1-1 python3.7-dev_3.7.2~rc1-1 python3.7-minimal_3.7.2~rc1-1 rake_12.3.1-3 readline-common_7.0-5 ruby_1:2.5.1 ruby-did-you-mean_1.2.1-1 ruby-minitest_5.11.3-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.1-1 ruby-test-unit_3.2.8-1 ruby-xmlrpc_0.3.0-2 ruby2.5_2.5.3-3ubuntu1 rubygems-integration_1.11 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-jellyfish-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 swig_3.0.12-1.2 swig3.0_3.0.12-1.2 systemd_239-7ubuntu15 systemd-sysv_239-7ubuntu15 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-3 time_1.7-25.1build1 tzdata_2018g-1 ubuntu-keyring_2018.09.18.1 util-linux_2.32-0.1ubuntu2 xz-utils_5.2.2-1.3 yaggo_1.5.10-1 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Dec 24 14:47:04 2018 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./jellyfish_2.2.10-2.dsc dpkg-source: info: extracting jellyfish in jellyfish-2.2.10 dpkg-source: info: unpacking jellyfish_2.2.10.orig.tar.gz dpkg-source: info: unpacking jellyfish_2.2.10-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying manpage_whatis_entry.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying portability.patch dpkg-source: info: applying fix_catch.patch dpkg-source: info: applying fix_replacement_of_-L_option.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16202997 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16202997 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16202997 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package jellyfish dpkg-buildpackage: info: source version 2.2.10-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean # --with python3 debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean if [ -d debian/tmp_save_tests ] ; then \ mv debian/tmp_save_tests/* tests ; \ rmdir debian/tmp_save_tests ; \ fi rm -f tests/compat.sh rm -f swig/python/jellyfish* # swig/python/dna_jellyfish.py make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch # --with python3 dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:8: installing './compile' configure.ac:2: installing './config.guess' configure.ac:2: installing './config.sub' configure.ac:4: installing './install-sh' configure.ac:4: installing './missing' Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-swig --enable-perl-binding # --enable-python-binding ./configure --build=powerpc64le-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/powerpc64le-linux-gnu --libexecdir=\${prefix}/lib/powerpc64le-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-swig --enable-perl-binding configure: WARNING: unrecognized options: --disable-maintainer-mode checking build system type... powerpc64le-unknown-linux-gnu checking host system type... powerpc64le-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert powerpc64le-unknown-linux-gnu file names to powerpc64le-unknown-linux-gnu format... func_convert_file_noop checking how to convert powerpc64le-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for shared library run path origin... done checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for HTSLIB... no checking for samtools... no checking for md5sum... md5sum checking for yaggo... /usr/bin/yaggo checking for x86 cpuid output... unknown checking for x86-AVX xgetbv output... unknown checking whether altivec is supported for old distros... checking whether altivec is supported... yes checking whether C++ compiler accepts -maltivec... yes checking whether vsx is supported... yes checking whether C++ compiler accepts -mvsx... yes checking for __int128... yes checking for std::numeric_limits<__int128>... no checking for _NSGetExecutablePath... no checking for execinfo.h... yes checking for ext/stdio_filebuf.h... yes checking for sys/syscall.h... yes checking for siginfo_t.si_int... yes checking for swig... /usr/bin/swig checking SWIG version... 3.0.12 checking for SWIG library... /usr/share/swig3.0 checking for perl... /usr/bin/perl checking for Perl prefix... /usr checking for Perl extension include path... /usr/lib/powerpc64le-linux-gnu/perl/5.28/CORE checking for Perl extension target directory... /usr/lib/perl/5.28.0 checking for Perl extensions C preprocessor flags... -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include checking for Perl extensions linker flags... -shared -L/usr/local/lib -fstack-protector-strong checking for posix_memalign... yes checking for aligned_alloc... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating tests/compat.sh config.status: creating jellyfish-2.0.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' mkdir -p debian/tmp_save_tests cp -a tests/* debian/tmp_save_tests dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all bin/fastq2sam make -j1 all bin/generate_sequence bin/test_all bin/fastq2sam make[2]: Entering directory '/<>' /usr/bin/yaggo --license ./header-license -o sub_commands/count_main_cmdline.hpp sub_commands/count_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/info_main_cmdline.hpp sub_commands/info_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/dump_main_cmdline.hpp sub_commands/dump_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/histo_main_cmdline.hpp sub_commands/histo_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/stats_main_cmdline.hpp sub_commands/stats_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/merge_main_cmdline.hpp sub_commands/merge_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/bc_main_cmdline.hpp sub_commands/bc_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/query_main_cmdline.hpp sub_commands/query_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/cite_main_cmdline.hpp sub_commands/cite_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/mem_main_cmdline.hpp sub_commands/mem_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o jellyfish/generate_sequence_cmdline.hpp jellyfish/generate_sequence_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o jellyfish/fastq2sam_cmdline.hpp jellyfish/fastq2sam_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o unit_tests/test_main_cmdline.hpp unit_tests/test_main_cmdline.yaggo /usr/bin/swig -c++ -perl5 -I./../include -o swig/perl5/swig_wrap.cpp swig/jellyfish.i make all-am make[3]: Entering directory '/<>' g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/jellyfish.o sub_commands/jellyfish.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/count_main.o sub_commands/count_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/info_main.o sub_commands/info_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/dump_main.o sub_commands/dump_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/histo_main.o sub_commands/histo_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/stats_main.o sub_commands/stats_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/merge_main.o sub_commands/merge_main.cc g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sub_commands/bc_main.o sub_commands/bc_main.cc g++ 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jellyfish/merge_files.o jellyfish/merge_files.cc /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o lib/rectangular_binary_matrix.lo lib/rectangular_binary_matrix.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c lib/rectangular_binary_matrix.cc -fPIC -DPIC -o lib/.libs/rectangular_binary_matrix.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c lib/rectangular_binary_matrix.cc -o lib/rectangular_binary_matrix.o >/dev/null 2>&1 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./.libs/libjellyfish-2.0.so -pthread g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/fastq2sam.o jellyfish/fastq2sam.cc /bin/bash ./libtool --tag=CXX --mode=link g++ -Werror -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lpthread -o bin/fastq2sam jellyfish/fastq2sam.o libjellyfish-2.0.la libtool: link: g++ -Werror -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/fastq2sam jellyfish/fastq2sam.o -lpthread ./.libs/libjellyfish-2.0.so -pthread make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' make check-am make[2]: Entering directory '/<>' make bin/generate_sequence bin/fastq2sam bin/test_all libgtest.la libgtest_main.la make[3]: Entering directory '/<>' make[3]: 'bin/generate_sequence' is up to date. make[3]: 'bin/fastq2sam' is up to date. make[3]: 'bin/test_all' is up to date. make[3]: 'libgtest.la' is up to date. /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/gtest/src/libgtest_main_la-gtest_main.lo `test -f 'unit_tests/gtest/src/gtest_main.cc' || echo './'`unit_tests/gtest/src/gtest_main.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c unit_tests/gtest/src/gtest_main.cc -fPIC -DPIC -o unit_tests/gtest/src/.libs/libgtest_main_la-gtest_main.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c unit_tests/gtest/src/gtest_main.cc -o unit_tests/gtest/src/libgtest_main_la-gtest_main.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link g++ -I./unit_tests -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lpthread -o libgtest_main.la unit_tests/gtest/src/libgtest_main_la-gtest_main.lo libgtest.la libtool: link: (cd .libs/libgtest_main.lax/libgtest.a && ar x "/<>/./.libs/libgtest.a") libtool: link: ar cru .libs/libgtest_main.a unit_tests/gtest/src/.libs/libgtest_main_la-gtest_main.o .libs/libgtest_main.lax/libgtest.a/libgtest_la-gtest-all.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libgtest_main.a libtool: link: rm -fr .libs/libgtest_main.lax libtool: link: ( cd ".libs" && rm -f "libgtest_main.la" && ln -s "../libgtest_main.la" "libgtest_main.la" ) make[3]: Leaving directory '/<>' make check-TESTS make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' SKIP: tests/big.sh PASS: tests/generate_sequence.sh PASS: tests/bloom_filter.sh PASS: tests/subset_hashing.sh PASS: tests/merge.sh PASS: tests/multi_file.sh PASS: tests/bloom_counter.sh SKIP: tests/sam.sh PASS: tests/small_mers.sh SKIP: tests/swig_python.sh SKIP: tests/swig_ruby.sh PASS: tests/parallel_hashing.sh PASS: tests/large_key.sh PASS: tests/swig_perl.sh PASS: unit_tests/unit_tests.sh ============================================================================ Testsuite summary for jellyfish 2.2.10 ============================================================================ # TOTAL: 15 # PASS: 11 # SKIP: 4 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch # --with python3 dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- install-data make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no install-data make[2]: Entering directory '/<>' make install-am make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' /bin/mkdir -p '/<>/debian/tmp/usr/lib/powerpc64le-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libjellyfish-2.0.la '/<>/debian/tmp/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.so.2.0.0 /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libjellyfish-2.0.so.2.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2 || { rm -f libjellyfish-2.0.so.2 && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so || { rm -f libjellyfish-2.0.so && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so; }; }) libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.lai /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libjellyfish-2.0.la libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.a /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libjellyfish-2.0.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libjellyfish-2.0.a libtool: install: ranlib /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libjellyfish-2.0.a libtool: warning: remember to run 'libtool --finish /usr/lib/powerpc64le-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c bin/jellyfish '/<>/debian/tmp/usr/bin' libtool: warning: 'libjellyfish-2.0.la' has not been installed in '/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c bin/.libs/jellyfish /<>/debian/tmp/usr/bin/jellyfish /bin/mkdir -p '/<>/debian/tmp/usr/include/jellyfish-2.2.10/jellyfish' /usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/parser_common.hpp include/jellyfish/sam_format.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp '/<>/debian/tmp/usr/include/jellyfish-2.2.10/jellyfish' /usr/bin/install -c -m 644 include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/<>/debian/tmp/usr/include/jellyfish-2.2.10/jellyfish' /bin/mkdir -p '/<>/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 'doc/jellyfish.man' '/<>/debian/tmp/usr/share/man/man1/jellyfish.1' /bin/mkdir -p '/<>/debian/tmp/usr/lib/perl/5.28.0' /bin/bash ./libtool --mode=install /usr/bin/install -c swig/perl5/jellyfish.la '/<>/debian/tmp/usr/lib/perl/5.28.0' libtool: warning: relinking 'swig/perl5/jellyfish.la' libtool: install: (cd /<>; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -Werror -Wno-error -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.28.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/powerpc64le-linux-gnu/8/../../../powerpc64le-linux-gnu/crti.o /usr/lib/gcc/powerpc64le-linux-gnu/8/crtbeginS.o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o -lpthread -L/<>/debian/tmp/usr/lib/powerpc64le-linux-gnu -L/usr/lib/powerpc64le-linux-gnu -ljellyfish-2.0 -L/usr/lib/gcc/powerpc64le-linux-gnu/8 -L/usr/lib/gcc/powerpc64le-linux-gnu/8/../../../powerpc64le-linux-gnu -L/usr/lib/gcc/powerpc64le-linux-gnu/8/../../../../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/powerpc64le-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/powerpc64le-linux-gnu/8/crtendS.o /usr/lib/gcc/powerpc64le-linux-gnu/8/../../../powerpc64le-linux-gnu/crtn.o -g -O3 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0 libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /<>/debian/tmp/usr/lib/perl/5.28.0/jellyfish.so.0.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/perl/5.28.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/perl/5.28.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so || { rm -f jellyfish.so && ln -s jellyfish.so.0.0.0 jellyfish.so; }; }) libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.lai /<>/debian/tmp/usr/lib/perl/5.28.0/jellyfish.la libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.a /<>/debian/tmp/usr/lib/perl/5.28.0/jellyfish.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/perl/5.28.0/jellyfish.a libtool: install: ranlib /<>/debian/tmp/usr/lib/perl/5.28.0/jellyfish.a libtool: warning: remember to run 'libtool --finish /usr/lib/perl/5.28.0' /bin/mkdir -p '/<>/debian/tmp/usr/lib/perl/5.28.0' /usr/bin/install -c swig/perl5/jellyfish.pm '/<>/debian/tmp/usr/lib/perl/5.28.0' /bin/mkdir -p '/<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 jellyfish-2.0.pc '/<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/pkgconfig' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' /bin/mkdir -p '/<>/debian/tmp/usr/include/jellyfish-2.2.10/jellyfish' /usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/parser_common.hpp include/jellyfish/sam_format.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp '/<>/debian/tmp/usr/include/jellyfish-2.2.10/jellyfish' /usr/bin/install -c -m 644 include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/<>/debian/tmp/usr/include/jellyfish-2.2.10/jellyfish' /bin/mkdir -p '/<>/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 'doc/jellyfish.man' '/<>/debian/tmp/usr/share/man/man1/jellyfish.1' /bin/mkdir -p '/<>/debian/tmp/usr/lib/perl/5.28.0' /bin/bash ./libtool --mode=install /usr/bin/install -c swig/perl5/jellyfish.la '/<>/debian/tmp/usr/lib/perl/5.28.0' libtool: warning: relinking 'swig/perl5/jellyfish.la' libtool: install: (cd /<>; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -Werror -Wno-error -std=c++11 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lpthread -o swig/perl5/jellyfish.la -rpath /usr/lib/perl/5.28.0 swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo libjellyfish-2.0.la -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/powerpc64le-linux-gnu/8/../../../powerpc64le-linux-gnu/crti.o /usr/lib/gcc/powerpc64le-linux-gnu/8/crtbeginS.o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o -lpthread -L/<>/debian/tmp/usr/lib/powerpc64le-linux-gnu -L/usr/lib/powerpc64le-linux-gnu -ljellyfish-2.0 -L/usr/lib/gcc/powerpc64le-linux-gnu/8 -L/usr/lib/gcc/powerpc64le-linux-gnu/8/../../../powerpc64le-linux-gnu -L/usr/lib/gcc/powerpc64le-linux-gnu/8/../../../../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/powerpc64le-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/powerpc64le-linux-gnu/8/crtendS.o /usr/lib/gcc/powerpc64le-linux-gnu/8/../../../powerpc64le-linux-gnu/crtn.o -g -O3 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,jellyfish.so.0 -o swig/perl5/.libs/jellyfish.so.0.0.0 libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.so.0.0.0T /<>/debian/tmp/usr/lib/perl/5.28.0/jellyfish.so.0.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/perl/5.28.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so.0 || { rm -f jellyfish.so.0 && ln -s jellyfish.so.0.0.0 jellyfish.so.0; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/perl/5.28.0 && { ln -s -f jellyfish.so.0.0.0 jellyfish.so || { rm -f jellyfish.so && ln -s jellyfish.so.0.0.0 jellyfish.so; }; }) libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.lai /<>/debian/tmp/usr/lib/perl/5.28.0/jellyfish.la libtool: install: /usr/bin/install -c swig/perl5/.libs/jellyfish.a /<>/debian/tmp/usr/lib/perl/5.28.0/jellyfish.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/perl/5.28.0/jellyfish.a libtool: install: ranlib /<>/debian/tmp/usr/lib/perl/5.28.0/jellyfish.a libtool: warning: remember to run 'libtool --finish /usr/lib/perl/5.28.0' /bin/mkdir -p '/<>/debian/tmp/usr/lib/perl/5.28.0' /usr/bin/install -c swig/perl5/jellyfish.pm '/<>/debian/tmp/usr/lib/perl/5.28.0' /bin/mkdir -p '/<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 jellyfish-2.0.pc '/<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/pkgconfig' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' # dh_install -X*.a -X*.la -Xpkgconfig dh_auto_configure --sourcedirectory=swig/perl5 cd swig/perl5 && perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=powerpc64le-linux-gnu-gcc -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lpthread" -I/<>/debian/tmp//usr/include/jellyfish-2.2.10 -L/<>/debian/tmp//usr/lib/powerpc64le-linux-gnu -ljellyfish-2.0 -lpthread -L/<>/debian/tmp//usr/lib/powerpc64le-linux-gnu Generating a Unix-style Makefile Writing Makefile for jellyfish Writing MYMETA.yml and MYMETA.json dh_auto_build --sourcedirectory=swig/perl5 cd swig/perl5 && make -j4 make[2]: Entering directory '/<>/swig/perl5' Running Mkbootstrap for jellyfish () g++ -c -std=c++0x -I/<>/debian/tmp//usr/include/jellyfish-2.2.10 -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.0.1\" -DXS_VERSION=\"0.0.1\" -fPIC "-I/usr/lib/powerpc64le-linux-gnu/perl/5.28/CORE" swig_wrap.cpp chmod 644 "jellyfish.bs" "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- jellyfish.bs blib/arch/auto/jellyfish/jellyfish.bs 644 cp jellyfish.pm blib/lib/jellyfish.pm rm -f blib/arch/auto/jellyfish/jellyfish.so LD_RUN_PATH="/<>/debian/tmp//usr/lib/powerpc64le-linux-gnu" powerpc64le-linux-gnu-gcc -g -O3 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lpthread -shared -L/usr/local/lib -fstack-protector-strong swig_wrap.o -o blib/arch/auto/jellyfish/jellyfish.so \ -L/<>/debian/tmp//usr/lib/powerpc64le-linux-gnu -ljellyfish-2.0 -lpthread \ chmod 755 blib/arch/auto/jellyfish/jellyfish.so make[2]: Leaving directory '/<>/swig/perl5' dh_auto_install --sourcedirectory=swig/perl5 cd swig/perl5 && make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[2]: Entering directory '/<>/swig/perl5' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- jellyfish.bs blib/arch/auto/jellyfish/jellyfish.bs 644 Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/perl5/5.28/auto/jellyfish/jellyfish.so Installing /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/perl5/5.28/jellyfish.pm make[2]: Leaving directory '/<>/swig/perl5' chrpath --delete debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "debian/tmp/usr/include/jellyfish*/jellyfish/*.hpp" usr/include/jellyfish \ --movedev "debian/tmp/usr/include/jellyfish*/jellyfish/*.h" usr/include/jellyfish \ debian/tmp/usr/lib/*/libjellyfish-*.so Library package automatic movement utility set -e install -d -m 755 debian/libjellyfish-2.0-dev/usr/lib/powerpc64le-linux-gnu install -d -m 755 debian/libjellyfish-2.0-2/usr/lib/powerpc64le-linux-gnu mv debian/tmp/usr/lib/powerpc64le-linux-gnu/libjellyfish-2.0.a debian/libjellyfish-2.0-dev/usr/lib/powerpc64le-linux-gnu mv debian/tmp/usr/lib/powerpc64le-linux-gnu/libjellyfish-2.0.la debian/libjellyfish-2.0-dev/usr/lib/powerpc64le-linux-gnu || true mv debian/tmp/usr/lib/powerpc64le-linux-gnu/libjellyfish-2.0.so debian/libjellyfish-2.0-dev/usr/lib/powerpc64le-linux-gnu mv /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libjellyfish-2.0.so.2 debian/libjellyfish-2.0-2/usr/lib/powerpc64le-linux-gnu mv /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libjellyfish-2.0.so.2.0.0 debian/libjellyfish-2.0-2/usr/lib/powerpc64le-linux-gnu PKGDEV=libjellyfish-2.0-dev PKGSHL=libjellyfish-2.0-2 install -d -m 755 debian/libjellyfish-2.0-dev/usr/include/jellyfish mv debian/tmp/usr/include/jellyfish*/jellyfish/*.hpp debian/libjellyfish-2.0-dev/usr/include/jellyfish install -d -m 755 debian/libjellyfish-2.0-dev/usr/include/jellyfish mv debian/tmp/usr/include/jellyfish*/jellyfish/*.h debian/libjellyfish-2.0-dev/usr/include/jellyfish sed -i "/dependency_libs/ s/'.*'/''/" ./debian/libjellyfish-2.0-dev/usr/lib/powerpc64le-linux-gnu/*.la make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples sed '/SRCDIR=/d' debian/jellyfish-examples/usr/share/doc/jellyfish-examples/examples/compat.sh* if [ -z "$nCPUs" ]; then nCPUs=$(grep -c '^processor' /proc/cpuinfo 2>/dev/null || sysctl -n hw.ncpu) fi pref=$(basename $0 .sh) DIR=../bin JF="$DIR/jellyfish" [ -n "$VALGRIND" ] && JF="valgrind $JF" BUILDDIR=/<> check () { cut -d\ -f 2 $1 | xargs md5sum | sed 's/ \*/ /' | sort -k2,2 | diff -w $DIFFFLAGS $1 - } ENABLE_RUBY_BINDING="" RUBY="" ENABLE_PYTHON_BINDING="" PYTHON="" ENABLE_PERL_BINDING="/usr/lib/perl/5.28.0" PERL="/usr/bin/perl" SAMTOOLS="" if [ -n "$DEBUG" ]; then set -x; DIFFFLAGS="-y" fi set -e if [ -z "$nCPUs" ]; then nCPUs=$(grep -c '^processor' /proc/cpuinfo 2>/dev/null || sysctl -n hw.ncpu) fi pref=$(basename $0 .sh) DIR=../bin JF="$DIR/jellyfish" [ -n "$VALGRIND" ] && JF="valgrind $JF" BUILDDIR=@abs_top_builddir@ check () { cut -d\ -f 2 $1 | xargs @MD5@ | sed 's/ \*/ /' | sort -k2,2 | diff -w $DIFFFLAGS $1 - } ENABLE_RUBY_BINDING="@RUBY_EXT_LIB@" RUBY="@RUBY@" ENABLE_PYTHON_BINDING="@PYTHON@" PYTHON="@PYTHON@" ENABLE_PERL_BINDING="@PERL_EXT_LIB@" PERL="@PERL@" SAMTOOLS="@SAMTOOLS@" if [ -n "$DEBUG" ]; then set -x; DIFFFLAGS="-y" fi set -e sed '/BUILDDIR=/d' debian/jellyfish-examples/usr/share/doc/jellyfish-examples/examples/compat.sh* if [ -z "$nCPUs" ]; then nCPUs=$(grep -c '^processor' /proc/cpuinfo 2>/dev/null || sysctl -n hw.ncpu) fi pref=$(basename $0 .sh) DIR=../bin JF="$DIR/jellyfish" [ -n "$VALGRIND" ] && JF="valgrind $JF" SRCDIR=/<> check () { cut -d\ -f 2 $1 | xargs md5sum | sed 's/ \*/ /' | sort -k2,2 | diff -w $DIFFFLAGS $1 - } ENABLE_RUBY_BINDING="" RUBY="" ENABLE_PYTHON_BINDING="" PYTHON="" ENABLE_PERL_BINDING="/usr/lib/perl/5.28.0" PERL="/usr/bin/perl" SAMTOOLS="" if [ -n "$DEBUG" ]; then set -x; DIFFFLAGS="-y" fi set -e if [ -z "$nCPUs" ]; then nCPUs=$(grep -c '^processor' /proc/cpuinfo 2>/dev/null || sysctl -n hw.ncpu) fi pref=$(basename $0 .sh) DIR=../bin JF="$DIR/jellyfish" [ -n "$VALGRIND" ] && JF="valgrind $JF" SRCDIR=@abs_top_srcdir@ check () { cut -d\ -f 2 $1 | xargs @MD5@ | sed 's/ \*/ /' | sort -k2,2 | diff -w $DIFFFLAGS $1 - } ENABLE_RUBY_BINDING="@RUBY_EXT_LIB@" RUBY="@RUBY@" ENABLE_PYTHON_BINDING="@PYTHON@" PYTHON="@PYTHON@" ENABLE_PERL_BINDING="@PERL_EXT_LIB@" PERL="@PERL@" SAMTOOLS="@SAMTOOLS@" if [ -n "$DEBUG" ]; then set -x; DIFFFLAGS="-y" fi set -e rm -f debian/jellyfish-examples/usr/share/doc/jellyfish-examples/examples/swig* make[1]: Leaving directory '/<>' dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing jellyfish (in debian/jellyfish); do_strip: , oemstrip: pkgstriptranslations: processing libjellyfish-perl-dbgsym (in debian/.debhelper/libjellyfish-perl/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing libjellyfish-2.0-2-dbgsym (in debian/.debhelper/libjellyfish-2.0-2/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/jellyfish/DEBIAN/control, package jellyfish, directory debian/jellyfish Searching for duplicated docs in dependency libjellyfish-2.0-2... symlinking changelog.Debian.gz in jellyfish to file in libjellyfish-2.0-2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package jellyfish ... pkgstripfiles: processing control file: debian/.debhelper/libjellyfish-perl/dbgsym-root/DEBIAN/control, package libjellyfish-perl-dbgsym, directory debian/.debhelper/libjellyfish-perl/dbgsym-root pkgstripfiles: No PNG files. dpkg-deb: building package 'libjellyfish-perl-dbgsym' in 'debian/.debhelper/scratch-space/build-libjellyfish-perl/libjellyfish-perl-dbgsym_2.2.10-2_ppc64el.deb'. dpkg-deb: building package 'jellyfish' in '../jellyfish_2.2.10-2_ppc64el.deb'. pkgstripfiles: processing control file: debian/.debhelper/libjellyfish-2.0-2/dbgsym-root/DEBIAN/control, package libjellyfish-2.0-2-dbgsym, directory debian/.debhelper/libjellyfish-2.0-2/dbgsym-root dpkg-deb: building package 'libjellyfish-2.0-2-dbgsym' in 'debian/.debhelper/scratch-space/build-libjellyfish-2.0-2/libjellyfish-2.0-2-dbgsym_2.2.10-2_ppc64el.deb'. Renaming libjellyfish-perl-dbgsym_2.2.10-2_ppc64el.deb to libjellyfish-perl-dbgsym_2.2.10-2_ppc64el.ddeb Renaming libjellyfish-2.0-2-dbgsym_2.2.10-2_ppc64el.deb to libjellyfish-2.0-2-dbgsym_2.2.10-2_ppc64el.ddeb INFO: pkgstriptranslations version 143 pkgstriptranslations: processing jellyfish-examples (in debian/jellyfish-examples); do_strip: , oemstrip: INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing libjellyfish-2.0-dev (in debian/libjellyfish-2.0-dev); do_strip: , oemstrip: pkgstriptranslations: processing jellyfish-dbgsym (in debian/.debhelper/jellyfish/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/jellyfish-examples/DEBIAN/control, package jellyfish-examples, directory debian/jellyfish-examples INFO: pkgstripfiles: waiting for lock (jellyfish-examples) ... pkgstripfiles: processing control file: debian/libjellyfish-2.0-dev/DEBIAN/control, package libjellyfish-2.0-dev, directory debian/libjellyfish-2.0-dev INFO: pkgstripfiles: waiting for lock (libjellyfish-2.0-dev) ... pkgstripfiles: processing control file: debian/.debhelper/jellyfish/dbgsym-root/DEBIAN/control, package jellyfish-dbgsym, directory debian/.debhelper/jellyfish/dbgsym-root dpkg-deb: building package 'jellyfish-dbgsym' in 'debian/.debhelper/scratch-space/build-jellyfish/jellyfish-dbgsym_2.2.10-2_ppc64el.deb'. Renaming jellyfish-dbgsym_2.2.10-2_ppc64el.deb to jellyfish-dbgsym_2.2.10-2_ppc64el.ddeb INFO: pkgstriptranslations version 143 pkgstriptranslations: processing libjellyfish-2.0-2 (in debian/libjellyfish-2.0-2); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (jellyfish-examples) ... INFO: pkgstripfiles: waiting for lock (libjellyfish-2.0-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libjellyfish-2.0-2/DEBIAN/control, package libjellyfish-2.0-2, directory debian/libjellyfish-2.0-2 pkgstripfiles: Truncating usr/share/doc/libjellyfish-2.0-2/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libjellyfish-2.0-2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libjellyfish-2.0-2' in '../libjellyfish-2.0-2_2.2.10-2_ppc64el.deb'. INFO: pkgstripfiles: waiting for lock (jellyfish-examples) ... Searching for duplicated docs in dependency libjellyfish-2.0-2... symlinking changelog.Debian.gz in libjellyfish-2.0-dev to file in libjellyfish-2.0-2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libjellyfish-2.0-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libjellyfish-2.0-dev' in '../libjellyfish-2.0-dev_2.2.10-2_ppc64el.deb'. INFO: pkgstriptranslations version 143 pkgstriptranslations: processing libjellyfish-perl (in debian/libjellyfish-perl); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (jellyfish-examples) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libjellyfish-perl/DEBIAN/control, package libjellyfish-perl, directory debian/libjellyfish-perl Searching for duplicated docs in dependency libjellyfish-2.0-2... symlinking changelog.Debian.gz in libjellyfish-perl to file in libjellyfish-2.0-2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libjellyfish-perl ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libjellyfish-perl' in '../libjellyfish-perl_2.2.10-2_ppc64el.deb'. Searching for duplicated docs in dependency jellyfish... symlinking changelog.Debian.gz in jellyfish-examples to file in libjellyfish-2.0-2 Searching for duplicated docs in dependency libjellyfish-2.0-2... pkgstripfiles: Running PNG optimization (using 4 cpus) for package jellyfish-examples ... pkgstripfiles: No PNG files. dpkg-deb: building package 'jellyfish-examples' in '../jellyfish-examples_2.2.10-2_ppc64el.deb'. INFO: pkgstriptranslations version 143 pkgstriptranslations: processing jellyfish-examples-dbgsym (in debian/.debhelper/jellyfish-examples/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/jellyfish-examples/dbgsym-root/DEBIAN/control, package jellyfish-examples-dbgsym, directory debian/.debhelper/jellyfish-examples/dbgsym-root dpkg-deb: building package 'jellyfish-examples-dbgsym' in 'debian/.debhelper/scratch-space/build-jellyfish-examples/jellyfish-examples-dbgsym_2.2.10-2_ppc64el.deb'. Renaming jellyfish-examples-dbgsym_2.2.10-2_ppc64el.deb to jellyfish-examples-dbgsym_2.2.10-2_ppc64el.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../jellyfish_2.2.10-2_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20181224-2323 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ jellyfish_2.2.10-2_ppc64el.changes: ----------------------------------- Format: 1.8 Date: Mon, 24 Dec 2018 06:46:27 -0800 Source: jellyfish Binary: jellyfish libjellyfish-2.0-2 libjellyfish-2.0-dev libjellyfish-perl jellyfish-examples Architecture: ppc64el Version: 2.2.10-2 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Michael R. Crusoe Description: jellyfish - count k-mers in DNA sequences jellyfish-examples - count k-mers in DNA sequences (examples for testing) libjellyfish-2.0-2 - count k-mers in DNA sequences (dynamic library of jellyfish) libjellyfish-2.0-dev - count k-mers in DNA sequences (development files of jellyfish) libjellyfish-perl - count k-mers in DNA sequences (Perl bindings of jellyfish) Changes: jellyfish (2.2.10-2) unstable; urgency=medium . * debian/control: removed unused valgrind dependency * Standards-Version: 4.3.0 * Improve reproducibilty, drop /usr/share/doc/jellyfish- examples/examples/swig* * Remove dependency_libs field in libjellyfish-2.0.la. Checksums-Sha1: d1e950a7fba703687d54d0a7584efab16b47c7db 1741372 jellyfish-dbgsym_2.2.10-2_ppc64el.ddeb af3cfe2d7bbfba87b80eeacefd834740b883c32f 7437164 jellyfish-examples-dbgsym_2.2.10-2_ppc64el.ddeb 4e26676aa336942d10e9a42e9a2f52c431d75389 512212 jellyfish-examples_2.2.10-2_ppc64el.deb 397a07399bdfea7d0240eb4cd3ac7910d0ab6443 9626 jellyfish_2.2.10-2_ppc64el.buildinfo bd7ee5ef80cc6630a6f7551ab9ec5cd34e9f5e49 363448 jellyfish_2.2.10-2_ppc64el.deb d286d35ccb669ca06e49e5d2209bd9c0bebe17b5 607948 libjellyfish-2.0-2-dbgsym_2.2.10-2_ppc64el.ddeb 204d507e0eca212b70f5f178ec783fead372dea4 70256 libjellyfish-2.0-2_2.2.10-2_ppc64el.deb ebda7cf04de2e71f61331cf751c417a5bf3c3b77 142916 libjellyfish-2.0-dev_2.2.10-2_ppc64el.deb 9336db3d9a7f2e6aaabbc3da9c357b045c4c9fb1 379048 libjellyfish-perl-dbgsym_2.2.10-2_ppc64el.ddeb 195dd2e516058d223bc1d9d670bdaec423394bb4 56604 libjellyfish-perl_2.2.10-2_ppc64el.deb Checksums-Sha256: 03e62832f836b10499226ffe5e6a4cd75d2e831c67d04d30be11f4d8433cba9b 1741372 jellyfish-dbgsym_2.2.10-2_ppc64el.ddeb 26431b8708779a7f2cd662974c57d246f5537f79524ec65db6a85f115c426639 7437164 jellyfish-examples-dbgsym_2.2.10-2_ppc64el.ddeb 78cc67cde301960f83132cc82e77f3b7fc0484e98748137c3e043fd38d0c8f18 512212 jellyfish-examples_2.2.10-2_ppc64el.deb 053f92ff77a5e1ff84030c6989180ad27b1972e8390df0e4dc0fad9e492964bd 9626 jellyfish_2.2.10-2_ppc64el.buildinfo 441f2bcd0d384f356a49c49defe619261298173b72b200cb8e05fdc1109daa75 363448 jellyfish_2.2.10-2_ppc64el.deb 2702a55dc1dfa28f7e6ca09a6381be946cade7d903225145d6dc65b348c32302 607948 libjellyfish-2.0-2-dbgsym_2.2.10-2_ppc64el.ddeb ccc72d00b70d8b620b6ea0a6215b5d8c29a3462c810453e70d44269aac713e02 70256 libjellyfish-2.0-2_2.2.10-2_ppc64el.deb dfb9a241787bd0d01e3448b45a7aa98fd5fac59c4360bf5911ec9519ba140c71 142916 libjellyfish-2.0-dev_2.2.10-2_ppc64el.deb 3d82e8c5c09b24efd5b09eb769f02aabbced6f0b1e4a3e835fc49bf90446bb14 379048 libjellyfish-perl-dbgsym_2.2.10-2_ppc64el.ddeb df1593fb055e416b625cb96b46841c3bdd4b578f2633d0b2eae4e108321431d1 56604 libjellyfish-perl_2.2.10-2_ppc64el.deb Files: a220075e2816596641231c38f54f2147 1741372 debug optional jellyfish-dbgsym_2.2.10-2_ppc64el.ddeb ae50f67a6d5da1817621c5c5ccb6d426 7437164 debug optional jellyfish-examples-dbgsym_2.2.10-2_ppc64el.ddeb feb7536231219733cb5c7d1e65cbbb2b 512212 science optional jellyfish-examples_2.2.10-2_ppc64el.deb c6b527bd97d94601c49c4b5e25c894d3 9626 science optional jellyfish_2.2.10-2_ppc64el.buildinfo b7c74e9d247baa1bf5c9a97db041bb13 363448 science optional jellyfish_2.2.10-2_ppc64el.deb b5f5cc36cc6e714326737c32747172d6 607948 debug optional libjellyfish-2.0-2-dbgsym_2.2.10-2_ppc64el.ddeb b171e9e760fcfd1e8284843e72b6e90b 70256 libs optional libjellyfish-2.0-2_2.2.10-2_ppc64el.deb 2c618fd7f28927a6621235fe47669571 142916 libdevel optional libjellyfish-2.0-dev_2.2.10-2_ppc64el.deb a7e1646e6e0ab43f79af31145ec4e3d3 379048 debug optional libjellyfish-perl-dbgsym_2.2.10-2_ppc64el.ddeb 38f7b56a68da73446bbc0477d9608ae3 56604 perl optional libjellyfish-perl_2.2.10-2_ppc64el.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ jellyfish-examples_2.2.10-2_ppc64el.deb --------------------------------------- new debian package, version 2.0. size 512212 bytes: control archive=1936 bytes. 1316 bytes, 27 lines control 3072 bytes, 34 lines md5sums Package: jellyfish-examples Source: jellyfish Version: 2.2.10-2 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2502 Depends: jellyfish, libc6 (>= 2.17), libgcc1 (>= 1:3.0), libjellyfish-2.0-2, libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: http://www.cbcb.umd.edu/software/jellyfish/ Description: count k-mers in DNA sequences (examples for testing) JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. . JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command. . This package contains examples to test the package drwxr-xr-x root/root 0 2018-12-24 14:46 ./ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/lib/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/lib/jellyfish/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/lib/jellyfish/bin/ -rwxr-xr-x root/root 67816 2018-12-24 14:46 ./usr/lib/jellyfish/bin/fastq2sam -rwxr-xr-x root/root 68112 2018-12-24 14:46 ./usr/lib/jellyfish/bin/generate_sequence lrwxrwxrwx root/root 0 2018-12-24 14:46 ./usr/lib/jellyfish/bin/jellyfish -> ../../../bin/jellyfish -rwxr-xr-x root/root 2361816 2018-12-24 14:46 ./usr/lib/jellyfish/bin/test_all drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/doc/jellyfish-examples/ lrwxrwxrwx root/root 0 2018-12-24 14:46 ./usr/share/doc/jellyfish-examples/changelog.Debian.gz -> ../libjellyfish-2.0-2/changelog.Debian.gz -rw-r--r-- root/root 6282 2018-03-12 12:22 ./usr/share/doc/jellyfish-examples/copyright drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/doc/jellyfish-examples/examples/ -rw-r--r-- root/root 782 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/big.sh -rw-r--r-- root/root 1508 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/bloom_counter.sh -rw-r--r-- root/root 904 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/bloom_filter.sh -rw-r--r-- root/root 619 2018-12-24 14:46 ./usr/share/doc/jellyfish-examples/examples/compat.sh -rw-r--r-- root/root 605 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/compat.sh.in -rw-r--r-- root/root 728 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/from_stream.sh -rw-r--r-- root/root 540 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/from_stream_fastq.sh -rw-r--r-- root/root 200 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/generate_fastq_sequence.sh -rwxr-xr-x root/root 521 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/generate_sequence.sh -rw-r--r-- root/root 810 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/large_key.sh -rw-r--r-- root/root 1186 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/merge.sh -rw-r--r-- root/root 427 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/min_qual.sh -rw-r--r-- root/root 1259 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/multi_file.sh -rw-r--r-- root/root 517 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/multi_file_fastq.sh -rwxr-xr-x root/root 864 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/parallel_direct_indexing.sh -rw-r--r-- root/root 771 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/parallel_fastq_direct_indexing.sh -rw-r--r-- root/root 602 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/parallel_fastq_hashing.sh -rw-r--r-- root/root 514 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/parallel_fastq_sequence_hashing.sh -rwxr-xr-x root/root 3492 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/parallel_hashing.sh -rw-r--r-- root/root 282 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/parsers.sh -rw-r--r-- root/root 854 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/quality_filter.sh -rw-r--r-- root/root 836 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/raw_hash.sh -rw-r--r-- root/root 1215 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/sam.sh -rwxr-xr-x root/root 400 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/serial_direct_indexing.sh -rwxr-xr-x root/root 514 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/serial_hashing.sh -rwxr-xr-x root/root 513 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/small.sh -rw-r--r-- root/root 195 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/small_mers.sh -rw-r--r-- root/root 669 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/subset_hashing.sh -rw-r--r-- root/root 131 2018-04-16 12:46 ./usr/share/doc/jellyfish-examples/examples/unit_tests.sh drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 91 2018-03-12 12:20 ./usr/share/lintian/overrides/jellyfish-examples jellyfish_2.2.10-2_ppc64el.deb ------------------------------ new debian package, version 2.0. size 363448 bytes: control archive=1172 bytes. 1212 bytes, 24 lines control 468 bytes, 7 lines md5sums Package: jellyfish Version: 2.2.10-2 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 703 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libjellyfish-2.0-2 (= 2.2.10-2), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: http://www.cbcb.umd.edu/software/jellyfish/ Description: count k-mers in DNA sequences JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. . JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command. drwxr-xr-x root/root 0 2018-12-24 14:46 ./ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/bin/ -rwxr-xr-x root/root 465936 2018-12-24 14:46 ./usr/bin/jellyfish drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/doc-base/ -rw-r--r-- root/root 987 2018-03-12 12:20 ./usr/share/doc-base/jellyfish drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/doc/jellyfish/ -rw-r--r-- root/root 321 2018-03-12 12:20 ./usr/share/doc/jellyfish/README.test lrwxrwxrwx root/root 0 2018-12-24 14:46 ./usr/share/doc/jellyfish/changelog.Debian.gz -> ../libjellyfish-2.0-2/changelog.Debian.gz -rw-r--r-- root/root 6282 2018-03-12 12:22 ./usr/share/doc/jellyfish/copyright -rw-r--r-- root/root 221453 2018-04-16 12:46 ./usr/share/doc/jellyfish/jellyfish.pdf.gz -rw-r--r-- root/root 1354 2018-03-12 12:20 ./usr/share/doc/jellyfish/run-unit-test drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/man/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/man/man1/ -rw-r--r-- root/root 4554 2018-12-24 14:46 ./usr/share/man/man1/jellyfish.1.gz libjellyfish-2.0-2_2.2.10-2_ppc64el.deb --------------------------------------- new debian package, version 2.0. size 70256 bytes: control archive=1276 bytes. 1345 bytes, 29 lines control 335 bytes, 4 lines md5sums 38 bytes, 1 lines shlibs 70 bytes, 2 lines triggers Package: libjellyfish-2.0-2 Source: jellyfish Version: 2.2.10-2 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 284 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2) Section: libs Priority: optional Multi-Arch: same Homepage: http://www.cbcb.umd.edu/software/jellyfish/ Description: count k-mers in DNA sequences (dynamic library of jellyfish) JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. . JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command. . This package contains the dynamic library the main executable of jellyfish is linked to. drwxr-xr-x root/root 0 2018-12-24 14:46 ./ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/lib/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/lib/powerpc64le-linux-gnu/ lrwxrwxrwx root/root 0 2018-12-24 14:46 ./usr/lib/powerpc64le-linux-gnu/libjellyfish-2.0.so.2 -> libjellyfish-2.0.so.2.0.0 -rw-r--r-- root/root 264240 2018-12-24 14:46 ./usr/lib/powerpc64le-linux-gnu/libjellyfish-2.0.so.2.0.0 drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/doc/libjellyfish-2.0-2/ -rw-r--r-- root/root 1179 2018-12-24 14:46 ./usr/share/doc/libjellyfish-2.0-2/changelog.Debian.gz -rw-r--r-- root/root 6282 2018-03-12 12:22 ./usr/share/doc/libjellyfish-2.0-2/copyright drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 230 2018-03-12 12:20 ./usr/share/lintian/overrides/libjellyfish-2.0-2 libjellyfish-2.0-dev_2.2.10-2_ppc64el.deb ----------------------------------------- new debian package, version 2.0. size 142916 bytes: control archive=2512 bytes. 1317 bytes, 29 lines control 4027 bytes, 54 lines md5sums Package: libjellyfish-2.0-dev Source: jellyfish Version: 2.2.10-2 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 760 Depends: libjellyfish-2.0-2 (= 2.2.10-2) Section: libdevel Priority: optional Multi-Arch: same Homepage: http://www.cbcb.umd.edu/software/jellyfish/ Description: count k-mers in DNA sequences (development files of jellyfish) JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. . JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command. . This package contains the development files (static library and header files) drwxr-xr-x root/root 0 2018-12-24 14:46 ./ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/include/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/include/jellyfish/ -rw-r--r-- root/root 2055 2018-12-24 14:46 ./usr/include/jellyfish/allocators_mmap.hpp -rw-r--r-- root/root 6429 2018-12-24 14:46 ./usr/include/jellyfish/atomic_bits_array.hpp -rw-r--r-- root/root 5229 2018-12-24 14:46 ./usr/include/jellyfish/atomic_field.hpp -rw-r--r-- root/root 1851 2018-12-24 14:46 ./usr/include/jellyfish/atomic_gcc.hpp -rw-r--r-- root/root 731 2018-12-24 14:46 ./usr/include/jellyfish/backtrace.hpp -rw-r--r-- root/root 7288 2018-12-24 14:46 ./usr/include/jellyfish/binary_dumper.hpp -rw-r--r-- root/root 3939 2018-12-24 14:46 ./usr/include/jellyfish/bloom_common.hpp -rw-r--r-- root/root 7237 2018-12-24 14:46 ./usr/include/jellyfish/bloom_counter2.hpp -rw-r--r-- root/root 5906 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-rw-r--r-- root/root 9358 2018-12-24 14:46 ./usr/include/jellyfish/mer_overlap_sequence_parser.hpp -rw-r--r-- root/root 3706 2018-12-24 14:46 ./usr/include/jellyfish/mer_qual_iterator.hpp -rw-r--r-- root/root 8525 2018-12-24 14:46 ./usr/include/jellyfish/misc.hpp -rw-r--r-- root/root 10459 2018-12-24 14:46 ./usr/include/jellyfish/offsets_key_value.hpp -rw-r--r-- root/root 1419 2018-12-24 14:46 ./usr/include/jellyfish/parser_common.hpp -rw-r--r-- root/root 13240 2018-12-24 14:46 ./usr/include/jellyfish/rectangular_binary_matrix.hpp -rw-r--r-- root/root 2770 2018-12-24 14:46 ./usr/include/jellyfish/sam_format.hpp -rw-r--r-- root/root 4009 2018-12-24 14:46 ./usr/include/jellyfish/simple_circular_buffer.hpp -rw-r--r-- root/root 3845 2018-12-24 14:46 ./usr/include/jellyfish/sorted_dumper.hpp -rw-r--r-- root/root 5528 2018-12-24 14:46 ./usr/include/jellyfish/stdio_filebuf.hpp -rw-r--r-- root/root 1061 2018-12-24 14:46 ./usr/include/jellyfish/storage.hpp -rw-r--r-- root/root 2495 2018-12-24 14:46 ./usr/include/jellyfish/stream_iterator.hpp -rw-r--r-- root/root 6777 2018-12-24 14:46 ./usr/include/jellyfish/stream_manager.hpp -rw-r--r-- root/root 2522 2018-12-24 14:46 ./usr/include/jellyfish/text_dumper.hpp -rw-r--r-- root/root 1453 2018-12-24 14:46 ./usr/include/jellyfish/thread_exec.hpp -rw-r--r-- root/root 2343 2018-12-24 14:46 ./usr/include/jellyfish/time.hpp -rw-r--r-- root/root 2058 2018-12-24 14:46 ./usr/include/jellyfish/token_ring.hpp -rw-r--r-- root/root 6537 2018-12-24 14:46 ./usr/include/jellyfish/whole_sequence_parser.hpp drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/lib/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/lib/powerpc64le-linux-gnu/ -rw-r--r-- root/root 370362 2018-12-24 14:46 ./usr/lib/powerpc64le-linux-gnu/libjellyfish-2.0.a -rw-r--r-- root/root 1010 2018-12-24 14:46 ./usr/lib/powerpc64le-linux-gnu/libjellyfish-2.0.la lrwxrwxrwx root/root 0 2018-12-24 14:46 ./usr/lib/powerpc64le-linux-gnu/libjellyfish-2.0.so -> libjellyfish-2.0.so.2.0.0 drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/lib/powerpc64le-linux-gnu/pkgconfig/ -rw-r--r-- root/root 280 2018-12-24 14:46 ./usr/lib/powerpc64le-linux-gnu/pkgconfig/jellyfish-2.0.pc drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/doc/libjellyfish-2.0-dev/ lrwxrwxrwx root/root 0 2018-12-24 14:46 ./usr/share/doc/libjellyfish-2.0-dev/changelog.Debian.gz -> ../libjellyfish-2.0-2/changelog.Debian.gz -rw-r--r-- root/root 6282 2018-03-12 12:22 ./usr/share/doc/libjellyfish-2.0-dev/copyright libjellyfish-perl_2.2.10-2_ppc64el.deb -------------------------------------- new debian package, version 2.0. size 56604 bytes: control archive=1124 bytes. 1341 bytes, 28 lines control 267 bytes, 3 lines md5sums Package: libjellyfish-perl Source: jellyfish Version: 2.2.10-2 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 227 Depends: perl (>= 5.28.1-3), perlapi-5.28.1, libc6 (>= 2.17), libgcc1 (>= 1:3.0), libjellyfish-2.0-2 Section: perl Priority: optional Multi-Arch: same Homepage: http://www.cbcb.umd.edu/software/jellyfish/ Description: count k-mers in DNA sequences (Perl bindings of jellyfish) JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. . JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command. . This package contains the Perl bindings of jellyfish. drwxr-xr-x root/root 0 2018-12-24 14:46 ./ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/lib/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/lib/powerpc64le-linux-gnu/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/lib/powerpc64le-linux-gnu/perl5/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/lib/powerpc64le-linux-gnu/perl5/5.28/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/lib/powerpc64le-linux-gnu/perl5/5.28/auto/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/lib/powerpc64le-linux-gnu/perl5/5.28/auto/jellyfish/ -rw-r--r-- root/root 199808 2018-12-24 14:46 ./usr/lib/powerpc64le-linux-gnu/perl5/5.28/auto/jellyfish/jellyfish.so -rw-r--r-- root/root 7413 2018-12-24 14:46 ./usr/lib/powerpc64le-linux-gnu/perl5/5.28/jellyfish.pm drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-12-24 14:46 ./usr/share/doc/libjellyfish-perl/ lrwxrwxrwx root/root 0 2018-12-24 14:46 ./usr/share/doc/libjellyfish-perl/changelog.Debian.gz -> ../libjellyfish-2.0-2/changelog.Debian.gz -rw-r--r-- root/root 6282 2018-03-12 12:22 ./usr/share/doc/libjellyfish-perl/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build-Space: 1485592 Build-Time: 420 Distribution: disco-proposed Host Architecture: ppc64el Install-Time: 21 Job: jellyfish_2.2.10-2.dsc Machine Architecture: ppc64el Package: jellyfish Package-Time: 442 Source-Version: 2.2.10-2 Space: 1485592 Status: successful Version: 2.2.10-2 -------------------------------------------------------------------------------- Finished at 20181224-2323 Build needed 00:07:22, 1485592k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=ppc64el PACKAGEBUILD-16202997 Scanning for processes to kill in build PACKAGEBUILD-16202997