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jellyfish package

jellyfish 2.2.10-2build1 source package in Ubuntu

Changelog

jellyfish (2.2.10-2build1) focal; urgency=medium

  * No-change rebuild for the perl update.

 -- Matthias Klose <email address hidden>  Fri, 18 Oct 2019 19:28:09 +0000

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Uploaded by:
Matthias Klose
Uploaded to:
Focal
Original maintainer:
Debian Med
Architectures:
any
Section:
science
Urgency:
Medium Urgency

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File Size SHA-256 Checksum
jellyfish_2.2.10.orig.tar.gz 661.1 KiB 49137356b1cdd014cb70e866f0739fc3fafea6421fa22cc64bcfeba55fc1dc27
jellyfish_2.2.10-2build1.debian.tar.xz 11.9 KiB f641437027b4a6d862bb6933883ddca4eb7fda6ddf1f74121ff0c2fd02712554
jellyfish_2.2.10-2build1.dsc 2.5 KiB 56fccf6f3683b0b03b339bc7878e90f29d80b9abae8170be74b593e9a92ac7fd

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Binary packages built by this source

jellyfish: count k-mers in DNA sequences

 JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
 DNA. A k-mer is a substring of length k, and counting the occurrences
 of all such substrings is a central step in many analyses of DNA
 sequence. JELLYFISH can count k-mers using an order of magnitude less
 memory and an order of magnitude faster than other k-mer counting
 packages by using an efficient encoding of a hash table and by
 exploiting the "compare-and-swap" CPU instruction to increase
 parallelism.
 .
 JELLYFISH is a command-line program that reads FASTA and multi-FASTA
 files containing DNA sequences. It outputs its k-mer counts in an
 binary format, which can be translated into a human-readable text
 format using the "jellyfish dump" command.

jellyfish-dbgsym: debug symbols for jellyfish
jellyfish-examples: count k-mers in DNA sequences (examples for testing)

 JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
 DNA. A k-mer is a substring of length k, and counting the occurrences
 of all such substrings is a central step in many analyses of DNA
 sequence. JELLYFISH can count k-mers using an order of magnitude less
 memory and an order of magnitude faster than other k-mer counting
 packages by using an efficient encoding of a hash table and by
 exploiting the "compare-and-swap" CPU instruction to increase
 parallelism.
 .
 JELLYFISH is a command-line program that reads FASTA and multi-FASTA
 files containing DNA sequences. It outputs its k-mer counts in an
 binary format, which can be translated into a human-readable text
 format using the "jellyfish dump" command.
 .
 This package contains examples to test the package

jellyfish-examples-dbgsym: debug symbols for jellyfish-examples
libjellyfish-2.0-2: count k-mers in DNA sequences (dynamic library of jellyfish)

 JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
 DNA. A k-mer is a substring of length k, and counting the occurrences
 of all such substrings is a central step in many analyses of DNA
 sequence. JELLYFISH can count k-mers using an order of magnitude less
 memory and an order of magnitude faster than other k-mer counting
 packages by using an efficient encoding of a hash table and by
 exploiting the "compare-and-swap" CPU instruction to increase
 parallelism.
 .
 JELLYFISH is a command-line program that reads FASTA and multi-FASTA
 files containing DNA sequences. It outputs its k-mer counts in an
 binary format, which can be translated into a human-readable text
 format using the "jellyfish dump" command.
 .
 This package contains the dynamic library the main executable of
 jellyfish is linked to.

libjellyfish-2.0-2-dbgsym: debug symbols for libjellyfish-2.0-2
libjellyfish-2.0-dev: count k-mers in DNA sequences (development files of jellyfish)

 JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
 DNA. A k-mer is a substring of length k, and counting the occurrences
 of all such substrings is a central step in many analyses of DNA
 sequence. JELLYFISH can count k-mers using an order of magnitude less
 memory and an order of magnitude faster than other k-mer counting
 packages by using an efficient encoding of a hash table and by
 exploiting the "compare-and-swap" CPU instruction to increase
 parallelism.
 .
 JELLYFISH is a command-line program that reads FASTA and multi-FASTA
 files containing DNA sequences. It outputs its k-mer counts in an
 binary format, which can be translated into a human-readable text
 format using the "jellyfish dump" command.
 .
 This package contains the development files (static library and
 header files)

libjellyfish-perl: count k-mers in DNA sequences (Perl bindings of jellyfish)

 JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
 DNA. A k-mer is a substring of length k, and counting the occurrences
 of all such substrings is a central step in many analyses of DNA
 sequence. JELLYFISH can count k-mers using an order of magnitude less
 memory and an order of magnitude faster than other k-mer counting
 packages by using an efficient encoding of a hash table and by
 exploiting the "compare-and-swap" CPU instruction to increase
 parallelism.
 .
 JELLYFISH is a command-line program that reads FASTA and multi-FASTA
 files containing DNA sequences. It outputs its k-mer counts in an
 binary format, which can be translated into a human-readable text
 format using the "jellyfish dump" command.
 .
 This package contains the Perl bindings of jellyfish.

libjellyfish-perl-dbgsym: debug symbols for libjellyfish-perl