jellyfish 2.2.6-1build3 source package in Ubuntu
Changelog
jellyfish (2.2.6-1build3) artful; urgency=medium * No change rebuild to drop Python 3.5 support. -- Michael Hudson-Doyle <email address hidden> Fri, 04 Aug 2017 16:25:44 +1200
Upload details
- Uploaded by:
- Michael Hudson-Doyle
- Uploaded to:
- Artful
- Original maintainer:
- Debian Med
- Architectures:
- any-amd64
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| jellyfish_2.2.6.orig.tar.gz | 645.4 KiB | 800bc60aaec273dc04296ee7493e714457f2fe88551f76693e5d9f9a679dd35e |
| jellyfish_2.2.6-1build3.debian.tar.xz | 10.1 KiB | e5b91538cdbab5cd34b8443184691232d3a161f96991baa9b5a67be0d4342ea4 |
| jellyfish_2.2.6-1build3.dsc | 2.5 KiB | b7ef9271eb2ebbbc5fdbe0a3f85fb005ad4ed422ae87d69232a38cba116dca13 |
Available diffs
- diff from 2.2.6-1build1 to 2.2.6-1build3 (377 bytes)
- diff from 2.2.6-1build2 to 2.2.6-1build3 (327 bytes)
Binary packages built by this source
- jellyfish: count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
- jellyfish-dbgsym: debug symbols for jellyfish
- jellyfish-examples: No summary available for jellyfish-examples in ubuntu artful.
No description available for jellyfish-examples in ubuntu artful.
- jellyfish-examples-dbgsym: No summary available for jellyfish-examples-dbgsym in ubuntu artful.
No description available for jellyfish-
examples- dbgsym in ubuntu artful.
- libjellyfish-2.0-2: count k-mers in DNA sequences (dynamic library of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the dynamic library the main executable of
jellyfish is linked to.
- libjellyfish-2.0-2-dbgsym: debug symbols for libjellyfish-2.0-2
- libjellyfish-2.0-dev: No summary available for libjellyfish-2.0-dev in ubuntu artful.
No description available for libjellyfish-
2.0-dev in ubuntu artful.
- libjellyfish-perl: No summary available for libjellyfish-perl in ubuntu artful.
No description available for libjellyfish-perl in ubuntu artful.
- libjellyfish-perl-dbgsym: No summary available for libjellyfish-perl-dbgsym in ubuntu artful.
No description available for libjellyfish-
perl-dbgsym in ubuntu artful.
- python3-dna-jellyfish: count k-mers in DNA sequences (Python bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the Python bindings of jellyfish.
- python3-dna-jellyfish-dbgsym: debug symbols for python3-dna-jellyfish
