jellyfish 2.2.8-3build2 source package in Ubuntu

Changelog

jellyfish (2.2.8-3build2) cosmic; urgency=medium

  * No-change rebuild to build for python3.7.

 -- Matthias Klose <email address hidden>  Thu, 28 Jun 2018 06:53:38 +0000

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Uploaded by:
Matthias Klose on 2018-06-28
Uploaded to:
Cosmic
Original maintainer:
Debian Med
Architectures:
any
Section:
science
Urgency:
Medium Urgency

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Series Pocket Published Component Section
Cosmic release on 2018-07-06 universe science

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jellyfish_2.2.8.orig.tar.gz 658.8 KiB bc6539062332ade8a6714535c8bc9aced961e9d5e7053fe07e428180af016005
jellyfish_2.2.8-3build2.debian.tar.xz 11.9 KiB 003b9373ec5461b6d9fcce1b4f51db45de9fc79894cf05515b814795238e6070
jellyfish_2.2.8-3build2.dsc 2.5 KiB 6589f872a4f3252acae54457005f7d5a4fd1ebf7c9ce7ba2fd4883c73dedfaf2

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Binary packages built by this source

jellyfish: count k-mers in DNA sequences

 JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
 DNA. A k-mer is a substring of length k, and counting the occurrences
 of all such substrings is a central step in many analyses of DNA
 sequence. JELLYFISH can count k-mers using an order of magnitude less
 memory and an order of magnitude faster than other k-mer counting
 packages by using an efficient encoding of a hash table and by
 exploiting the "compare-and-swap" CPU instruction to increase
 parallelism.
 .
 JELLYFISH is a command-line program that reads FASTA and multi-FASTA
 files containing DNA sequences. It outputs its k-mer counts in an
 binary format, which can be translated into a human-readable text
 format using the "jellyfish dump" command.

jellyfish-dbgsym: debug symbols for jellyfish
jellyfish-examples: count k-mers in DNA sequences (examples for testing)

 JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
 DNA. A k-mer is a substring of length k, and counting the occurrences
 of all such substrings is a central step in many analyses of DNA
 sequence. JELLYFISH can count k-mers using an order of magnitude less
 memory and an order of magnitude faster than other k-mer counting
 packages by using an efficient encoding of a hash table and by
 exploiting the "compare-and-swap" CPU instruction to increase
 parallelism.
 .
 JELLYFISH is a command-line program that reads FASTA and multi-FASTA
 files containing DNA sequences. It outputs its k-mer counts in an
 binary format, which can be translated into a human-readable text
 format using the "jellyfish dump" command.
 .
 This package contains examples to test the package

jellyfish-examples-dbgsym: debug symbols for jellyfish-examples
libjellyfish-2.0-2: count k-mers in DNA sequences (dynamic library of jellyfish)

 JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
 DNA. A k-mer is a substring of length k, and counting the occurrences
 of all such substrings is a central step in many analyses of DNA
 sequence. JELLYFISH can count k-mers using an order of magnitude less
 memory and an order of magnitude faster than other k-mer counting
 packages by using an efficient encoding of a hash table and by
 exploiting the "compare-and-swap" CPU instruction to increase
 parallelism.
 .
 JELLYFISH is a command-line program that reads FASTA and multi-FASTA
 files containing DNA sequences. It outputs its k-mer counts in an
 binary format, which can be translated into a human-readable text
 format using the "jellyfish dump" command.
 .
 This package contains the dynamic library the main executable of
 jellyfish is linked to.

libjellyfish-2.0-2-dbgsym: debug symbols for libjellyfish-2.0-2
libjellyfish-2.0-dev: count k-mers in DNA sequences (development files of jellyfish)

 JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
 DNA. A k-mer is a substring of length k, and counting the occurrences
 of all such substrings is a central step in many analyses of DNA
 sequence. JELLYFISH can count k-mers using an order of magnitude less
 memory and an order of magnitude faster than other k-mer counting
 packages by using an efficient encoding of a hash table and by
 exploiting the "compare-and-swap" CPU instruction to increase
 parallelism.
 .
 JELLYFISH is a command-line program that reads FASTA and multi-FASTA
 files containing DNA sequences. It outputs its k-mer counts in an
 binary format, which can be translated into a human-readable text
 format using the "jellyfish dump" command.
 .
 This package contains the development files (static library and
 header files)

libjellyfish-perl: count k-mers in DNA sequences (Perl bindings of jellyfish)

 JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
 DNA. A k-mer is a substring of length k, and counting the occurrences
 of all such substrings is a central step in many analyses of DNA
 sequence. JELLYFISH can count k-mers using an order of magnitude less
 memory and an order of magnitude faster than other k-mer counting
 packages by using an efficient encoding of a hash table and by
 exploiting the "compare-and-swap" CPU instruction to increase
 parallelism.
 .
 JELLYFISH is a command-line program that reads FASTA and multi-FASTA
 files containing DNA sequences. It outputs its k-mer counts in an
 binary format, which can be translated into a human-readable text
 format using the "jellyfish dump" command.
 .
 This package contains the Perl bindings of jellyfish.

libjellyfish-perl-dbgsym: debug symbols for libjellyfish-perl
python3-dna-jellyfish: count k-mers in DNA sequences (Python bindings of jellyfish)

 JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
 DNA. A k-mer is a substring of length k, and counting the occurrences
 of all such substrings is a central step in many analyses of DNA
 sequence. JELLYFISH can count k-mers using an order of magnitude less
 memory and an order of magnitude faster than other k-mer counting
 packages by using an efficient encoding of a hash table and by
 exploiting the "compare-and-swap" CPU instruction to increase
 parallelism.
 .
 JELLYFISH is a command-line program that reads FASTA and multi-FASTA
 files containing DNA sequences. It outputs its k-mer counts in an
 binary format, which can be translated into a human-readable text
 format using the "jellyfish dump" command.
 .
 This package contains the Python bindings of jellyfish.

python3-dna-jellyfish-dbgsym: debug symbols for python3-dna-jellyfish