kallisto 0.46.1+dfsg-2build2 source package in Ubuntu

Changelog

kallisto (0.46.1+dfsg-2build2) groovy; urgency=medium

  * No-change rebuild against libhdf5-103-1

 -- Graham Inggs <email address hidden>  Wed, 13 May 2020 13:12:02 +0000

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Uploaded by:
Graham Inggs
Uploaded to:
Groovy
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

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kallisto_0.46.1+dfsg.orig.tar.xz 827.6 KiB 4d8b0bd6bac52eb714df53e81f4a5248c65ba46b70f0edf61a1dfe3dfde62f52
kallisto_0.46.1+dfsg-2build2.debian.tar.xz 5.8 KiB 8ee7f72dc54e9d2d2c45de4e66a97cb8cbefd59ea45716512e2e9cf7aaf66205
kallisto_0.46.1+dfsg-2build2.dsc 2.1 KiB 391b0e342826ca99b73a77452fbad0196fe3f3556956b53b054a8dc99eb6d1a1

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Binary packages built by this source

kallisto: near-optimal RNA-Seq quantification

 Kallisto is a program for quantifying abundances of transcripts from
 RNA-Seq data, or more generally of target sequences using high-throughput
 sequencing reads. It is based on the novel idea of pseudoalignment for
 rapidly determining the compatibility of reads with targets, without the
 need for alignment. On benchmarks with standard RNA-Seq data, kallisto
 can quantify 30 million human reads in less than 3 minutes on a Mac
 desktop computer using only the read sequences and a transcriptome index
 that itself takes less than 10 minutes to build. Pseudoalignment of
 reads preserves the key information needed for quantification, and
 kallisto is therefore not only fast, but also as accurate than existing
 quantification tools. In fact, because the pseudoalignment procedure is
 robust to errors in the reads, in many benchmarks kallisto significantly
 outperforms existing tools.

kallisto-dbgsym: debug symbols for kallisto
kallisto-examples: near-optimal RNA-Seq quantification (example data)

 Kallisto is a program for quantifying abundances of transcripts from
 RNA-Seq data, or more generally of target sequences using high-throughput
 sequencing reads. It is based on the novel idea of pseudoalignment for
 rapidly determining the compatibility of reads with targets, without the
 need for alignment. On benchmarks with standard RNA-Seq data, kallisto
 can quantify 30 million human reads in less than 3 minutes on a Mac
 desktop computer using only the read sequences and a transcriptome index
 that itself takes less than 10 minutes to build. Pseudoalignment of
 reads preserves the key information needed for quantification, and
 kallisto is therefore not only fast, but also as accurate than existing
 quantification tools. In fact, because the pseudoalignment procedure is
 robust to errors in the reads, in many benchmarks kallisto significantly
 outperforms existing tools.
 .
 This package contains usage examples which are used in autopkgtest.