https://launchpad.net/ubuntu/+source/kallisto/0.46.2+dfsg-3/+build/21475498 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-049 4.15.0-142-generic #146-Ubuntu SMP Tue Apr 13 01:11:19 UTC 2021 x86_64 Buildd toolchain package versions: launchpad-buildd_195~480~ubuntu18.04.1 python3-lpbuildd_195~480~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.8 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 29 Apr 12:12:00 ntpdate[1674]: adjust time server 10.211.37.1 offset -0.000180 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-21475498 --image-type chroot /home/buildd/filecache-default/470b94eb81e7101f5c7afd2cf17d7483b3ea9d4e Creating target for build PACKAGEBUILD-21475498 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-21475498 Starting target for build PACKAGEBUILD-21475498 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-21475498 'deb http://ftpmaster.internal/ubuntu impish main universe' 'deb http://ftpmaster.internal/ubuntu impish-security main universe' 'deb http://ftpmaster.internal/ubuntu impish-updates main universe' 'deb http://ftpmaster.internal/ubuntu impish-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-21475498 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-21475498 Updating target for build PACKAGEBUILD-21475498 Get:1 http://ftpmaster.internal/ubuntu impish InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu impish-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu impish-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu impish-proposed InRelease [115 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main amd64 Packages [1401 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu impish/universe amd64 Packages [13.2 MB] Get:8 http://ftpmaster.internal/ubuntu impish/universe Translation-en [5441 kB] Get:9 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 Packages [65.8 kB] Get:10 http://ftpmaster.internal/ubuntu impish-proposed/main Translation-en [17.4 kB] Get:11 http://ftpmaster.internal/ubuntu impish-proposed/universe amd64 Packages [330 kB] Get:12 http://ftpmaster.internal/ubuntu impish-proposed/universe Translation-en [98.9 kB] Fetched 21.7 MB in 4s (5443 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files cpp cpp-10 dpkg dpkg-dev g++ g++-10 gcc gcc-10 gcc-10-base gcc-11-base libapt-pkg6.0 libasan6 libatomic1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libdpkg-perl libgcc-10-dev libgcc-s1 libgomp1 libitm1 liblsan0 libquadmath0 libstdc++-10-dev libstdc++6 libtsan0 libubsan1 libzstd1 linux-libc-dev sysvinit-utils 34 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 58.5 MB of archives. After this operation, 5830 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libc6-dev amd64 2.33-0ubuntu6 [2142 kB] Get:2 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libc-dev-bin amd64 2.33-0ubuntu6 [19.2 kB] Get:3 http://ftpmaster.internal/ubuntu impish/main amd64 linux-libc-dev amd64 5.11.0-16.17 [1202 kB] Get:4 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libubsan1 amd64 11.1.0-1ubuntu1 [840 kB] Get:5 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libtsan0 amd64 11.1.0-1ubuntu1 [2026 kB] Get:6 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libquadmath0 amd64 11.1.0-1ubuntu1 [146 kB] Get:7 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 liblsan0 amd64 11.1.0-1ubuntu1 [891 kB] Get:8 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libitm1 amd64 11.1.0-1ubuntu1 [26.4 kB] Get:9 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libgomp1 amd64 11.1.0-1ubuntu1 [107 kB] Get:10 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 gcc-11-base amd64 11.1.0-1ubuntu1 [18.8 kB] Get:11 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libgcc-s1 amd64 11.1.0-1ubuntu1 [42.1 kB] Get:12 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libcc1-0 amd64 11.1.0-1ubuntu1 [48.6 kB] Get:13 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libatomic1 amd64 11.1.0-1ubuntu1 [9228 B] Get:14 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libasan6 amd64 11.1.0-1ubuntu1 [2045 kB] Get:15 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libstdc++6 amd64 11.1.0-1ubuntu1 [582 kB] Get:16 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libc6 amd64 2.33-0ubuntu6 [2697 kB] Get:17 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 base-files amd64 11.1ubuntu2 [61.1 kB] Get:18 http://ftpmaster.internal/ubuntu impish/main amd64 dpkg amd64 1.20.9ubuntu1 [1268 kB] Get:19 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libc-bin amd64 2.33-0ubuntu6 [646 kB] Get:20 http://ftpmaster.internal/ubuntu impish/main amd64 sysvinit-utils amd64 2.96-7ubuntu1 [20.1 kB] Get:21 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libzstd1 amd64 1.4.8+dfsg-2.1 [290 kB] Get:22 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libapt-pkg6.0 amd64 2.3.2 [813 kB] Get:23 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 apt amd64 2.3.2 [1304 kB] Get:24 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 g++-10 amd64 10.3.0-2ubuntu1 [9806 kB] Get:25 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 gcc-10 amd64 10.3.0-2ubuntu1 [17.5 MB] Get:26 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 cpp-10 amd64 10.3.0-2ubuntu1 [8613 kB] Get:27 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libstdc++-10-dev amd64 10.3.0-2ubuntu1 [1757 kB] Get:28 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libgcc-10-dev amd64 10.3.0-2ubuntu1 [2340 kB] Get:29 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 gcc-10-base amd64 10.3.0-2ubuntu1 [20.5 kB] Get:30 http://ftpmaster.internal/ubuntu impish/main amd64 g++ amd64 4:10.3.0-1ubuntu3 [1608 B] Get:31 http://ftpmaster.internal/ubuntu impish/main amd64 gcc amd64 4:10.3.0-1ubuntu3 [5216 B] Get:32 http://ftpmaster.internal/ubuntu impish/main amd64 cpp amd64 4:10.3.0-1ubuntu3 [27.7 kB] Get:33 http://ftpmaster.internal/ubuntu impish/main amd64 dpkg-dev all 1.20.9ubuntu1 [937 kB] Get:34 http://ftpmaster.internal/ubuntu impish/main amd64 libdpkg-perl all 1.20.9ubuntu1 [232 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 58.5 MB in 1s (49.6 MB/s) (Reading database ... 13130 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.33-0ubuntu6_amd64.deb ... Unpacking libc6-dev:amd64 (2.33-0ubuntu6) over (2.33-0ubuntu5) ... Preparing to unpack .../1-libc-dev-bin_2.33-0ubuntu6_amd64.deb ... Unpacking libc-dev-bin (2.33-0ubuntu6) over (2.33-0ubuntu5) ... Preparing to unpack .../2-linux-libc-dev_5.11.0-16.17_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.11.0-16.17) over (5.11.0-14.15) ... Preparing to unpack .../3-libubsan1_11.1.0-1ubuntu1_amd64.deb ... Unpacking libubsan1:amd64 (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../4-libtsan0_11.1.0-1ubuntu1_amd64.deb ... Unpacking libtsan0:amd64 (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../5-libquadmath0_11.1.0-1ubuntu1_amd64.deb ... Unpacking libquadmath0:amd64 (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../6-liblsan0_11.1.0-1ubuntu1_amd64.deb ... Unpacking liblsan0:amd64 (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... 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Installing new version of config file /etc/dpkg/origins/debian ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Updating /etc/profile to current default. (Reading database ... 13130 files and directories currently installed.) Preparing to unpack .../dpkg_1.20.9ubuntu1_amd64.deb ... Unpacking dpkg (1.20.9ubuntu1) over (1.20.7.1ubuntu4) ... Setting up dpkg (1.20.9ubuntu1) ... (Reading database ... 13135 files and directories currently installed.) Preparing to unpack .../libc-bin_2.33-0ubuntu6_amd64.deb ... Unpacking libc-bin (2.33-0ubuntu6) over (2.33-0ubuntu5) ... Setting up libc-bin (2.33-0ubuntu6) ... (Reading database ... 13135 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-7ubuntu1_amd64.deb ... Unpacking sysvinit-utils (2.96-7ubuntu1) over (2.96-6ubuntu1) ... Setting up sysvinit-utils (2.96-7ubuntu1) ... (Reading database ... 13135 files and directories currently installed.) Preparing to unpack .../libzstd1_1.4.8+dfsg-2.1_amd64.deb ... Unpacking libzstd1:amd64 (1.4.8+dfsg-2.1) over (1.4.8+dfsg-2build2) ... Setting up libzstd1:amd64 (1.4.8+dfsg-2.1) ... (Reading database ... 13135 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.3.2_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.3.2) over (2.2.3) ... Setting up libapt-pkg6.0:amd64 (2.3.2) ... (Reading database ... 13135 files and directories currently installed.) Preparing to unpack .../archives/apt_2.3.2_amd64.deb ... Unpacking apt (2.3.2) over (2.2.3) ... Setting up apt (2.3.2) ... (Reading database ... 13135 files and directories currently installed.) Preparing to unpack .../00-g++-10_10.3.0-2ubuntu1_amd64.deb ... Unpacking g++-10 (10.3.0-2ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../01-gcc-10_10.3.0-2ubuntu1_amd64.deb ... Unpacking gcc-10 (10.3.0-2ubuntu1) over (10.3.0-1ubuntu1) ... 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Setting up dpkg-dev (1.20.9ubuntu1) ... Setting up gcc-10 (10.3.0-2ubuntu1) ... Setting up cpp (4:10.3.0-1ubuntu3) ... Setting up libc6-dev:amd64 (2.33-0ubuntu6) ... Setting up libstdc++-10-dev:amd64 (10.3.0-2ubuntu1) ... Setting up g++-10 (10.3.0-2ubuntu1) ... Setting up gcc (4:10.3.0-1ubuntu3) ... Setting up g++ (4:10.3.0-1ubuntu3) ... Processing triggers for libc-bin (2.33-0ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-21475498 amd64 impish-proposed -c chroot:build-PACKAGEBUILD-21475498 --arch=amd64 --dist=impish-proposed --nolog -A kallisto_0.46.2+dfsg-3.dsc Initiating build PACKAGEBUILD-21475498 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-142-generic #146-Ubuntu SMP Tue Apr 13 01:11:19 UTC 2021 x86_64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on lgw01-amd64-049.buildd +==============================================================================+ | kallisto 0.46.2+dfsg-3 (amd64) Thu, 29 Apr 2021 12:12:28 +0000 | +==============================================================================+ Package: kallisto Version: 0.46.2+dfsg-3 Source Version: 0.46.2+dfsg-3 Distribution: impish-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-21475498/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- kallisto_0.46.2+dfsg-3.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/kallisto-Nzvn2m/kallisto-0.46.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/kallisto-Nzvn2m' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-s1BQsE/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-s1BQsE/apt_archive ./ InRelease Get:2 copy:/<>/resolver-s1BQsE/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-s1BQsE/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-s1BQsE/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-s1BQsE/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (132 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-s1BQsE/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13137 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), cmake, libhdf5-dev, libhts-dev Filtered Build-Depends: debhelper-compat (= 12), cmake, libhdf5-dev, libhts-dev dpkg-deb: building package 'sbuild-build-depends-kallisto-dummy' in '/<>/resolver-s1BQsE/apt_archive/sbuild-build-depends-kallisto-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-kallisto-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-s1BQsE/apt_archive ./ InRelease Get:2 copy:/<>/resolver-s1BQsE/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-s1BQsE/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-s1BQsE/apt_archive ./ Sources [508 B] Get:5 copy:/<>/resolver-s1BQsE/apt_archive ./ Packages [589 B] Fetched 2060 B in 0s (159 kB/s) Reading package lists... Reading package lists... Install kallisto build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libasn1-8-heimdal libbrotli1 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libgssapi3-heimdal libhcrypto4-heimdal libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts3 libhx509-5-heimdal libicu67 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp24 libkrb5-26-heimdal libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libsz2 libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config libhdf5-doc liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libasn1-8-heimdal libbrotli1 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libgssapi3-heimdal libhcrypto4-heimdal libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts3 libhx509-5-heimdal libicu67 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp24 libkrb5-26-heimdal libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libsz2 libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf sbuild-build-depends-kallisto-dummy zlib1g-dev 0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded. Need to get 36.2 MB of archives. After this operation, 137 MB of additional disk space will be used. Get:1 copy:/<>/resolver-s1BQsE/apt_archive ./ sbuild-build-depends-kallisto-dummy 0.invalid.0 [880 B] Get:2 http://ftpmaster.internal/ubuntu impish/main amd64 bsdextrautils amd64 2.36.1-7ubuntu2 [81.6 kB] Get:3 http://ftpmaster.internal/ubuntu impish/main amd64 libuchardet0 amd64 0.0.7-1 [68.0 kB] Get:4 http://ftpmaster.internal/ubuntu impish/main amd64 groff-base amd64 1.22.4-6 [864 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main amd64 libpipeline1 amd64 1.5.3-1 [27.8 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main amd64 man-db amd64 2.9.4-2 [1154 kB] Get:7 http://ftpmaster.internal/ubuntu impish/main amd64 libelf1 amd64 0.183-8 [47.3 kB] Get:8 http://ftpmaster.internal/ubuntu impish/main amd64 libexpat1 amd64 2.2.10-2 [76.2 kB] Get:9 http://ftpmaster.internal/ubuntu impish/main amd64 libicu67 amd64 67.1-6ubuntu2 [8619 kB] Get:10 http://ftpmaster.internal/ubuntu impish/main amd64 libxml2 amd64 2.9.10+dfsg-6.3build2 [697 kB] Get:11 http://ftpmaster.internal/ubuntu impish/main amd64 libmagic-mgc amd64 1:5.39-3 [228 kB] Get:12 http://ftpmaster.internal/ubuntu impish/main amd64 libmagic1 amd64 1:5.39-3 [80.6 kB] Get:13 http://ftpmaster.internal/ubuntu impish/main amd64 file amd64 1:5.39-3 [23.7 kB] Get:14 http://ftpmaster.internal/ubuntu impish/main amd64 gettext-base amd64 0.21-3ubuntu2 [39.5 kB] Get:15 http://ftpmaster.internal/ubuntu impish/main amd64 libpsl5 amd64 0.21.0-1.2 [53.5 kB] Get:16 http://ftpmaster.internal/ubuntu impish/main amd64 libuv1 amd64 1.40.0-1 [81.6 kB] Get:17 http://ftpmaster.internal/ubuntu impish/main amd64 libsigsegv2 amd64 2.13-1ubuntu1 [14.2 kB] Get:18 http://ftpmaster.internal/ubuntu impish/main amd64 m4 amd64 1.4.18-5 [200 kB] Get:19 http://ftpmaster.internal/ubuntu impish/main amd64 autoconf all 2.69-14 [293 kB] Get:20 http://ftpmaster.internal/ubuntu impish/main amd64 autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:21 http://ftpmaster.internal/ubuntu impish/main amd64 automake all 1:1.16.3-2ubuntu1 [552 kB] Get:22 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7.7.0+dfsg-2 [107 kB] Get:32 http://ftpmaster.internal/ubuntu impish/main amd64 libkrb5-26-heimdal amd64 7.7.0+dfsg-2 [207 kB] Get:33 http://ftpmaster.internal/ubuntu impish/main amd64 libheimntlm0-heimdal amd64 7.7.0+dfsg-2 [15.1 kB] Get:34 http://ftpmaster.internal/ubuntu impish/main amd64 libgssapi3-heimdal amd64 7.7.0+dfsg-2 [96.5 kB] Get:35 http://ftpmaster.internal/ubuntu impish/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2ubuntu1 [14.7 kB] Get:36 http://ftpmaster.internal/ubuntu impish/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2ubuntu1 [49.3 kB] Get:37 http://ftpmaster.internal/ubuntu impish/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-2ubuntu1 [156 kB] Get:38 http://ftpmaster.internal/ubuntu impish/main amd64 libnghttp2-14 amd64 1.43.0-1 [72.5 kB] Get:39 http://ftpmaster.internal/ubuntu impish/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build2 [55.0 kB] Get:40 http://ftpmaster.internal/ubuntu impish/main amd64 libssh-4 amd64 0.9.5-1 [172 kB] Get:41 http://ftpmaster.internal/ubuntu impish/main amd64 libcurl4 amd64 7.74.0-1ubuntu2 [251 kB] Get:42 http://ftpmaster.internal/ubuntu impish/main amd64 libjsoncpp24 amd64 1.9.4-4 [75.2 kB] Get:43 http://ftpmaster.internal/ubuntu impish/main amd64 librhash0 amd64 1.4.1-1 [119 kB] Get:44 http://ftpmaster.internal/ubuntu impish/main amd64 cmake amd64 3.18.4-2ubuntu1 [5598 kB] Get:45 http://ftpmaster.internal/ubuntu impish/main amd64 libdebhelper-perl all 13.3.4ubuntu1 [61.1 kB] Get:46 http://ftpmaster.internal/ubuntu impish/main amd64 libtool all 2.4.6-15 [161 kB] Get:47 http://ftpmaster.internal/ubuntu impish/main amd64 dh-autoreconf all 20 [16.1 kB] Get:48 http://ftpmaster.internal/ubuntu impish/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:49 http://ftpmaster.internal/ubuntu impish/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:50 http://ftpmaster.internal/ubuntu impish/main amd64 libfile-stripnondeterminism-perl all 1.11.0-1 [17.0 kB] Get:51 http://ftpmaster.internal/ubuntu impish/main amd64 dh-strip-nondeterminism all 1.11.0-1 [5236 B] Get:52 http://ftpmaster.internal/ubuntu impish/main amd64 libdw1 amd64 0.183-8 [225 kB] Get:53 http://ftpmaster.internal/ubuntu impish/main amd64 debugedit amd64 1:0.1-0ubuntu2 [39.7 kB] Get:54 http://ftpmaster.internal/ubuntu impish/main amd64 dwz amd64 0.14-1 [98.1 kB] Get:55 http://ftpmaster.internal/ubuntu impish/main amd64 gettext amd64 0.21-3ubuntu2 [825 kB] Get:56 http://ftpmaster.internal/ubuntu impish/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:57 http://ftpmaster.internal/ubuntu impish/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:58 http://ftpmaster.internal/ubuntu impish/main amd64 debhelper all 13.3.4ubuntu1 [920 kB] Get:59 http://ftpmaster.internal/ubuntu impish/universe amd64 hdf5-helpers amd64 1.10.6+repack-2 [13.7 kB] Get:60 http://ftpmaster.internal/ubuntu impish/universe amd64 libaec0 amd64 1.0.4-1 [19.1 kB] Get:61 http://ftpmaster.internal/ubuntu 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1.10.6+repack-2 [54.0 kB] Get:71 http://ftpmaster.internal/ubuntu impish/universe amd64 libhdf5-hl-fortran-100 amd64 1.10.6+repack-2 [27.8 kB] Get:72 http://ftpmaster.internal/ubuntu impish/universe amd64 libhdf5-hl-cpp-100 amd64 1.10.6+repack-2 [9976 B] Get:73 http://ftpmaster.internal/ubuntu impish/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu6 [156 kB] Get:74 http://ftpmaster.internal/ubuntu impish/main amd64 libjpeg-turbo8 amd64 2.0.6-0ubuntu2 [117 kB] Get:75 http://ftpmaster.internal/ubuntu impish/main amd64 libjpeg-turbo8-dev amd64 2.0.6-0ubuntu2 [238 kB] Get:76 http://ftpmaster.internal/ubuntu impish/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:77 http://ftpmaster.internal/ubuntu impish/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:78 http://ftpmaster.internal/ubuntu impish/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:79 http://ftpmaster.internal/ubuntu impish/universe amd64 libaec-dev amd64 1.0.4-1 [16.9 kB] Get:80 http://ftpmaster.internal/ubuntu impish/universe amd64 libhdf5-dev amd64 1.10.6+repack-2 [2427 kB] Get:81 http://ftpmaster.internal/ubuntu impish/universe amd64 libhts3 amd64 1.11-4 [353 kB] Get:82 http://ftpmaster.internal/ubuntu impish/main amd64 liblzma-dev amd64 5.2.5-1.0build2 [151 kB] Get:83 http://ftpmaster.internal/ubuntu impish/universe amd64 libhts-dev amd64 1.11-4 [3831 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 36.2 MB in 1s (30.9 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 13137 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7ubuntu2_amd64.deb ... Unpacking bsdextrautils (2.36.1-7ubuntu2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../05-libelf1_0.183-8_amd64.deb ... Unpacking libelf1:amd64 (0.183-8) ... 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Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4ubuntu1) ... Setting up libbrotli1:amd64 (1.0.9-2build2) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up libdeflate0:amd64 (1.7-1ubuntu1) ... Setting up gettext-base (0.21-3ubuntu2) ... Setting up file (1:5.39-3) ... Setting up libaec0:amd64 (1.0.4-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2ubuntu1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:amd64 (1.40.0-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build2) ... Setting up libsigsegv2:amd64 (2.13-1ubuntu1) ... Setting up autopoint (0.21-3ubuntu2) ... Setting up libjpeg-turbo8:amd64 (2.0.6-0ubuntu2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2ubuntu1) ... Setting up libssh-4:amd64 (0.9.5-1) ... Setting up libgfortran5:amd64 (11.1.0-1ubuntu1) ... Setting up libroken18-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libjsoncpp24:amd64 (1.9.4-4) ... Setting up liblzma-dev:amd64 (5.2.5-1.0build2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu6) ... Setting up librhash0:amd64 (1.4.1-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up cmake-data (3.18.4-2ubuntu1) ... Setting up libdeflate-dev:amd64 (1.7-1ubuntu1) ... Setting up libelf1:amd64 (0.183-8) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.3build2) ... Setting up libsz2:amd64 (1.0.4-1) ... Setting up libheimbase1-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up libdw1:amd64 (0.183-8) ... Setting up libjpeg-turbo8-dev:amd64 (2.0.6-0ubuntu2) ... Setting up gettext (0.21-3ubuntu2) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:amd64 (3.4.3-2) ... Setting up libasn1-8-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libaec-dev:amd64 (1.0.4-1) ... Setting up m4 (1.4.18-5) ... Setting up libhcrypto4-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libwind0-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up libhdf5-103-1:amd64 (1.10.6+repack-2) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-6) ... Setting up libhdf5-cpp-103-1:amd64 (1.10.6+repack-2) ... Setting up debugedit (1:0.1-0ubuntu2) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up libhdf5-hl-100:amd64 (1.10.6+repack-2) ... Setting up automake (1:1.16.3-2ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhx509-5-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up libhdf5-hl-cpp-100:amd64 (1.10.6+repack-2) ... Setting up libhdf5-fortran-102:amd64 (1.10.6+repack-2) ... Setting up libhdf5-hl-fortran-100:amd64 (1.10.6+repack-2) ... Setting up libkrb5-26-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up debhelper (13.3.4ubuntu1) ... Setting up libheimntlm0-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libgssapi3-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libhdf5-dev (1.10.6+repack-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-2ubuntu1) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1ubuntu2) ... Setting up libcurl4-gnutls-dev:amd64 (7.74.0-1ubuntu2) ... Setting up libcurl4:amd64 (7.74.0-1ubuntu2) ... Setting up libhts3:amd64 (1.11-4) ... Setting up libhts-dev:amd64 (1.11-4) ... Setting up cmake (3.18.4-2ubuntu1) ... Setting up sbuild-build-depends-kallisto-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.33-0ubuntu6) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-142-generic amd64 (x86_64) Toolchain package versions: binutils_2.36.1-6ubuntu1 dpkg-dev_1.20.9ubuntu1 g++-10_10.3.0-2ubuntu1 gcc-10_10.3.0-2ubuntu1 libc6-dev_2.33-0ubuntu6 libstdc++-10-dev_10.3.0-2ubuntu1 libstdc++6_11.1.0-1ubuntu1 linux-libc-dev_5.11.0-16.17 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1build1 apt_2.3.2 autoconf_2.69-14 automake_1:1.16.3-2ubuntu1 autopoint_0.21-3ubuntu2 autotools-dev_20180224.1+nmu1 base-files_11.1ubuntu2 base-passwd_3.5.49 bash_5.1-2ubuntu1 binutils_2.36.1-6ubuntu1 binutils-common_2.36.1-6ubuntu1 binutils-x86-64-linux-gnu_2.36.1-6ubuntu1 bsdextrautils_2.36.1-7ubuntu2 bsdutils_1:2.36.1-7ubuntu2 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu3 ca-certificates_20210119build1 cmake_3.18.4-2ubuntu1 cmake-data_3.18.4-2ubuntu1 coreutils_8.32-4ubuntu2 cpp_4:10.3.0-1ubuntu3 cpp-10_10.3.0-2ubuntu1 dash_0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1 debconf_1.5.74 debhelper_13.3.4ubuntu1 debianutils_4.11.2 debugedit_1:0.1-0ubuntu2 dh-autoreconf_20 dh-strip-nondeterminism_1.11.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.9ubuntu1 dpkg-dev_1.20.9ubuntu1 dwz_0.14-1 e2fsprogs_1.45.7-1ubuntu2 fakeroot_1.25.3-1.1ubuntu2 file_1:5.39-3 findutils_4.8.0-1ubuntu1 g++_4:10.3.0-1ubuntu3 g++-10_10.3.0-2ubuntu1 gcc_4:10.3.0-1ubuntu3 gcc-10_10.3.0-2ubuntu1 gcc-10-base_10.3.0-2ubuntu1 gcc-11-base_11.1.0-1ubuntu1 gettext_0.21-3ubuntu2 gettext-base_0.21-3ubuntu2 gpg_2.2.20-1ubuntu3 gpg-agent_2.2.20-1ubuntu3 gpgconf_2.2.20-1ubuntu3 gpgv_2.2.20-1ubuntu3 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-2ubuntu3 hdf5-helpers_1.10.6+repack-2 hostname_3.23 init_1.60 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu1 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapparmor1_3.0.0-0ubuntu7 libapt-pkg6.0_2.3.2 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2 libargon2-1_0~20171227-0.2build21.04.0 libasan6_11.1.0-1ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-2 libassuan0_2.5.4-1ubuntu1 libatomic1_11.1.0-1ubuntu1 libattr1_1:2.4.48-6build1 libaudit-common_1:3.0-2ubuntu1 libaudit1_1:3.0-2ubuntu1 libbinutils_2.36.1-6ubuntu1 libblkid1_2.36.1-7ubuntu2 libbrotli1_1.0.9-2build2 libbz2-1.0_1.0.8-4ubuntu3 libc-bin_2.33-0ubuntu6 libc-dev-bin_2.33-0ubuntu6 libc6_2.33-0ubuntu6 libc6-dev_2.33-0ubuntu6 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1build1 libcc1-0_11.1.0-1ubuntu1 libcom-err2_1.45.7-1ubuntu2 libcrypt-dev_1:4.4.17-1ubuntu3 libcrypt1_1:4.4.17-1ubuntu3 libcryptsetup12_2:2.3.4-1ubuntu3 libctf-nobfd0_2.36.1-6ubuntu1 libctf0_2.36.1-6ubuntu1 libcurl3-gnutls_7.74.0-1ubuntu2 libcurl4_7.74.0-1ubuntu2 libcurl4-gnutls-dev_7.74.0-1ubuntu2 libdb5.3_5.3.28+dfsg1-0.6ubuntu4 libdebconfclient0_0.256ubuntu3 libdebhelper-perl_13.3.4ubuntu1 libdeflate-dev_1.7-1ubuntu1 libdeflate0_1.7-1ubuntu1 libdevmapper1.02.1_2:1.02.175-2ubuntu4 libdpkg-perl_1.20.9ubuntu1 libdw1_0.183-8 libelf1_0.183-8 libexpat1_2.2.10-2 libext2fs2_1.45.7-1ubuntu2 libfakeroot_1.25.3-1.1ubuntu2 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu5 libfile-stripnondeterminism-perl_1.11.0-1 libgcc-10-dev_10.3.0-2ubuntu1 libgcc-s1_11.1.0-1ubuntu1 libgcrypt20_1.8.7-2ubuntu2 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgfortran5_11.1.0-1ubuntu1 libgmp10_2:6.2.1+dfsg-1ubuntu2 libgnutls30_3.7.1-3ubuntu1 libgomp1_11.1.0-1ubuntu1 libgpg-error0_1.38-2build1 libgssapi-krb5-2_1.18.3-4 libgssapi3-heimdal_7.7.0+dfsg-2 libhcrypto4-heimdal_7.7.0+dfsg-2 libhdf5-103-1_1.10.6+repack-2 libhdf5-cpp-103-1_1.10.6+repack-2 libhdf5-dev_1.10.6+repack-2 libhdf5-fortran-102_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libheimbase1-heimdal_7.7.0+dfsg-2 libheimntlm0-heimdal_7.7.0+dfsg-2 libhogweed6_3.7-2.1ubuntu1 libhts-dev_1.11-4 libhts3_1.11-4 libhx509-5-heimdal_7.7.0+dfsg-2 libicu67_67.1-6ubuntu2 libidn2-0_2.3.0-5 libip4tc2_1.8.7-1ubuntu2 libisl23_0.23-1build1 libitm1_11.1.0-1ubuntu1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.6-0ubuntu2 libjpeg-turbo8-dev_2.0.6-0ubuntu2 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c5_0.15-2build2 libjsoncpp24_1.9.4-4 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2ubuntu1 libkmod2_28-1ubuntu2 libkrb5-26-heimdal_7.7.0+dfsg-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libldap-2.4-2_2.4.57+dfsg-2ubuntu1 liblockfile-bin_1.17-1 liblockfile1_1.17-1 liblsan0_11.1.0-1ubuntu1 liblz4-1_1.9.3-1build1 liblzma-dev_5.2.5-1.0build2 liblzma5_5.2.5-1.0build2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-7ubuntu2 libmpc3_1.2.0-1build1 libmpfr6_4.1.0-3build1 libncurses6_6.2+20201114-2build1 libncursesw6_6.2+20201114-2build1 libnettle8_3.7-2.1ubuntu1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libp11-kit0_0.23.22-1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpcre2-8-0_10.36-2ubuntu5 libpcre3_2:8.39-13build3 libperl5.32_5.32.1-3ubuntu2 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3build3 libprocps8_2:3.3.16-5ubuntu3 libpsl5_0.21.0-1.2 libquadmath0_11.1.0-1ubuntu1 libreadline8_8.1-1 librhash0_1.4.1-1 libroken18-heimdal_7.7.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2build2 libsasl2-2_2.1.27+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27+dfsg-2ubuntu1 libseccomp2_2.5.1-1ubuntu1 libselinux1_3.1-3build1 libsemanage-common_3.1-1ubuntu1 libsemanage1_3.1-1ubuntu1 libsepol1_3.1-1ubuntu1 libsigsegv2_2.13-1ubuntu1 libsmartcols1_2.36.1-7ubuntu2 libsqlite3-0_3.34.1-3 libss2_1.45.7-1ubuntu2 libssh-4_0.9.5-1 libssl1.1_1.1.1j-1ubuntu3 libstdc++-10-dev_10.3.0-2ubuntu1 libstdc++6_11.1.0-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_247.3-3ubuntu3 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2build1 libtirpc-common_1.3.1-1build1 libtirpc-dev_1.3.1-1build1 libtirpc3_1.3.1-1build1 libtool_2.4.6-15 libtsan0_11.1.0-1ubuntu1 libubsan1_11.1.0-1ubuntu1 libuchardet0_0.0.7-1 libudev1_247.3-3ubuntu3 libunistring2_0.9.10-4 libuuid1_2.36.1-7ubuntu2 libuv1_1.40.0-1 libwind0-heimdal_7.7.0+dfsg-2 libxml2_2.9.10+dfsg-6.3build2 libxxhash0_0.8.0-2 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.11.0-16.17 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu8 logsave_1.45.7-1ubuntu2 lsb-base_11.1.0ubuntu2 lto-disabled-list_7 m4_1.4.18-5 make_4.3-4ubuntu1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-7ubuntu2 ncurses-base_6.2+20201114-2build1 ncurses-bin_6.2+20201114-2build1 openssl_1.1.1j-1ubuntu3 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu8 patch_2.7.6-7 perl_5.32.1-3ubuntu2 perl-base_5.32.1-3ubuntu2 perl-modules-5.32_5.32.1-3ubuntu2 pinentry-curses_1.1.0-4build1 pkgbinarymangler_147 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu3 readline-common_8.1-1 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kallisto-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.14 systemd_247.3-3ubuntu3 systemd-sysv_247.3-3ubuntu3 systemd-timesyncd_247.3-3ubuntu3 sysvinit-utils_2.96-7ubuntu1 tar_1.34+dfsg-1build1 tzdata_2021a-1ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_24ubuntu3 util-linux_2.36.1-7ubuntu2 xz-utils_5.2.5-1.0build2 zlib1g_1:1.2.11.dfsg-2ubuntu6 zlib1g-dev_1:1.2.11.dfsg-2ubuntu6 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Mar 4 18:30:33 2021 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kallisto_0.46.2+dfsg-3.dsc dpkg-source: info: extracting kallisto in /<>/kallisto-0.46.2+dfsg dpkg-source: info: unpacking kallisto_0.46.2+dfsg.orig.tar.xz dpkg-source: info: unpacking kallisto_0.46.2+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_htslib.patch dpkg-source: info: applying spelling dpkg-source: info: applying htslib1.3 dpkg-source: info: applying Check_busOptions.seq_length_before_accessing.patch dpkg-source: info: applying gcc11.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-21475498 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-21475498 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-21475498 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package kallisto dpkg-buildpackage: info: source version 0.46.2+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/kallisto-0.46.2+dfsg' dh_auto_configure -- -DDEBIAN_BUILD=1 -DLINK=shared cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DDEBIAN_BUILD=1 -DLINK=shared .. -- The C compiler identification is GNU 10.3.0 -- The CXX compiler identification is GNU 10.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done shared build -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>/kallisto-0.46.2+dfsg' dh_auto_build cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<>/kallisto-0.46.2+dfsg -B/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/depend make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.46.2+dfsg /<>/kallisto-0.46.2+dfsg/src /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/kallisto_core.dir/DependInfo.cmake --color= Dependee "/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/kallisto_core.dir/DependInfo.cmake" is newer than depender "/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/kallisto_core.dir/depend.internal". Dependee "/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/kallisto_core.dir/depend.internal". Scanning dependencies of target kallisto_core make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/build make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' [ 4%] Building CXX object src/CMakeFiles/kallisto_core.dir/GeneModel.cpp.o [ 14%] Building CXX object src/CMakeFiles/kallisto_core.dir/BUSData.cpp.o [ 14%] Building CXX object src/CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/GeneModel.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/GeneModel.cpp cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/BUSData.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/BUSData.cpp cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/Bootstrap.cpp [ 19%] Building CXX object src/CMakeFiles/kallisto_core.dir/BUSTools.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/BUSTools.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/BUSTools.cpp [ 23%] Building CXX object src/CMakeFiles/kallisto_core.dir/H5Writer.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/H5Writer.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/H5Writer.cpp [ 28%] Building CXX object src/CMakeFiles/kallisto_core.dir/Kmer.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/Kmer.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/Kmer.cpp [ 33%] Building CXX object src/CMakeFiles/kallisto_core.dir/KmerIndex.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/KmerIndex.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/KmerIndex.cpp [ 38%] Building CXX object src/CMakeFiles/kallisto_core.dir/KmerIterator.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/KmerIterator.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/KmerIterator.cpp [ 42%] Building CXX object src/CMakeFiles/kallisto_core.dir/Merge.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/Merge.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/Merge.cpp [ 47%] Building CXX object src/CMakeFiles/kallisto_core.dir/MinCollector.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/MinCollector.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/MinCollector.cpp [ 52%] Building CXX object src/CMakeFiles/kallisto_core.dir/PlaintextWriter.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/PlaintextWriter.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/PlaintextWriter.cpp [ 57%] Building CXX object src/CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/ProcessReads.cpp [ 61%] Building CXX object src/CMakeFiles/kallisto_core.dir/PseudoBam.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/PseudoBam.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/PseudoBam.cpp [ 66%] Building CXX object src/CMakeFiles/kallisto_core.dir/common.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/common.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/common.cpp [ 71%] Building CXX object src/CMakeFiles/kallisto_core.dir/h5utils.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/h5utils.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/h5utils.cpp [ 76%] Building CXX object src/CMakeFiles/kallisto_core.dir/hash.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/hash.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/hash.cpp [ 80%] Building CXX object src/CMakeFiles/kallisto_core.dir/main.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/main.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/main.cpp [ 85%] Building CXX object src/CMakeFiles/kallisto_core.dir/weights.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/weights.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/weights.cpp [ 90%] Linking CXX static library libkallisto_core.a cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/kallisto_core.dir/cmake_clean_target.cmake cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kallisto_core.dir/link.txt --verbose=1 /usr/bin/ar qc libkallisto_core.a CMakeFiles/kallisto_core.dir/BUSData.cpp.o CMakeFiles/kallisto_core.dir/BUSTools.cpp.o CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o CMakeFiles/kallisto_core.dir/GeneModel.cpp.o CMakeFiles/kallisto_core.dir/H5Writer.cpp.o CMakeFiles/kallisto_core.dir/Kmer.cpp.o CMakeFiles/kallisto_core.dir/KmerIndex.cpp.o CMakeFiles/kallisto_core.dir/KmerIterator.cpp.o CMakeFiles/kallisto_core.dir/Merge.cpp.o CMakeFiles/kallisto_core.dir/MinCollector.cpp.o CMakeFiles/kallisto_core.dir/PlaintextWriter.cpp.o CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o CMakeFiles/kallisto_core.dir/PseudoBam.cpp.o CMakeFiles/kallisto_core.dir/common.cpp.o CMakeFiles/kallisto_core.dir/h5utils.cpp.o CMakeFiles/kallisto_core.dir/hash.cpp.o CMakeFiles/kallisto_core.dir/main.cpp.o CMakeFiles/kallisto_core.dir/weights.cpp.o /usr/bin/ranlib libkallisto_core.a make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' [ 90%] Built target kallisto_core make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/depend make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' cd 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Scanning dependencies of target kallisto make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/build make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' [ 95%] Building CXX object src/CMakeFiles/kallisto.dir/main.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto.dir/main.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/main.cpp [100%] Linking CXX executable kallisto cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kallisto.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/kallisto.dir/main.cpp.o -o kallisto libkallisto_core.a -lpthread -lhts libkallisto_core.a -lz -lrt make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' [100%] Built target kallisto make[2]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/<>/kallisto-0.46.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<>/kallisto-0.46.2+dfsg -B/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/depend make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.46.2+dfsg /<>/kallisto-0.46.2+dfsg/src /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/kallisto_core.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/build make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/kallisto_core.dir/build'. make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' [ 90%] Built target kallisto_core make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/depend make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' cd /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.46.2+dfsg /<>/kallisto-0.46.2+dfsg/src /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/kallisto.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/build make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/kallisto.dir/build'. make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' [100%] Built target kallisto make[2]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/kallisto-0.46.2+dfsg/debian/tmp/usr/bin/kallisto make[1]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-x86_64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip 8c92c427c705b9492846bf518893b6b44bc43f1d dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 147 INFO: pkgstriptranslations version 147 INFO: pkgstriptranslations version 147 pkgstriptranslations: processing kallisto (in debian/kallisto); do_strip: , oemstrip: pkgstriptranslations: processing kallisto-examples (in debian/kallisto-examples); do_strip: , oemstrip: pkgstriptranslations: processing kallisto-dbgsym (in debian/.debhelper/kallisto/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/kallisto/DEBIAN/control, package kallisto, directory debian/kallisto pkgstripfiles: processing control file: debian/.debhelper/kallisto/dbgsym-root/DEBIAN/control, package kallisto-dbgsym, directory debian/.debhelper/kallisto/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package kallisto ... dpkg-deb: building package 'kallisto-dbgsym' in 'debian/.debhelper/scratch-space/build-kallisto/kallisto-dbgsym_0.46.2+dfsg-3_amd64.deb'. pkgstripfiles: No PNG files. dpkg-deb: building package 'kallisto' in '../kallisto_0.46.2+dfsg-3_amd64.deb'. Renaming kallisto-dbgsym_0.46.2+dfsg-3_amd64.deb to kallisto-dbgsym_0.46.2+dfsg-3_amd64.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/kallisto-examples/DEBIAN/control, package kallisto-examples, directory debian/kallisto-examples pkgstripfiles: Running PNG optimization (using 4 cpus) for package kallisto-examples ... pkgstripfiles: No PNG files. dpkg-deb: building package 'kallisto-examples' in '../kallisto-examples_0.46.2+dfsg-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../kallisto_0.46.2+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-04-29T12:14:16Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kallisto_0.46.2+dfsg-3_amd64.changes: ------------------------------------- Format: 1.8 Date: Thu, 04 Mar 2021 23:54:34 +0530 Source: kallisto Binary: kallisto kallisto-examples Built-For-Profiles: noudeb Architecture: amd64 all Version: 0.46.2+dfsg-3 Distribution: impish-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Nilesh Patra Description: kallisto - near-optimal RNA-Seq quantification kallisto-examples - near-optimal RNA-Seq quantification (example data) Closes: 984073 Changes: kallisto (0.46.2+dfsg-3) unstable; urgency=medium . * Team Upload. * debian/patches/gcc11.patch: Fix gcc-11 FTBFS (Closes: 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03de29713b16b0f6de2b8f15c68c943abc75be3d 223224 kallisto_0.46.2+dfsg-3_amd64.deb Checksums-Sha256: 94f45d49055db26ec43af06907dfc92cb47c7b6f4198ca85388851efc64294b8 3293364 kallisto-dbgsym_0.46.2+dfsg-3_amd64.ddeb 9ad5141dc6c91166cdf64c4e575f17529669b48d71b68e047650994e79d595b9 667108 kallisto-examples_0.46.2+dfsg-3_all.deb 868d983d6ef3bb932ee5d3b51db011cd50744822722af864e326094661aa2bae 223224 kallisto_0.46.2+dfsg-3_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Thu, 29 Apr 2021 12:14:15 +0000 Build-Path: /<>/kallisto-0.46.2+dfsg Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-14), automake (= 1:1.16.3-2ubuntu1), autopoint (= 0.21-3ubuntu2), autotools-dev (= 20180224.1+nmu1), base-files (= 11.1ubuntu2), base-passwd (= 3.5.49), bash (= 5.1-2ubuntu1), binutils (= 2.36.1-6ubuntu1), binutils-common (= 2.36.1-6ubuntu1), binutils-x86-64-linux-gnu (= 2.36.1-6ubuntu1), bsdextrautils (= 2.36.1-7ubuntu2), bsdutils (= 1:2.36.1-7ubuntu2), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu3), cmake (= 3.18.4-2ubuntu1), cmake-data (= 3.18.4-2ubuntu1), coreutils (= 8.32-4ubuntu2), cpp (= 4:10.3.0-1ubuntu3), cpp-10 (= 10.3.0-2ubuntu1), dash (= 0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1), debconf (= 1.5.74), debhelper (= 13.3.4ubuntu1), debianutils (= 4.11.2), debugedit (= 1:0.1-0ubuntu2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.11.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.9ubuntu1), dpkg-dev (= 1.20.9ubuntu1), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1ubuntu1), g++ (= 4:10.3.0-1ubuntu3), g++-10 (= 10.3.0-2ubuntu1), gcc (= 4:10.3.0-1ubuntu3), gcc-10 (= 10.3.0-2ubuntu1), gcc-10-base (= 10.3.0-2ubuntu1), gcc-11-base (= 11.1.0-1ubuntu1), gettext (= 0.21-3ubuntu2), gettext-base (= 0.21-3ubuntu2), grep (= 3.6-1), groff-base (= 1.22.4-6), gzip (= 1.10-2ubuntu3), hdf5-helpers (= 1.10.6+repack-2), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu1), libaec-dev (= 1.0.4-1), libaec0 (= 1.0.4-1), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.4.3-2), libasan6 (= 11.1.0-1ubuntu1), libasn1-8-heimdal (= 7.7.0+dfsg-2), libatomic1 (= 11.1.0-1ubuntu1), libattr1 (= 1:2.4.48-6build1), libaudit-common (= 1:3.0-2ubuntu1), libaudit1 (= 1:3.0-2ubuntu1), libbinutils (= 2.36.1-6ubuntu1), libblkid1 (= 2.36.1-7ubuntu2), libbrotli1 (= 1.0.9-2build2), libbz2-1.0 (= 1.0.8-4ubuntu3), libc-bin (= 2.33-0ubuntu6), libc-dev-bin (= 2.33-0ubuntu6), libc6 (= 2.33-0ubuntu6), libc6-dev (= 2.33-0ubuntu6), libcap-ng0 (= 0.7.9-2.2build1), libcap2 (= 1:2.44-1build1), libcc1-0 (= 11.1.0-1ubuntu1), libcom-err2 (= 1.45.7-1ubuntu2), libcrypt-dev (= 1:4.4.17-1ubuntu3), libcrypt1 (= 1:4.4.17-1ubuntu3), libctf-nobfd0 (= 2.36.1-6ubuntu1), libctf0 (= 2.36.1-6ubuntu1), libcurl3-gnutls (= 7.74.0-1ubuntu2), libcurl4 (= 7.74.0-1ubuntu2), libcurl4-gnutls-dev (= 7.74.0-1ubuntu2), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu4), libdebconfclient0 (= 0.256ubuntu3), libdebhelper-perl (= 13.3.4ubuntu1), libdeflate-dev (= 1.7-1ubuntu1), libdeflate0 (= 1.7-1ubuntu1), libdpkg-perl (= 1.20.9ubuntu1), libdw1 (= 0.183-8), libelf1 (= 0.183-8), libexpat1 (= 2.2.10-2), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu5), libfile-stripnondeterminism-perl (= 1.11.0-1), libgcc-10-dev (= 10.3.0-2ubuntu1), libgcc-s1 (= 11.1.0-1ubuntu1), libgcrypt20 (= 1.8.7-2ubuntu2), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libgfortran5 (= 11.1.0-1ubuntu1), libgmp10 (= 2:6.2.1+dfsg-1ubuntu2), libgnutls30 (= 3.7.1-3ubuntu1), libgomp1 (= 11.1.0-1ubuntu1), libgpg-error0 (= 1.38-2build1), libgssapi-krb5-2 (= 1.18.3-4), libgssapi3-heimdal (= 7.7.0+dfsg-2), libhcrypto4-heimdal (= 7.7.0+dfsg-2), libhdf5-103-1 (= 1.10.6+repack-2), libhdf5-cpp-103-1 (= 1.10.6+repack-2), libhdf5-dev (= 1.10.6+repack-2), libhdf5-fortran-102 (= 1.10.6+repack-2), libhdf5-hl-100 (= 1.10.6+repack-2), libhdf5-hl-cpp-100 (= 1.10.6+repack-2), libhdf5-hl-fortran-100 (= 1.10.6+repack-2), libheimbase1-heimdal (= 7.7.0+dfsg-2), libheimntlm0-heimdal (= 7.7.0+dfsg-2), libhogweed6 (= 3.7-2.1ubuntu1), libhts-dev (= 1.11-4), libhts3 (= 1.11-4), libhx509-5-heimdal (= 7.7.0+dfsg-2), libicu67 (= 67.1-6ubuntu2), libidn2-0 (= 2.3.0-5), libisl23 (= 0.23-1build1), libitm1 (= 11.1.0-1ubuntu1), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.0.6-0ubuntu2), libjpeg-turbo8-dev (= 2.0.6-0ubuntu2), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libjsoncpp24 (= 1.9.4-4), libk5crypto3 (= 1.18.3-4), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-26-heimdal (= 7.7.0+dfsg-2), libkrb5-3 (= 1.18.3-4), libkrb5support0 (= 1.18.3-4), libldap-2.4-2 (= 2.4.57+dfsg-2ubuntu1), liblsan0 (= 11.1.0-1ubuntu1), liblz4-1 (= 1.9.3-1build1), liblzma-dev (= 5.2.5-1.0build2), liblzma5 (= 5.2.5-1.0build2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.36.1-7ubuntu2), libmpc3 (= 1.2.0-1build1), libmpfr6 (= 4.1.0-3build1), libncurses6 (= 6.2+20201114-2build1), libncursesw6 (= 6.2+20201114-2build1), libnettle8 (= 3.7-2.1ubuntu1), libnghttp2-14 (= 1.43.0-1), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libp11-kit0 (= 0.23.22-1), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpcre2-8-0 (= 10.36-2ubuntu5), libpcre3 (= 2:8.39-13build3), libperl5.32 (= 5.32.1-3ubuntu2), libpipeline1 (= 1.5.3-1), libprocps8 (= 2:3.3.16-5ubuntu3), libpsl5 (= 0.21.0-1.2), libquadmath0 (= 11.1.0-1ubuntu1), librhash0 (= 1.4.1-1), libroken18-heimdal (= 7.7.0+dfsg-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build2), libsasl2-2 (= 2.1.27+dfsg-2ubuntu1), libsasl2-modules-db (= 2.1.27+dfsg-2ubuntu1), libseccomp2 (= 2.5.1-1ubuntu1), libselinux1 (= 3.1-3build1), libsigsegv2 (= 2.13-1ubuntu1), libsmartcols1 (= 2.36.1-7ubuntu2), libsqlite3-0 (= 3.34.1-3), libssh-4 (= 0.9.5-1), libssl1.1 (= 1.1.1j-1ubuntu3), libstdc++-10-dev (= 10.3.0-2ubuntu1), libstdc++6 (= 11.1.0-1ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.3-3ubuntu3), libsz2 (= 1.0.4-1), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20201114-2build1), libtirpc-common (= 1.3.1-1build1), libtirpc-dev (= 1.3.1-1build1), libtirpc3 (= 1.3.1-1build1), libtool (= 2.4.6-15), libtsan0 (= 11.1.0-1ubuntu1), libubsan1 (= 11.1.0-1ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 247.3-3ubuntu3), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-7ubuntu2), libuv1 (= 1.40.0-1), libwind0-heimdal (= 7.7.0+dfsg-2), libxml2 (= 2.9.10+dfsg-6.3build2), libzstd1 (= 1.4.8+dfsg-2.1), linux-libc-dev (= 5.11.0-16.17), login (= 1:4.8.1-1ubuntu8), lsb-base (= 11.1.0ubuntu2), lto-disabled-list (= 7), m4 (= 1.4.18-5), make (= 4.3-4ubuntu1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-2build1), ncurses-bin (= 6.2+20201114-2build1), patch (= 2.7.6-7), perl (= 5.32.1-3ubuntu2), perl-base (= 5.32.1-3ubuntu2), perl-modules-5.32 (= 5.32.1-3ubuntu2), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.16-5ubuntu3), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-7ubuntu1), tar (= 1.34+dfsg-1build1), util-linux (= 2.36.1-7ubuntu2), xz-utils (= 5.2.5-1.0build2), zlib1g (= 1:1.2.11.dfsg-2ubuntu6), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu6) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1614882274" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kallisto-examples_0.46.2+dfsg-3_all.deb --------------------------------------- new Debian package, version 2.0. size 667108 bytes: control archive=1412 bytes. 1442 bytes, 29 lines control 944 bytes, 12 lines md5sums Package: kallisto-examples Source: kallisto Version: 0.46.2+dfsg-3 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 871 Recommends: kallisto Suggests: snakemake Section: science Priority: optional Multi-Arch: foreign Homepage: https://pachterlab.github.io/kallisto Description: near-optimal RNA-Seq quantification (example data) Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools. . This package contains usage examples which are used in autopkgtest. drwxr-xr-x root/root 0 2021-03-04 18:24 ./ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/share/ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/share/doc/kallisto-examples/ -rw-r--r-- root/root 754 2021-03-04 18:24 ./usr/share/doc/kallisto-examples/changelog.Debian.gz -rw-r--r-- root/root 2910 2021-03-04 16:50 ./usr/share/doc/kallisto-examples/copyright -rw-r--r-- root/root 1347 2021-03-04 16:50 ./usr/share/doc/kallisto-examples/run-unit-test drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/share/doc/kallisto/ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/share/doc/kallisto/test/ -rw-r--r-- root/root 380 2020-02-16 22:27 ./usr/share/doc/kallisto/test/README.md -rw-r--r-- root/root 1198 2020-02-16 22:27 ./usr/share/doc/kallisto/test/Snakefile -rw-r--r-- root/root 301 2020-02-16 22:27 ./usr/share/doc/kallisto/test/chrom.txt -rw-r--r-- root/root 209954 2021-03-04 18:24 ./usr/share/doc/kallisto/test/reads_1.fastq.gz -rw-r--r-- root/root 210485 2021-03-04 18:24 ./usr/share/doc/kallisto/test/reads_2.fastq.gz -rw-r--r-- root/root 227963 2021-03-04 18:24 ./usr/share/doc/kallisto/test/sc_reads_1.fastq.gz -rw-r--r-- root/root 210485 2021-03-04 18:24 ./usr/share/doc/kallisto/test/sc_reads_2.fastq.gz -rw-r--r-- root/root 7084 2021-03-04 18:24 ./usr/share/doc/kallisto/test/transcripts.fasta.gz -rw-r--r-- root/root 4411 2021-03-04 18:24 ./usr/share/doc/kallisto/test/transcripts.gtf.gz kallisto_0.46.2+dfsg-3_amd64.deb -------------------------------- new Debian package, version 2.0. size 223224 bytes: control archive=1164 bytes. 1376 bytes, 24 lines control 264 bytes, 4 lines md5sums Package: kallisto Version: 0.46.2+dfsg-3 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 622 Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.3.1), libhts3 (>= 1.10), libstdc++6 (>= 6), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://pachterlab.github.io/kallisto Description: near-optimal RNA-Seq quantification Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools. drwxr-xr-x root/root 0 2021-03-04 18:24 ./ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/bin/ -rwxr-xr-x root/root 624328 2021-03-04 18:24 ./usr/bin/kallisto drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/share/ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/share/doc/kallisto/ -rw-r--r-- root/root 323 2021-03-04 16:50 ./usr/share/doc/kallisto/README.test -rw-r--r-- root/root 754 2021-03-04 18:24 ./usr/share/doc/kallisto/changelog.Debian.gz -rw-r--r-- root/root 2910 2021-03-04 16:50 ./usr/share/doc/kallisto/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: n/a Build-Time: 90 Distribution: impish-proposed Host Architecture: amd64 Install-Time: 16 Job: kallisto_0.46.2+dfsg-3.dsc Machine Architecture: amd64 Package: kallisto Package-Time: 108 Source-Version: 0.46.2+dfsg-3 Space: n/a Status: successful Version: 0.46.2+dfsg-3 -------------------------------------------------------------------------------- Finished at 2021-04-29T12:14:16Z Build needed 00:01:48, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-21475498 Scanning for processes to kill in build PACKAGEBUILD-21475498