https://launchpad.net/ubuntu/+source/kallisto/0.46.2+dfsg-3/+build/21475499 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-052 4.15.0-142-generic #146-Ubuntu SMP Tue Apr 13 01:08:49 UTC 2021 aarch64 Buildd toolchain package versions: launchpad-buildd_195~480~ubuntu18.04.1 python3-lpbuildd_195~480~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.8 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 29 Apr 12:39:13 ntpdate[1681]: adjust time server 10.211.37.1 offset -0.004334 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=impish --arch=arm64 PACKAGEBUILD-21475499 --image-type chroot /home/buildd/filecache-default/13acc7b09d4f3167554ebdf110d3864ddc7cf889 Creating target for build PACKAGEBUILD-21475499 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=impish --arch=arm64 PACKAGEBUILD-21475499 Starting target for build PACKAGEBUILD-21475499 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=impish --arch=arm64 PACKAGEBUILD-21475499 'deb http://ftpmaster.internal/ubuntu impish main universe' 'deb http://ftpmaster.internal/ubuntu impish-security main universe' 'deb http://ftpmaster.internal/ubuntu impish-updates main universe' 'deb http://ftpmaster.internal/ubuntu impish-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-21475499 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=impish --arch=arm64 PACKAGEBUILD-21475499 Updating target for build PACKAGEBUILD-21475499 Get:1 http://ftpmaster.internal/ubuntu impish InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu impish-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu impish-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu impish-proposed InRelease [115 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main arm64 Packages [1368 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu impish/universe arm64 Packages [13.0 MB] Get:8 http://ftpmaster.internal/ubuntu impish/universe Translation-en [5441 kB] Get:9 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 Packages [57.6 kB] Get:10 http://ftpmaster.internal/ubuntu impish-proposed/main Translation-en [17.4 kB] Get:11 http://ftpmaster.internal/ubuntu impish-proposed/universe arm64 Packages [286 kB] Get:12 http://ftpmaster.internal/ubuntu impish-proposed/universe Translation-en [98.9 kB] Fetched 21.3 MB in 5s (4351 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files cpp cpp-10 dpkg dpkg-dev g++ g++-10 gcc gcc-10 gcc-10-base gcc-11-base libapt-pkg6.0 libasan6 libatomic1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libdpkg-perl libgcc-10-dev libgcc-s1 libgomp1 libitm1 liblsan0 libstdc++-10-dev libstdc++6 libtsan0 libubsan1 libzstd1 linux-libc-dev sysvinit-utils 33 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 52.0 MB of archives. After this operation, 6118 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libc6-dev arm64 2.33-0ubuntu6 [1720 kB] Get:2 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libc-dev-bin arm64 2.33-0ubuntu6 [18.2 kB] Get:3 http://ftpmaster.internal/ubuntu impish/main arm64 linux-libc-dev arm64 5.11.0-16.17 [1181 kB] Get:4 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libasan6 arm64 11.1.0-1ubuntu1 [1976 kB] Get:5 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libubsan1 arm64 11.1.0-1ubuntu1 [817 kB] Get:6 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libtsan0 arm64 11.1.0-1ubuntu1 [1973 kB] Get:7 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 liblsan0 arm64 11.1.0-1ubuntu1 [850 kB] Get:8 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libitm1 arm64 11.1.0-1ubuntu1 [24.2 kB] Get:9 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libgomp1 arm64 11.1.0-1ubuntu1 [98.4 kB] Get:10 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 gcc-11-base arm64 11.1.0-1ubuntu1 [18.8 kB] Get:11 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libgcc-s1 arm64 11.1.0-1ubuntu1 [34.4 kB] Get:12 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libcc1-0 arm64 11.1.0-1ubuntu1 [46.4 kB] Get:13 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libatomic1 arm64 11.1.0-1ubuntu1 [9844 B] Get:14 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libstdc++6 arm64 11.1.0-1ubuntu1 [534 kB] Get:15 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libc6 arm64 2.33-0ubuntu6 [2264 kB] Get:16 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 base-files arm64 11.1ubuntu2 [61.0 kB] Get:17 http://ftpmaster.internal/ubuntu impish/main arm64 dpkg arm64 1.20.9ubuntu1 [1248 kB] Get:18 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libc-bin arm64 2.33-0ubuntu6 [523 kB] Get:19 http://ftpmaster.internal/ubuntu impish/main arm64 sysvinit-utils arm64 2.96-7ubuntu1 [19.7 kB] Get:20 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libzstd1 arm64 1.4.8+dfsg-2.1 [265 kB] Get:21 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libapt-pkg6.0 arm64 2.3.2 [737 kB] Get:22 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 apt arm64 2.3.2 [1250 kB] Get:23 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 g++-10 arm64 10.3.0-2ubuntu1 [8927 kB] Get:24 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 gcc-10 arm64 10.3.0-2ubuntu1 [15.8 MB] Get:25 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 cpp-10 arm64 10.3.0-2ubuntu1 [7785 kB] Get:26 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libstdc++-10-dev arm64 10.3.0-2ubuntu1 [1725 kB] Get:27 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libgcc-10-dev arm64 10.3.0-2ubuntu1 [911 kB] Get:28 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 gcc-10-base arm64 10.3.0-2ubuntu1 [20.4 kB] Get:29 http://ftpmaster.internal/ubuntu impish/main arm64 g++ arm64 4:10.3.0-1ubuntu3 [1592 B] Get:30 http://ftpmaster.internal/ubuntu impish/main arm64 gcc arm64 4:10.3.0-1ubuntu3 [5236 B] Get:31 http://ftpmaster.internal/ubuntu impish/main arm64 cpp arm64 4:10.3.0-1ubuntu3 [27.7 kB] Get:32 http://ftpmaster.internal/ubuntu impish/main arm64 dpkg-dev all 1.20.9ubuntu1 [937 kB] Get:33 http://ftpmaster.internal/ubuntu impish/main arm64 libdpkg-perl all 1.20.9ubuntu1 [232 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 52.0 MB in 5s (10.4 MB/s) (Reading database ... 13119 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.33-0ubuntu6_arm64.deb ... Unpacking libc6-dev:arm64 (2.33-0ubuntu6) over (2.33-0ubuntu5) ... Preparing to unpack .../1-libc-dev-bin_2.33-0ubuntu6_arm64.deb ... Unpacking libc-dev-bin (2.33-0ubuntu6) over (2.33-0ubuntu5) ... Preparing to unpack .../2-linux-libc-dev_5.11.0-16.17_arm64.deb ... Unpacking linux-libc-dev:arm64 (5.11.0-16.17) over (5.11.0-14.15) ... Preparing to unpack .../3-libasan6_11.1.0-1ubuntu1_arm64.deb ... Unpacking libasan6:arm64 (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../4-libubsan1_11.1.0-1ubuntu1_arm64.deb ... Unpacking libubsan1:arm64 (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../5-libtsan0_11.1.0-1ubuntu1_arm64.deb ... Unpacking libtsan0:arm64 (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../6-liblsan0_11.1.0-1ubuntu1_arm64.deb ... Unpacking liblsan0:arm64 (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... 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Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Updating /etc/profile to current default. (Reading database ... 13119 files and directories currently installed.) Preparing to unpack .../dpkg_1.20.9ubuntu1_arm64.deb ... Unpacking dpkg (1.20.9ubuntu1) over (1.20.7.1ubuntu4) ... Setting up dpkg (1.20.9ubuntu1) ... (Reading database ... 13124 files and directories currently installed.) Preparing to unpack .../libc-bin_2.33-0ubuntu6_arm64.deb ... Unpacking libc-bin (2.33-0ubuntu6) over (2.33-0ubuntu5) ... Setting up libc-bin (2.33-0ubuntu6) ... (Reading database ... 13124 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-7ubuntu1_arm64.deb ... Unpacking sysvinit-utils (2.96-7ubuntu1) over (2.96-6ubuntu1) ... Setting up sysvinit-utils (2.96-7ubuntu1) ... (Reading database ... 13124 files and directories currently installed.) Preparing to unpack .../libzstd1_1.4.8+dfsg-2.1_arm64.deb ... 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Preparing to unpack .../10-libdpkg-perl_1.20.9ubuntu1_all.deb ... Unpacking libdpkg-perl (1.20.9ubuntu1) over (1.20.7.1ubuntu4) ... Setting up linux-libc-dev:arm64 (5.11.0-16.17) ... Setting up libgomp1:arm64 (11.1.0-1ubuntu1) ... Setting up libasan6:arm64 (11.1.0-1ubuntu1) ... Setting up gcc-10-base:arm64 (10.3.0-2ubuntu1) ... Setting up libatomic1:arm64 (11.1.0-1ubuntu1) ... Setting up libdpkg-perl (1.20.9ubuntu1) ... Setting up libubsan1:arm64 (11.1.0-1ubuntu1) ... Setting up libc-dev-bin (2.33-0ubuntu6) ... Setting up libcc1-0:arm64 (11.1.0-1ubuntu1) ... Setting up liblsan0:arm64 (11.1.0-1ubuntu1) ... Setting up cpp-10 (10.3.0-2ubuntu1) ... Setting up libitm1:arm64 (11.1.0-1ubuntu1) ... Setting up libtsan0:arm64 (11.1.0-1ubuntu1) ... Setting up libgcc-10-dev:arm64 (10.3.0-2ubuntu1) ... Setting up dpkg-dev (1.20.9ubuntu1) ... Setting up gcc-10 (10.3.0-2ubuntu1) ... Setting up cpp (4:10.3.0-1ubuntu3) ... Setting up libc6-dev:arm64 (2.33-0ubuntu6) ... Setting up libstdc++-10-dev:arm64 (10.3.0-2ubuntu1) ... Setting up g++-10 (10.3.0-2ubuntu1) ... Setting up gcc (4:10.3.0-1ubuntu3) ... Setting up g++ (4:10.3.0-1ubuntu3) ... Processing triggers for libc-bin (2.33-0ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-21475499 arm64 impish-proposed -c chroot:build-PACKAGEBUILD-21475499 --arch=arm64 --dist=impish-proposed --nolog kallisto_0.46.2+dfsg-3.dsc Initiating build PACKAGEBUILD-21475499 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-142-generic #146-Ubuntu SMP Tue Apr 13 01:08:49 UTC 2021 aarch64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-052.buildd +==============================================================================+ | kallisto 0.46.2+dfsg-3 (arm64) Thu, 29 Apr 2021 12:39:53 +0000 | +==============================================================================+ Package: kallisto Version: 0.46.2+dfsg-3 Source Version: 0.46.2+dfsg-3 Distribution: impish-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-21475499/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- kallisto_0.46.2+dfsg-3.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/kallisto-WXhlsv/kallisto-0.46.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/kallisto-WXhlsv' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-hYhnuR/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-hYhnuR/apt_archive ./ InRelease Get:2 copy:/<>/resolver-hYhnuR/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-hYhnuR/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-hYhnuR/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-hYhnuR/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (47.8 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-hYhnuR/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (72.9 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13126 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), cmake, libhdf5-dev, libhts-dev Filtered Build-Depends: debhelper-compat (= 12), cmake, libhdf5-dev, libhts-dev dpkg-deb: building package 'sbuild-build-depends-kallisto-dummy' in '/<>/resolver-hYhnuR/apt_archive/sbuild-build-depends-kallisto-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-kallisto-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-hYhnuR/apt_archive ./ InRelease Get:2 copy:/<>/resolver-hYhnuR/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-hYhnuR/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-hYhnuR/apt_archive ./ Sources [508 B] Get:5 copy:/<>/resolver-hYhnuR/apt_archive ./ Packages [590 B] Fetched 2061 B in 0s (60.8 kB/s) Reading package lists... Reading package lists... Install kallisto build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libasn1-8-heimdal libbrotli1 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libgssapi3-heimdal libhcrypto4-heimdal libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts3 libhx509-5-heimdal libicu67 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp24 libkrb5-26-heimdal libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libsz2 libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config libhdf5-doc liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libasn1-8-heimdal libbrotli1 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libgssapi3-heimdal libhcrypto4-heimdal libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts3 libhx509-5-heimdal libicu67 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp24 libkrb5-26-heimdal libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libsz2 libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf sbuild-build-depends-kallisto-dummy zlib1g-dev 0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded. Need to get 33.1 MB of archives. After this operation, 133 MB of additional disk space will be used. Get:1 copy:/<>/resolver-hYhnuR/apt_archive ./ sbuild-build-depends-kallisto-dummy 0.invalid.0 [880 B] Get:2 http://ftpmaster.internal/ubuntu impish/main arm64 bsdextrautils arm64 2.36.1-7ubuntu2 [77.7 kB] Get:3 http://ftpmaster.internal/ubuntu impish/main arm64 libuchardet0 arm64 0.0.7-1 [68.0 kB] Get:4 http://ftpmaster.internal/ubuntu impish/main arm64 groff-base arm64 1.22.4-6 [809 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main arm64 libpipeline1 arm64 1.5.3-1 [26.1 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main arm64 man-db arm64 2.9.4-2 [1136 kB] Get:7 http://ftpmaster.internal/ubuntu impish/main arm64 libelf1 arm64 0.183-8 [45.1 kB] Get:8 http://ftpmaster.internal/ubuntu impish/main arm64 libexpat1 arm64 2.2.10-2 [61.5 kB] Get:9 http://ftpmaster.internal/ubuntu impish/main arm64 libicu67 arm64 67.1-6ubuntu2 [8456 kB] Get:10 http://ftpmaster.internal/ubuntu impish/main arm64 libxml2 arm64 2.9.10+dfsg-6.3build2 [618 kB] Get:11 http://ftpmaster.internal/ubuntu impish/main arm64 libmagic-mgc arm64 1:5.39-3 [228 kB] Get:12 http://ftpmaster.internal/ubuntu impish/main arm64 libmagic1 arm64 1:5.39-3 [75.1 kB] Get:13 http://ftpmaster.internal/ubuntu impish/main arm64 file arm64 1:5.39-3 [23.6 kB] Get:14 http://ftpmaster.internal/ubuntu impish/main arm64 gettext-base arm64 0.21-3ubuntu2 [38.6 kB] Get:15 http://ftpmaster.internal/ubuntu impish/main arm64 libpsl5 arm64 0.21.0-1.2 [53.2 kB] Get:16 http://ftpmaster.internal/ubuntu impish/main arm64 libuv1 arm64 1.40.0-1 [75.4 kB] Get:17 http://ftpmaster.internal/ubuntu impish/main arm64 libsigsegv2 arm64 2.13-1ubuntu1 [14.0 kB] Get:18 http://ftpmaster.internal/ubuntu impish/main arm64 m4 arm64 1.4.18-5 [194 kB] Get:19 http://ftpmaster.internal/ubuntu impish/main arm64 autoconf all 2.69-14 [293 kB] Get:20 http://ftpmaster.internal/ubuntu impish/main arm64 autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:21 http://ftpmaster.internal/ubuntu impish/main arm64 automake all 1:1.16.3-2ubuntu1 [552 kB] Get:22 http://ftpmaster.internal/ubuntu impish/main arm64 autopoint all 0.21-3ubuntu2 [422 kB] Get:23 http://ftpmaster.internal/ubuntu impish/main arm64 cmake-data all 3.18.4-2ubuntu1 [1705 kB] Get:24 http://ftpmaster.internal/ubuntu impish/main arm64 libarchive13 arm64 3.4.3-2 [311 kB] Get:25 http://ftpmaster.internal/ubuntu impish/main arm64 libbrotli1 arm64 1.0.9-2build2 [262 kB] Get:26 http://ftpmaster.internal/ubuntu impish/main arm64 libroken18-heimdal arm64 7.7.0+dfsg-2 [39.4 kB] Get:27 http://ftpmaster.internal/ubuntu impish/main arm64 libasn1-8-heimdal arm64 7.7.0+dfsg-2 [150 kB] Get:28 http://ftpmaster.internal/ubuntu impish/main arm64 libheimbase1-heimdal arm64 7.7.0+dfsg-2 [27.9 kB] Get:29 http://ftpmaster.internal/ubuntu impish/main arm64 libhcrypto4-heimdal arm64 7.7.0+dfsg-2 [84.8 kB] Get:30 http://ftpmaster.internal/ubuntu impish/main arm64 libwind0-heimdal arm64 7.7.0+dfsg-2 [47.2 kB] Get:31 http://ftpmaster.internal/ubuntu impish/main arm64 libhx509-5-heimdal arm64 7.7.0+dfsg-2 [98.6 kB] Get:32 http://ftpmaster.internal/ubuntu impish/main arm64 libkrb5-26-heimdal arm64 7.7.0+dfsg-2 [192 kB] Get:33 http://ftpmaster.internal/ubuntu impish/main arm64 libheimntlm0-heimdal arm64 7.7.0+dfsg-2 [14.8 kB] Get:34 http://ftpmaster.internal/ubuntu impish/main arm64 libgssapi3-heimdal arm64 7.7.0+dfsg-2 [88.4 kB] Get:35 http://ftpmaster.internal/ubuntu impish/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2ubuntu1 [14.9 kB] Get:36 http://ftpmaster.internal/ubuntu impish/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2ubuntu1 [48.4 kB] Get:37 http://ftpmaster.internal/ubuntu impish/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-2ubuntu1 [146 kB] Get:38 http://ftpmaster.internal/ubuntu impish/main arm64 libnghttp2-14 arm64 1.43.0-1 [68.5 kB] Get:39 http://ftpmaster.internal/ubuntu impish/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2build2 [53.1 kB] Get:40 http://ftpmaster.internal/ubuntu impish/main arm64 libssh-4 arm64 0.9.5-1 [160 kB] Get:41 http://ftpmaster.internal/ubuntu impish/main arm64 libcurl4 arm64 7.74.0-1ubuntu2 [231 kB] Get:42 http://ftpmaster.internal/ubuntu impish/main arm64 libjsoncpp24 arm64 1.9.4-4 [69.1 kB] Get:43 http://ftpmaster.internal/ubuntu impish/main arm64 librhash0 arm64 1.4.1-1 [116 kB] Get:44 http://ftpmaster.internal/ubuntu impish/main arm64 cmake arm64 3.18.4-2ubuntu1 [3660 kB] Get:45 http://ftpmaster.internal/ubuntu impish/main arm64 libdebhelper-perl all 13.3.4ubuntu1 [61.1 kB] Get:46 http://ftpmaster.internal/ubuntu impish/main arm64 libtool all 2.4.6-15 [161 kB] Get:47 http://ftpmaster.internal/ubuntu impish/main arm64 dh-autoreconf all 20 [16.1 kB] Get:48 http://ftpmaster.internal/ubuntu impish/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:49 http://ftpmaster.internal/ubuntu impish/main arm64 libsub-override-perl all 0.09-2 [9532 B] Get:50 http://ftpmaster.internal/ubuntu impish/main arm64 libfile-stripnondeterminism-perl all 1.11.0-1 [17.0 kB] Get:51 http://ftpmaster.internal/ubuntu impish/main arm64 dh-strip-nondeterminism all 1.11.0-1 [5236 B] Get:52 http://ftpmaster.internal/ubuntu impish/main arm64 libdw1 arm64 0.183-8 [207 kB] Get:53 http://ftpmaster.internal/ubuntu impish/main arm64 debugedit arm64 1:0.1-0ubuntu2 [37.2 kB] Get:54 http://ftpmaster.internal/ubuntu impish/main arm64 dwz arm64 0.14-1 [89.4 kB] Get:55 http://ftpmaster.internal/ubuntu impish/main arm64 gettext arm64 0.21-3ubuntu2 [775 kB] Get:56 http://ftpmaster.internal/ubuntu impish/main arm64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:57 http://ftpmaster.internal/ubuntu impish/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] Get:58 http://ftpmaster.internal/ubuntu impish/main arm64 debhelper all 13.3.4ubuntu1 [920 kB] Get:59 http://ftpmaster.internal/ubuntu impish/universe arm64 hdf5-helpers arm64 1.10.6+repack-2 [13.7 kB] Get:60 http://ftpmaster.internal/ubuntu impish/universe arm64 libaec0 arm64 1.0.4-1 [18.7 kB] Get:61 http://ftpmaster.internal/ubuntu impish/main arm64 libcurl3-gnutls arm64 7.74.0-1ubuntu2 [228 kB] Get:62 http://ftpmaster.internal/ubuntu impish/main arm64 libcurl4-gnutls-dev arm64 7.74.0-1ubuntu2 [321 kB] Get:63 http://ftpmaster.internal/ubuntu impish/main arm64 libdeflate0 arm64 1.7-1ubuntu1 [47.4 kB] Get:64 http://ftpmaster.internal/ubuntu impish/main arm64 libdeflate-dev arm64 1.7-1ubuntu1 [43.1 kB] Get:65 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libgfortran5 arm64 11.1.0-1ubuntu1 [347 kB] Get:66 http://ftpmaster.internal/ubuntu impish/universe arm64 libsz2 arm64 1.0.4-1 [5100 B] Get:67 http://ftpmaster.internal/ubuntu impish/universe arm64 libhdf5-103-1 arm64 1.10.6+repack-2 [1002 kB] Get:68 http://ftpmaster.internal/ubuntu impish/universe arm64 libhdf5-cpp-103-1 arm64 1.10.6+repack-2 [106 kB] Get:69 http://ftpmaster.internal/ubuntu impish/universe arm64 libhdf5-fortran-102 arm64 1.10.6+repack-2 [72.3 kB] Get:70 http://ftpmaster.internal/ubuntu impish/universe arm64 libhdf5-hl-100 arm64 1.10.6+repack-2 [50.5 kB] Get:71 http://ftpmaster.internal/ubuntu impish/universe arm64 libhdf5-hl-fortran-100 arm64 1.10.6+repack-2 [26.0 kB] Get:72 http://ftpmaster.internal/ubuntu impish/universe arm64 libhdf5-hl-cpp-100 arm64 1.10.6+repack-2 [9812 B] Get:73 http://ftpmaster.internal/ubuntu impish/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2ubuntu6 [154 kB] Get:74 http://ftpmaster.internal/ubuntu impish/main arm64 libjpeg-turbo8 arm64 2.0.6-0ubuntu2 [99.9 kB] Get:75 http://ftpmaster.internal/ubuntu impish/main arm64 libjpeg-turbo8-dev arm64 2.0.6-0ubuntu2 [215 kB] Get:76 http://ftpmaster.internal/ubuntu impish/main arm64 libjpeg8 arm64 8c-2ubuntu8 [2198 B] Get:77 http://ftpmaster.internal/ubuntu impish/main arm64 libjpeg8-dev arm64 8c-2ubuntu8 [1550 B] Get:78 http://ftpmaster.internal/ubuntu impish/main arm64 libjpeg-dev arm64 8c-2ubuntu8 [1546 B] Get:79 http://ftpmaster.internal/ubuntu impish/universe arm64 libaec-dev arm64 1.0.4-1 [16.5 kB] Get:80 http://ftpmaster.internal/ubuntu impish/universe arm64 libhdf5-dev arm64 1.10.6+repack-2 [2523 kB] Get:81 http://ftpmaster.internal/ubuntu impish/universe arm64 libhts3 arm64 1.11-4 [320 kB] Get:82 http://ftpmaster.internal/ubuntu impish/main arm64 liblzma-dev arm64 5.2.5-1.0build2 [149 kB] Get:83 http://ftpmaster.internal/ubuntu impish/universe arm64 libhts-dev arm64 1.11-4 [3833 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 33.1 MB in 1s (42.0 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 13126 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7ubuntu2_arm64.deb ... Unpacking bsdextrautils (2.36.1-7ubuntu2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../05-libelf1_0.183-8_arm64.deb ... Unpacking libelf1:arm64 (0.183-8) ... 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Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4ubuntu1) ... Setting up libbrotli1:arm64 (1.0.9-2build2) ... Setting up libnghttp2-14:arm64 (1.43.0-1) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up libdeflate0:arm64 (1.7-1ubuntu1) ... Setting up gettext-base (0.21-3ubuntu2) ... Setting up file (1:5.39-3) ... Setting up libaec0:arm64 (1.0.4-1) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2ubuntu1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:arm64 (1.40.0-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2build2) ... Setting up libsigsegv2:arm64 (2.13-1ubuntu1) ... Setting up autopoint (0.21-3ubuntu2) ... Setting up libjpeg-turbo8:arm64 (2.0.6-0ubuntu2) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2ubuntu1) ... Setting up libssh-4:arm64 (0.9.5-1) ... Setting up libgfortran5:arm64 (11.1.0-1ubuntu1) ... Setting up libroken18-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libjsoncpp24:arm64 (1.9.4-4) ... Setting up liblzma-dev:arm64 (5.2.5-1.0build2) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2ubuntu6) ... Setting up librhash0:arm64 (1.4.1-1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up cmake-data (3.18.4-2ubuntu1) ... Setting up libdeflate-dev:arm64 (1.7-1ubuntu1) ... Setting up libelf1:arm64 (0.183-8) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.3build2) ... Setting up libsz2:arm64 (1.0.4-1) ... Setting up libheimbase1-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libjpeg8:arm64 (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up libdw1:arm64 (0.183-8) ... Setting up libjpeg-turbo8-dev:arm64 (2.0.6-0ubuntu2) ... Setting up gettext (0.21-3ubuntu2) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:arm64 (3.4.3-2) ... Setting up libasn1-8-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libaec-dev:arm64 (1.0.4-1) ... Setting up m4 (1.4.18-5) ... Setting up libhcrypto4-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libwind0-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up libhdf5-103-1:arm64 (1.10.6+repack-2) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-6) ... Setting up libhdf5-cpp-103-1:arm64 (1.10.6+repack-2) ... Setting up debugedit (1:0.1-0ubuntu2) ... Setting up libjpeg8-dev:arm64 (8c-2ubuntu8) ... Setting up libhdf5-hl-100:arm64 (1.10.6+repack-2) ... Setting up automake (1:1.16.3-2ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhx509-5-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libjpeg-dev:arm64 (8c-2ubuntu8) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up libhdf5-hl-cpp-100:arm64 (1.10.6+repack-2) ... Setting up libhdf5-fortran-102:arm64 (1.10.6+repack-2) ... Setting up libhdf5-hl-fortran-100:arm64 (1.10.6+repack-2) ... Setting up libkrb5-26-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up debhelper (13.3.4ubuntu1) ... Setting up libheimntlm0-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libgssapi3-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libhdf5-dev (1.10.6+repack-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libldap-2.4-2:arm64 (2.4.57+dfsg-2ubuntu1) ... Setting up libcurl3-gnutls:arm64 (7.74.0-1ubuntu2) ... Setting up libcurl4-gnutls-dev:arm64 (7.74.0-1ubuntu2) ... Setting up libcurl4:arm64 (7.74.0-1ubuntu2) ... Setting up libhts3:arm64 (1.11-4) ... Setting up libhts-dev:arm64 (1.11-4) ... Setting up cmake (3.18.4-2ubuntu1) ... Setting up sbuild-build-depends-kallisto-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.33-0ubuntu6) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-142-generic arm64 (aarch64) Toolchain package versions: binutils_2.36.1-6ubuntu1 dpkg-dev_1.20.9ubuntu1 g++-10_10.3.0-2ubuntu1 gcc-10_10.3.0-2ubuntu1 libc6-dev_2.33-0ubuntu6 libstdc++-10-dev_10.3.0-2ubuntu1 libstdc++6_11.1.0-1ubuntu1 linux-libc-dev_5.11.0-16.17 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1build1 apt_2.3.2 autoconf_2.69-14 automake_1:1.16.3-2ubuntu1 autopoint_0.21-3ubuntu2 autotools-dev_20180224.1+nmu1 base-files_11.1ubuntu2 base-passwd_3.5.49 bash_5.1-2ubuntu1 binutils_2.36.1-6ubuntu1 binutils-aarch64-linux-gnu_2.36.1-6ubuntu1 binutils-common_2.36.1-6ubuntu1 bsdextrautils_2.36.1-7ubuntu2 bsdutils_1:2.36.1-7ubuntu2 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu3 ca-certificates_20210119build1 cmake_3.18.4-2ubuntu1 cmake-data_3.18.4-2ubuntu1 coreutils_8.32-4ubuntu2 cpp_4:10.3.0-1ubuntu3 cpp-10_10.3.0-2ubuntu1 dash_0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1 debconf_1.5.74 debhelper_13.3.4ubuntu1 debianutils_4.11.2 debugedit_1:0.1-0ubuntu2 dh-autoreconf_20 dh-strip-nondeterminism_1.11.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.9ubuntu1 dpkg-dev_1.20.9ubuntu1 dwz_0.14-1 e2fsprogs_1.45.7-1ubuntu2 fakeroot_1.25.3-1.1ubuntu2 file_1:5.39-3 findutils_4.8.0-1ubuntu1 g++_4:10.3.0-1ubuntu3 g++-10_10.3.0-2ubuntu1 gcc_4:10.3.0-1ubuntu3 gcc-10_10.3.0-2ubuntu1 gcc-10-base_10.3.0-2ubuntu1 gcc-11-base_11.1.0-1ubuntu1 gettext_0.21-3ubuntu2 gettext-base_0.21-3ubuntu2 gpg_2.2.20-1ubuntu3 gpg-agent_2.2.20-1ubuntu3 gpgconf_2.2.20-1ubuntu3 gpgv_2.2.20-1ubuntu3 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-2ubuntu3 hdf5-helpers_1.10.6+repack-2 hostname_3.23 init_1.60 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu1 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapparmor1_3.0.0-0ubuntu7 libapt-pkg6.0_2.3.2 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2 libargon2-1_0~20171227-0.2build21.04.0 libasan6_11.1.0-1ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-2 libassuan0_2.5.4-1ubuntu1 libatomic1_11.1.0-1ubuntu1 libattr1_1:2.4.48-6build1 libaudit-common_1:3.0-2ubuntu1 libaudit1_1:3.0-2ubuntu1 libbinutils_2.36.1-6ubuntu1 libblkid1_2.36.1-7ubuntu2 libbrotli1_1.0.9-2build2 libbz2-1.0_1.0.8-4ubuntu3 libc-bin_2.33-0ubuntu6 libc-dev-bin_2.33-0ubuntu6 libc6_2.33-0ubuntu6 libc6-dev_2.33-0ubuntu6 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1build1 libcc1-0_11.1.0-1ubuntu1 libcom-err2_1.45.7-1ubuntu2 libcrypt-dev_1:4.4.17-1ubuntu3 libcrypt1_1:4.4.17-1ubuntu3 libcryptsetup12_2:2.3.4-1ubuntu3 libctf-nobfd0_2.36.1-6ubuntu1 libctf0_2.36.1-6ubuntu1 libcurl3-gnutls_7.74.0-1ubuntu2 libcurl4_7.74.0-1ubuntu2 libcurl4-gnutls-dev_7.74.0-1ubuntu2 libdb5.3_5.3.28+dfsg1-0.6ubuntu4 libdebconfclient0_0.256ubuntu3 libdebhelper-perl_13.3.4ubuntu1 libdeflate-dev_1.7-1ubuntu1 libdeflate0_1.7-1ubuntu1 libdevmapper1.02.1_2:1.02.175-2ubuntu4 libdpkg-perl_1.20.9ubuntu1 libdw1_0.183-8 libelf1_0.183-8 libexpat1_2.2.10-2 libext2fs2_1.45.7-1ubuntu2 libfakeroot_1.25.3-1.1ubuntu2 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu5 libfile-stripnondeterminism-perl_1.11.0-1 libgcc-10-dev_10.3.0-2ubuntu1 libgcc-s1_11.1.0-1ubuntu1 libgcrypt20_1.8.7-2ubuntu2 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgfortran5_11.1.0-1ubuntu1 libgmp10_2:6.2.1+dfsg-1ubuntu2 libgnutls30_3.7.1-3ubuntu1 libgomp1_11.1.0-1ubuntu1 libgpg-error0_1.38-2build1 libgssapi-krb5-2_1.18.3-4 libgssapi3-heimdal_7.7.0+dfsg-2 libhcrypto4-heimdal_7.7.0+dfsg-2 libhdf5-103-1_1.10.6+repack-2 libhdf5-cpp-103-1_1.10.6+repack-2 libhdf5-dev_1.10.6+repack-2 libhdf5-fortran-102_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libheimbase1-heimdal_7.7.0+dfsg-2 libheimntlm0-heimdal_7.7.0+dfsg-2 libhogweed6_3.7-2.1ubuntu1 libhts-dev_1.11-4 libhts3_1.11-4 libhx509-5-heimdal_7.7.0+dfsg-2 libicu67_67.1-6ubuntu2 libidn2-0_2.3.0-5 libip4tc2_1.8.7-1ubuntu2 libisl23_0.23-1build1 libitm1_11.1.0-1ubuntu1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.6-0ubuntu2 libjpeg-turbo8-dev_2.0.6-0ubuntu2 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c5_0.15-2build2 libjsoncpp24_1.9.4-4 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2ubuntu1 libkmod2_28-1ubuntu2 libkrb5-26-heimdal_7.7.0+dfsg-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libldap-2.4-2_2.4.57+dfsg-2ubuntu1 liblockfile-bin_1.17-1 liblockfile1_1.17-1 liblsan0_11.1.0-1ubuntu1 liblz4-1_1.9.3-1build1 liblzma-dev_5.2.5-1.0build2 liblzma5_5.2.5-1.0build2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-7ubuntu2 libmpc3_1.2.0-1build1 libmpfr6_4.1.0-3build1 libncurses6_6.2+20201114-2build1 libncursesw6_6.2+20201114-2build1 libnettle8_3.7-2.1ubuntu1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libp11-kit0_0.23.22-1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpcre2-8-0_10.36-2ubuntu5 libpcre3_2:8.39-13build3 libperl5.32_5.32.1-3ubuntu2 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3build3 libprocps8_2:3.3.16-5ubuntu3 libpsl5_0.21.0-1.2 libreadline8_8.1-1 librhash0_1.4.1-1 libroken18-heimdal_7.7.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2build2 libsasl2-2_2.1.27+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27+dfsg-2ubuntu1 libseccomp2_2.5.1-1ubuntu1 libselinux1_3.1-3build1 libsemanage-common_3.1-1ubuntu1 libsemanage1_3.1-1ubuntu1 libsepol1_3.1-1ubuntu1 libsigsegv2_2.13-1ubuntu1 libsmartcols1_2.36.1-7ubuntu2 libsqlite3-0_3.34.1-3 libss2_1.45.7-1ubuntu2 libssh-4_0.9.5-1 libssl1.1_1.1.1j-1ubuntu3 libstdc++-10-dev_10.3.0-2ubuntu1 libstdc++6_11.1.0-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_247.3-3ubuntu3 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2build1 libtirpc-common_1.3.1-1build1 libtirpc-dev_1.3.1-1build1 libtirpc3_1.3.1-1build1 libtool_2.4.6-15 libtsan0_11.1.0-1ubuntu1 libubsan1_11.1.0-1ubuntu1 libuchardet0_0.0.7-1 libudev1_247.3-3ubuntu3 libunistring2_0.9.10-4 libuuid1_2.36.1-7ubuntu2 libuv1_1.40.0-1 libwind0-heimdal_7.7.0+dfsg-2 libxml2_2.9.10+dfsg-6.3build2 libxxhash0_0.8.0-2 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.11.0-16.17 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu8 logsave_1.45.7-1ubuntu2 lsb-base_11.1.0ubuntu2 lto-disabled-list_7 m4_1.4.18-5 make_4.3-4ubuntu1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-7ubuntu2 ncurses-base_6.2+20201114-2build1 ncurses-bin_6.2+20201114-2build1 openssl_1.1.1j-1ubuntu3 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu8 patch_2.7.6-7 perl_5.32.1-3ubuntu2 perl-base_5.32.1-3ubuntu2 perl-modules-5.32_5.32.1-3ubuntu2 pinentry-curses_1.1.0-4build1 pkgbinarymangler_147 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu3 readline-common_8.1-1 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kallisto-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.14 systemd_247.3-3ubuntu3 systemd-sysv_247.3-3ubuntu3 systemd-timesyncd_247.3-3ubuntu3 sysvinit-utils_2.96-7ubuntu1 tar_1.34+dfsg-1build1 tzdata_2021a-1ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_24ubuntu3 util-linux_2.36.1-7ubuntu2 xz-utils_5.2.5-1.0build2 zlib1g_1:1.2.11.dfsg-2ubuntu6 zlib1g-dev_1:1.2.11.dfsg-2ubuntu6 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Mar 4 18:30:33 2021 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kallisto_0.46.2+dfsg-3.dsc dpkg-source: info: extracting kallisto in /<>/kallisto-0.46.2+dfsg dpkg-source: info: unpacking kallisto_0.46.2+dfsg.orig.tar.xz dpkg-source: info: unpacking kallisto_0.46.2+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_htslib.patch dpkg-source: info: applying spelling dpkg-source: info: applying htslib1.3 dpkg-source: info: applying Check_busOptions.seq_length_before_accessing.patch dpkg-source: info: applying gcc11.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-21475499 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-21475499 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-21475499 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package kallisto dpkg-buildpackage: info: source version 0.46.2+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/kallisto-0.46.2+dfsg' dh_auto_configure -- -DDEBIAN_BUILD=1 -DLINK=shared cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DDEBIAN_BUILD=1 -DLINK=shared .. -- The C compiler identification is GNU 10.3.0 -- The CXX compiler identification is GNU 10.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done shared build -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.11") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/<>/kallisto-0.46.2+dfsg' dh_auto_build -a cd obj-aarch64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/<>/kallisto-0.46.2+dfsg -B/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/CMakeFiles /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/depend make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.46.2+dfsg /<>/kallisto-0.46.2+dfsg/src /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/kallisto_core.dir/DependInfo.cmake --color= Dependee "/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/kallisto_core.dir/DependInfo.cmake" is newer than depender "/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/kallisto_core.dir/depend.internal". Dependee "/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/kallisto_core.dir/depend.internal". Scanning dependencies of target kallisto_core make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/build make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' [ 9%] Building CXX object src/CMakeFiles/kallisto_core.dir/BUSData.cpp.o [ 9%] Building CXX object src/CMakeFiles/kallisto_core.dir/BUSTools.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/BUSData.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/BUSData.cpp cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/BUSTools.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/BUSTools.cpp [ 19%] Building CXX object src/CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o [ 19%] Building CXX object src/CMakeFiles/kallisto_core.dir/GeneModel.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/Bootstrap.cpp cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/GeneModel.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/GeneModel.cpp [ 23%] Building CXX object src/CMakeFiles/kallisto_core.dir/H5Writer.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/H5Writer.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/H5Writer.cpp [ 28%] Building CXX object src/CMakeFiles/kallisto_core.dir/Kmer.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/Kmer.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/Kmer.cpp [ 33%] Building CXX object src/CMakeFiles/kallisto_core.dir/KmerIndex.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/KmerIndex.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/KmerIndex.cpp [ 38%] Building CXX object src/CMakeFiles/kallisto_core.dir/KmerIterator.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/KmerIterator.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/KmerIterator.cpp [ 42%] Building CXX object src/CMakeFiles/kallisto_core.dir/Merge.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/Merge.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/Merge.cpp [ 47%] Building CXX object src/CMakeFiles/kallisto_core.dir/MinCollector.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/MinCollector.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/MinCollector.cpp [ 52%] Building CXX object src/CMakeFiles/kallisto_core.dir/PlaintextWriter.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/PlaintextWriter.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/PlaintextWriter.cpp [ 57%] Building CXX object src/CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/ProcessReads.cpp [ 61%] Building CXX object src/CMakeFiles/kallisto_core.dir/PseudoBam.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/PseudoBam.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/PseudoBam.cpp [ 66%] Building CXX object src/CMakeFiles/kallisto_core.dir/common.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/common.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/common.cpp [ 71%] Building CXX object src/CMakeFiles/kallisto_core.dir/h5utils.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/h5utils.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/h5utils.cpp [ 76%] Building CXX object src/CMakeFiles/kallisto_core.dir/hash.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/hash.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/hash.cpp [ 80%] Building CXX object src/CMakeFiles/kallisto_core.dir/main.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/main.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/main.cpp [ 85%] Building CXX object src/CMakeFiles/kallisto_core.dir/weights.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/weights.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/weights.cpp [ 90%] Linking CXX static library libkallisto_core.a cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/kallisto_core.dir/cmake_clean_target.cmake cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kallisto_core.dir/link.txt --verbose=1 /usr/bin/ar qc libkallisto_core.a CMakeFiles/kallisto_core.dir/BUSData.cpp.o CMakeFiles/kallisto_core.dir/BUSTools.cpp.o CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o CMakeFiles/kallisto_core.dir/GeneModel.cpp.o CMakeFiles/kallisto_core.dir/H5Writer.cpp.o CMakeFiles/kallisto_core.dir/Kmer.cpp.o CMakeFiles/kallisto_core.dir/KmerIndex.cpp.o CMakeFiles/kallisto_core.dir/KmerIterator.cpp.o CMakeFiles/kallisto_core.dir/Merge.cpp.o CMakeFiles/kallisto_core.dir/MinCollector.cpp.o CMakeFiles/kallisto_core.dir/PlaintextWriter.cpp.o CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o CMakeFiles/kallisto_core.dir/PseudoBam.cpp.o CMakeFiles/kallisto_core.dir/common.cpp.o CMakeFiles/kallisto_core.dir/h5utils.cpp.o CMakeFiles/kallisto_core.dir/hash.cpp.o CMakeFiles/kallisto_core.dir/main.cpp.o CMakeFiles/kallisto_core.dir/weights.cpp.o /usr/bin/ranlib libkallisto_core.a make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' [ 90%] Built target kallisto_core make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/depend make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.46.2+dfsg /<>/kallisto-0.46.2+dfsg/src /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/kallisto.dir/DependInfo.cmake --color= Dependee "/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/kallisto.dir/DependInfo.cmake" is newer than depender "/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/kallisto.dir/depend.internal". 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Scanning dependencies of target kallisto make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/build make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' [ 95%] Building CXX object src/CMakeFiles/kallisto.dir/main.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto.dir/main.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/main.cpp [100%] Linking CXX executable kallisto cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kallisto.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/kallisto.dir/main.cpp.o -o kallisto libkallisto_core.a -lpthread -lhts libkallisto_core.a -lz -lrt make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' [100%] Built target kallisto make[2]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-aarch64-linux-gnu && make -j4 install DESTDIR=/<>/kallisto-0.46.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/<>/kallisto-0.46.2+dfsg -B/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/CMakeFiles /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/depend make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.46.2+dfsg /<>/kallisto-0.46.2+dfsg/src /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/kallisto_core.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/build make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/kallisto_core.dir/build'. make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' [ 90%] Built target kallisto_core make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/depend make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' cd /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.46.2+dfsg /<>/kallisto-0.46.2+dfsg/src /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/kallisto.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/build make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/kallisto.dir/build'. make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' [100%] Built target kallisto make[2]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/kallisto-0.46.2+dfsg/debian/tmp/usr/bin/kallisto make[1]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-aarch64-linux-gnu' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a 3463922b1332aa83bc5ced18454202291222d5bc dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 147 INFO: pkgstriptranslations version 147 pkgstriptranslations: processing kallisto (in debian/kallisto); do_strip: , oemstrip: pkgstriptranslations: processing kallisto-dbgsym (in debian/.debhelper/kallisto/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/kallisto/DEBIAN/control, package kallisto, directory debian/kallisto pkgstripfiles: processing control file: debian/.debhelper/kallisto/dbgsym-root/DEBIAN/control, package kallisto-dbgsym, directory debian/.debhelper/kallisto/dbgsym-root dpkg-deb: building package 'kallisto-dbgsym' in 'debian/.debhelper/scratch-space/build-kallisto/kallisto-dbgsym_0.46.2+dfsg-3_arm64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package kallisto ... pkgstripfiles: No PNG files. dpkg-deb: building package 'kallisto' in '../kallisto_0.46.2+dfsg-3_arm64.deb'. Renaming kallisto-dbgsym_0.46.2+dfsg-3_arm64.deb to kallisto-dbgsym_0.46.2+dfsg-3_arm64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../kallisto_0.46.2+dfsg-3_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-04-29T12:42:12Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kallisto_0.46.2+dfsg-3_arm64.changes: ------------------------------------- Format: 1.8 Date: Thu, 04 Mar 2021 23:54:34 +0530 Source: kallisto Binary: kallisto Built-For-Profiles: noudeb Architecture: arm64 Version: 0.46.2+dfsg-3 Distribution: impish-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Nilesh Patra Description: kallisto - near-optimal RNA-Seq quantification Closes: 984073 Changes: kallisto (0.46.2+dfsg-3) unstable; urgency=medium . * Team Upload. * debian/patches/gcc11.patch: Fix gcc-11 FTBFS (Closes: #984073) Checksums-Sha1: 35aa8a9ba1b3e9ddb0f2ed96d8e6a3ab716b336d 3228244 kallisto-dbgsym_0.46.2+dfsg-3_arm64.ddeb dca32e166c34a305e8047f8813070e3b3b5c53f4 7903 kallisto_0.46.2+dfsg-3_arm64.buildinfo 319cbc0c56f522929eb15dea2cd60fce68441acd 199724 kallisto_0.46.2+dfsg-3_arm64.deb Checksums-Sha256: cc109a58078e15fa1dc77bd27c69bf12a4095741afab0b145626e3de00c84f4a 3228244 kallisto-dbgsym_0.46.2+dfsg-3_arm64.ddeb 066c6d6dd7dde045a31a619dce9f7e7a70b44231c5fa99669b0aa0adcbeba916 7903 kallisto_0.46.2+dfsg-3_arm64.buildinfo d2bc5833c64912bc9d116ed33f2f74e4baa30762c452a6f7dfd8fa48f432b7d6 199724 kallisto_0.46.2+dfsg-3_arm64.deb Files: dcfda52843d3594a0d5ed1b0a8ca7342 3228244 debug optional kallisto-dbgsym_0.46.2+dfsg-3_arm64.ddeb c88601e0cfa6b7208e2d28f6ba165fbe 7903 science optional kallisto_0.46.2+dfsg-3_arm64.buildinfo f9f314ff5295790b2f98a0b550248e0b 199724 science optional kallisto_0.46.2+dfsg-3_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: kallisto Binary: kallisto kallisto-dbgsym Architecture: arm64 Version: 0.46.2+dfsg-3 Checksums-Md5: dcfda52843d3594a0d5ed1b0a8ca7342 3228244 kallisto-dbgsym_0.46.2+dfsg-3_arm64.ddeb f9f314ff5295790b2f98a0b550248e0b 199724 kallisto_0.46.2+dfsg-3_arm64.deb Checksums-Sha1: 35aa8a9ba1b3e9ddb0f2ed96d8e6a3ab716b336d 3228244 kallisto-dbgsym_0.46.2+dfsg-3_arm64.ddeb 319cbc0c56f522929eb15dea2cd60fce68441acd 199724 kallisto_0.46.2+dfsg-3_arm64.deb Checksums-Sha256: cc109a58078e15fa1dc77bd27c69bf12a4095741afab0b145626e3de00c84f4a 3228244 kallisto-dbgsym_0.46.2+dfsg-3_arm64.ddeb d2bc5833c64912bc9d116ed33f2f74e4baa30762c452a6f7dfd8fa48f432b7d6 199724 kallisto_0.46.2+dfsg-3_arm64.deb Build-Origin: Ubuntu Build-Architecture: arm64 Build-Date: Thu, 29 Apr 2021 12:42:11 +0000 Build-Path: /<>/kallisto-0.46.2+dfsg Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-14), automake (= 1:1.16.3-2ubuntu1), autopoint (= 0.21-3ubuntu2), autotools-dev (= 20180224.1+nmu1), base-files (= 11.1ubuntu2), base-passwd (= 3.5.49), bash (= 5.1-2ubuntu1), binutils (= 2.36.1-6ubuntu1), binutils-aarch64-linux-gnu (= 2.36.1-6ubuntu1), binutils-common (= 2.36.1-6ubuntu1), bsdextrautils (= 2.36.1-7ubuntu2), bsdutils (= 1:2.36.1-7ubuntu2), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu3), cmake (= 3.18.4-2ubuntu1), cmake-data (= 3.18.4-2ubuntu1), coreutils (= 8.32-4ubuntu2), cpp (= 4:10.3.0-1ubuntu3), cpp-10 (= 10.3.0-2ubuntu1), dash (= 0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1), debconf (= 1.5.74), debhelper (= 13.3.4ubuntu1), debianutils (= 4.11.2), debugedit (= 1:0.1-0ubuntu2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.11.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.9ubuntu1), dpkg-dev (= 1.20.9ubuntu1), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1ubuntu1), g++ (= 4:10.3.0-1ubuntu3), g++-10 (= 10.3.0-2ubuntu1), gcc (= 4:10.3.0-1ubuntu3), gcc-10 (= 10.3.0-2ubuntu1), gcc-10-base (= 10.3.0-2ubuntu1), gcc-11-base (= 11.1.0-1ubuntu1), gettext (= 0.21-3ubuntu2), gettext-base (= 0.21-3ubuntu2), grep (= 3.6-1), groff-base (= 1.22.4-6), gzip (= 1.10-2ubuntu3), hdf5-helpers (= 1.10.6+repack-2), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu1), libaec-dev (= 1.0.4-1), libaec0 (= 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1.7-1ubuntu1), libdeflate0 (= 1.7-1ubuntu1), libdpkg-perl (= 1.20.9ubuntu1), libdw1 (= 0.183-8), libelf1 (= 0.183-8), libexpat1 (= 2.2.10-2), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu5), libfile-stripnondeterminism-perl (= 1.11.0-1), libgcc-10-dev (= 10.3.0-2ubuntu1), libgcc-s1 (= 11.1.0-1ubuntu1), libgcrypt20 (= 1.8.7-2ubuntu2), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libgfortran5 (= 11.1.0-1ubuntu1), libgmp10 (= 2:6.2.1+dfsg-1ubuntu2), libgnutls30 (= 3.7.1-3ubuntu1), libgomp1 (= 11.1.0-1ubuntu1), libgpg-error0 (= 1.38-2build1), libgssapi-krb5-2 (= 1.18.3-4), libgssapi3-heimdal (= 7.7.0+dfsg-2), libhcrypto4-heimdal (= 7.7.0+dfsg-2), libhdf5-103-1 (= 1.10.6+repack-2), libhdf5-cpp-103-1 (= 1.10.6+repack-2), libhdf5-dev (= 1.10.6+repack-2), libhdf5-fortran-102 (= 1.10.6+repack-2), libhdf5-hl-100 (= 1.10.6+repack-2), libhdf5-hl-cpp-100 (= 1.10.6+repack-2), libhdf5-hl-fortran-100 (= 1.10.6+repack-2), libheimbase1-heimdal (= 7.7.0+dfsg-2), libheimntlm0-heimdal (= 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2.96-7ubuntu1), tar (= 1.34+dfsg-1build1), util-linux (= 2.36.1-7ubuntu2), xz-utils (= 5.2.5-1.0build2), zlib1g (= 1:1.2.11.dfsg-2ubuntu6), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu6) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1614882274" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kallisto_0.46.2+dfsg-3_arm64.deb -------------------------------- new Debian package, version 2.0. size 199724 bytes: control archive=1164 bytes. 1376 bytes, 24 lines control 264 bytes, 4 lines md5sums Package: kallisto Version: 0.46.2+dfsg-3 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 530 Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.3.1), libhts3 (>= 1.10), libstdc++6 (>= 6), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://pachterlab.github.io/kallisto Description: near-optimal RNA-Seq quantification Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools. drwxr-xr-x root/root 0 2021-03-04 18:24 ./ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/bin/ -rwxr-xr-x root/root 529872 2021-03-04 18:24 ./usr/bin/kallisto drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/share/ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/share/doc/kallisto/ -rw-r--r-- root/root 323 2021-03-04 16:50 ./usr/share/doc/kallisto/README.test -rw-r--r-- root/root 754 2021-03-04 18:24 ./usr/share/doc/kallisto/changelog.Debian.gz -rw-r--r-- root/root 2910 2021-03-04 16:50 ./usr/share/doc/kallisto/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: n/a Build-Time: 114 Distribution: impish-proposed Host Architecture: arm64 Install-Time: 23 Job: kallisto_0.46.2+dfsg-3.dsc Machine Architecture: arm64 Package: kallisto Package-Time: 139 Source-Version: 0.46.2+dfsg-3 Space: n/a Status: successful Version: 0.46.2+dfsg-3 -------------------------------------------------------------------------------- Finished at 2021-04-29T12:42:12Z Build needed 00:02:19, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=impish --arch=arm64 PACKAGEBUILD-21475499 Scanning for processes to kill in build PACKAGEBUILD-21475499