https://launchpad.net/ubuntu/+source/kallisto/0.46.2+dfsg-3/+build/21475502 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-063 5.8.0-20-generic #22~20.04.1-Ubuntu SMP Tue Mar 23 14:08:20 UTC 2021 riscv64 Buildd toolchain package versions: launchpad-buildd_195~480~ubuntu18.04.1 python3-lpbuildd_195~480~ubuntu18.04.1 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu3.1 dpkg-dev_1.19.7ubuntu3 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 29 Apr 13:13:01 ntpdate[1009509]: adjust time server 10.211.37.1 offset -0.001229 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=impish --arch=riscv64 PACKAGEBUILD-21475502 --image-type chroot /home/buildd/filecache-default/613cd932d11b682280b371d3f989e54c6e87a7f9 Creating target for build PACKAGEBUILD-21475502 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=impish --arch=riscv64 PACKAGEBUILD-21475502 Starting target for build PACKAGEBUILD-21475502 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=impish --arch=riscv64 PACKAGEBUILD-21475502 'deb http://ftpmaster.internal/ubuntu impish main universe' 'deb http://ftpmaster.internal/ubuntu impish-security main universe' 'deb http://ftpmaster.internal/ubuntu impish-updates main universe' 'deb http://ftpmaster.internal/ubuntu impish-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-21475502 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=impish --arch=riscv64 PACKAGEBUILD-21475502 Updating target for build PACKAGEBUILD-21475502 Get:1 http://ftpmaster.internal/ubuntu impish InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu impish-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu impish-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu impish-proposed InRelease [115 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main riscv64 Packages [1288 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu impish/universe riscv64 Packages [12.4 MB] Get:8 http://ftpmaster.internal/ubuntu impish/universe Translation-en [5441 kB] Get:9 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 Packages [58.4 kB] Get:10 http://ftpmaster.internal/ubuntu impish-proposed/main Translation-en [35.5 kB] Get:11 http://ftpmaster.internal/ubuntu impish-proposed/universe riscv64 Packages [271 kB] Get:12 http://ftpmaster.internal/ubuntu impish-proposed/universe Translation-en [128 kB] Fetched 20.7 MB in 34s (603 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files cpp cpp-10 debconf dpkg dpkg-dev g++ g++-10 gcc gcc-10 gcc-10-base gcc-11-base libapt-pkg6.0 libatomic1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libdpkg-perl libgcc-10-dev libgcc-s1 libgomp1 libstdc++-10-dev libstdc++6 libzstd1 linux-libc-dev sysvinit-utils 29 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 44.2 MB of archives. After this operation, 38.9 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 libc6-dev riscv64 2.33-0ubuntu6 [3168 kB] Get:2 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 libc-dev-bin riscv64 2.33-0ubuntu6 [17.9 kB] Get:3 http://ftpmaster.internal/ubuntu impish/main riscv64 linux-libc-dev riscv64 5.11.0-16.17 [1164 kB] Get:4 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 libatomic1 riscv64 11.1.0-1ubuntu1 [7496 B] Get:5 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 libgomp1 riscv64 11.1.0-1ubuntu1 [94.0 kB] Get:6 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 gcc-11-base riscv64 11.1.0-1ubuntu1 [18.8 kB] Get:7 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 libgcc-s1 riscv64 11.1.0-1ubuntu1 [40.0 kB] Get:8 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 libcc1-0 riscv64 11.1.0-1ubuntu1 [38.0 kB] Get:9 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 libstdc++6 riscv64 11.1.0-1ubuntu1 [591 kB] Get:10 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 libc6 riscv64 2.33-0ubuntu6 [2273 kB] Get:11 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 base-files riscv64 11.1ubuntu2 [60.7 kB] Get:12 http://ftpmaster.internal/ubuntu impish/main riscv64 dpkg riscv64 1.20.9ubuntu1 [1225 kB] Get:13 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 libc-bin riscv64 2.33-0ubuntu6 [514 kB] Get:14 http://ftpmaster.internal/ubuntu impish/main riscv64 sysvinit-utils riscv64 2.96-7ubuntu1 [19.5 kB] Get:15 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 libzstd1 riscv64 1.4.8+dfsg-2.1 [344 kB] Get:16 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 libapt-pkg6.0 riscv64 2.3.2 [820 kB] Get:17 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 apt riscv64 2.3.2 [1266 kB] Get:18 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 debconf all 1.5.76 [121 kB] Get:19 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 g++-10 riscv64 10.3.0-2ubuntu1 [7501 kB] Get:20 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 gcc-10 riscv64 10.3.0-2ubuntu1 [13.1 MB] Get:21 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 cpp-10 riscv64 10.3.0-2ubuntu1 [6520 kB] Get:22 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 libstdc++-10-dev riscv64 10.3.0-2ubuntu1 [3613 kB] Get:23 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 libgcc-10-dev riscv64 10.3.0-2ubuntu1 [472 kB] Get:24 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 gcc-10-base riscv64 10.3.0-2ubuntu1 [20.5 kB] Get:25 http://ftpmaster.internal/ubuntu impish/main riscv64 g++ riscv64 4:10.3.0-1ubuntu3 [1596 B] Get:26 http://ftpmaster.internal/ubuntu impish/main riscv64 gcc riscv64 4:10.3.0-1ubuntu3 [5220 B] Get:27 http://ftpmaster.internal/ubuntu impish/main riscv64 cpp riscv64 4:10.3.0-1ubuntu3 [27.7 kB] Get:28 http://ftpmaster.internal/ubuntu impish/main riscv64 dpkg-dev all 1.20.9ubuntu1 [937 kB] Get:29 http://ftpmaster.internal/ubuntu impish/main riscv64 libdpkg-perl all 1.20.9ubuntu1 [232 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 44.2 MB in 10s (4472 kB/s) (Reading database ... 13038 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.33-0ubuntu6_riscv64.deb ... Unpacking libc6-dev:riscv64 (2.33-0ubuntu6) over (2.33-0ubuntu5) ... Preparing to unpack .../1-libc-dev-bin_2.33-0ubuntu6_riscv64.deb ... Unpacking libc-dev-bin (2.33-0ubuntu6) over (2.33-0ubuntu5) ... Preparing to unpack .../2-linux-libc-dev_5.11.0-16.17_riscv64.deb ... Unpacking linux-libc-dev:riscv64 (5.11.0-16.17) over (5.11.0-14.15) ... Preparing to unpack .../3-libatomic1_11.1.0-1ubuntu1_riscv64.deb ... Unpacking libatomic1:riscv64 (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../4-libgomp1_11.1.0-1ubuntu1_riscv64.deb ... Unpacking libgomp1:riscv64 (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../5-gcc-11-base_11.1.0-1ubuntu1_riscv64.deb ... Unpacking gcc-11-base:riscv64 (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... Setting up gcc-11-base:riscv64 (11.1.0-1ubuntu1) ... (Reading database ... 13038 files and directories currently installed.) 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Unpacking base-files (11.1ubuntu2) over (11ubuntu18) ... Setting up base-files (11.1ubuntu2) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/dpkg/origins/debian ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Updating /etc/profile to current default. (Reading database ... 13038 files and directories currently installed.) Preparing to unpack .../dpkg_1.20.9ubuntu1_riscv64.deb ... Unpacking dpkg (1.20.9ubuntu1) over (1.20.7.1ubuntu4) ... Setting up dpkg (1.20.9ubuntu1) ... (Reading database ... 13043 files and directories currently installed.) Preparing to unpack .../libc-bin_2.33-0ubuntu6_riscv64.deb ... Unpacking libc-bin (2.33-0ubuntu6) over (2.33-0ubuntu5) ... Setting up libc-bin (2.33-0ubuntu6) ... (Reading database ... 13043 files and directories currently installed.) 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Unpacking debconf (1.5.76) over (1.5.74) ... Setting up debconf (1.5.76) ... (Reading database ... 13043 files and directories currently installed.) Preparing to unpack .../00-g++-10_10.3.0-2ubuntu1_riscv64.deb ... Unpacking g++-10 (10.3.0-2ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../01-gcc-10_10.3.0-2ubuntu1_riscv64.deb ... Unpacking gcc-10 (10.3.0-2ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../02-cpp-10_10.3.0-2ubuntu1_riscv64.deb ... Unpacking cpp-10 (10.3.0-2ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../03-libstdc++-10-dev_10.3.0-2ubuntu1_riscv64.deb ... Unpacking libstdc++-10-dev:riscv64 (10.3.0-2ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../04-libgcc-10-dev_10.3.0-2ubuntu1_riscv64.deb ... Unpacking libgcc-10-dev:riscv64 (10.3.0-2ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../05-gcc-10-base_10.3.0-2ubuntu1_riscv64.deb ... Unpacking gcc-10-base:riscv64 (10.3.0-2ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../06-g++_4%3a10.3.0-1ubuntu3_riscv64.deb ... Unpacking g++ (4:10.3.0-1ubuntu3) over (4:10.3.0-1ubuntu1) ... Preparing to unpack .../07-gcc_4%3a10.3.0-1ubuntu3_riscv64.deb ... Unpacking gcc (4:10.3.0-1ubuntu3) over (4:10.3.0-1ubuntu1) ... Preparing to unpack .../08-cpp_4%3a10.3.0-1ubuntu3_riscv64.deb ... Unpacking cpp (4:10.3.0-1ubuntu3) over (4:10.3.0-1ubuntu1) ... Preparing to unpack .../09-dpkg-dev_1.20.9ubuntu1_all.deb ... Unpacking dpkg-dev (1.20.9ubuntu1) over (1.20.7.1ubuntu4) ... Preparing to unpack .../10-libdpkg-perl_1.20.9ubuntu1_all.deb ... Unpacking libdpkg-perl (1.20.9ubuntu1) over (1.20.7.1ubuntu4) ... Setting up linux-libc-dev:riscv64 (5.11.0-16.17) ... Setting up libgomp1:riscv64 (11.1.0-1ubuntu1) ... Setting up gcc-10-base:riscv64 (10.3.0-2ubuntu1) ... Setting up libatomic1:riscv64 (11.1.0-1ubuntu1) ... Setting up libdpkg-perl (1.20.9ubuntu1) ... Setting up libc-dev-bin (2.33-0ubuntu6) ... Setting up libcc1-0:riscv64 (11.1.0-1ubuntu1) ... Setting up cpp-10 (10.3.0-2ubuntu1) ... Setting up libgcc-10-dev:riscv64 (10.3.0-2ubuntu1) ... Setting up dpkg-dev (1.20.9ubuntu1) ... Setting up gcc-10 (10.3.0-2ubuntu1) ... Setting up cpp (4:10.3.0-1ubuntu3) ... Setting up libc6-dev:riscv64 (2.33-0ubuntu6) ... Setting up libstdc++-10-dev:riscv64 (10.3.0-2ubuntu1) ... Setting up g++-10 (10.3.0-2ubuntu1) ... Setting up gcc (4:10.3.0-1ubuntu3) ... Setting up g++ (4:10.3.0-1ubuntu3) ... Processing triggers for libc-bin (2.33-0ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-21475502 riscv64 impish-proposed -c chroot:build-PACKAGEBUILD-21475502 --arch=riscv64 --dist=impish-proposed --nolog kallisto_0.46.2+dfsg-3.dsc Initiating build PACKAGEBUILD-21475502 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.8.0-20-generic #22~20.04.1-Ubuntu SMP Tue Mar 23 14:08:20 UTC 2021 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-063.buildd +==============================================================================+ | kallisto 0.46.2+dfsg-3 (riscv64) Thu, 29 Apr 2021 13:17:18 +0000 | +==============================================================================+ Package: kallisto Version: 0.46.2+dfsg-3 Source Version: 0.46.2+dfsg-3 Distribution: impish-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-21475502/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/kallisto-wKJu7U/resolver-DcIZ6R' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- kallisto_0.46.2+dfsg-3.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/kallisto-wKJu7U/kallisto-0.46.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/kallisto-wKJu7U' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), cmake, libhdf5-dev, libhts-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), cmake, libhdf5-dev, libhts-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [386 B] Get:5 copy:/<>/apt_archive ./ Packages [468 B] Fetched 1811 B in 1s (3416 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libasn1-8-heimdal libbrotli1 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libgssapi3-heimdal libhcrypto4-heimdal libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts3 libhx509-5-heimdal libicu67 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp24 libkrb5-26-heimdal libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libsz2 libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config libhdf5-doc liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libasn1-8-heimdal libbrotli1 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libgssapi3-heimdal libhcrypto4-heimdal libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts3 libhx509-5-heimdal libicu67 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp24 libkrb5-26-heimdal libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libsz2 libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded. Need to get 36.7 MB of archives. After this operation, 167 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [892 B] Get:2 http://ftpmaster.internal/ubuntu impish/main riscv64 bsdextrautils riscv64 2.36.1-7ubuntu2 [74.2 kB] Get:3 http://ftpmaster.internal/ubuntu impish/main riscv64 libuchardet0 riscv64 0.0.7-1 [67.7 kB] Get:4 http://ftpmaster.internal/ubuntu impish/main riscv64 groff-base riscv64 1.22.4-6 [831 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main riscv64 libpipeline1 riscv64 1.5.3-1 [23.9 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main riscv64 man-db riscv64 2.9.4-2 [1118 kB] Get:7 http://ftpmaster.internal/ubuntu impish/main riscv64 libelf1 riscv64 0.183-8 [42.7 kB] Get:8 http://ftpmaster.internal/ubuntu impish/main riscv64 libexpat1 riscv64 2.2.10-2 [70.0 kB] Get:9 http://ftpmaster.internal/ubuntu impish/main riscv64 libicu67 riscv64 67.1-6ubuntu2 [8507 kB] Get:10 http://ftpmaster.internal/ubuntu impish/main riscv64 libxml2 riscv64 2.9.10+dfsg-6.3build2 [542 kB] Get:11 http://ftpmaster.internal/ubuntu impish/main riscv64 libmagic-mgc riscv64 1:5.39-3 [228 kB] Get:12 http://ftpmaster.internal/ubuntu impish/main riscv64 libmagic1 riscv64 1:5.39-3 [78.3 kB] Get:13 http://ftpmaster.internal/ubuntu impish/main riscv64 file riscv64 1:5.39-3 [22.9 kB] Get:14 http://ftpmaster.internal/ubuntu impish/main riscv64 gettext-base riscv64 0.21-3ubuntu2 [37.2 kB] Get:15 http://ftpmaster.internal/ubuntu impish/main riscv64 libpsl5 riscv64 0.21.0-1.2 [52.5 kB] Get:16 http://ftpmaster.internal/ubuntu impish/main riscv64 libuv1 riscv64 1.40.0-1 [70.3 kB] Get:17 http://ftpmaster.internal/ubuntu impish/main riscv64 libsigsegv2 riscv64 2.13-1ubuntu1 [13.3 kB] Get:18 http://ftpmaster.internal/ubuntu impish/main riscv64 m4 riscv64 1.4.18-5 [190 kB] Get:19 http://ftpmaster.internal/ubuntu impish/main riscv64 autoconf all 2.69-14 [293 kB] Get:20 http://ftpmaster.internal/ubuntu impish/main riscv64 autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:21 http://ftpmaster.internal/ubuntu impish/main riscv64 automake all 1:1.16.3-2ubuntu1 [552 kB] Get:22 http://ftpmaster.internal/ubuntu impish/main riscv64 autopoint all 0.21-3ubuntu2 [422 kB] Get:23 http://ftpmaster.internal/ubuntu impish/main riscv64 cmake-data all 3.18.4-2ubuntu1 [1705 kB] Get:24 http://ftpmaster.internal/ubuntu impish/main riscv64 libarchive13 riscv64 3.4.3-2 [311 kB] Get:25 http://ftpmaster.internal/ubuntu impish/main riscv64 libbrotli1 riscv64 1.0.9-2build2 [299 kB] Get:26 http://ftpmaster.internal/ubuntu impish/main riscv64 libroken18-heimdal riscv64 7.7.0+dfsg-2 [36.5 kB] Get:27 http://ftpmaster.internal/ubuntu impish/main riscv64 libasn1-8-heimdal riscv64 7.7.0+dfsg-2 [145 kB] Get:28 http://ftpmaster.internal/ubuntu impish/main riscv64 libheimbase1-heimdal riscv64 7.7.0+dfsg-2 [24.6 kB] Get:29 http://ftpmaster.internal/ubuntu impish/main riscv64 libhcrypto4-heimdal riscv64 7.7.0+dfsg-2 [86.8 kB] Get:30 http://ftpmaster.internal/ubuntu impish/main riscv64 libwind0-heimdal riscv64 7.7.0+dfsg-2 [47.0 kB] Get:31 http://ftpmaster.internal/ubuntu impish/main riscv64 libhx509-5-heimdal riscv64 7.7.0+dfsg-2 [89.8 kB] Get:32 http://ftpmaster.internal/ubuntu impish/main riscv64 libkrb5-26-heimdal riscv64 7.7.0+dfsg-2 [175 kB] Get:33 http://ftpmaster.internal/ubuntu impish/main riscv64 libheimntlm0-heimdal riscv64 7.7.0+dfsg-2 [13.4 kB] Get:34 http://ftpmaster.internal/ubuntu impish/main riscv64 libgssapi3-heimdal riscv64 7.7.0+dfsg-2 [83.4 kB] Get:35 http://ftpmaster.internal/ubuntu impish/main riscv64 libsasl2-modules-db riscv64 2.1.27+dfsg-2ubuntu1 [13.5 kB] Get:36 http://ftpmaster.internal/ubuntu impish/main riscv64 libsasl2-2 riscv64 2.1.27+dfsg-2ubuntu1 [45.3 kB] Get:37 http://ftpmaster.internal/ubuntu impish/main riscv64 libldap-2.4-2 riscv64 2.4.57+dfsg-2ubuntu1 [138 kB] Get:38 http://ftpmaster.internal/ubuntu impish/main riscv64 libnghttp2-14 riscv64 1.43.0-1 [64.0 kB] Get:39 http://ftpmaster.internal/ubuntu impish/main riscv64 librtmp1 riscv64 2.4+20151223.gitfa8646d.1-2build2 [50.6 kB] Get:40 http://ftpmaster.internal/ubuntu impish/main riscv64 libssh-4 riscv64 0.9.5-1 [149 kB] Get:41 http://ftpmaster.internal/ubuntu impish/main riscv64 libcurl4 riscv64 7.74.0-1ubuntu2 [223 kB] Get:42 http://ftpmaster.internal/ubuntu impish/main riscv64 libjsoncpp24 riscv64 1.9.4-4 [71.8 kB] Get:43 http://ftpmaster.internal/ubuntu impish/main riscv64 librhash0 riscv64 1.4.1-1 [135 kB] Get:44 http://ftpmaster.internal/ubuntu impish/main riscv64 cmake riscv64 3.18.4-2ubuntu1 [4233 kB] Get:45 http://ftpmaster.internal/ubuntu impish/main riscv64 libdebhelper-perl all 13.3.4ubuntu1 [61.1 kB] Get:46 http://ftpmaster.internal/ubuntu impish/main riscv64 libtool all 2.4.6-15 [161 kB] Get:47 http://ftpmaster.internal/ubuntu impish/main riscv64 dh-autoreconf all 20 [16.1 kB] Get:48 http://ftpmaster.internal/ubuntu impish/main riscv64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:49 http://ftpmaster.internal/ubuntu impish/main riscv64 libsub-override-perl all 0.09-2 [9532 B] Get:50 http://ftpmaster.internal/ubuntu impish/main riscv64 libfile-stripnondeterminism-perl all 1.11.0-1 [17.0 kB] Get:51 http://ftpmaster.internal/ubuntu impish/main riscv64 dh-strip-nondeterminism all 1.11.0-1 [5236 B] Get:52 http://ftpmaster.internal/ubuntu impish/main riscv64 libdw1 riscv64 0.183-8 [204 kB] Get:53 http://ftpmaster.internal/ubuntu impish/main riscv64 debugedit riscv64 1:0.1-0ubuntu2 [42.5 kB] Get:54 http://ftpmaster.internal/ubuntu impish/main riscv64 dwz riscv64 0.14-1 [97.0 kB] Get:55 http://ftpmaster.internal/ubuntu impish/main riscv64 gettext riscv64 0.21-3ubuntu2 [769 kB] Get:56 http://ftpmaster.internal/ubuntu impish/main riscv64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:57 http://ftpmaster.internal/ubuntu impish/main riscv64 po-debconf all 1.0.21+nmu1 [233 kB] Get:58 http://ftpmaster.internal/ubuntu impish/main riscv64 debhelper all 13.3.4ubuntu1 [920 kB] Get:59 http://ftpmaster.internal/ubuntu impish/universe riscv64 hdf5-helpers riscv64 1.10.6+repack-2 [13.7 kB] Get:60 http://ftpmaster.internal/ubuntu impish/universe riscv64 libaec0 riscv64 1.0.4-1 [19.2 kB] Get:61 http://ftpmaster.internal/ubuntu impish/main riscv64 libcurl3-gnutls riscv64 7.74.0-1ubuntu2 [220 kB] Get:62 http://ftpmaster.internal/ubuntu impish/main riscv64 libcurl4-gnutls-dev riscv64 7.74.0-1ubuntu2 [649 kB] Get:63 http://ftpmaster.internal/ubuntu impish/main riscv64 libdeflate0 riscv64 1.7-1ubuntu1 [48.0 kB] Get:64 http://ftpmaster.internal/ubuntu impish/main riscv64 libdeflate-dev riscv64 1.7-1ubuntu1 [75.9 kB] Get:65 http://ftpmaster.internal/ubuntu impish-proposed/main riscv64 libgfortran5 riscv64 11.1.0-1ubuntu1 [338 kB] Get:66 http://ftpmaster.internal/ubuntu impish/universe riscv64 libsz2 riscv64 1.0.4-1 [4608 B] Get:67 http://ftpmaster.internal/ubuntu impish/universe riscv64 libhdf5-103-1 riscv64 1.10.6+repack-2 [1068 kB] Get:68 http://ftpmaster.internal/ubuntu impish/universe riscv64 libhdf5-cpp-103-1 riscv64 1.10.6+repack-2 [109 kB] Get:69 http://ftpmaster.internal/ubuntu impish/universe riscv64 libhdf5-fortran-102 riscv64 1.10.6+repack-2 [65.4 kB] Get:70 http://ftpmaster.internal/ubuntu impish/universe riscv64 libhdf5-hl-100 riscv64 1.10.6+repack-2 [47.2 kB] Get:71 http://ftpmaster.internal/ubuntu impish/universe riscv64 libhdf5-hl-fortran-100 riscv64 1.10.6+repack-2 [23.4 kB] Get:72 http://ftpmaster.internal/ubuntu impish/universe riscv64 libhdf5-hl-cpp-100 riscv64 1.10.6+repack-2 [9580 B] Get:73 http://ftpmaster.internal/ubuntu impish/main riscv64 zlib1g-dev riscv64 1:1.2.11.dfsg-2ubuntu6 [209 kB] Get:74 http://ftpmaster.internal/ubuntu impish/main riscv64 libjpeg-turbo8 riscv64 2.0.6-0ubuntu2 [100 kB] Get:75 http://ftpmaster.internal/ubuntu impish/main riscv64 libjpeg-turbo8-dev riscv64 2.0.6-0ubuntu2 [360 kB] Get:76 http://ftpmaster.internal/ubuntu impish/main riscv64 libjpeg8 riscv64 8c-2ubuntu8 [2224 B] Get:77 http://ftpmaster.internal/ubuntu impish/main riscv64 libjpeg8-dev riscv64 8c-2ubuntu8 [1692 B] Get:78 http://ftpmaster.internal/ubuntu impish/main riscv64 libjpeg-dev riscv64 8c-2ubuntu8 [1688 B] Get:79 http://ftpmaster.internal/ubuntu impish/universe riscv64 libaec-dev riscv64 1.0.4-1 [33.9 kB] Get:80 http://ftpmaster.internal/ubuntu impish/universe riscv64 libhdf5-dev riscv64 1.10.6+repack-2 [4801 kB] Get:81 http://ftpmaster.internal/ubuntu impish/universe riscv64 libhts3 riscv64 1.11-4 [324 kB] Get:82 http://ftpmaster.internal/ubuntu impish/main riscv64 liblzma-dev riscv64 5.2.5-1.0build2 [240 kB] Get:83 http://ftpmaster.internal/ubuntu impish/universe riscv64 libhts-dev riscv64 1.11-4 [3861 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 36.7 MB in 10s (3847 kB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 13045 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7ubuntu2_riscv64.deb ... Unpacking bsdextrautils (2.36.1-7ubuntu2) ... Selecting previously unselected package libuchardet0:riscv64. Preparing to unpack .../01-libuchardet0_0.0.7-1_riscv64.deb ... Unpacking libuchardet0:riscv64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_riscv64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:riscv64. Preparing to unpack .../03-libpipeline1_1.5.3-1_riscv64.deb ... Unpacking libpipeline1:riscv64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_riscv64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libelf1:riscv64. Preparing to unpack .../05-libelf1_0.183-8_riscv64.deb ... Unpacking libelf1:riscv64 (0.183-8) ... Selecting previously unselected package libexpat1:riscv64. Preparing to unpack .../06-libexpat1_2.2.10-2_riscv64.deb ... Unpacking libexpat1:riscv64 (2.2.10-2) ... Selecting previously unselected package libicu67:riscv64. Preparing to unpack .../07-libicu67_67.1-6ubuntu2_riscv64.deb ... Unpacking libicu67:riscv64 (67.1-6ubuntu2) ... Selecting previously unselected package libxml2:riscv64. Preparing to unpack .../08-libxml2_2.9.10+dfsg-6.3build2_riscv64.deb ... Unpacking libxml2:riscv64 (2.9.10+dfsg-6.3build2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../09-libmagic-mgc_1%3a5.39-3_riscv64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:riscv64. Preparing to unpack .../10-libmagic1_1%3a5.39-3_riscv64.deb ... Unpacking libmagic1:riscv64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../11-file_1%3a5.39-3_riscv64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../12-gettext-base_0.21-3ubuntu2_riscv64.deb ... Unpacking gettext-base (0.21-3ubuntu2) ... Selecting previously unselected package libpsl5:riscv64. Preparing to unpack .../13-libpsl5_0.21.0-1.2_riscv64.deb ... Unpacking libpsl5:riscv64 (0.21.0-1.2) ... Selecting previously unselected package libuv1:riscv64. Preparing to unpack .../14-libuv1_1.40.0-1_riscv64.deb ... Unpacking libuv1:riscv64 (1.40.0-1) ... Selecting previously unselected package libsigsegv2:riscv64. Preparing to unpack .../15-libsigsegv2_2.13-1ubuntu1_riscv64.deb ... Unpacking libsigsegv2:riscv64 (2.13-1ubuntu1) ... Selecting previously unselected package m4. Preparing to unpack .../16-m4_1.4.18-5_riscv64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../17-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. 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Selecting previously unselected package libroken18-heimdal:riscv64. Preparing to unpack .../24-libroken18-heimdal_7.7.0+dfsg-2_riscv64.deb ... Unpacking libroken18-heimdal:riscv64 (7.7.0+dfsg-2) ... Selecting previously unselected package libasn1-8-heimdal:riscv64. Preparing to unpack .../25-libasn1-8-heimdal_7.7.0+dfsg-2_riscv64.deb ... Unpacking libasn1-8-heimdal:riscv64 (7.7.0+dfsg-2) ... Selecting previously unselected package libheimbase1-heimdal:riscv64. Preparing to unpack .../26-libheimbase1-heimdal_7.7.0+dfsg-2_riscv64.deb ... Unpacking libheimbase1-heimdal:riscv64 (7.7.0+dfsg-2) ... Selecting previously unselected package libhcrypto4-heimdal:riscv64. Preparing to unpack .../27-libhcrypto4-heimdal_7.7.0+dfsg-2_riscv64.deb ... Unpacking libhcrypto4-heimdal:riscv64 (7.7.0+dfsg-2) ... Selecting previously unselected package libwind0-heimdal:riscv64. Preparing to unpack .../28-libwind0-heimdal_7.7.0+dfsg-2_riscv64.deb ... Unpacking libwind0-heimdal:riscv64 (7.7.0+dfsg-2) ... Selecting previously unselected package libhx509-5-heimdal:riscv64. Preparing to unpack .../29-libhx509-5-heimdal_7.7.0+dfsg-2_riscv64.deb ... Unpacking libhx509-5-heimdal:riscv64 (7.7.0+dfsg-2) ... Selecting previously unselected package libkrb5-26-heimdal:riscv64. Preparing to unpack .../30-libkrb5-26-heimdal_7.7.0+dfsg-2_riscv64.deb ... Unpacking libkrb5-26-heimdal:riscv64 (7.7.0+dfsg-2) ... Selecting previously unselected package libheimntlm0-heimdal:riscv64. Preparing to unpack .../31-libheimntlm0-heimdal_7.7.0+dfsg-2_riscv64.deb ... Unpacking libheimntlm0-heimdal:riscv64 (7.7.0+dfsg-2) ... Selecting previously unselected package libgssapi3-heimdal:riscv64. Preparing to unpack .../32-libgssapi3-heimdal_7.7.0+dfsg-2_riscv64.deb ... Unpacking libgssapi3-heimdal:riscv64 (7.7.0+dfsg-2) ... Selecting previously unselected package libsasl2-modules-db:riscv64. Preparing to unpack .../33-libsasl2-modules-db_2.1.27+dfsg-2ubuntu1_riscv64.deb ... Unpacking libsasl2-modules-db:riscv64 (2.1.27+dfsg-2ubuntu1) ... Selecting previously unselected package libsasl2-2:riscv64. Preparing to unpack .../34-libsasl2-2_2.1.27+dfsg-2ubuntu1_riscv64.deb ... Unpacking libsasl2-2:riscv64 (2.1.27+dfsg-2ubuntu1) ... Selecting previously unselected package libldap-2.4-2:riscv64. Preparing to unpack .../35-libldap-2.4-2_2.4.57+dfsg-2ubuntu1_riscv64.deb ... Unpacking libldap-2.4-2:riscv64 (2.4.57+dfsg-2ubuntu1) ... Selecting previously unselected package libnghttp2-14:riscv64. Preparing to unpack .../36-libnghttp2-14_1.43.0-1_riscv64.deb ... Unpacking libnghttp2-14:riscv64 (1.43.0-1) ... Selecting previously unselected package librtmp1:riscv64. Preparing to unpack .../37-librtmp1_2.4+20151223.gitfa8646d.1-2build2_riscv64.deb ... Unpacking librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build2) ... Selecting previously unselected package libssh-4:riscv64. Preparing to unpack .../38-libssh-4_0.9.5-1_riscv64.deb ... Unpacking libssh-4:riscv64 (0.9.5-1) ... Selecting previously unselected package libcurl4:riscv64. Preparing to unpack .../39-libcurl4_7.74.0-1ubuntu2_riscv64.deb ... Unpacking libcurl4:riscv64 (7.74.0-1ubuntu2) ... Selecting previously unselected package libjsoncpp24:riscv64. Preparing to unpack .../40-libjsoncpp24_1.9.4-4_riscv64.deb ... Unpacking libjsoncpp24:riscv64 (1.9.4-4) ... Selecting previously unselected package librhash0:riscv64. Preparing to unpack .../41-librhash0_1.4.1-1_riscv64.deb ... Unpacking librhash0:riscv64 (1.4.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../42-cmake_3.18.4-2ubuntu1_riscv64.deb ... Unpacking cmake (3.18.4-2ubuntu1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../43-libdebhelper-perl_13.3.4ubuntu1_all.deb ... Unpacking libdebhelper-perl (13.3.4ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../44-libtool_2.4.6-15_all.deb ... 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Setting up libexpat1:riscv64 (2.2.10-2) ... Setting up libpipeline1:riscv64 (1.5.3-1) ... Setting up libpsl5:riscv64 (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-7ubuntu2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up hdf5-helpers (1.10.6+repack-2) ... Setting up libicu67:riscv64 (67.1-6ubuntu2) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4ubuntu1) ... Setting up libbrotli1:riscv64 (1.0.9-2build2) ... Setting up libnghttp2-14:riscv64 (1.43.0-1) ... Setting up libmagic1:riscv64 (1:5.39-3) ... Setting up libdeflate0:riscv64 (1.7-1ubuntu1) ... Setting up gettext-base (0.21-3ubuntu2) ... Setting up file (1:5.39-3) ... Setting up libaec0:riscv64 (1.0.4-1) ... Setting up libsasl2-modules-db:riscv64 (2.1.27+dfsg-2ubuntu1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:riscv64 (1.40.0-1) ... 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Setting up libheimbase1-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up libjpeg8:riscv64 (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up libdw1:riscv64 (0.183-8) ... Setting up libjpeg-turbo8-dev:riscv64 (2.0.6-0ubuntu2) ... Setting up gettext (0.21-3ubuntu2) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:riscv64 (3.4.3-2) ... Setting up libasn1-8-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up libaec-dev:riscv64 (1.0.4-1) ... Setting up m4 (1.4.18-5) ... Setting up libhcrypto4-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libwind0-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up libhdf5-103-1:riscv64 (1.10.6+repack-2) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-6) ... Setting up libhdf5-cpp-103-1:riscv64 (1.10.6+repack-2) ... Setting up debugedit (1:0.1-0ubuntu2) ... Setting up libjpeg8-dev:riscv64 (8c-2ubuntu8) ... Setting up libhdf5-hl-100:riscv64 (1.10.6+repack-2) ... Setting up automake (1:1.16.3-2ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhx509-5-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libjpeg-dev:riscv64 (8c-2ubuntu8) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up libhdf5-hl-cpp-100:riscv64 (1.10.6+repack-2) ... Setting up libhdf5-fortran-102:riscv64 (1.10.6+repack-2) ... Setting up libhdf5-hl-fortran-100:riscv64 (1.10.6+repack-2) ... Setting up libkrb5-26-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up debhelper (13.3.4ubuntu1) ... Setting up libheimntlm0-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up libgssapi3-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up libhdf5-dev (1.10.6+repack-2) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/riscv64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libldap-2.4-2:riscv64 (2.4.57+dfsg-2ubuntu1) ... Setting up libcurl3-gnutls:riscv64 (7.74.0-1ubuntu2) ... Setting up libcurl4-gnutls-dev:riscv64 (7.74.0-1ubuntu2) ... Setting up libcurl4:riscv64 (7.74.0-1ubuntu2) ... Setting up libhts3:riscv64 (1.11-4) ... Setting up libhts-dev:riscv64 (1.11-4) ... Setting up cmake (3.18.4-2ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.33-0ubuntu6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.8.0-20-generic #22~20.04.1-Ubuntu SMP Tue Mar 23 14:08:20 UTC 2021 riscv64 (riscv64) Toolchain package versions: binutils_2.36.1-6ubuntu1 dpkg-dev_1.20.9ubuntu1 g++-10_10.3.0-2ubuntu1 gcc-10_10.3.0-2ubuntu1 libc6-dev_2.33-0ubuntu6 libstdc++-10-dev_10.3.0-2ubuntu1 libstdc++6_11.1.0-1ubuntu1 linux-libc-dev_5.11.0-16.17 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1build1 apt_2.3.2 autoconf_2.69-14 automake_1:1.16.3-2ubuntu1 autopoint_0.21-3ubuntu2 autotools-dev_20180224.1+nmu1 base-files_11.1ubuntu2 base-passwd_3.5.49 bash_5.1-2ubuntu1 binutils_2.36.1-6ubuntu1 binutils-common_2.36.1-6ubuntu1 binutils-riscv64-linux-gnu_2.36.1-6ubuntu1 bsdextrautils_2.36.1-7ubuntu2 bsdutils_1:2.36.1-7ubuntu2 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu3 ca-certificates_20210119build1 cmake_3.18.4-2ubuntu1 cmake-data_3.18.4-2ubuntu1 coreutils_8.32-4ubuntu2 cpp_4:10.3.0-1ubuntu3 cpp-10_10.3.0-2ubuntu1 dash_0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1 debconf_1.5.76 debhelper_13.3.4ubuntu1 debianutils_4.11.2 debugedit_1:0.1-0ubuntu2 dh-autoreconf_20 dh-strip-nondeterminism_1.11.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.9ubuntu1 dpkg-dev_1.20.9ubuntu1 dwz_0.14-1 e2fsprogs_1.45.7-1ubuntu2 fakeroot_1.25.3-1.1ubuntu2 file_1:5.39-3 findutils_4.8.0-1ubuntu1 g++_4:10.3.0-1ubuntu3 g++-10_10.3.0-2ubuntu1 gcc_4:10.3.0-1ubuntu3 gcc-10_10.3.0-2ubuntu1 gcc-10-base_10.3.0-2ubuntu1 gcc-11-base_11.1.0-1ubuntu1 gettext_0.21-3ubuntu2 gettext-base_0.21-3ubuntu2 gpg_2.2.20-1ubuntu3 gpg-agent_2.2.20-1ubuntu3 gpgconf_2.2.20-1ubuntu3 gpgv_2.2.20-1ubuntu3 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-2ubuntu3 hdf5-helpers_1.10.6+repack-2 hostname_3.23 init_1.60 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu1 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapparmor1_3.0.0-0ubuntu7 libapt-pkg6.0_2.3.2 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2 libargon2-1_0~20171227-0.2build21.04.0 libasn1-8-heimdal_7.7.0+dfsg-2 libassuan0_2.5.4-1ubuntu1 libatomic1_11.1.0-1ubuntu1 libattr1_1:2.4.48-6build1 libaudit-common_1:3.0-2ubuntu1 libaudit1_1:3.0-2ubuntu1 libbinutils_2.36.1-6ubuntu1 libblkid1_2.36.1-7ubuntu2 libbrotli1_1.0.9-2build2 libbz2-1.0_1.0.8-4ubuntu3 libc-bin_2.33-0ubuntu6 libc-dev-bin_2.33-0ubuntu6 libc6_2.33-0ubuntu6 libc6-dev_2.33-0ubuntu6 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1build1 libcc1-0_11.1.0-1ubuntu1 libcom-err2_1.45.7-1ubuntu2 libcrypt-dev_1:4.4.17-1ubuntu3 libcrypt1_1:4.4.17-1ubuntu3 libcryptsetup12_2:2.3.4-1ubuntu3 libctf-nobfd0_2.36.1-6ubuntu1 libctf0_2.36.1-6ubuntu1 libcurl3-gnutls_7.74.0-1ubuntu2 libcurl4_7.74.0-1ubuntu2 libcurl4-gnutls-dev_7.74.0-1ubuntu2 libdb5.3_5.3.28+dfsg1-0.6ubuntu4 libdebconfclient0_0.256ubuntu3 libdebhelper-perl_13.3.4ubuntu1 libdeflate-dev_1.7-1ubuntu1 libdeflate0_1.7-1ubuntu1 libdevmapper1.02.1_2:1.02.175-2ubuntu4 libdpkg-perl_1.20.9ubuntu1 libdw1_0.183-8 libelf1_0.183-8 libexpat1_2.2.10-2 libext2fs2_1.45.7-1ubuntu2 libfakeroot_1.25.3-1.1ubuntu2 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu5 libfile-stripnondeterminism-perl_1.11.0-1 libgcc-10-dev_10.3.0-2ubuntu1 libgcc-s1_11.1.0-1ubuntu1 libgcrypt20_1.8.7-2ubuntu2 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgfortran5_11.1.0-1ubuntu1 libgmp10_2:6.2.1+dfsg-1ubuntu2 libgnutls30_3.7.1-3ubuntu1 libgomp1_11.1.0-1ubuntu1 libgpg-error0_1.38-2build1 libgssapi-krb5-2_1.18.3-4 libgssapi3-heimdal_7.7.0+dfsg-2 libhcrypto4-heimdal_7.7.0+dfsg-2 libhdf5-103-1_1.10.6+repack-2 libhdf5-cpp-103-1_1.10.6+repack-2 libhdf5-dev_1.10.6+repack-2 libhdf5-fortran-102_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libheimbase1-heimdal_7.7.0+dfsg-2 libheimntlm0-heimdal_7.7.0+dfsg-2 libhogweed6_3.7-2.1ubuntu1 libhts-dev_1.11-4 libhts3_1.11-4 libhx509-5-heimdal_7.7.0+dfsg-2 libicu67_67.1-6ubuntu2 libidn2-0_2.3.0-5 libip4tc2_1.8.7-1ubuntu2 libisl23_0.23-1build1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.6-0ubuntu2 libjpeg-turbo8-dev_2.0.6-0ubuntu2 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c5_0.15-2build2 libjsoncpp24_1.9.4-4 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2ubuntu1 libkmod2_28-1ubuntu2 libkrb5-26-heimdal_7.7.0+dfsg-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libldap-2.4-2_2.4.57+dfsg-2ubuntu1 liblockfile-bin_1.17-1 liblockfile1_1.17-1 liblz4-1_1.9.3-1build1 liblzma-dev_5.2.5-1.0build2 liblzma5_5.2.5-1.0build2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-7ubuntu2 libmpc3_1.2.0-1build1 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libstdc++-10-dev_10.3.0-2ubuntu1 libstdc++6_11.1.0-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_247.3-3ubuntu3 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2build1 libtirpc-common_1.3.1-1build1 libtirpc-dev_1.3.1-1build1 libtirpc3_1.3.1-1build1 libtool_2.4.6-15 libuchardet0_0.0.7-1 libudev1_247.3-3ubuntu3 libunistring2_0.9.10-4 libuuid1_2.36.1-7ubuntu2 libuv1_1.40.0-1 libwind0-heimdal_7.7.0+dfsg-2 libxml2_2.9.10+dfsg-6.3build2 libxxhash0_0.8.0-2 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.11.0-16.17 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu8 logsave_1.45.7-1ubuntu2 lsb-base_11.1.0ubuntu2 lto-disabled-list_7 m4_1.4.18-5 make_4.3-4ubuntu1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-7ubuntu2 ncurses-base_6.2+20201114-2build1 ncurses-bin_6.2+20201114-2build1 openssl_1.1.1j-1ubuntu3 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu8 patch_2.7.6-7 perl_5.32.1-3ubuntu2 perl-base_5.32.1-3ubuntu2 perl-modules-5.32_5.32.1-3ubuntu2 pinentry-curses_1.1.0-4build1 pkgbinarymangler_147 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu3 readline-common_8.1-1 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.14 systemd_247.3-3ubuntu3 systemd-sysv_247.3-3ubuntu3 systemd-timesyncd_247.3-3ubuntu3 sysvinit-utils_2.96-7ubuntu1 tar_1.34+dfsg-1build1 tzdata_2021a-1ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_24ubuntu3 util-linux_2.36.1-7ubuntu2 xz-utils_5.2.5-1.0build2 zlib1g_1:1.2.11.dfsg-2ubuntu6 zlib1g-dev_1:1.2.11.dfsg-2ubuntu6 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: kallisto Binary: kallisto, kallisto-examples Architecture: any all Version: 0.46.2+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://pachterlab.github.io/kallisto Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/kallisto Vcs-Git: https://salsa.debian.org/med-team/kallisto.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), cmake, libhdf5-dev, libhts-dev Package-List: kallisto deb science optional arch=any kallisto-examples deb science optional arch=all Checksums-Sha1: 9cd6f32f91c9b65e54f0d86de9f67ce1c988d1ae 1076104 kallisto_0.46.2+dfsg.orig.tar.xz 04b83a5625fc4921236935f1093819e85fabb66b 6528 kallisto_0.46.2+dfsg-3.debian.tar.xz Checksums-Sha256: b92d212294147e371fc9e77190e6384b3101045af1f832d144101285791b29db 1076104 kallisto_0.46.2+dfsg.orig.tar.xz 21b6a71259d443f65c409894fd0f1d6c09fb2289911200836311318fb681ddb8 6528 kallisto_0.46.2+dfsg-3.debian.tar.xz Files: 0e8ff786acae328e36281ad930529f98 1076104 kallisto_0.46.2+dfsg.orig.tar.xz 1b91bb66d2af36ccf99005aa4510bcae 6528 kallisto_0.46.2+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- 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signature: No public key dpkg-source: warning: failed to verify signature on ./kallisto_0.46.2+dfsg-3.dsc dpkg-source: info: extracting kallisto in /<> dpkg-source: info: unpacking kallisto_0.46.2+dfsg.orig.tar.xz dpkg-source: info: unpacking kallisto_0.46.2+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_htslib.patch dpkg-source: info: applying spelling dpkg-source: info: applying htslib1.3 dpkg-source: info: applying Check_busOptions.seq_length_before_accessing.patch dpkg-source: info: applying gcc11.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-21475502 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-21475502 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-21475502 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package kallisto dpkg-buildpackage: info: source version 0.46.2+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DDEBIAN_BUILD=1 -DLINK=shared cd obj-riscv64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/riscv64-linux-gnu -DDEBIAN_BUILD=1 -DLINK=shared .. -- The C compiler identification is GNU 10.3.0 -- The CXX compiler identification is GNU 10.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done shared build -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found ZLIB: /usr/lib/riscv64-linux-gnu/libz.so (found version "1.2.11") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/obj-riscv64-linux-gnu make[1]: Leaving directory '/<>' dh_auto_build -a cd obj-riscv64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-riscv64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-riscv64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-riscv64-linux-gnu/CMakeFiles /<>/obj-riscv64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-riscv64-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make 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Scanning dependencies of target kallisto_core make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' [ 4%] Building CXX object src/CMakeFiles/kallisto_core.dir/BUSData.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/BUSData.cpp.o -c /<>/src/BUSData.cpp [ 9%] Building CXX object src/CMakeFiles/kallisto_core.dir/BUSTools.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/BUSTools.cpp.o -c /<>/src/BUSTools.cpp [ 14%] Building CXX object src/CMakeFiles/kallisto_core.dir/GeneModel.cpp.o [ 19%] Building CXX object src/CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/GeneModel.cpp.o -c /<>/src/GeneModel.cpp cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o -c /<>/src/Bootstrap.cpp [ 23%] Building CXX object src/CMakeFiles/kallisto_core.dir/Kmer.cpp.o [ 28%] Building CXX object src/CMakeFiles/kallisto_core.dir/KmerIndex.cpp.o [ 33%] Building CXX object src/CMakeFiles/kallisto_core.dir/H5Writer.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/Kmer.cpp.o -c /<>/src/Kmer.cpp cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/KmerIndex.cpp.o -c /<>/src/KmerIndex.cpp [ 38%] Building CXX object src/CMakeFiles/kallisto_core.dir/KmerIterator.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/H5Writer.cpp.o -c /<>/src/H5Writer.cpp cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/KmerIterator.cpp.o -c /<>/src/KmerIterator.cpp [ 42%] Building CXX object src/CMakeFiles/kallisto_core.dir/Merge.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/Merge.cpp.o -c /<>/src/Merge.cpp [ 47%] Building CXX object src/CMakeFiles/kallisto_core.dir/MinCollector.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/MinCollector.cpp.o -c /<>/src/MinCollector.cpp [ 52%] Building CXX object src/CMakeFiles/kallisto_core.dir/PlaintextWriter.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/PlaintextWriter.cpp.o -c /<>/src/PlaintextWriter.cpp [ 57%] Building CXX object src/CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o -c /<>/src/ProcessReads.cpp [ 61%] Building CXX object src/CMakeFiles/kallisto_core.dir/PseudoBam.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/PseudoBam.cpp.o -c /<>/src/PseudoBam.cpp [ 66%] Building CXX object src/CMakeFiles/kallisto_core.dir/common.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/common.cpp.o -c /<>/src/common.cpp [ 71%] Building CXX object src/CMakeFiles/kallisto_core.dir/h5utils.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/h5utils.cpp.o -c /<>/src/h5utils.cpp [ 76%] Building CXX object src/CMakeFiles/kallisto_core.dir/hash.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/hash.cpp.o -c /<>/src/hash.cpp [ 80%] Building CXX object src/CMakeFiles/kallisto_core.dir/main.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/main.cpp.o -c /<>/src/main.cpp [ 85%] Building CXX object src/CMakeFiles/kallisto_core.dir/weights.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/weights.cpp.o -c /<>/src/weights.cpp [ 90%] Linking CXX static library libkallisto_core.a cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/kallisto_core.dir/cmake_clean_target.cmake cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kallisto_core.dir/link.txt --verbose=1 /usr/bin/ar qc libkallisto_core.a CMakeFiles/kallisto_core.dir/BUSData.cpp.o CMakeFiles/kallisto_core.dir/BUSTools.cpp.o CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o CMakeFiles/kallisto_core.dir/GeneModel.cpp.o CMakeFiles/kallisto_core.dir/H5Writer.cpp.o CMakeFiles/kallisto_core.dir/Kmer.cpp.o CMakeFiles/kallisto_core.dir/KmerIndex.cpp.o CMakeFiles/kallisto_core.dir/KmerIterator.cpp.o CMakeFiles/kallisto_core.dir/Merge.cpp.o CMakeFiles/kallisto_core.dir/MinCollector.cpp.o CMakeFiles/kallisto_core.dir/PlaintextWriter.cpp.o CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o CMakeFiles/kallisto_core.dir/PseudoBam.cpp.o CMakeFiles/kallisto_core.dir/common.cpp.o CMakeFiles/kallisto_core.dir/h5utils.cpp.o CMakeFiles/kallisto_core.dir/hash.cpp.o CMakeFiles/kallisto_core.dir/main.cpp.o CMakeFiles/kallisto_core.dir/weights.cpp.o /usr/bin/ranlib libkallisto_core.a make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [ 90%] Built target kallisto_core make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/depend make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/src /<>/obj-riscv64-linux-gnu/src/CMakeFiles/kallisto.dir/DependInfo.cmake --color= Dependee "/<>/obj-riscv64-linux-gnu/src/CMakeFiles/kallisto.dir/DependInfo.cmake" is newer than depender "/<>/obj-riscv64-linux-gnu/src/CMakeFiles/kallisto.dir/depend.internal". 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Scanning dependencies of target kallisto make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' [ 95%] Building CXX object src/CMakeFiles/kallisto.dir/main.cpp.o cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto.dir/main.cpp.o -c /<>/src/main.cpp [100%] Linking CXX executable kallisto cd /<>/obj-riscv64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kallisto.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/kallisto.dir/main.cpp.o -o kallisto libkallisto_core.a -lpthread -lhts libkallisto_core.a -lz -lrt -latomic make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [100%] Built target kallisto make[2]: Leaving directory '/<>/obj-riscv64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-riscv64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-riscv64-linux-gnu' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-riscv64-linux-gnu && make -j8 install DESTDIR=/<>/kallisto-0.46.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-riscv64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-riscv64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-riscv64-linux-gnu/CMakeFiles /<>/obj-riscv64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-riscv64-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/depend make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/src /<>/obj-riscv64-linux-gnu/src/CMakeFiles/kallisto_core.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/kallisto_core.dir/build'. make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [ 90%] Built target kallisto_core make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/depend make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/src /<>/obj-riscv64-linux-gnu/src/CMakeFiles/kallisto.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/kallisto.dir/build'. make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [100%] Built target kallisto make[2]: Leaving directory '/<>/obj-riscv64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-riscv64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-riscv64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-riscv64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/kallisto make[1]: Leaving directory '/<>/obj-riscv64-linux-gnu' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a c791a85aebd4ca1a2165343a101cd68d46ceff1d dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 147 INFO: pkgstriptranslations version 147 pkgstriptranslations: processing kallisto (in debian/kallisto); do_strip: , oemstrip: pkgstriptranslations: processing kallisto-dbgsym (in debian/.debhelper/kallisto/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/kallisto/DEBIAN/control, package kallisto, directory debian/kallisto pkgstripfiles: processing control file: debian/.debhelper/kallisto/dbgsym-root/DEBIAN/control, package kallisto-dbgsym, directory debian/.debhelper/kallisto/dbgsym-root dpkg-deb: building package 'kallisto-dbgsym' in 'debian/.debhelper/scratch-space/build-kallisto/kallisto-dbgsym_0.46.2+dfsg-3_riscv64.deb'. pkgstripfiles: Running PNG optimization (using 8 cpus) for package kallisto ... pkgstripfiles: No PNG files. dpkg-deb: building package 'kallisto' in '../kallisto_0.46.2+dfsg-3_riscv64.deb'. Renaming kallisto-dbgsym_0.46.2+dfsg-3_riscv64.deb to kallisto-dbgsym_0.46.2+dfsg-3_riscv64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../kallisto_0.46.2+dfsg-3_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-04-29T13:30:03Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kallisto_0.46.2+dfsg-3_riscv64.changes: --------------------------------------- Format: 1.8 Date: Thu, 04 Mar 2021 23:54:34 +0530 Source: kallisto Binary: kallisto Built-For-Profiles: noudeb Architecture: riscv64 Version: 0.46.2+dfsg-3 Distribution: impish-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Nilesh Patra Description: kallisto - near-optimal RNA-Seq quantification Closes: 984073 Changes: kallisto (0.46.2+dfsg-3) unstable; urgency=medium . * Team Upload. * debian/patches/gcc11.patch: Fix gcc-11 FTBFS (Closes: #984073) Checksums-Sha1: 7f3c599b851bc9322a03f85b5b3e16f834e416b7 2801676 kallisto-dbgsym_0.46.2+dfsg-3_riscv64.ddeb d086754d52bb7672a36c148180c0ca6a56323304 7739 kallisto_0.46.2+dfsg-3_riscv64.buildinfo af44cc4bb2f4eb10e9905f4d247a983137504db2 234704 kallisto_0.46.2+dfsg-3_riscv64.deb Checksums-Sha256: a0bcef8e967ea157f6a7a5b87b82497f1ee1cea0eaf4109365efa8add53268b6 2801676 kallisto-dbgsym_0.46.2+dfsg-3_riscv64.ddeb 23f6793fa0cebb2275dcf73bfb9fd19162a3f7e3284a034e3e7cc40a4f8261f0 7739 kallisto_0.46.2+dfsg-3_riscv64.buildinfo 2c378eea187de380ac2334d9d8c2831de417a2e503f61b2cb23c7dbef3a4025f 234704 kallisto_0.46.2+dfsg-3_riscv64.deb Files: 328d8c58203e1225538b0a6d5910ef06 2801676 debug optional kallisto-dbgsym_0.46.2+dfsg-3_riscv64.ddeb eb0915c6bb506af01ec09ac42da7e0a2 7739 science optional kallisto_0.46.2+dfsg-3_riscv64.buildinfo fe3bf3136bc641a7bb15a0012f14fdf8 234704 science optional kallisto_0.46.2+dfsg-3_riscv64.deb /<>/kallisto_0.46.2+dfsg-3_riscv64.changes.new could not be renamed to /<>/kallisto_0.46.2+dfsg-3_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: kallisto Binary: kallisto kallisto-dbgsym Architecture: riscv64 Version: 0.46.2+dfsg-3 Checksums-Md5: 328d8c58203e1225538b0a6d5910ef06 2801676 kallisto-dbgsym_0.46.2+dfsg-3_riscv64.ddeb fe3bf3136bc641a7bb15a0012f14fdf8 234704 kallisto_0.46.2+dfsg-3_riscv64.deb Checksums-Sha1: 7f3c599b851bc9322a03f85b5b3e16f834e416b7 2801676 kallisto-dbgsym_0.46.2+dfsg-3_riscv64.ddeb af44cc4bb2f4eb10e9905f4d247a983137504db2 234704 kallisto_0.46.2+dfsg-3_riscv64.deb Checksums-Sha256: a0bcef8e967ea157f6a7a5b87b82497f1ee1cea0eaf4109365efa8add53268b6 2801676 kallisto-dbgsym_0.46.2+dfsg-3_riscv64.ddeb 2c378eea187de380ac2334d9d8c2831de417a2e503f61b2cb23c7dbef3a4025f 234704 kallisto_0.46.2+dfsg-3_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Thu, 29 Apr 2021 13:29:57 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-14), automake (= 1:1.16.3-2ubuntu1), autopoint (= 0.21-3ubuntu2), autotools-dev (= 20180224.1+nmu1), base-files (= 11.1ubuntu2), base-passwd (= 3.5.49), bash (= 5.1-2ubuntu1), binutils (= 2.36.1-6ubuntu1), binutils-common (= 2.36.1-6ubuntu1), binutils-riscv64-linux-gnu (= 2.36.1-6ubuntu1), bsdextrautils (= 2.36.1-7ubuntu2), bsdutils (= 1:2.36.1-7ubuntu2), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu3), cmake (= 3.18.4-2ubuntu1), cmake-data 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DEB_BUILD_OPTIONS="nocheck parallel=8" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1614882274" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kallisto_0.46.2+dfsg-3_riscv64.deb ---------------------------------- new Debian package, version 2.0. size 234704 bytes: control archive=1160 bytes. 1376 bytes, 24 lines control 264 bytes, 4 lines md5sums Package: kallisto Version: 0.46.2+dfsg-3 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 544 Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.4), libhts3 (>= 1.10), libstdc++6 (>= 6), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://pachterlab.github.io/kallisto Description: near-optimal RNA-Seq quantification Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools. drwxr-xr-x root/root 0 2021-03-04 18:24 ./ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/bin/ -rwxr-xr-x root/root 543872 2021-03-04 18:24 ./usr/bin/kallisto drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/share/ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/share/doc/kallisto/ -rw-r--r-- root/root 323 2021-03-04 16:50 ./usr/share/doc/kallisto/README.test -rw-r--r-- root/root 754 2021-03-04 18:24 ./usr/share/doc/kallisto/changelog.Debian.gz -rw-r--r-- root/root 2910 2021-03-04 16:50 ./usr/share/doc/kallisto/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 132748 Build-Time: 545 Distribution: impish-proposed Host Architecture: riscv64 Install-Time: 169 Job: kallisto_0.46.2+dfsg-3.dsc Machine Architecture: riscv64 Package: kallisto Package-Time: 765 Source-Version: 0.46.2+dfsg-3 Space: 132748 Status: successful Version: 0.46.2+dfsg-3 -------------------------------------------------------------------------------- Finished at 2021-04-29T13:30:03Z Build needed 00:12:45, 132748k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=impish --arch=riscv64 PACKAGEBUILD-21475502 Scanning for processes to kill in build PACKAGEBUILD-21475502 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=impish --arch=riscv64 PACKAGEBUILD-21475502 Stopping target for build PACKAGEBUILD-21475502 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=impish --arch=riscv64 PACKAGEBUILD-21475502 Removing build PACKAGEBUILD-21475502