https://launchpad.net/ubuntu/+source/kallisto/0.46.2+dfsg-3/+build/21475503 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-012 4.15.0-142-generic #146-Ubuntu SMP Tue Apr 13 01:05:37 UTC 2021 s390x Buildd toolchain package versions: launchpad-buildd_195~480~ubuntu18.04.1 python3-lpbuildd_195~480~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.8 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 29 Apr 13:10:18 ntpdate[1690]: adjust time server 10.211.37.1 offset 0.039505 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=impish --arch=s390x PACKAGEBUILD-21475503 --image-type chroot /home/buildd/filecache-default/b6a0d461e155d890cb32ede1aba203da854405ed Creating target for build PACKAGEBUILD-21475503 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=impish --arch=s390x PACKAGEBUILD-21475503 Starting target for build PACKAGEBUILD-21475503 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=impish --arch=s390x PACKAGEBUILD-21475503 'deb http://ftpmaster.internal/ubuntu impish main universe' 'deb http://ftpmaster.internal/ubuntu impish-security main universe' 'deb http://ftpmaster.internal/ubuntu impish-updates main universe' 'deb http://ftpmaster.internal/ubuntu impish-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-21475503 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=impish --arch=s390x PACKAGEBUILD-21475503 Updating target for build PACKAGEBUILD-21475503 Get:1 http://ftpmaster.internal/ubuntu impish InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu impish-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu impish-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu impish-proposed InRelease [115 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main s390x Packages [1336 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu impish/universe s390x Packages [12.6 MB] Get:8 http://ftpmaster.internal/ubuntu impish/universe Translation-en [5441 kB] Get:9 http://ftpmaster.internal/ubuntu impish-proposed/main s390x Packages [94.3 kB] Get:10 http://ftpmaster.internal/ubuntu impish-proposed/main Translation-en [35.5 kB] Get:11 http://ftpmaster.internal/ubuntu impish-proposed/universe s390x Packages [325 kB] Get:12 http://ftpmaster.internal/ubuntu impish-proposed/universe Translation-en [128 kB] Fetched 21.0 MB in 4s (5535 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files cpp cpp-10 debconf dpkg dpkg-dev g++ g++-10 gcc gcc-10 gcc-10-base gcc-11-base libapt-pkg6.0 libasan6 libatomic1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libdpkg-perl libgcc-10-dev libgcc-s1 libgomp1 libgssapi-krb5-2 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 libstdc++-10-dev libstdc++6 libubsan1 libzstd1 linux-libc-dev sysvinit-utils 36 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 49.0 MB of archives. After this operation, 2939 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libc6-dev s390x 2.33-0ubuntu6 [1737 kB] Get:2 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libc-dev-bin s390x 2.33-0ubuntu6 [18.7 kB] Get:3 http://ftpmaster.internal/ubuntu impish/main s390x linux-libc-dev s390x 5.11.0-16.17 [1199 kB] Get:4 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libubsan1 s390x 11.1.0-1ubuntu1 [812 kB] Get:5 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libitm1 s390x 11.1.0-1ubuntu1 [25.6 kB] Get:6 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libgomp1 s390x 11.1.0-1ubuntu1 [99.4 kB] Get:7 http://ftpmaster.internal/ubuntu impish-proposed/main s390x gcc-11-base s390x 11.1.0-1ubuntu1 [18.9 kB] Get:8 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libgcc-s1 s390x 11.1.0-1ubuntu1 [25.5 kB] Get:9 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libcc1-0 s390x 11.1.0-1ubuntu1 [46.2 kB] Get:10 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libatomic1 s390x 11.1.0-1ubuntu1 [8384 B] Get:11 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libasan6 s390x 11.1.0-1ubuntu1 [1935 kB] Get:12 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libstdc++6 s390x 11.1.0-1ubuntu1 [585 kB] Get:13 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libc6 s390x 2.33-0ubuntu6 [2338 kB] Get:14 http://ftpmaster.internal/ubuntu impish-proposed/main s390x base-files s390x 11.1ubuntu2 [61.0 kB] Get:15 http://ftpmaster.internal/ubuntu impish/main s390x dpkg s390x 1.20.9ubuntu1 [1293 kB] Get:16 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libc-bin s390x 2.33-0ubuntu6 [600 kB] Get:17 http://ftpmaster.internal/ubuntu impish/main s390x sysvinit-utils s390x 2.96-7ubuntu1 [20.1 kB] Get:18 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libzstd1 s390x 1.4.8+dfsg-2.1 [287 kB] Get:19 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libapt-pkg6.0 s390x 2.3.2 [765 kB] Get:20 http://ftpmaster.internal/ubuntu impish-proposed/main s390x apt s390x 2.3.2 [1281 kB] Get:21 http://ftpmaster.internal/ubuntu impish-proposed/main s390x debconf all 1.5.76 [121 kB] Get:22 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libgssapi-krb5-2 s390x 1.18.3-5 [141 kB] Get:23 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libkrb5-3 s390x 1.18.3-5 [354 kB] Get:24 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libkrb5support0 s390x 1.18.3-5 [30.3 kB] Get:25 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libk5crypto3 s390x 1.18.3-5 [80.5 kB] Get:26 http://ftpmaster.internal/ubuntu impish-proposed/main s390x g++-10 s390x 10.3.0-2ubuntu1 [8828 kB] Get:27 http://ftpmaster.internal/ubuntu impish-proposed/main s390x gcc-10 s390x 10.3.0-2ubuntu1 [15.1 MB] Get:28 http://ftpmaster.internal/ubuntu impish-proposed/main s390x cpp-10 s390x 10.3.0-2ubuntu1 [7442 kB] Get:29 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libstdc++-10-dev s390x 10.3.0-2ubuntu1 [1743 kB] Get:30 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libgcc-10-dev s390x 10.3.0-2ubuntu1 [774 kB] Get:31 http://ftpmaster.internal/ubuntu impish-proposed/main s390x gcc-10-base s390x 10.3.0-2ubuntu1 [20.5 kB] Get:32 http://ftpmaster.internal/ubuntu impish/main s390x g++ s390x 4:10.3.0-1ubuntu3 [1608 B] Get:33 http://ftpmaster.internal/ubuntu impish/main s390x gcc s390x 4:10.3.0-1ubuntu3 [5212 B] Get:34 http://ftpmaster.internal/ubuntu impish/main s390x cpp s390x 4:10.3.0-1ubuntu3 [27.7 kB] Get:35 http://ftpmaster.internal/ubuntu impish/main s390x dpkg-dev all 1.20.9ubuntu1 [937 kB] Get:36 http://ftpmaster.internal/ubuntu impish/main s390x libdpkg-perl all 1.20.9ubuntu1 [232 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 49.0 MB in 1s (59.3 MB/s) (Reading database ... 12912 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.33-0ubuntu6_s390x.deb ... Unpacking libc6-dev:s390x (2.33-0ubuntu6) over (2.33-0ubuntu5) ... Preparing to unpack .../1-libc-dev-bin_2.33-0ubuntu6_s390x.deb ... Unpacking libc-dev-bin (2.33-0ubuntu6) over (2.33-0ubuntu5) ... Preparing to unpack .../2-linux-libc-dev_5.11.0-16.17_s390x.deb ... Unpacking linux-libc-dev:s390x (5.11.0-16.17) over (5.11.0-14.15) ... Preparing to unpack .../3-libubsan1_11.1.0-1ubuntu1_s390x.deb ... Unpacking libubsan1:s390x (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../4-libitm1_11.1.0-1ubuntu1_s390x.deb ... Unpacking libitm1:s390x (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../5-libgomp1_11.1.0-1ubuntu1_s390x.deb ... Unpacking libgomp1:s390x (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../6-gcc-11-base_11.1.0-1ubuntu1_s390x.deb ... Unpacking gcc-11-base:s390x (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... Setting up gcc-11-base:s390x (11.1.0-1ubuntu1) ... (Reading database ... 12912 files and directories currently installed.) Preparing to unpack .../libgcc-s1_11.1.0-1ubuntu1_s390x.deb ... Unpacking libgcc-s1:s390x (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... Setting up libgcc-s1:s390x (11.1.0-1ubuntu1) ... (Reading database ... 12912 files and directories currently installed.) Preparing to unpack .../libcc1-0_11.1.0-1ubuntu1_s390x.deb ... Unpacking libcc1-0:s390x (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../libatomic1_11.1.0-1ubuntu1_s390x.deb ... Unpacking libatomic1:s390x (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../libasan6_11.1.0-1ubuntu1_s390x.deb ... Unpacking libasan6:s390x (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../libstdc++6_11.1.0-1ubuntu1_s390x.deb ... Unpacking libstdc++6:s390x (11.1.0-1ubuntu1) over (11-20210417-1ubuntu1) ... Setting up libstdc++6:s390x (11.1.0-1ubuntu1) ... (Reading database ... 12912 files and directories currently installed.) Preparing to unpack .../libc6_2.33-0ubuntu6_s390x.deb ... Unpacking libc6:s390x (2.33-0ubuntu6) over (2.33-0ubuntu5) ... Setting up libc6:s390x (2.33-0ubuntu6) ... (Reading database ... 12912 files and directories currently installed.) Preparing to unpack .../base-files_11.1ubuntu2_s390x.deb ... Unpacking base-files (11.1ubuntu2) over (11ubuntu18) ... Setting up base-files (11.1ubuntu2) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/dpkg/origins/debian ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Updating /etc/profile to current default. (Reading database ... 12912 files and directories currently installed.) Preparing to unpack .../dpkg_1.20.9ubuntu1_s390x.deb ... Unpacking dpkg (1.20.9ubuntu1) over (1.20.7.1ubuntu4) ... Setting up dpkg (1.20.9ubuntu1) ... (Reading database ... 12917 files and directories currently installed.) Preparing to unpack .../libc-bin_2.33-0ubuntu6_s390x.deb ... Unpacking libc-bin (2.33-0ubuntu6) over (2.33-0ubuntu5) ... Setting up libc-bin (2.33-0ubuntu6) ... (Reading database ... 12917 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-7ubuntu1_s390x.deb ... Unpacking sysvinit-utils (2.96-7ubuntu1) over (2.96-6ubuntu1) ... Setting up sysvinit-utils (2.96-7ubuntu1) ... (Reading database ... 12917 files and directories currently installed.) Preparing to unpack .../libzstd1_1.4.8+dfsg-2.1_s390x.deb ... Unpacking libzstd1:s390x (1.4.8+dfsg-2.1) over (1.4.8+dfsg-2build2) ... Setting up libzstd1:s390x (1.4.8+dfsg-2.1) ... (Reading database ... 12917 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.3.2_s390x.deb ... Unpacking libapt-pkg6.0:s390x (2.3.2) over (2.2.3) ... Setting up libapt-pkg6.0:s390x (2.3.2) ... (Reading database ... 12917 files and directories currently installed.) Preparing to unpack .../archives/apt_2.3.2_s390x.deb ... Unpacking apt (2.3.2) over (2.2.3) ... Setting up apt (2.3.2) ... (Reading database ... 12917 files and directories currently installed.) Preparing to unpack .../debconf_1.5.76_all.deb ... Unpacking debconf (1.5.76) over (1.5.74) ... Setting up debconf (1.5.76) ... (Reading database ... 12917 files and directories currently installed.) Preparing to unpack .../00-libgssapi-krb5-2_1.18.3-5_s390x.deb ... Unpacking libgssapi-krb5-2:s390x (1.18.3-5) over (1.18.3-4) ... Preparing to unpack .../01-libkrb5-3_1.18.3-5_s390x.deb ... Unpacking libkrb5-3:s390x (1.18.3-5) over (1.18.3-4) ... Preparing to unpack .../02-libkrb5support0_1.18.3-5_s390x.deb ... Unpacking libkrb5support0:s390x (1.18.3-5) over (1.18.3-4) ... Preparing to unpack .../03-libk5crypto3_1.18.3-5_s390x.deb ... Unpacking libk5crypto3:s390x (1.18.3-5) over (1.18.3-4) ... Preparing to unpack .../04-g++-10_10.3.0-2ubuntu1_s390x.deb ... Unpacking g++-10 (10.3.0-2ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../05-gcc-10_10.3.0-2ubuntu1_s390x.deb ... Unpacking gcc-10 (10.3.0-2ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../06-cpp-10_10.3.0-2ubuntu1_s390x.deb ... Unpacking cpp-10 (10.3.0-2ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../07-libstdc++-10-dev_10.3.0-2ubuntu1_s390x.deb ... Unpacking libstdc++-10-dev:s390x (10.3.0-2ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../08-libgcc-10-dev_10.3.0-2ubuntu1_s390x.deb ... Unpacking libgcc-10-dev:s390x (10.3.0-2ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../09-gcc-10-base_10.3.0-2ubuntu1_s390x.deb ... Unpacking gcc-10-base:s390x (10.3.0-2ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../10-g++_4%3a10.3.0-1ubuntu3_s390x.deb ... Unpacking g++ (4:10.3.0-1ubuntu3) over (4:10.3.0-1ubuntu1) ... Preparing to unpack .../11-gcc_4%3a10.3.0-1ubuntu3_s390x.deb ... Unpacking gcc (4:10.3.0-1ubuntu3) over (4:10.3.0-1ubuntu1) ... Preparing to unpack .../12-cpp_4%3a10.3.0-1ubuntu3_s390x.deb ... Unpacking cpp (4:10.3.0-1ubuntu3) over (4:10.3.0-1ubuntu1) ... Preparing to unpack .../13-dpkg-dev_1.20.9ubuntu1_all.deb ... Unpacking dpkg-dev (1.20.9ubuntu1) over (1.20.7.1ubuntu4) ... Preparing to unpack .../14-libdpkg-perl_1.20.9ubuntu1_all.deb ... Unpacking libdpkg-perl (1.20.9ubuntu1) over (1.20.7.1ubuntu4) ... Setting up linux-libc-dev:s390x (5.11.0-16.17) ... Setting up libgomp1:s390x (11.1.0-1ubuntu1) ... Setting up libasan6:s390x (11.1.0-1ubuntu1) ... Setting up libkrb5support0:s390x (1.18.3-5) ... Setting up gcc-10-base:s390x (10.3.0-2ubuntu1) ... Setting up libatomic1:s390x (11.1.0-1ubuntu1) ... Setting up libk5crypto3:s390x (1.18.3-5) ... Setting up libdpkg-perl (1.20.9ubuntu1) ... Setting up libubsan1:s390x (11.1.0-1ubuntu1) ... Setting up libkrb5-3:s390x (1.18.3-5) ... Setting up libc-dev-bin (2.33-0ubuntu6) ... Setting up libcc1-0:s390x (11.1.0-1ubuntu1) ... Setting up cpp-10 (10.3.0-2ubuntu1) ... Setting up libitm1:s390x (11.1.0-1ubuntu1) ... Setting up libgcc-10-dev:s390x (10.3.0-2ubuntu1) ... Setting up dpkg-dev (1.20.9ubuntu1) ... Setting up libgssapi-krb5-2:s390x (1.18.3-5) ... Setting up gcc-10 (10.3.0-2ubuntu1) ... Setting up cpp (4:10.3.0-1ubuntu3) ... Setting up libc6-dev:s390x (2.33-0ubuntu6) ... Setting up libstdc++-10-dev:s390x (10.3.0-2ubuntu1) ... Setting up g++-10 (10.3.0-2ubuntu1) ... Setting up gcc (4:10.3.0-1ubuntu3) ... Setting up g++ (4:10.3.0-1ubuntu3) ... Processing triggers for libc-bin (2.33-0ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-21475503 s390x impish-proposed -c chroot:build-PACKAGEBUILD-21475503 --arch=s390x --dist=impish-proposed --nolog kallisto_0.46.2+dfsg-3.dsc Initiating build PACKAGEBUILD-21475503 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-142-generic #146-Ubuntu SMP Tue Apr 13 01:05:37 UTC 2021 s390x sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-s390x-012.buildd +==============================================================================+ | kallisto 0.46.2+dfsg-3 (s390x) Thu, 29 Apr 2021 13:10:34 +0000 | +==============================================================================+ Package: kallisto Version: 0.46.2+dfsg-3 Source Version: 0.46.2+dfsg-3 Distribution: impish-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-21475503/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- kallisto_0.46.2+dfsg-3.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/kallisto-zZ78el/kallisto-0.46.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/kallisto-zZ78el' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-uDugE7/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-uDugE7/apt_archive ./ InRelease Get:2 copy:/<>/resolver-uDugE7/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-uDugE7/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-uDugE7/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-uDugE7/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-uDugE7/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12919 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), cmake, libhdf5-dev, libhts-dev Filtered Build-Depends: debhelper-compat (= 12), cmake, libhdf5-dev, libhts-dev dpkg-deb: building package 'sbuild-build-depends-kallisto-dummy' in '/<>/resolver-uDugE7/apt_archive/sbuild-build-depends-kallisto-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-kallisto-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-uDugE7/apt_archive ./ InRelease Get:2 copy:/<>/resolver-uDugE7/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-uDugE7/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-uDugE7/apt_archive ./ Sources [508 B] Get:5 copy:/<>/resolver-uDugE7/apt_archive ./ Packages [590 B] Fetched 2061 B in 0s (0 B/s) Reading package lists... Reading package lists... Install kallisto build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libasn1-8-heimdal libbrotli1 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libgssapi3-heimdal libhcrypto4-heimdal libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts3 libhx509-5-heimdal libicu67 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp24 libkrb5-26-heimdal libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libsz2 libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config libhdf5-doc liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libasn1-8-heimdal libbrotli1 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libgssapi3-heimdal libhcrypto4-heimdal libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts3 libhx509-5-heimdal libicu67 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp24 libkrb5-26-heimdal libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libsz2 libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf sbuild-build-depends-kallisto-dummy zlib1g-dev 0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded. Need to get 36.3 MB of archives. After this operation, 141 MB of additional disk space will be used. Get:1 copy:/<>/resolver-uDugE7/apt_archive ./ sbuild-build-depends-kallisto-dummy 0.invalid.0 [884 B] Get:2 http://ftpmaster.internal/ubuntu impish/main s390x bsdextrautils s390x 2.36.1-7ubuntu2 [81.5 kB] Get:3 http://ftpmaster.internal/ubuntu impish/main s390x libuchardet0 s390x 0.0.7-1 [67.5 kB] Get:4 http://ftpmaster.internal/ubuntu impish/main s390x groff-base s390x 1.22.4-6 [912 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main s390x libpipeline1 s390x 1.5.3-1 [28.7 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main s390x man-db s390x 2.9.4-2 [1168 kB] Get:7 http://ftpmaster.internal/ubuntu impish/main s390x libelf1 s390x 0.183-8 [54.7 kB] Get:8 http://ftpmaster.internal/ubuntu impish/main s390x libexpat1 s390x 2.2.10-2 [86.8 kB] Get:9 http://ftpmaster.internal/ubuntu impish/main s390x libicu67 s390x 67.1-6ubuntu2 [8483 kB] Get:10 http://ftpmaster.internal/ubuntu impish/main s390x libxml2 s390x 2.9.10+dfsg-6.3build2 [615 kB] Get:11 http://ftpmaster.internal/ubuntu impish/main s390x libmagic-mgc s390x 1:5.39-3 [229 kB] Get:12 http://ftpmaster.internal/ubuntu impish/main s390x libmagic1 s390x 1:5.39-3 [83.6 kB] Get:13 http://ftpmaster.internal/ubuntu impish/main s390x file s390x 1:5.39-3 [24.0 kB] Get:14 http://ftpmaster.internal/ubuntu impish/main s390x gettext-base s390x 0.21-3ubuntu2 [41.0 kB] Get:15 http://ftpmaster.internal/ubuntu impish/main s390x libpsl5 s390x 0.21.0-1.2 [53.7 kB] Get:16 http://ftpmaster.internal/ubuntu impish/main s390x libuv1 s390x 1.40.0-1 [78.7 kB] Get:17 http://ftpmaster.internal/ubuntu impish/main s390x libsigsegv2 s390x 2.13-1ubuntu1 [14.2 kB] Get:18 http://ftpmaster.internal/ubuntu impish/main s390x m4 s390x 1.4.18-5 [209 kB] Get:19 http://ftpmaster.internal/ubuntu impish/main s390x autoconf all 2.69-14 [293 kB] Get:20 http://ftpmaster.internal/ubuntu impish/main s390x autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:21 http://ftpmaster.internal/ubuntu impish/main s390x automake all 1:1.16.3-2ubuntu1 [552 kB] Get:22 http://ftpmaster.internal/ubuntu impish/main s390x autopoint all 0.21-3ubuntu2 [422 kB] Get:23 http://ftpmaster.internal/ubuntu impish/main s390x cmake-data all 3.18.4-2ubuntu1 [1705 kB] Get:24 http://ftpmaster.internal/ubuntu impish/main s390x libarchive13 s390x 3.4.3-2 [374 kB] Get:25 http://ftpmaster.internal/ubuntu impish/main s390x libbrotli1 s390x 1.0.9-2build2 [271 kB] Get:26 http://ftpmaster.internal/ubuntu impish/main s390x libroken18-heimdal s390x 7.7.0+dfsg-2 [40.0 kB] Get:27 http://ftpmaster.internal/ubuntu impish/main s390x libasn1-8-heimdal s390x 7.7.0+dfsg-2 [148 kB] Get:28 http://ftpmaster.internal/ubuntu impish/main s390x libheimbase1-heimdal s390x 7.7.0+dfsg-2 [27.7 kB] Get:29 http://ftpmaster.internal/ubuntu impish/main s390x libhcrypto4-heimdal s390x 7.7.0+dfsg-2 [83.1 kB] Get:30 http://ftpmaster.internal/ubuntu impish/main s390x libwind0-heimdal s390x 7.7.0+dfsg-2 [47.7 kB] Get:31 http://ftpmaster.internal/ubuntu impish/main s390x libhx509-5-heimdal s390x 7.7.0+dfsg-2 [97.9 kB] Get:32 http://ftpmaster.internal/ubuntu impish/main s390x libkrb5-26-heimdal s390x 7.7.0+dfsg-2 [191 kB] Get:33 http://ftpmaster.internal/ubuntu impish/main s390x libheimntlm0-heimdal s390x 7.7.0+dfsg-2 [14.4 kB] Get:34 http://ftpmaster.internal/ubuntu impish/main s390x libgssapi3-heimdal s390x 7.7.0+dfsg-2 [87.2 kB] Get:35 http://ftpmaster.internal/ubuntu impish/main s390x libsasl2-modules-db s390x 2.1.27+dfsg-2ubuntu1 [14.5 kB] Get:36 http://ftpmaster.internal/ubuntu impish/main s390x libsasl2-2 s390x 2.1.27+dfsg-2ubuntu1 [48.8 kB] Get:37 http://ftpmaster.internal/ubuntu impish/main s390x libldap-2.4-2 s390x 2.4.57+dfsg-2ubuntu1 [157 kB] Get:38 http://ftpmaster.internal/ubuntu impish/main s390x libnghttp2-14 s390x 1.43.0-1 [77.6 kB] Get:39 http://ftpmaster.internal/ubuntu impish/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2build2 [50.7 kB] Get:40 http://ftpmaster.internal/ubuntu impish/main s390x libssh-4 s390x 0.9.5-1 [174 kB] Get:41 http://ftpmaster.internal/ubuntu impish/main s390x libcurl4 s390x 7.74.0-1ubuntu2 [279 kB] Get:42 http://ftpmaster.internal/ubuntu impish/main s390x libjsoncpp24 s390x 1.9.4-4 [72.6 kB] Get:43 http://ftpmaster.internal/ubuntu impish/main s390x librhash0 s390x 1.4.1-1 [121 kB] Get:44 http://ftpmaster.internal/ubuntu impish/main s390x cmake s390x 3.18.4-2ubuntu1 [6273 kB] Get:45 http://ftpmaster.internal/ubuntu impish/main s390x libdebhelper-perl all 13.3.4ubuntu1 [61.1 kB] Get:46 http://ftpmaster.internal/ubuntu impish/main s390x libtool all 2.4.6-15 [161 kB] Get:47 http://ftpmaster.internal/ubuntu impish/main s390x dh-autoreconf all 20 [16.1 kB] Get:48 http://ftpmaster.internal/ubuntu impish/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:49 http://ftpmaster.internal/ubuntu impish/main s390x libsub-override-perl all 0.09-2 [9532 B] Get:50 http://ftpmaster.internal/ubuntu impish/main s390x libfile-stripnondeterminism-perl all 1.11.0-1 [17.0 kB] Get:51 http://ftpmaster.internal/ubuntu impish/main s390x dh-strip-nondeterminism all 1.11.0-1 [5236 B] Get:52 http://ftpmaster.internal/ubuntu impish/main s390x libdw1 s390x 0.183-8 [218 kB] Get:53 http://ftpmaster.internal/ubuntu impish/main s390x debugedit s390x 1:0.1-0ubuntu2 [40.3 kB] Get:54 http://ftpmaster.internal/ubuntu impish/main s390x dwz s390x 0.14-1 [110 kB] Get:55 http://ftpmaster.internal/ubuntu impish/main s390x gettext s390x 0.21-3ubuntu2 [869 kB] Get:56 http://ftpmaster.internal/ubuntu impish/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:57 http://ftpmaster.internal/ubuntu impish/main s390x po-debconf all 1.0.21+nmu1 [233 kB] Get:58 http://ftpmaster.internal/ubuntu impish/main s390x debhelper all 13.3.4ubuntu1 [920 kB] Get:59 http://ftpmaster.internal/ubuntu impish/universe s390x hdf5-helpers s390x 1.10.6+repack-2 [13.7 kB] Get:60 http://ftpmaster.internal/ubuntu impish/universe s390x libaec0 s390x 1.0.4-1 [19.5 kB] Get:61 http://ftpmaster.internal/ubuntu impish/main s390x libcurl3-gnutls s390x 7.74.0-1ubuntu2 [274 kB] Get:62 http://ftpmaster.internal/ubuntu impish/main s390x libcurl4-gnutls-dev s390x 7.74.0-1ubuntu2 [350 kB] Get:63 http://ftpmaster.internal/ubuntu impish/main s390x libdeflate0 s390x 1.7-1ubuntu1 [63.9 kB] Get:64 http://ftpmaster.internal/ubuntu impish/main s390x libdeflate-dev s390x 1.7-1ubuntu1 [45.0 kB] Get:65 http://ftpmaster.internal/ubuntu impish-proposed/main s390x libgfortran5 s390x 11.1.0-1ubuntu1 [387 kB] Get:66 http://ftpmaster.internal/ubuntu impish/universe s390x libsz2 s390x 1.0.4-1 [5056 B] Get:67 http://ftpmaster.internal/ubuntu impish/universe s390x libhdf5-103-1 s390x 1.10.6+repack-2 [1001 kB] Get:68 http://ftpmaster.internal/ubuntu impish/universe s390x libhdf5-cpp-103-1 s390x 1.10.6+repack-2 [104 kB] Get:69 http://ftpmaster.internal/ubuntu impish/universe s390x libhdf5-fortran-102 s390x 1.10.6+repack-2 [73.9 kB] Get:70 http://ftpmaster.internal/ubuntu impish/universe s390x libhdf5-hl-100 s390x 1.10.6+repack-2 [49.7 kB] Get:71 http://ftpmaster.internal/ubuntu impish/universe s390x libhdf5-hl-fortran-100 s390x 1.10.6+repack-2 [26.6 kB] Get:72 http://ftpmaster.internal/ubuntu impish/universe s390x libhdf5-hl-cpp-100 s390x 1.10.6+repack-2 [9892 B] Get:73 http://ftpmaster.internal/ubuntu impish/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-2ubuntu6 [165 kB] Get:74 http://ftpmaster.internal/ubuntu impish/main s390x libjpeg-turbo8 s390x 2.0.6-0ubuntu2 [108 kB] Get:75 http://ftpmaster.internal/ubuntu impish/main s390x libjpeg-turbo8-dev s390x 2.0.6-0ubuntu2 [224 kB] Get:76 http://ftpmaster.internal/ubuntu impish/main s390x libjpeg8 s390x 8c-2ubuntu8 [2142 B] Get:77 http://ftpmaster.internal/ubuntu impish/main s390x libjpeg8-dev s390x 8c-2ubuntu8 [1612 B] Get:78 http://ftpmaster.internal/ubuntu impish/main s390x libjpeg-dev s390x 8c-2ubuntu8 [1612 B] Get:79 http://ftpmaster.internal/ubuntu impish/universe s390x libaec-dev s390x 1.0.4-1 [17.5 kB] Get:80 http://ftpmaster.internal/ubuntu impish/universe s390x libhdf5-dev s390x 1.10.6+repack-2 [2264 kB] Get:81 http://ftpmaster.internal/ubuntu impish/universe s390x libhts3 s390x 1.11-4 [355 kB] Get:82 http://ftpmaster.internal/ubuntu impish/main s390x liblzma-dev s390x 5.2.5-1.0build2 [156 kB] Get:83 http://ftpmaster.internal/ubuntu impish/universe s390x libhts-dev s390x 1.11-4 [3937 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 36.3 MB in 2s (14.9 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 12919 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7ubuntu2_s390x.deb ... Unpacking bsdextrautils (2.36.1-7ubuntu2) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../01-libuchardet0_0.0.7-1_s390x.deb ... Unpacking libuchardet0:s390x (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_s390x.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../03-libpipeline1_1.5.3-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_s390x.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libelf1:s390x. Preparing to unpack .../05-libelf1_0.183-8_s390x.deb ... Unpacking libelf1:s390x (0.183-8) ... 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Unpacking libhts3:s390x (1.11-4) ... Selecting previously unselected package liblzma-dev:s390x. Preparing to unpack .../80-liblzma-dev_5.2.5-1.0build2_s390x.deb ... Unpacking liblzma-dev:s390x (5.2.5-1.0build2) ... Selecting previously unselected package libhts-dev:s390x. Preparing to unpack .../81-libhts-dev_1.11-4_s390x.deb ... Unpacking libhts-dev:s390x (1.11-4) ... Selecting previously unselected package sbuild-build-depends-kallisto-dummy. Preparing to unpack .../82-sbuild-build-depends-kallisto-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-kallisto-dummy (0.invalid.0) ... Setting up libexpat1:s390x (2.2.10-2) ... Setting up libpipeline1:s390x (1.5.3-1) ... Setting up libpsl5:s390x (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-7ubuntu2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up hdf5-helpers (1.10.6+repack-2) ... Setting up libicu67:s390x (67.1-6ubuntu2) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4ubuntu1) ... Setting up libbrotli1:s390x (1.0.9-2build2) ... Setting up libnghttp2-14:s390x (1.43.0-1) ... Setting up libmagic1:s390x (1:5.39-3) ... Setting up libdeflate0:s390x (1.7-1ubuntu1) ... Setting up gettext-base (0.21-3ubuntu2) ... Setting up file (1:5.39-3) ... Setting up libaec0:s390x (1.0.4-1) ... Setting up libsasl2-modules-db:s390x (2.1.27+dfsg-2ubuntu1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:s390x (1.40.0-1) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2build2) ... Setting up libsigsegv2:s390x (2.13-1ubuntu1) ... Setting up autopoint (0.21-3ubuntu2) ... Setting up libjpeg-turbo8:s390x (2.0.6-0ubuntu2) ... Setting up libsasl2-2:s390x (2.1.27+dfsg-2ubuntu1) ... Setting up libssh-4:s390x (0.9.5-1) ... Setting up libgfortran5:s390x (11.1.0-1ubuntu1) ... Setting up libroken18-heimdal:s390x (7.7.0+dfsg-2) ... Setting up libjsoncpp24:s390x (1.9.4-4) ... Setting up liblzma-dev:s390x (5.2.5-1.0build2) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-2ubuntu6) ... Setting up librhash0:s390x (1.4.1-1) ... Setting up libuchardet0:s390x (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up cmake-data (3.18.4-2ubuntu1) ... Setting up libdeflate-dev:s390x (1.7-1ubuntu1) ... Setting up libelf1:s390x (0.183-8) ... Setting up libxml2:s390x (2.9.10+dfsg-6.3build2) ... Setting up libsz2:s390x (1.0.4-1) ... Setting up libheimbase1-heimdal:s390x (7.7.0+dfsg-2) ... Setting up libjpeg8:s390x (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up libdw1:s390x (0.183-8) ... Setting up libjpeg-turbo8-dev:s390x (2.0.6-0ubuntu2) ... Setting up gettext (0.21-3ubuntu2) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:s390x (3.4.3-2) ... Setting up libasn1-8-heimdal:s390x (7.7.0+dfsg-2) ... Setting up libaec-dev:s390x (1.0.4-1) ... Setting up m4 (1.4.18-5) ... Setting up libhcrypto4-heimdal:s390x (7.7.0+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libwind0-heimdal:s390x (7.7.0+dfsg-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up libhdf5-103-1:s390x (1.10.6+repack-2) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-6) ... Setting up libhdf5-cpp-103-1:s390x (1.10.6+repack-2) ... Setting up debugedit (1:0.1-0ubuntu2) ... Setting up libjpeg8-dev:s390x (8c-2ubuntu8) ... Setting up libhdf5-hl-100:s390x (1.10.6+repack-2) ... Setting up automake (1:1.16.3-2ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhx509-5-heimdal:s390x (7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libjpeg-dev:s390x (8c-2ubuntu8) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up libhdf5-hl-cpp-100:s390x (1.10.6+repack-2) ... Setting up libhdf5-fortran-102:s390x (1.10.6+repack-2) ... Setting up libhdf5-hl-fortran-100:s390x (1.10.6+repack-2) ... Setting up libkrb5-26-heimdal:s390x (7.7.0+dfsg-2) ... Setting up debhelper (13.3.4ubuntu1) ... Setting up libheimntlm0-heimdal:s390x (7.7.0+dfsg-2) ... Setting up libgssapi3-heimdal:s390x (7.7.0+dfsg-2) ... Setting up libhdf5-dev (1.10.6+repack-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/s390x-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libldap-2.4-2:s390x (2.4.57+dfsg-2ubuntu1) ... Setting up libcurl3-gnutls:s390x (7.74.0-1ubuntu2) ... Setting up libcurl4-gnutls-dev:s390x (7.74.0-1ubuntu2) ... Setting up libcurl4:s390x (7.74.0-1ubuntu2) ... Setting up libhts3:s390x (1.11-4) ... Setting up libhts-dev:s390x (1.11-4) ... Setting up cmake (3.18.4-2ubuntu1) ... Setting up sbuild-build-depends-kallisto-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.33-0ubuntu6) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-142-generic s390x (s390x) Toolchain package versions: binutils_2.36.1-6ubuntu1 dpkg-dev_1.20.9ubuntu1 g++-10_10.3.0-2ubuntu1 gcc-10_10.3.0-2ubuntu1 libc6-dev_2.33-0ubuntu6 libstdc++-10-dev_10.3.0-2ubuntu1 libstdc++6_11.1.0-1ubuntu1 linux-libc-dev_5.11.0-16.17 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1build1 apt_2.3.2 autoconf_2.69-14 automake_1:1.16.3-2ubuntu1 autopoint_0.21-3ubuntu2 autotools-dev_20180224.1+nmu1 base-files_11.1ubuntu2 base-passwd_3.5.49 bash_5.1-2ubuntu1 binutils_2.36.1-6ubuntu1 binutils-common_2.36.1-6ubuntu1 binutils-s390x-linux-gnu_2.36.1-6ubuntu1 bsdextrautils_2.36.1-7ubuntu2 bsdutils_1:2.36.1-7ubuntu2 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu3 ca-certificates_20210119build1 cmake_3.18.4-2ubuntu1 cmake-data_3.18.4-2ubuntu1 coreutils_8.32-4ubuntu2 cpp_4:10.3.0-1ubuntu3 cpp-10_10.3.0-2ubuntu1 dash_0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1 debconf_1.5.76 debhelper_13.3.4ubuntu1 debianutils_4.11.2 debugedit_1:0.1-0ubuntu2 dh-autoreconf_20 dh-strip-nondeterminism_1.11.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.9ubuntu1 dpkg-dev_1.20.9ubuntu1 dwz_0.14-1 e2fsprogs_1.45.7-1ubuntu2 fakeroot_1.25.3-1.1ubuntu2 file_1:5.39-3 findutils_4.8.0-1ubuntu1 g++_4:10.3.0-1ubuntu3 g++-10_10.3.0-2ubuntu1 gcc_4:10.3.0-1ubuntu3 gcc-10_10.3.0-2ubuntu1 gcc-10-base_10.3.0-2ubuntu1 gcc-11-base_11.1.0-1ubuntu1 gettext_0.21-3ubuntu2 gettext-base_0.21-3ubuntu2 gpg_2.2.20-1ubuntu3 gpg-agent_2.2.20-1ubuntu3 gpgconf_2.2.20-1ubuntu3 gpgv_2.2.20-1ubuntu3 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-2ubuntu3 hdf5-helpers_1.10.6+repack-2 hostname_3.23 init_1.60 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu1 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapparmor1_3.0.0-0ubuntu7 libapt-pkg6.0_2.3.2 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2 libargon2-1_0~20171227-0.2build21.04.0 libasan6_11.1.0-1ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-2 libassuan0_2.5.4-1ubuntu1 libatomic1_11.1.0-1ubuntu1 libattr1_1:2.4.48-6build1 libaudit-common_1:3.0-2ubuntu1 libaudit1_1:3.0-2ubuntu1 libbinutils_2.36.1-6ubuntu1 libblkid1_2.36.1-7ubuntu2 libbrotli1_1.0.9-2build2 libbz2-1.0_1.0.8-4ubuntu3 libc-bin_2.33-0ubuntu6 libc-dev-bin_2.33-0ubuntu6 libc6_2.33-0ubuntu6 libc6-dev_2.33-0ubuntu6 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1build1 libcc1-0_11.1.0-1ubuntu1 libcom-err2_1.45.7-1ubuntu2 libcrypt-dev_1:4.4.17-1ubuntu3 libcrypt1_1:4.4.17-1ubuntu3 libcryptsetup12_2:2.3.4-1ubuntu3 libctf-nobfd0_2.36.1-6ubuntu1 libctf0_2.36.1-6ubuntu1 libcurl3-gnutls_7.74.0-1ubuntu2 libcurl4_7.74.0-1ubuntu2 libcurl4-gnutls-dev_7.74.0-1ubuntu2 libdb5.3_5.3.28+dfsg1-0.6ubuntu4 libdebconfclient0_0.256ubuntu3 libdebhelper-perl_13.3.4ubuntu1 libdeflate-dev_1.7-1ubuntu1 libdeflate0_1.7-1ubuntu1 libdevmapper1.02.1_2:1.02.175-2ubuntu4 libdpkg-perl_1.20.9ubuntu1 libdw1_0.183-8 libelf1_0.183-8 libexpat1_2.2.10-2 libext2fs2_1.45.7-1ubuntu2 libfakeroot_1.25.3-1.1ubuntu2 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu5 libfile-stripnondeterminism-perl_1.11.0-1 libgcc-10-dev_10.3.0-2ubuntu1 libgcc-s1_11.1.0-1ubuntu1 libgcrypt20_1.8.7-2ubuntu2 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgfortran5_11.1.0-1ubuntu1 libgmp10_2:6.2.1+dfsg-1ubuntu2 libgnutls30_3.7.1-3ubuntu1 libgomp1_11.1.0-1ubuntu1 libgpg-error0_1.38-2build1 libgssapi-krb5-2_1.18.3-5 libgssapi3-heimdal_7.7.0+dfsg-2 libhcrypto4-heimdal_7.7.0+dfsg-2 libhdf5-103-1_1.10.6+repack-2 libhdf5-cpp-103-1_1.10.6+repack-2 libhdf5-dev_1.10.6+repack-2 libhdf5-fortran-102_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libheimbase1-heimdal_7.7.0+dfsg-2 libheimntlm0-heimdal_7.7.0+dfsg-2 libhogweed6_3.7-2.1ubuntu1 libhts-dev_1.11-4 libhts3_1.11-4 libhx509-5-heimdal_7.7.0+dfsg-2 libicu67_67.1-6ubuntu2 libidn2-0_2.3.0-5 libip4tc2_1.8.7-1ubuntu2 libisl23_0.23-1build1 libitm1_11.1.0-1ubuntu1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.6-0ubuntu2 libjpeg-turbo8-dev_2.0.6-0ubuntu2 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c5_0.15-2build2 libjsoncpp24_1.9.4-4 libk5crypto3_1.18.3-5 libkeyutils1_1.6.1-2ubuntu1 libkmod2_28-1ubuntu2 libkrb5-26-heimdal_7.7.0+dfsg-2 libkrb5-3_1.18.3-5 libkrb5support0_1.18.3-5 libldap-2.4-2_2.4.57+dfsg-2ubuntu1 liblockfile-bin_1.17-1 liblockfile1_1.17-1 liblz4-1_1.9.3-1build1 liblzma-dev_5.2.5-1.0build2 liblzma5_5.2.5-1.0build2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-7ubuntu2 libmpc3_1.2.0-1build1 libmpfr6_4.1.0-3build1 libncurses6_6.2+20201114-2build1 libncursesw6_6.2+20201114-2build1 libnettle8_3.7-2.1ubuntu1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libp11-kit0_0.23.22-1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpcre2-8-0_10.36-2ubuntu5 libpcre3_2:8.39-13build3 libperl5.32_5.32.1-3ubuntu2 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3build3 libprocps8_2:3.3.16-5ubuntu3 libpsl5_0.21.0-1.2 libreadline8_8.1-1 librhash0_1.4.1-1 libroken18-heimdal_7.7.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2build2 libsasl2-2_2.1.27+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27+dfsg-2ubuntu1 libseccomp2_2.5.1-1ubuntu1 libselinux1_3.1-3build1 libsemanage-common_3.1-1ubuntu1 libsemanage1_3.1-1ubuntu1 libsepol1_3.1-1ubuntu1 libsigsegv2_2.13-1ubuntu1 libsmartcols1_2.36.1-7ubuntu2 libsqlite3-0_3.34.1-3 libss2_1.45.7-1ubuntu2 libssh-4_0.9.5-1 libssl1.1_1.1.1j-1ubuntu3 libstdc++-10-dev_10.3.0-2ubuntu1 libstdc++6_11.1.0-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_247.3-3ubuntu3 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2build1 libtirpc-common_1.3.1-1build1 libtirpc-dev_1.3.1-1build1 libtirpc3_1.3.1-1build1 libtool_2.4.6-15 libubsan1_11.1.0-1ubuntu1 libuchardet0_0.0.7-1 libudev1_247.3-3ubuntu3 libunistring2_0.9.10-4 libuuid1_2.36.1-7ubuntu2 libuv1_1.40.0-1 libwind0-heimdal_7.7.0+dfsg-2 libxml2_2.9.10+dfsg-6.3build2 libxxhash0_0.8.0-2 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.11.0-16.17 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu8 logsave_1.45.7-1ubuntu2 lsb-base_11.1.0ubuntu2 lto-disabled-list_7 m4_1.4.18-5 make_4.3-4ubuntu1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-7ubuntu2 ncurses-base_6.2+20201114-2build1 ncurses-bin_6.2+20201114-2build1 openssl_1.1.1j-1ubuntu3 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu8 patch_2.7.6-7 perl_5.32.1-3ubuntu2 perl-base_5.32.1-3ubuntu2 perl-modules-5.32_5.32.1-3ubuntu2 pinentry-curses_1.1.0-4build1 pkgbinarymangler_147 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu3 readline-common_8.1-1 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kallisto-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.14 systemd_247.3-3ubuntu3 systemd-sysv_247.3-3ubuntu3 systemd-timesyncd_247.3-3ubuntu3 sysvinit-utils_2.96-7ubuntu1 tar_1.34+dfsg-1build1 tzdata_2021a-1ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_24ubuntu3 util-linux_2.36.1-7ubuntu2 xz-utils_5.2.5-1.0build2 zlib1g_1:1.2.11.dfsg-2ubuntu6 zlib1g-dev_1:1.2.11.dfsg-2ubuntu6 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Mar 4 18:30:33 2021 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kallisto_0.46.2+dfsg-3.dsc dpkg-source: info: extracting kallisto in /<>/kallisto-0.46.2+dfsg dpkg-source: info: unpacking kallisto_0.46.2+dfsg.orig.tar.xz dpkg-source: info: unpacking kallisto_0.46.2+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_htslib.patch dpkg-source: info: applying spelling dpkg-source: info: applying htslib1.3 dpkg-source: info: applying Check_busOptions.seq_length_before_accessing.patch dpkg-source: info: applying gcc11.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-21475503 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-21475503 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-21475503 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package kallisto dpkg-buildpackage: info: source version 0.46.2+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/kallisto-0.46.2+dfsg' dh_auto_configure -- -DDEBIAN_BUILD=1 -DLINK=shared cd obj-s390x-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/s390x-linux-gnu -DDEBIAN_BUILD=1 -DLINK=shared .. -- The C compiler identification is GNU 10.3.0 -- The CXX compiler identification is GNU 10.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done shared build -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found ZLIB: /usr/lib/s390x-linux-gnu/libz.so (found version "1.2.11") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu make[1]: Leaving directory '/<>/kallisto-0.46.2+dfsg' dh_auto_build -a cd obj-s390x-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' /usr/bin/cmake -S/<>/kallisto-0.46.2+dfsg -B/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/CMakeFiles /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/depend make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.46.2+dfsg /<>/kallisto-0.46.2+dfsg/src /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/kallisto_core.dir/DependInfo.cmake --color= Dependee "/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/kallisto_core.dir/DependInfo.cmake" is newer than depender "/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/kallisto_core.dir/depend.internal". Dependee "/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/kallisto_core.dir/depend.internal". Scanning dependencies of target kallisto_core make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/build make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' [ 4%] Building CXX object src/CMakeFiles/kallisto_core.dir/BUSTools.cpp.o [ 9%] Building CXX object src/CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/BUSTools.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/BUSTools.cpp cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/Bootstrap.cpp [ 14%] Building CXX object src/CMakeFiles/kallisto_core.dir/BUSData.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/BUSData.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/BUSData.cpp [ 19%] Building CXX object src/CMakeFiles/kallisto_core.dir/GeneModel.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/GeneModel.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/GeneModel.cpp [ 23%] Building CXX object src/CMakeFiles/kallisto_core.dir/H5Writer.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/H5Writer.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/H5Writer.cpp [ 28%] Building CXX object src/CMakeFiles/kallisto_core.dir/Kmer.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/Kmer.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/Kmer.cpp [ 33%] Building CXX object src/CMakeFiles/kallisto_core.dir/KmerIndex.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/KmerIndex.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/KmerIndex.cpp [ 38%] Building CXX object src/CMakeFiles/kallisto_core.dir/KmerIterator.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/KmerIterator.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/KmerIterator.cpp [ 42%] Building CXX object src/CMakeFiles/kallisto_core.dir/Merge.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/Merge.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/Merge.cpp [ 47%] Building CXX object src/CMakeFiles/kallisto_core.dir/MinCollector.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/MinCollector.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/MinCollector.cpp [ 52%] Building CXX object src/CMakeFiles/kallisto_core.dir/PlaintextWriter.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/PlaintextWriter.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/PlaintextWriter.cpp [ 57%] Building CXX object src/CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/ProcessReads.cpp [ 61%] Building CXX object src/CMakeFiles/kallisto_core.dir/PseudoBam.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/PseudoBam.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/PseudoBam.cpp [ 66%] Building CXX object src/CMakeFiles/kallisto_core.dir/common.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/common.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/common.cpp [ 71%] Building CXX object src/CMakeFiles/kallisto_core.dir/h5utils.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/h5utils.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/h5utils.cpp [ 76%] Building CXX object src/CMakeFiles/kallisto_core.dir/hash.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/hash.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/hash.cpp [ 80%] Building CXX object src/CMakeFiles/kallisto_core.dir/main.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/main.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/main.cpp [ 85%] Building CXX object src/CMakeFiles/kallisto_core.dir/weights.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/weights.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/weights.cpp [ 90%] Linking CXX static library libkallisto_core.a cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/kallisto_core.dir/cmake_clean_target.cmake cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kallisto_core.dir/link.txt --verbose=1 /usr/bin/ar qc libkallisto_core.a CMakeFiles/kallisto_core.dir/BUSData.cpp.o CMakeFiles/kallisto_core.dir/BUSTools.cpp.o CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o CMakeFiles/kallisto_core.dir/GeneModel.cpp.o CMakeFiles/kallisto_core.dir/H5Writer.cpp.o CMakeFiles/kallisto_core.dir/Kmer.cpp.o CMakeFiles/kallisto_core.dir/KmerIndex.cpp.o CMakeFiles/kallisto_core.dir/KmerIterator.cpp.o CMakeFiles/kallisto_core.dir/Merge.cpp.o CMakeFiles/kallisto_core.dir/MinCollector.cpp.o CMakeFiles/kallisto_core.dir/PlaintextWriter.cpp.o CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o CMakeFiles/kallisto_core.dir/PseudoBam.cpp.o CMakeFiles/kallisto_core.dir/common.cpp.o CMakeFiles/kallisto_core.dir/h5utils.cpp.o CMakeFiles/kallisto_core.dir/hash.cpp.o CMakeFiles/kallisto_core.dir/main.cpp.o CMakeFiles/kallisto_core.dir/weights.cpp.o /usr/bin/ranlib libkallisto_core.a make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' [ 90%] Built target kallisto_core make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/depend make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.46.2+dfsg /<>/kallisto-0.46.2+dfsg/src /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/kallisto.dir/DependInfo.cmake --color= Dependee "/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/kallisto.dir/DependInfo.cmake" is newer than depender "/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/kallisto.dir/depend.internal". Dependee "/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/kallisto.dir/depend.internal". Scanning dependencies of target kallisto make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/build make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' [ 95%] Building CXX object src/CMakeFiles/kallisto.dir/main.cpp.o cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/<>/kallisto-0.46.2+dfsg/src -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto.dir/main.cpp.o -c /<>/kallisto-0.46.2+dfsg/src/main.cpp [100%] Linking CXX executable kallisto cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kallisto.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>/kallisto-0.46.2+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/kallisto.dir/main.cpp.o -o kallisto libkallisto_core.a -lpthread -lhts libkallisto_core.a -lz -lrt make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' [100%] Built target kallisto make[2]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-s390x-linux-gnu && make -j4 install DESTDIR=/<>/kallisto-0.46.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' /usr/bin/cmake -S/<>/kallisto-0.46.2+dfsg -B/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/CMakeFiles /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/depend make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.46.2+dfsg /<>/kallisto-0.46.2+dfsg/src /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/kallisto_core.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/build make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/kallisto_core.dir/build'. make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' [ 90%] Built target kallisto_core make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/depend make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' cd /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.46.2+dfsg /<>/kallisto-0.46.2+dfsg/src /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/kallisto.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/build make[3]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/kallisto.dir/build'. make[3]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' [100%] Built target kallisto make[2]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/kallisto-0.46.2+dfsg/debian/tmp/usr/bin/kallisto make[1]: Leaving directory '/<>/kallisto-0.46.2+dfsg/obj-s390x-linux-gnu' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a e58bf0a6b346554433c1bf6b1588cfdb363297f5 dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 147 INFO: pkgstriptranslations version 147 pkgstriptranslations: processing kallisto (in debian/kallisto); do_strip: , oemstrip: pkgstriptranslations: processing kallisto-dbgsym (in debian/.debhelper/kallisto/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/kallisto/DEBIAN/control, package kallisto, directory debian/kallisto pkgstripfiles: processing control file: debian/.debhelper/kallisto/dbgsym-root/DEBIAN/control, package kallisto-dbgsym, directory debian/.debhelper/kallisto/dbgsym-root dpkg-deb: building package 'kallisto-dbgsym' in 'debian/.debhelper/scratch-space/build-kallisto/kallisto-dbgsym_0.46.2+dfsg-3_s390x.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package kallisto ... pkgstripfiles: No PNG files. dpkg-deb: building package 'kallisto' in '../kallisto_0.46.2+dfsg-3_s390x.deb'. Renaming kallisto-dbgsym_0.46.2+dfsg-3_s390x.deb to kallisto-dbgsym_0.46.2+dfsg-3_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../kallisto_0.46.2+dfsg-3_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-04-29T13:11:16Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kallisto_0.46.2+dfsg-3_s390x.changes: ------------------------------------- Format: 1.8 Date: Thu, 04 Mar 2021 23:54:34 +0530 Source: kallisto Binary: kallisto Built-For-Profiles: noudeb Architecture: s390x Version: 0.46.2+dfsg-3 Distribution: impish-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Nilesh Patra Description: kallisto - near-optimal RNA-Seq quantification Closes: 984073 Changes: kallisto (0.46.2+dfsg-3) unstable; urgency=medium . * Team Upload. * debian/patches/gcc11.patch: Fix gcc-11 FTBFS (Closes: #984073) Checksums-Sha1: d8043721c991797e823457ebf43a6441e6025ac0 3333384 kallisto-dbgsym_0.46.2+dfsg-3_s390x.ddeb ed15973fc19d18a5dff621241281e8aade6ac3f0 7839 kallisto_0.46.2+dfsg-3_s390x.buildinfo 27f6631026aa5cbce877e469cb8d40d0250a507c 211984 kallisto_0.46.2+dfsg-3_s390x.deb Checksums-Sha256: 50c1a253ba18f4d486917933bc29eda92f4b56755e05ce01e02035e4051372d2 3333384 kallisto-dbgsym_0.46.2+dfsg-3_s390x.ddeb aacf5cf6b4e51370ed40d4bde2c257aabdc2f2a78440f5ae8a461989b824e037 7839 kallisto_0.46.2+dfsg-3_s390x.buildinfo 9fbe69c128c14fcd7ebbd422d0d6aaabddea0c457ccc26d45ac294b8ad96f3d3 211984 kallisto_0.46.2+dfsg-3_s390x.deb Files: 8fff3a966f660aa2f470b7430d7f243a 3333384 debug optional kallisto-dbgsym_0.46.2+dfsg-3_s390x.ddeb 20f696445986652ba85df6ed42ab4c64 7839 science optional kallisto_0.46.2+dfsg-3_s390x.buildinfo 6671bd1581c33fd2c130160e10a1a674 211984 science optional kallisto_0.46.2+dfsg-3_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: kallisto Binary: kallisto kallisto-dbgsym Architecture: s390x Version: 0.46.2+dfsg-3 Checksums-Md5: 8fff3a966f660aa2f470b7430d7f243a 3333384 kallisto-dbgsym_0.46.2+dfsg-3_s390x.ddeb 6671bd1581c33fd2c130160e10a1a674 211984 kallisto_0.46.2+dfsg-3_s390x.deb Checksums-Sha1: d8043721c991797e823457ebf43a6441e6025ac0 3333384 kallisto-dbgsym_0.46.2+dfsg-3_s390x.ddeb 27f6631026aa5cbce877e469cb8d40d0250a507c 211984 kallisto_0.46.2+dfsg-3_s390x.deb Checksums-Sha256: 50c1a253ba18f4d486917933bc29eda92f4b56755e05ce01e02035e4051372d2 3333384 kallisto-dbgsym_0.46.2+dfsg-3_s390x.ddeb 9fbe69c128c14fcd7ebbd422d0d6aaabddea0c457ccc26d45ac294b8ad96f3d3 211984 kallisto_0.46.2+dfsg-3_s390x.deb Build-Origin: Ubuntu Build-Architecture: s390x Build-Date: Thu, 29 Apr 2021 13:11:15 +0000 Build-Path: /<>/kallisto-0.46.2+dfsg Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-14), automake (= 1:1.16.3-2ubuntu1), autopoint (= 0.21-3ubuntu2), autotools-dev (= 20180224.1+nmu1), base-files (= 11.1ubuntu2), base-passwd (= 3.5.49), bash (= 5.1-2ubuntu1), binutils (= 2.36.1-6ubuntu1), binutils-common (= 2.36.1-6ubuntu1), binutils-s390x-linux-gnu (= 2.36.1-6ubuntu1), bsdextrautils (= 2.36.1-7ubuntu2), bsdutils (= 1:2.36.1-7ubuntu2), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu3), cmake (= 3.18.4-2ubuntu1), cmake-data (= 3.18.4-2ubuntu1), coreutils (= 8.32-4ubuntu2), cpp (= 4:10.3.0-1ubuntu3), cpp-10 (= 10.3.0-2ubuntu1), dash (= 0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1), debconf (= 1.5.76), debhelper (= 13.3.4ubuntu1), debianutils (= 4.11.2), debugedit (= 1:0.1-0ubuntu2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.11.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.9ubuntu1), dpkg-dev (= 1.20.9ubuntu1), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1ubuntu1), g++ (= 4:10.3.0-1ubuntu3), g++-10 (= 10.3.0-2ubuntu1), gcc (= 4:10.3.0-1ubuntu3), gcc-10 (= 10.3.0-2ubuntu1), gcc-10-base (= 10.3.0-2ubuntu1), gcc-11-base (= 11.1.0-1ubuntu1), gettext (= 0.21-3ubuntu2), gettext-base (= 0.21-3ubuntu2), grep (= 3.6-1), groff-base (= 1.22.4-6), gzip (= 1.10-2ubuntu3), hdf5-helpers (= 1.10.6+repack-2), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu1), libaec-dev (= 1.0.4-1), libaec0 (= 1.0.4-1), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.4.3-2), libasan6 (= 11.1.0-1ubuntu1), libasn1-8-heimdal (= 7.7.0+dfsg-2), libatomic1 (= 11.1.0-1ubuntu1), libattr1 (= 1:2.4.48-6build1), libaudit-common (= 1:3.0-2ubuntu1), libaudit1 (= 1:3.0-2ubuntu1), libbinutils (= 2.36.1-6ubuntu1), libblkid1 (= 2.36.1-7ubuntu2), libbrotli1 (= 1.0.9-2build2), libbz2-1.0 (= 1.0.8-4ubuntu3), libc-bin (= 2.33-0ubuntu6), libc-dev-bin (= 2.33-0ubuntu6), libc6 (= 2.33-0ubuntu6), libc6-dev (= 2.33-0ubuntu6), libcap-ng0 (= 0.7.9-2.2build1), libcap2 (= 1:2.44-1build1), libcc1-0 (= 11.1.0-1ubuntu1), libcom-err2 (= 1.45.7-1ubuntu2), libcrypt-dev (= 1:4.4.17-1ubuntu3), libcrypt1 (= 1:4.4.17-1ubuntu3), libctf-nobfd0 (= 2.36.1-6ubuntu1), libctf0 (= 2.36.1-6ubuntu1), libcurl3-gnutls (= 7.74.0-1ubuntu2), libcurl4 (= 7.74.0-1ubuntu2), libcurl4-gnutls-dev (= 7.74.0-1ubuntu2), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu4), libdebconfclient0 (= 0.256ubuntu3), libdebhelper-perl (= 13.3.4ubuntu1), libdeflate-dev (= 1.7-1ubuntu1), libdeflate0 (= 1.7-1ubuntu1), libdpkg-perl (= 1.20.9ubuntu1), libdw1 (= 0.183-8), libelf1 (= 0.183-8), libexpat1 (= 2.2.10-2), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu5), libfile-stripnondeterminism-perl (= 1.11.0-1), libgcc-10-dev (= 10.3.0-2ubuntu1), libgcc-s1 (= 11.1.0-1ubuntu1), libgcrypt20 (= 1.8.7-2ubuntu2), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libgfortran5 (= 11.1.0-1ubuntu1), libgmp10 (= 2:6.2.1+dfsg-1ubuntu2), libgnutls30 (= 3.7.1-3ubuntu1), libgomp1 (= 11.1.0-1ubuntu1), libgpg-error0 (= 1.38-2build1), libgssapi-krb5-2 (= 1.18.3-5), libgssapi3-heimdal (= 7.7.0+dfsg-2), libhcrypto4-heimdal (= 7.7.0+dfsg-2), libhdf5-103-1 (= 1.10.6+repack-2), libhdf5-cpp-103-1 (= 1.10.6+repack-2), libhdf5-dev (= 1.10.6+repack-2), libhdf5-fortran-102 (= 1.10.6+repack-2), libhdf5-hl-100 (= 1.10.6+repack-2), libhdf5-hl-cpp-100 (= 1.10.6+repack-2), libhdf5-hl-fortran-100 (= 1.10.6+repack-2), libheimbase1-heimdal (= 7.7.0+dfsg-2), libheimntlm0-heimdal (= 7.7.0+dfsg-2), libhogweed6 (= 3.7-2.1ubuntu1), libhts-dev (= 1.11-4), libhts3 (= 1.11-4), libhx509-5-heimdal (= 7.7.0+dfsg-2), libicu67 (= 67.1-6ubuntu2), libidn2-0 (= 2.3.0-5), libisl23 (= 0.23-1build1), libitm1 (= 11.1.0-1ubuntu1), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.0.6-0ubuntu2), libjpeg-turbo8-dev (= 2.0.6-0ubuntu2), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libjsoncpp24 (= 1.9.4-4), libk5crypto3 (= 1.18.3-5), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-26-heimdal (= 7.7.0+dfsg-2), libkrb5-3 (= 1.18.3-5), libkrb5support0 (= 1.18.3-5), libldap-2.4-2 (= 2.4.57+dfsg-2ubuntu1), liblz4-1 (= 1.9.3-1build1), liblzma-dev (= 5.2.5-1.0build2), liblzma5 (= 5.2.5-1.0build2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.36.1-7ubuntu2), libmpc3 (= 1.2.0-1build1), libmpfr6 (= 4.1.0-3build1), libncurses6 (= 6.2+20201114-2build1), libncursesw6 (= 6.2+20201114-2build1), libnettle8 (= 3.7-2.1ubuntu1), libnghttp2-14 (= 1.43.0-1), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libp11-kit0 (= 0.23.22-1), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpcre2-8-0 (= 10.36-2ubuntu5), libpcre3 (= 2:8.39-13build3), libperl5.32 (= 5.32.1-3ubuntu2), libpipeline1 (= 1.5.3-1), libprocps8 (= 2:3.3.16-5ubuntu3), libpsl5 (= 0.21.0-1.2), librhash0 (= 1.4.1-1), libroken18-heimdal (= 7.7.0+dfsg-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build2), libsasl2-2 (= 2.1.27+dfsg-2ubuntu1), libsasl2-modules-db (= 2.1.27+dfsg-2ubuntu1), libseccomp2 (= 2.5.1-1ubuntu1), libselinux1 (= 3.1-3build1), libsigsegv2 (= 2.13-1ubuntu1), libsmartcols1 (= 2.36.1-7ubuntu2), libsqlite3-0 (= 3.34.1-3), libssh-4 (= 0.9.5-1), libssl1.1 (= 1.1.1j-1ubuntu3), libstdc++-10-dev (= 10.3.0-2ubuntu1), libstdc++6 (= 11.1.0-1ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.3-3ubuntu3), libsz2 (= 1.0.4-1), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20201114-2build1), libtirpc-common (= 1.3.1-1build1), libtirpc-dev (= 1.3.1-1build1), libtirpc3 (= 1.3.1-1build1), libtool (= 2.4.6-15), libubsan1 (= 11.1.0-1ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 247.3-3ubuntu3), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-7ubuntu2), libuv1 (= 1.40.0-1), libwind0-heimdal (= 7.7.0+dfsg-2), libxml2 (= 2.9.10+dfsg-6.3build2), libzstd1 (= 1.4.8+dfsg-2.1), linux-libc-dev (= 5.11.0-16.17), login (= 1:4.8.1-1ubuntu8), lsb-base (= 11.1.0ubuntu2), lto-disabled-list (= 7), m4 (= 1.4.18-5), make (= 4.3-4ubuntu1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-2build1), ncurses-bin (= 6.2+20201114-2build1), patch (= 2.7.6-7), perl (= 5.32.1-3ubuntu2), perl-base (= 5.32.1-3ubuntu2), perl-modules-5.32 (= 5.32.1-3ubuntu2), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.16-5ubuntu3), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-7ubuntu1), tar (= 1.34+dfsg-1build1), util-linux (= 2.36.1-7ubuntu2), xz-utils (= 5.2.5-1.0build2), zlib1g (= 1:1.2.11.dfsg-2ubuntu6), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu6) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1614882274" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kallisto_0.46.2+dfsg-3_s390x.deb -------------------------------- new Debian package, version 2.0. size 211984 bytes: control archive=1164 bytes. 1376 bytes, 24 lines control 264 bytes, 4 lines md5sums Package: kallisto Version: 0.46.2+dfsg-3 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 602 Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.3.1), libhts3 (>= 1.10), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://pachterlab.github.io/kallisto Description: near-optimal RNA-Seq quantification Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools. drwxr-xr-x root/root 0 2021-03-04 18:24 ./ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/bin/ -rwxr-xr-x root/root 603600 2021-03-04 18:24 ./usr/bin/kallisto drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/share/ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-03-04 18:24 ./usr/share/doc/kallisto/ -rw-r--r-- root/root 323 2021-03-04 16:50 ./usr/share/doc/kallisto/README.test -rw-r--r-- root/root 754 2021-03-04 18:24 ./usr/share/doc/kallisto/changelog.Debian.gz -rw-r--r-- root/root 2910 2021-03-04 16:50 ./usr/share/doc/kallisto/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: n/a Build-Time: 31 Distribution: impish-proposed Host Architecture: s390x Install-Time: 10 Job: kallisto_0.46.2+dfsg-3.dsc Machine Architecture: s390x Package: kallisto Package-Time: 42 Source-Version: 0.46.2+dfsg-3 Space: n/a Status: successful Version: 0.46.2+dfsg-3 -------------------------------------------------------------------------------- Finished at 2021-04-29T13:11:16Z Build needed 00:00:42, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=impish --arch=s390x PACKAGEBUILD-21475503 Scanning for processes to kill in build PACKAGEBUILD-21475503