https://launchpad.net/ubuntu/+source/kineticstools/0.6.1+git20210811.276ca9c+dfsg-1/+build/22337708 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-012 4.15.0-161-generic #169-Ubuntu SMP Fri Oct 15 13:41:12 UTC 2021 aarch64 Buildd toolchain package versions: launchpad-buildd_203~505~ubuntu18.04.1 python3-lpbuildd_203~505~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 26 Oct 05:20:41 ntpdate[1739]: adjust time server 10.211.37.1 offset -0.002453 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22337708 --image-type chroot /home/buildd/filecache-default/d7d0133902b8cc1df688a841d4b96e994eeac2e0 Creating target for build PACKAGEBUILD-22337708 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22337708 Starting target for build PACKAGEBUILD-22337708 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22337708 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22337708 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22337708 Updating target for build PACKAGEBUILD-22337708 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [224 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main arm64 Packages [1371 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe arm64 Packages [12.9 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5506 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 Packages [337 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [115 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 Packages [1807 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [882 kB] Fetched 23.9 MB in 36s (664 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt bsdutils ca-certificates cpp-11 dash debconf debianutils g++-11 gcc-11 gcc-11-base libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libblkid1 libcc1-0 libgcc-11-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgomp1 libgpg-error0 libgssapi-krb5-2 libhwasan0 libidn2-0 libisl23 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 liblsan0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libseccomp2 libselinux1 libsmartcols1 libsqlite3-0 libstdc++-11-dev libstdc++6 libtasn1-6 libtinfo6 libtsan0 libubsan1 libuuid1 libzstd1 lockfile-progs make mount ncurses-base ncurses-bin sensible-utils tzdata util-linux 57 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 182 MB of archives. After this operation, 34.8 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 bsdutils arm64 1:2.36.1-8ubuntu2 [81.0 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 debianutils arm64 5.5-1 [77.5 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 debconf all 1.5.78 [126 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 dash arm64 0.5.11+git20210120+802ebd4-2 [92.1 kB] Get:5 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libncursesw6 arm64 6.2+20210905-1 [142 kB] Get:6 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libncurses6 arm64 6.2+20210905-1 [108 kB] Get:7 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libtinfo6 arm64 6.2+20210905-1 [104 kB] Get:8 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 ncurses-bin arm64 6.2+20210905-1 [180 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 util-linux arm64 2.36.1-8ubuntu2 [1004 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 ncurses-base all 6.2+20210905-1 [19.9 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libcc1-0 arm64 11.2.0-10ubuntu1 [54.2 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 gcc-11-base arm64 11.2.0-10ubuntu1 [21.0 kB] Get:13 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libgcc-s1 arm64 11.2.0-10ubuntu1 [39.3 kB] Get:14 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libgomp1 arm64 11.2.0-10ubuntu1 [115 kB] Get:15 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libitm1 arm64 11.2.0-10ubuntu1 [28.4 kB] Get:16 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libatomic1 arm64 11.2.0-10ubuntu1 [10.9 kB] Get:17 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libasan6 arm64 11.2.0-10ubuntu1 [2228 kB] Get:18 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 liblsan0 arm64 11.2.0-10ubuntu1 [942 kB] Get:19 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libtsan0 arm64 11.2.0-10ubuntu1 [2233 kB] Get:20 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libubsan1 arm64 11.2.0-10ubuntu1 [908 kB] Get:21 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libhwasan0 arm64 11.2.0-10ubuntu1 [1010 kB] Get:22 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 g++-11 arm64 11.2.0-10ubuntu1 [54.4 MB] Get:23 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libstdc++-11-dev arm64 11.2.0-10ubuntu1 [2064 kB] Get:24 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libgcc-11-dev arm64 11.2.0-10ubuntu1 [1149 kB] Get:25 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 gcc-11 arm64 11.2.0-10ubuntu1 [58.3 MB] Get:26 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 cpp-11 arm64 11.2.0-10ubuntu1 [50.0 MB] Get:27 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libstdc++6 arm64 11.2.0-10ubuntu1 [623 kB] Get:28 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libisl23 arm64 0.24-2 [690 kB] Get:29 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libmpc3 arm64 1.2.1-1 [48.1 kB] Get:30 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libzstd1 arm64 1.4.8+dfsg-3 [311 kB] Get:31 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libapt-pkg6.0 arm64 2.3.11 [864 kB] Get:32 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libseccomp2 arm64 2.5.1-1ubuntu2 [47.8 kB] Get:33 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 apt arm64 2.3.11 [1356 kB] Get:34 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 mount arm64 2.36.1-8ubuntu2 [109 kB] Get:35 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libattr1 arm64 1:2.5.1-1 [13.3 kB] Get:36 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libblkid1 arm64 2.36.1-8ubuntu2 [97.8 kB] Get:37 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libgpg-error0 arm64 1.42-3 [67.7 kB] Get:38 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libk5crypto3 arm64 1.18.3-7 [91.5 kB] Get:39 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libkrb5support0 arm64 1.18.3-7 [32.3 kB] Get:40 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libkrb5-3 arm64 1.18.3-7 [357 kB] Get:41 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libgssapi-krb5-2 arm64 1.18.3-7 [141 kB] Get:42 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libselinux1 arm64 3.1-3build3 [74.1 kB] Get:43 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libmount1 arm64 2.36.1-8ubuntu2 [115 kB] Get:44 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libsmartcols1 arm64 2.36.1-8ubuntu2 [48.5 kB] Get:45 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libuuid1 arm64 2.36.1-8ubuntu2 [23.2 kB] Get:46 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libidn2-0 arm64 2.3.2-2 [67.1 kB] Get:47 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libp11-kit0 arm64 0.24.0-5 [231 kB] Get:48 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libtasn1-6 arm64 4.17.0-2 [42.8 kB] Get:49 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 sensible-utils all 0.0.17 [20.1 kB] Get:50 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 ca-certificates all 20211016 [148 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main arm64 libapparmor1 arm64 3.0.3-0ubuntu2 [37.4 kB] Get:52 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libsqlite3-0 arm64 3.36.0-2 [638 kB] Get:53 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 tzdata all 2021e-1ubuntu1 [343 kB] Get:54 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libgdbm6 arm64 1.22-1 [35.1 kB] Get:55 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libgdbm-compat4 arm64 1.22-1 [6370 B] Get:56 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 lockfile-progs arm64 0.1.19 [9778 B] Get:57 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 make arm64 4.3-4ubuntu2 [176 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 182 MB in 1min 7s (2725 kB/s) (Reading database ... 13240 files and directories currently installed.) 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Preparing to unpack .../7-lockfile-progs_0.1.19_arm64.deb ... Unpacking lockfile-progs (0.1.19) over (0.1.18build1) ... Preparing to unpack .../8-make_4.3-4ubuntu2_arm64.deb ... Unpacking make (4.3-4ubuntu2) over (4.3-4ubuntu1) ... Setting up libapparmor1:arm64 (3.0.3-0ubuntu2) ... Setting up libsqlite3-0:arm64 (3.36.0-2) ... Setting up libgomp1:arm64 (11.2.0-10ubuntu1) ... Setting up libasan6:arm64 (11.2.0-10ubuntu1) ... Setting up tzdata (2021e-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Oct 26 05:23:04 UTC 2021. Universal Time is now: Tue Oct 26 05:23:04 UTC 2021. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 7 added, 8 removed; done. Setting up make (4.3-4ubuntu2) ... Setting up libncurses6:arm64 (6.2+20210905-1) ... Setting up libmpc3:arm64 (1.2.1-1) ... Setting up lockfile-progs (0.1.19) ... Setting up libatomic1:arm64 (11.2.0-10ubuntu1) ... Setting up libncursesw6:arm64 (6.2+20210905-1) ... Setting up libubsan1:arm64 (11.2.0-10ubuntu1) ... Setting up mount (2.36.1-8ubuntu2) ... Setting up sensible-utils (0.0.17) ... Setting up libhwasan0:arm64 (11.2.0-10ubuntu1) ... Setting up libisl23:arm64 (0.24-2) ... Setting up libcc1-0:arm64 (11.2.0-10ubuntu1) ... Setting up liblsan0:arm64 (11.2.0-10ubuntu1) ... Setting up libitm1:arm64 (11.2.0-10ubuntu1) ... Setting up libgdbm6:arm64 (1.22-1) ... Setting up libtsan0:arm64 (11.2.0-10ubuntu1) ... Setting up cpp-11 (11.2.0-10ubuntu1) ... Setting up libgdbm-compat4:arm64 (1.22-1) ... Setting up libgcc-11-dev:arm64 (11.2.0-10ubuntu1) ... Setting up gcc-11 (11.2.0-10ubuntu1) ... Setting up libstdc++-11-dev:arm64 (11.2.0-10ubuntu1) ... Setting up g++-11 (11.2.0-10ubuntu1) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22337708 arm64 jammy-proposed -c chroot:build-PACKAGEBUILD-22337708 --arch=arm64 --dist=jammy-proposed --nolog kineticstools_0.6.1+git20210811.276ca9c+dfsg-1.dsc Initiating build PACKAGEBUILD-22337708 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-161-generic #169-Ubuntu SMP Fri Oct 15 13:41:12 UTC 2021 aarch64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-012.buildd +========================================================================================+ | kineticstools 0.6.1+git20210811.276ca9c+dfsg-1 (arm64) Tue, 26 Oct 2021 05:23:12 +0000 | +========================================================================================+ Package: kineticstools Version: 0.6.1+git20210811.276ca9c+dfsg-1 Source Version: 0.6.1+git20210811.276ca9c+dfsg-1 Distribution: jammy-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22337708/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- kineticstools_0.6.1+git20210811.276ca9c+dfsg-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/kineticstools-R6sNIv/kineticstools-0.6.1+git20210811.276ca9c+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/kineticstools-R6sNIv' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-8S0kF2/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-8S0kF2/apt_archive ./ InRelease Get:2 copy:/<>/resolver-8S0kF2/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-8S0kF2/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-8S0kF2/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-8S0kF2/apt_archive ./ Packages [434 B] Fetched 1740 B in 0s (54.1 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 652 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-8S0kF2/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [652 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 652 B in 0s (52.8 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13244 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-docutils, python3-pbcore, python3-pbcommand, python3-numpy, python3-h5py, python3-scipy, python3-uritools, python3-pytest, python3-pytest-runner, python3-pytest-xdist Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-docutils, python3-pbcore, python3-pbcommand, python3-numpy, python3-h5py, python3-scipy, python3-uritools, python3-pytest, python3-pytest-runner, python3-pytest-xdist dpkg-deb: building package 'sbuild-build-depends-kineticstools-dummy' in '/<>/resolver-8S0kF2/apt_archive/sbuild-build-depends-kineticstools-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-kineticstools-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-8S0kF2/apt_archive ./ InRelease Get:2 copy:/<>/resolver-8S0kF2/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-8S0kF2/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-8S0kF2/apt_archive ./ Sources [584 B] Get:5 copy:/<>/resolver-8S0kF2/apt_archive ./ Packages [653 B] Fetched 2200 B in 0s (67.8 kB/s) Reading package lists... Reading package lists... Install kineticstools build dependencies (apt-based resolver) ------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file fonts-urw-base35 gettext gettext-base groff-base intltool-debian libaec0 libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcurl3-gnutls libcurl4 libdebhelper-perl libdeflate0 libdw1 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libhts3 libhtscodecs2 libicu67 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblzf1 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenjp2-7 libpipeline1 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libpython3.9-minimal libpython3.9-stdlib libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libsz2 libtiff5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap man-db media-types mime-support po-debconf python3 python3-all python3-attr python3-avro python3-biopython python3-certifi python3-chardet python3-decorator python3-distutils python3-docutils python3-execnet python3-h5py python3-h5py-serial python3-idna python3-importlib-metadata python3-iniconfig python3-iso8601 python3-lib2to3 python3-minimal python3-more-itertools python3-numpy python3-packaging python3-pbcommand python3-pbcore python3-pil python3-pkg-resources python3-pluggy python3-py python3-pyparsing python3-pysam python3-pytest python3-pytest-forked python3-pytest-runner python3-pytest-xdist python3-renderpm python3-reportlab python3-reportlab-accel python3-requests python3-roman python3-scipy python3-setuptools python3-six python3-toml python3-tz python3-uritools python3-urllib3 python3-zipp python3.10 python3.10-minimal python3.9 python3.9-minimal sgml-base xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev groff liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise w3-dtd-mathml docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended execnet-doc python-h5py-doc gfortran python-numpy-doc python3-dev python3-numpy-dbg python-pbcore-doc python-pil-doc subversion python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python3.10-venv python3.10-doc binfmt-support python3.9-venv python3.9-doc sgml-base-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl python-biopython-doc ncbi-blast+ libpaper-utils python3-pygments python3-olefile The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file fonts-urw-base35 gettext gettext-base groff-base intltool-debian libaec0 libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcurl3-gnutls libcurl4 libdebhelper-perl libdeflate0 libdw1 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libhts3 libhtscodecs2 libicu67 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblzf1 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenjp2-7 libpipeline1 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libpython3.9-minimal libpython3.9-stdlib libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libsz2 libtiff5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap man-db media-types mime-support po-debconf python3 python3-all python3-attr python3-avro python3-biopython python3-certifi python3-chardet python3-decorator python3-distutils python3-docutils python3-execnet python3-h5py python3-h5py-serial python3-idna python3-importlib-metadata python3-iniconfig python3-iso8601 python3-lib2to3 python3-minimal python3-more-itertools python3-numpy python3-packaging python3-pbcommand python3-pbcore python3-pil python3-pkg-resources python3-pluggy python3-py python3-pyparsing python3-pysam python3-pytest python3-pytest-forked python3-pytest-runner python3-pytest-xdist python3-renderpm python3-reportlab python3-reportlab-accel python3-requests python3-roman python3-scipy python3-setuptools python3-six python3-toml python3-tz python3-uritools python3-urllib3 python3-zipp python3.10 python3.10-minimal python3.9 python3.9-minimal sbuild-build-depends-kineticstools-dummy sgml-base xml-core 0 upgraded, 146 newly installed, 0 to remove and 0 not upgraded. Need to get 78.5 MB of archives. After this operation, 308 MB of additional disk space will be used. Get:1 copy:/<>/resolver-8S0kF2/apt_archive ./ sbuild-build-depends-kineticstools-dummy 0.invalid.0 [732 B] Get:2 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libpython3.9-minimal arm64 3.9.7-4 [781 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libexpat1 arm64 2.4.1-3 [75.9 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 python3.9-minimal arm64 3.9.7-4 [2112 kB] Get:5 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 python3-minimal arm64 3.9.4-1ubuntu2 [24.6 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main arm64 media-types all 4.0.0 [22.2 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main arm64 mailcap all 3.70ubuntu1 [23.7 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main arm64 mime-support all 3.66 [3696 B] Get:9 http://ftpmaster.internal/ubuntu jammy/main arm64 libmpdec3 arm64 2.5.1-2build1 [89.0 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libpython3.9-stdlib arm64 3.9.7-4 [1803 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 python3.9 arm64 3.9.7-4 [433 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libpython3-stdlib arm64 3.9.4-1ubuntu2 [7186 B] Get:13 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 python3 arm64 3.9.4-1ubuntu2 [22.8 kB] Get:14 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 bsdextrautils arm64 2.36.1-8ubuntu2 [73.6 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main arm64 libuchardet0 arm64 0.0.7-1build1 [76.8 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main arm64 groff-base arm64 1.22.4-7 [918 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main arm64 libpipeline1 arm64 1.5.3-1build1 [22.9 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main arm64 man-db arm64 2.9.4-2build1 [1175 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main arm64 libpython3.10-minimal arm64 3.10.0-3 [799 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main arm64 python3.10-minimal arm64 3.10.0-3 [2162 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main arm64 sgml-base all 1.30 [12.5 kB] Get:22 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libmd0 arm64 1.0.4-1 [23.8 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main arm64 libbsd0 arm64 0.11.3-1ubuntu3 [43.5 kB] Get:24 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libelf1 arm64 0.185-2 [51.1 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main arm64 libfribidi0 arm64 1.0.8-2ubuntu2 [26.1 kB] Get:26 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libglib2.0-0 arm64 2.70.0-3 [1407 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main arm64 libicu67 arm64 67.1-7ubuntu1 [10.0 MB] Get:28 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libxml2 arm64 2.9.12+dfsg-5 [725 kB] Get:29 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 python3-pkg-resources all 58.2.0-1 [130 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main arm64 libmagic-mgc arm64 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Get:41 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 autoconf all 2.71-2 [338 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main arm64 autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:43 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 automake all 1:1.16.5-1 [558 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main arm64 autopoint all 0.21-4ubuntu3 [422 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main arm64 libdebhelper-perl all 13.3.4ubuntu2 [62.5 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main arm64 libtool all 2.4.6-15build1 [164 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main arm64 dh-autoreconf all 20 [16.1 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main arm64 libsub-override-perl all 0.09-2 [9532 B] Get:50 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libfile-stripnondeterminism-perl all 1.12.0-2 [18.0 kB] Get:51 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 dh-strip-nondeterminism all 1.12.0-2 [5208 B] Get:52 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libdw1 arm64 0.185-2 [244 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main arm64 debugedit arm64 1:5.0-0ubuntu2 [47.0 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main arm64 dwz arm64 0.14-1build1 [102 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main arm64 gettext arm64 0.21-4ubuntu3 [775 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main arm64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main arm64 debhelper all 13.3.4ubuntu2 [921 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main arm64 python3-lib2to3 all 3.9.7-1 [77.9 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main arm64 python3-distutils all 3.9.7-1 [144 kB] Get:61 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 dh-python all 5.20211022.1 [99.5 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main arm64 xml-core all 0.18+nmu1 [21.6 kB] Get:63 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 docutils-common all 0.17.1+dfsg-2 [117 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main arm64 fonts-urw-base35 all 20200910-1 [6367 kB] Get:65 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 libaec0 arm64 1.0.6-1 [19.5 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main arm64 libblas3 arm64 3.9.0-3ubuntu3 [138 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main arm64 libbrotli1 arm64 1.0.9-2build4 [314 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1build1 [14.8 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1build1 [45.1 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main arm64 libldap-2.5-0 arm64 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python3-scipy arm64 1.7.1-1ubuntu1 [15.0 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 78.5 MB in 20s (3935 kB/s) Selecting previously unselected package libpython3.9-minimal:arm64. 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Setting up liblapack3:arm64 (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.14-3ubuntu2) ... Setting up gettext (0.21-4ubuntu3) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15build1) ... Setting up libwebpdemux2:arm64 (0.6.1-2.1build1) ... Setting up libedit2:arm64 (3.1-20210910-1) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up python3.10-minimal (3.10.0-3) ... Setting up libldap-2.5-0:arm64 (2.5.6+dfsg-1~exp1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython3.10-stdlib:arm64 (3.10.0-3) ... Setting up libraqm0:arm64 (0.7.0-4) ... Setting up libjs-sphinxdoc (4.2.0-5) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.0-2) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-7) ... Setting up xml-core (0.18+nmu1) ... Setting up debugedit (1:5.0-0ubuntu2) ... Setting up libcurl4:arm64 (7.74.0-1.3ubuntu2) ... Setting up libtiff5:arm64 (4.3.0-2) ... Setting up python3.9 (3.9.7-4) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.3-9) ... Setting up automake (1:1.16.5-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.10 (3.10.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:arm64 (7.74.0-1.3ubuntu2) ... Setting up python3 (3.9.4-1ubuntu2) ... Setting up man-db (2.9.4-2build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-tz (2021.3-1) ... Setting up python3-six (1.16.0-2) ... Setting up dh-autoreconf (20) ... Setting up python3-pil:arm64 (8.3.2-1) ... Setting up python3-roman (3.3-1) ... Setting up python3-decorator (4.4.2-0ubuntu1) ... Setting up python3-iso8601 (0.1.16-1) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-avro (1.10.2+dfsg-1) ... Setting up python3-reportlab-accel:arm64 (3.6.1-1) ... Setting up python3-idna (2.10-1) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3-reportlab (3.6.1-1) ... Setting up libhdf5-103-1:arm64 (1.10.7+repack-4) ... Setting up python3-execnet (1.9.0-1) ... Setting up python3-lib2to3 (3.9.7-1) ... Setting up libhdf5-hl-100:arm64 (1.10.7+repack-4) ... Setting up python3-uritools (3.0.2-1) ... Setting up python3-pkg-resources (58.2.0-1) ... Setting up python3-distutils (3.9.7-1) ... Setting up dh-python (5.20211022.1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-attr (20.3.0-1) ... Setting up libhts3:arm64 (1.13+ds-2) ... Setting up python3-pysam (0.17.0+ds-2) ... Setting up python3-renderpm:arm64 (3.6.1-1) ... Setting up python3-setuptools (58.2.0-1) ... Setting up python3-py (1.10.0-1) ... Setting up python3-all (3.9.4-1ubuntu2) ... Setting up debhelper (13.3.4ubuntu2) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-packaging (21.0-1) ... Setting up python3-chardet (4.0.0-1) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up python3-numpy (1:1.20.2-1ubuntu1) ... Setting up python3-pytest-runner (2.11.1-1.2) ... Setting up python3-biopython (1.78+dfsg-5ubuntu1) ... Setting up python3-scipy (1.7.1-1ubuntu1) ... Setting up python3-importlib-metadata (4.6.4-1) ... Setting up python3-h5py-serial (2.10.0-9build2) ... Setting up python3-pbcore (1.7.1+git20200430.a127b1e+dfsg-1) ... Setting up python3-h5py (2.10.0-9build2) ... Setting up python3-pbcommand (2.1.1+git20201023.cc0ed3d-1) ... Setting up python3-pluggy (0.13.0-7) ... Setting up python3-pytest (6.2.5-1ubuntu1) ... Setting up python3-pytest-forked (1.3.0-1) ... Setting up python3-pytest-xdist (2.4.0-1) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.17.1+dfsg-2) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.17.1+dfsg-2) ... Setting up sbuild-build-depends-kineticstools-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-161-generic arm64 (aarch64) Toolchain package versions: binutils_2.37-7ubuntu1 dpkg-dev_1.20.9ubuntu2 g++-11_11.2.0-10ubuntu1 gcc-11_11.2.0-10ubuntu1 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-10ubuntu1 libstdc++6_11.2.0-10ubuntu1 linux-libc-dev_5.13.0-19.19 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu1 base-passwd_3.5.52 bash_5.1-3ubuntu2 binutils_2.37-7ubuntu1 binutils-aarch64-linux-gnu_2.37-7ubuntu1 binutils-common_2.37-7ubuntu1 bsdextrautils_2.36.1-8ubuntu2 bsdutils_1:2.36.1-8ubuntu2 build-essential_12.9ubuntu2 bzip2_1.0.8-4ubuntu4 ca-certificates_20211016 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libtirpc3_1.3.2-2 libtool_2.4.6-15build1 libtsan0_11.2.0-10ubuntu1 libubsan1_11.2.0-10ubuntu1 libuchardet0_0.0.7-1build1 libudev1_248.3-1ubuntu8 libunistring2_0.9.10-6 libuuid1_2.36.1-8ubuntu2 libwebp6_0.6.1-2.1build1 libwebpdemux2_0.6.1-2.1build1 libwebpmux3_0.6.1-2.1build1 libxau6_1:1.0.9-1build4 libxcb1_1.14-3ubuntu2 libxdmcp6_1:1.1.3-0ubuntu4 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2build1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.13.0-19.19 lockfile-progs_0.1.19 login_1:4.8.1-1ubuntu9 logsave_1.46.3-1ubuntu3 lsb-base_11.1.0ubuntu3 lto-disabled-list_16 m4_1.4.18-5ubuntu1 mailcap_3.70ubuntu1 make_4.3-4ubuntu2 man-db_2.9.4-2build1 mawk_1.3.4.20200120-2build1 media-types_4.0.0 mime-support_3.66 mount_2.36.1-8ubuntu2 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 openssl_1.1.1l-1ubuntu1 optipng_0.7.7-2 passwd_1:4.8.1-1ubuntu9 patch_2.7.6-7build1 perl_5.32.1-3ubuntu3 perl-base_5.32.1-3ubuntu3 perl-modules-5.32_5.32.1-3ubuntu3 pinentry-curses_1.1.1-1build1 pkgbinarymangler_148 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 python3_3.9.4-1ubuntu2 python3-all_3.9.4-1ubuntu2 python3-attr_20.3.0-1 python3-avro_1.10.2+dfsg-1 python3-biopython_1.78+dfsg-5ubuntu1 python3-certifi_2020.6.20-1 python3-chardet_4.0.0-1 python3-decorator_4.4.2-0ubuntu1 python3-distutils_3.9.7-1 python3-docutils_0.17.1+dfsg-2 python3-execnet_1.9.0-1 python3-h5py_2.10.0-9build2 python3-h5py-serial_2.10.0-9build2 python3-idna_2.10-1 python3-importlib-metadata_4.6.4-1 python3-iniconfig_1.1.1-1 python3-iso8601_0.1.16-1 python3-lib2to3_3.9.7-1 python3-minimal_3.9.4-1ubuntu2 python3-more-itertools_4.2.0-3 python3-numpy_1:1.20.2-1ubuntu1 python3-packaging_21.0-1 python3-pbcommand_2.1.1+git20201023.cc0ed3d-1 python3-pbcore_1.7.1+git20200430.a127b1e+dfsg-1 python3-pil_8.3.2-1 python3-pkg-resources_58.2.0-1 python3-pluggy_0.13.0-7 python3-py_1.10.0-1 python3-pyparsing_2.4.7-1 python3-pysam_0.17.0+ds-2 python3-pytest_6.2.5-1ubuntu1 python3-pytest-forked_1.3.0-1 python3-pytest-runner_2.11.1-1.2 python3-pytest-xdist_2.4.0-1 python3-renderpm_3.6.1-1 python3-reportlab_3.6.1-1 python3-reportlab-accel_3.6.1-1 python3-requests_2.25.1+dfsg-2 python3-roman_3.3-1 python3-scipy_1.7.1-1ubuntu1 python3-setuptools_58.2.0-1 python3-six_1.16.0-2 python3-toml_0.10.2-1 python3-tz_2021.3-1 python3-uritools_3.0.2-1 python3-urllib3_1.26.5-1~exp1 python3-zipp_1.0.0-3 python3.10_3.10.0-3 python3.10-minimal_3.10.0-3 python3.9_3.9.7-4 python3.9-minimal_3.9.7-4 readline-common_8.1-2build1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kineticstools-dummy_0.invalid.0 sed_4.7-1ubuntu2 sensible-utils_0.0.17 sgml-base_1.30 systemd_248.3-1ubuntu8 systemd-sysv_248.3-1ubuntu8 systemd-timesyncd_248.3-1ubuntu8 sysvinit-utils_2.96-7ubuntu2 tar_1.34+dfsg-1build2 tzdata_2021e-1ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu1 util-linux_2.36.1-8ubuntu2 xml-core_0.18+nmu1 xz-utils_5.2.5-2build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Oct 25 21:29:00 2021 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kineticstools_0.6.1+git20210811.276ca9c+dfsg-1.dsc dpkg-source: info: extracting kineticstools in /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg dpkg-source: info: unpacking kineticstools_0.6.1+git20210811.276ca9c+dfsg.orig.tar.xz dpkg-source: info: unpacking kineticstools_0.6.1+git20210811.276ca9c+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying man-pages.patch dpkg-source: info: applying tests-import.patch dpkg-source: info: applying verbose-testing.patch dpkg-source: info: applying deactivate-tests-requiring-unavailable-data.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying tests2to3.patch dpkg-source: info: applying man-align-cols.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22337708 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22337708 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22337708 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package kineticstools dpkg-buildpackage: info: source version 0.6.1+git20210811.276ca9c+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg' dh_auto_clean I: pybuild base:232: python3.10 setup.py clean running clean removing '/<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it I: pybuild base:232: python3.9 setup.py clean running clean removing '/<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pytest_cache rm -rf kineticsTools.egg-info rm -f nosetests.xml rm -f bin/ipdSummary make[1]: Leaving directory '/<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:232: python3.10 setup.py config running config I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3.10 setup.py build running build running build_py creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools copying kineticsTools/ModificationDecode.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools copying kineticsTools/pipelineTools.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools copying kineticsTools/MultiSiteDetection.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools copying kineticsTools/WorkerProcess.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools copying kineticsTools/sharedArray.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools copying kineticsTools/KineticWorker.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools copying kineticsTools/ResultWriter.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools copying kineticsTools/BasicLdaEnricher.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools copying kineticsTools/PositiveControlEnricher.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools copying kineticsTools/MultiSiteCommon.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools copying kineticsTools/MedakaLdaEnricher.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools copying kineticsTools/__init__.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools copying kineticsTools/loader.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools copying kineticsTools/ipdModel.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools copying kineticsTools/MixtureEstimationMethods.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools copying kineticsTools/ipdSummary.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools copying kineticsTools/ReferenceUtils.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools copying kineticsTools/summarizeModifications.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/internal copying kineticsTools/internal/__init__.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/internal creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/tasks copying kineticsTools/tasks/gather_bigwig.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/tasks copying kineticsTools/tasks/__init__.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/tasks running egg_info creating kineticsTools.egg-info writing kineticsTools.egg-info/PKG-INFO writing dependency_links to kineticsTools.egg-info/dependency_links.txt writing entry points to kineticsTools.egg-info/entry_points.txt writing requirements to kineticsTools.egg-info/requires.txt writing top-level names to kineticsTools.egg-info/top_level.txt writing manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSES.txt' writing manifest file 'kineticsTools.egg-info/SOURCES.txt' creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/P6-C4.npz.gz -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/SP2-C2.npz.gz -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/SP3-C3.npz.gz -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/unknown.npz.gz -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/resources running build_ext building 'kineticsTools/tree_predict' extension creating build creating build/temp.linux-arm64-3.10 creating build/temp.linux-arm64-3.10/kineticsTools aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c kineticsTools/tree_predict.c -o build/temp.linux-arm64-3.10/kineticsTools/tree_predict.o -O3 -shared -std=c99 aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/kineticsTools/tree_predict.o -o /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/tree_predict.cpython-310-aarch64-linux-gnu.so I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/ModificationDecode.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/pipelineTools.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/MultiSiteDetection.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/WorkerProcess.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/sharedArray.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/KineticWorker.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/ResultWriter.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/BasicLdaEnricher.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/PositiveControlEnricher.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/MultiSiteCommon.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/MedakaLdaEnricher.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/__init__.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/loader.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/ipdModel.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/MixtureEstimationMethods.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/ipdSummary.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/ReferenceUtils.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/summarizeModifications.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/internal copying kineticsTools/internal/__init__.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/internal creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks copying kineticsTools/tasks/gather_bigwig.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks copying kineticsTools/tasks/__init__.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks running egg_info writing kineticsTools.egg-info/PKG-INFO writing dependency_links to kineticsTools.egg-info/dependency_links.txt writing entry points to kineticsTools.egg-info/entry_points.txt writing requirements to kineticsTools.egg-info/requires.txt writing top-level names to kineticsTools.egg-info/top_level.txt reading manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSES.txt' writing manifest file 'kineticsTools.egg-info/SOURCES.txt' creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/P6-C4.npz.gz -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/SP2-C2.npz.gz -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/SP3-C3.npz.gz -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/unknown.npz.gz -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources running build_ext building 'kineticsTools/tree_predict' extension creating build/temp.linux-arm64-3.9 creating build/temp.linux-arm64-3.9/kineticsTools aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c kineticsTools/tree_predict.c -o build/temp.linux-arm64-3.9/kineticsTools/tree_predict.o -O3 -shared -std=c99 aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.9/kineticsTools/tree_predict.o -o /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tree_predict.cpython-39-aarch64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg' cp kineticsTools/ipdSummary.py bin/ipdSummary chmod +x bin/ipdSummary PYTHONPATH=/<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg PATH=$PATH:/<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/bin dh_auto_test I: pybuild base:232: cd /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build; python3.10 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.10.0+, pytest-6.2.5, py-1.10.0, pluggy-0.13.0 -- /usr/bin/python3.10 cachedir: .pytest_cache rootdir: /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg, configfile: pytest.ini plugins: forked-1.3.0, xdist-2.4.0 gw0 I / gw1 I / gw2 I / gw3 I [gw0] linux Python 3.10.0 cwd: /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build [gw1] linux Python 3.10.0 cwd: /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build [gw2] linux Python 3.10.0 cwd: /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build [gw3] linux Python 3.10.0 cwd: /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build [gw0] Python 3.10.0+ (default, Oct 17 2021, 09:10:32) [GCC 11.2.0] [gw1] Python 3.10.0+ (default, Oct 17 2021, 09:10:32) [GCC 11.2.0] [gw2] Python 3.10.0+ (default, Oct 17 2021, 09:10:32) [GCC 11.2.0] [gw3] Python 3.10.0+ (default, Oct 17 2021, 09:10:32) [GCC 11.2.0] gw0 [19] / gw1 [19] / gw2 [19] / gw3 [19] scheduling tests via LoadScopeScheduling test/test_ipdModel.py::TestIpdModel::test_refLength test/test_integration.py::TestKineticsTools::test_help [gw3] [ 5%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_refLength test/test_ReferenceUtils.py::TestReferenceUtils::test_bam [gw0] [ 10%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_bam test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset [gw0] [ 15%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig [gw1] [ 21%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli test/test_ipdModel.py::TestIpdModel::test_snippetFunc [gw3] [ 26%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_snippetFunc [gw1] [ 31%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli test/test_loader.py::test_basic test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow [gw0] [ 36%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows [gw0] [ 42%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows [gw1] [ 47%] PASSED test/test_loader.py::test_basic test/test_loader.py::test_path [gw1] [ 52%] PASSED test/test_loader.py::test_path test/test_loader.py::test_path_with_prefixed_chem [gw1] [ 57%] PASSED test/test_loader.py::test_path_with_prefixed_chem test/test_loader.py::test_getResourcePathSpec [gw1] [ 63%] PASSED test/test_loader.py::test_getResourcePathSpec test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow [gw3] [ 68%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow test/test_summarize_modifications.py::TestSummarizeModifications::test_integration [gw3] [ 73%] SKIPPED test/test_summarize_modifications.py::TestSummarizeModifications::test_integration test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks [gw0] [ 78%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks [gw2] [ 84%] PASSED test/test_integration.py::TestKineticsTools::test_help test/test_integration.py::TestKineticsTools::test_ecoli_first_50k [gw2] [ 89%] SKIPPED test/test_integration.py::TestKineticsTools::test_ecoli_first_50k test/test_outputs.py::TestOutputs::test_csv_output [gw2] [ 94%] SKIPPED test/test_outputs.py::TestOutputs::test_csv_output test/test_outputs.py::TestOutputs::test_bigwig [gw2] [100%] SKIPPED test/test_outputs.py::TestOutputs::test_bigwig =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/avro/schema.py:1249: 20 warnings /usr/lib/python3/dist-packages/avro/schema.py:1249: DeprecationWarning: `Parse` is deprecated in avro 1.10. Please use `parse` (lowercase) instead. warnings.warn("`Parse` is deprecated in avro 1.10. " -- Docs: https://docs.pytest.org/en/stable/warnings.html - generated xml file: /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/nosetests.xml - ============================= slowest 20 durations ============================= 2.19s call .pybuild/cpython3_3.10_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help 0.01s setup .pybuild/cpython3_3.10_kineticstools/build/test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig 0.01s setup .pybuild/cpython3_3.10_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help (17 durations < 0.005s hidden. Use -vv to show these durations.) ================== 5 passed, 14 skipped, 20 warnings in 5.04s ================== I: pybuild base:232: cd /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build; python3.9 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.9.7, pytest-6.2.5, py-1.10.0, pluggy-0.13.0 -- /usr/bin/python3.9 cachedir: .pytest_cache rootdir: /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg, configfile: pytest.ini plugins: forked-1.3.0, xdist-2.4.0 gw0 I / gw1 I / gw2 I / gw3 I [gw0] linux Python 3.9.7 cwd: /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw1] linux Python 3.9.7 cwd: /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw2] linux Python 3.9.7 cwd: /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw3] linux Python 3.9.7 cwd: /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw0] Python 3.9.7 (default, Sep 24 2021, 09:43:00) -- [GCC 11.2.0] [gw1] Python 3.9.7 (default, Sep 24 2021, 09:43:00) -- [GCC 11.2.0] [gw2] Python 3.9.7 (default, Sep 24 2021, 09:43:00) -- [GCC 11.2.0] [gw3] Python 3.9.7 (default, Sep 24 2021, 09:43:00) -- [GCC 11.2.0] gw0 [19] / gw1 [19] / gw2 [19] / gw3 [19] scheduling tests via LoadScopeScheduling test/test_ReferenceUtils.py::TestReferenceUtils::test_bam test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig test/test_ipdModel.py::TestIpdModel::test_refLength [gw0] [ 5%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_bam test/test_integration.py::TestKineticsTools::test_help [gw3] [ 10%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_refLength test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset test/test_ipdModel.py::TestIpdModel::test_snippetFunc [gw3] [ 15%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_snippetFunc [gw1] [ 21%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli [gw1] [ 26%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli test/test_loader.py::test_basic [gw0] [ 31%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow [gw0] [ 36%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows [gw0] [ 42%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows [gw1] [ 47%] PASSED test/test_loader.py::test_basic test/test_loader.py::test_path [gw1] [ 52%] PASSED test/test_loader.py::test_path test/test_loader.py::test_path_with_prefixed_chem [gw1] [ 57%] PASSED test/test_loader.py::test_path_with_prefixed_chem test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow [gw3] [ 63%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow test/test_loader.py::test_getResourcePathSpec test/test_summarize_modifications.py::TestSummarizeModifications::test_integration [gw1] [ 68%] PASSED test/test_loader.py::test_getResourcePathSpec test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks [gw3] [ 73%] SKIPPED test/test_summarize_modifications.py::TestSummarizeModifications::test_integration [gw0] [ 78%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks [gw2] [ 84%] PASSED test/test_integration.py::TestKineticsTools::test_help test/test_integration.py::TestKineticsTools::test_ecoli_first_50k [gw2] [ 89%] SKIPPED test/test_integration.py::TestKineticsTools::test_ecoli_first_50k test/test_outputs.py::TestOutputs::test_csv_output [gw2] [ 94%] SKIPPED test/test_outputs.py::TestOutputs::test_csv_output test/test_outputs.py::TestOutputs::test_bigwig [gw2] [100%] SKIPPED test/test_outputs.py::TestOutputs::test_bigwig =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/avro/schema.py:1249: 20 warnings /usr/lib/python3/dist-packages/avro/schema.py:1249: DeprecationWarning: `Parse` is deprecated in avro 1.10. Please use `parse` (lowercase) instead. warnings.warn("`Parse` is deprecated in avro 1.10. " -- Docs: https://docs.pytest.org/en/stable/warnings.html - generated xml file: /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/nosetests.xml - ============================= slowest 20 durations ============================= 1.82s call .pybuild/cpython3_3.9_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help 0.01s setup .pybuild/cpython3_3.9_kineticstools/build/test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig (18 durations < 0.005s hidden. Use -vv to show these durations.) ================== 5 passed, 14 skipped, 20 warnings in 4.49s ================== make[1]: Leaving directory '/<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg' dh_auto_install I: pybuild base:232: /usr/bin/python3.10 setup.py install --root /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools running install running build running build_py running egg_info writing kineticsTools.egg-info/PKG-INFO writing dependency_links to kineticsTools.egg-info/dependency_links.txt writing entry points to kineticsTools.egg-info/entry_points.txt writing requirements to kineticsTools.egg-info/requires.txt writing top-level names to kineticsTools.egg-info/top_level.txt reading manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSES.txt' writing manifest file 'kineticsTools.egg-info/SOURCES.txt' running build_ext running install_lib creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10 creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/ModificationDecode.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/pipelineTools.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/internal copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/internal/__init__.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/internal creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/resources copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/resources/SP2-C2.npz.gz -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/resources copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/resources/unknown.npz.gz -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/resources copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/resources/P6-C4.npz.gz -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/resources copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/resources/SP3-C3.npz.gz -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/resources copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/tree_predict.cpython-310-aarch64-linux-gnu.so -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/MultiSiteDetection.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/WorkerProcess.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/sharedArray.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/KineticWorker.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/ResultWriter.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/BasicLdaEnricher.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/PositiveControlEnricher.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/MultiSiteCommon.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/MedakaLdaEnricher.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/__init__.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/loader.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/ipdModel.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/tasks copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/tasks/gather_bigwig.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/tasks copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/tasks/__init__.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/tasks creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/tasks/__pycache__ copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/tasks/__pycache__/__init__.cpython-310.pyc -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/tasks/__pycache__ copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/tasks/__pycache__/gather_bigwig.cpython-310.pyc -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/tasks/__pycache__ copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/MixtureEstimationMethods.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/ipdSummary.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/ReferenceUtils.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/summarizeModifications.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/__pycache__ copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/__pycache__/__init__.cpython-310.pyc -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/__pycache__ copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/__pycache__/loader.cpython-310.pyc -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/__pycache__ copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/__pycache__/sharedArray.cpython-310.pyc -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/__pycache__ copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/__pycache__/ReferenceUtils.cpython-310.pyc -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/__pycache__ copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/kineticsTools/__pycache__/ipdModel.cpython-310.pyc -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/__pycache__ copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.10_kineticstools/build/nosetests.xml -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/ModificationDecode.py to ModificationDecode.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/pipelineTools.py to pipelineTools.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/internal/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/MultiSiteDetection.py to MultiSiteDetection.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/WorkerProcess.py to WorkerProcess.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/sharedArray.py to sharedArray.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/KineticWorker.py to KineticWorker.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/ResultWriter.py to ResultWriter.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/BasicLdaEnricher.py to BasicLdaEnricher.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/PositiveControlEnricher.py to PositiveControlEnricher.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/MultiSiteCommon.py to MultiSiteCommon.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/MedakaLdaEnricher.py to MedakaLdaEnricher.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/loader.py to loader.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/ipdModel.py to ipdModel.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/tasks/gather_bigwig.py to gather_bigwig.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/tasks/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/MixtureEstimationMethods.py to MixtureEstimationMethods.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/ipdSummary.py to ipdSummary.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/ReferenceUtils.py to ReferenceUtils.cpython-310.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools/summarizeModifications.py to summarizeModifications.cpython-310.pyc running install_egg_info Copying kineticsTools.egg-info to /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.10/dist-packages/kineticsTools-0.8.0.egg-info Skipping SOURCES.txt running install_scripts Installing ipdSummary script to /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/bin Installing summarizeModifications script to /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/bin I: pybuild base:232: /usr/bin/python3 setup.py install --root /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools running install running build running build_py running egg_info writing kineticsTools.egg-info/PKG-INFO writing dependency_links to kineticsTools.egg-info/dependency_links.txt writing entry points to kineticsTools.egg-info/entry_points.txt writing requirements to kineticsTools.egg-info/requires.txt writing top-level names to kineticsTools.egg-info/top_level.txt reading manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSES.txt' writing manifest file 'kineticsTools.egg-info/SOURCES.txt' running build_ext running install_lib creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9 creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/ModificationDecode.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/pipelineTools.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/internal copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/internal/__init__.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/internal creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/resources copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources/SP2-C2.npz.gz -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/resources copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources/unknown.npz.gz -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/resources copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources/P6-C4.npz.gz -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/resources copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources/SP3-C3.npz.gz -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/resources copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/MultiSiteDetection.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/WorkerProcess.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/sharedArray.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/KineticWorker.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/ResultWriter.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/BasicLdaEnricher.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/PositiveControlEnricher.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/MultiSiteCommon.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/MedakaLdaEnricher.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__init__.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/loader.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/ipdModel.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks/gather_bigwig.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks/__init__.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks/__pycache__ copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks/__pycache__/__init__.cpython-39.pyc -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks/__pycache__ copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks/__pycache__/gather_bigwig.cpython-39.pyc -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks/__pycache__ copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/MixtureEstimationMethods.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/ipdSummary.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/ReferenceUtils.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/summarizeModifications.py -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools creating /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/ipdModel.cpython-39.pyc -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/sharedArray.cpython-39.pyc -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/__init__.cpython-39.pyc -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/loader.cpython-39.pyc -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/ReferenceUtils.cpython-39.pyc -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tree_predict.cpython-39-aarch64-linux-gnu.so -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/.pybuild/cpython3_3.9_kineticstools/build/nosetests.xml -> /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/ModificationDecode.py to ModificationDecode.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/pipelineTools.py to pipelineTools.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/internal/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/MultiSiteDetection.py to MultiSiteDetection.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/WorkerProcess.py to WorkerProcess.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/sharedArray.py to sharedArray.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/KineticWorker.py to KineticWorker.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/ResultWriter.py to ResultWriter.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/BasicLdaEnricher.py to BasicLdaEnricher.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/PositiveControlEnricher.py to PositiveControlEnricher.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/MultiSiteCommon.py to MultiSiteCommon.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/MedakaLdaEnricher.py to MedakaLdaEnricher.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/loader.py to loader.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/ipdModel.py to ipdModel.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks/gather_bigwig.py to gather_bigwig.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/MixtureEstimationMethods.py to MixtureEstimationMethods.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/ipdSummary.py to ipdSummary.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/ReferenceUtils.py to ReferenceUtils.cpython-39.pyc byte-compiling /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/summarizeModifications.py to summarizeModifications.cpython-39.pyc running install_egg_info Copying kineticsTools.egg-info to /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools-0.8.0.egg-info Skipping SOURCES.txt running install_scripts Installing ipdSummary script to /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/bin Installing summarizeModifications script to /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/python3-kineticstools/usr/bin mkdir -p /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/kineticstools/usr/bin mv debian/python3-kineticstools/usr/bin/* /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/kineticstools/usr/bin mkdir -p /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/kineticstools/usr/share/man//man1 rst2man doc/manual.rst > /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/kineticstools/usr/share/man//man1/ipdSummary.1 doc/manual.rst:53: (WARNING/2) "math" role not supported doc/manual.rst:55: (WARNING/2) "math" role not supported doc/manual.rst:55: (WARNING/2) "math" role not supported mkdir -p debian/kineticstools-data/usr/share/kineticstools # There is probably a simpler way, but that should do for the moment. set -e \ ; for libdir in debian/python3-kineticstools/usr/lib/python3.* \ ; do rm -rf /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \ ; mv ${libdir}/dist-packages/kineticsTools/resources /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \ ; done rm debian/python3-kineticstools/usr/lib/python3.*/dist-packages/nosetests.xml make[1]: Leaving directory '/<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installexamples -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -a -O--buildsystem=pybuild dh_strip -a -a -O--buildsystem=pybuild debugedit: debian/python3-kineticstools/usr/lib/python3/dist-packages/kineticsTools/tree_predict.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 cb8f8db9c5ee39334e44853f063ba6d451753dd2 debugedit: debian/python3-kineticstools/usr/lib/python3/dist-packages/kineticsTools/tree_predict.cpython-39-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 cb8f8db9c5ee39334e44853f063ba6d451753dd2 dh_makeshlibs -a -a -O--buildsystem=pybuild dh_shlibdeps -a -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-kineticstools: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-kineticstools: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-kineticstools: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-kineticstools: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. INFO: pkgstriptranslations version 148 INFO: pkgstriptranslations version 148 pkgstriptranslations: processing python3-kineticstools (in debian/python3-kineticstools); do_strip: , oemstrip: pkgstriptranslations: processing python3-kineticstools-dbgsym (in debian/.debhelper/python3-kineticstools/dbgsym-root); do_strip: , oemstrip: /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgstripfiles: processing control file: debian/python3-kineticstools/DEBIAN/control, package python3-kineticstools, directory debian/python3-kineticstools pkgstripfiles: processing control file: debian/.debhelper/python3-kineticstools/dbgsym-root/DEBIAN/control, package python3-kineticstools-dbgsym, directory debian/.debhelper/python3-kineticstools/dbgsym-root dpkg-deb: building package 'python3-kineticstools-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-kineticstools/python3-kineticstools-dbgsym_0.6.1+git20210811.276ca9c+dfsg-1_arm64.deb'. pkgstripfiles: Truncating usr/share/doc/python3-kineticstools/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-kineticstools ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-kineticstools' in '../python3-kineticstools_0.6.1+git20210811.276ca9c+dfsg-1_arm64.deb'. Renaming python3-kineticstools-dbgsym_0.6.1+git20210811.276ca9c+dfsg-1_arm64.deb to python3-kineticstools-dbgsym_0.6.1+git20210811.276ca9c+dfsg-1_arm64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../kineticstools_0.6.1+git20210811.276ca9c+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-10-26T05:26:04Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kineticstools_0.6.1+git20210811.276ca9c+dfsg-1_arm64.changes: ------------------------------------------------------------- Format: 1.8 Date: Mon, 25 Oct 2021 23:20:10 +0200 Source: kineticstools Binary: python3-kineticstools Built-For-Profiles: noudeb Architecture: arm64 Version: 0.6.1+git20210811.276ca9c+dfsg-1 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Étienne Mollier Description: python3-kineticstools - detection of DNA modifications (Python 3 library) Changes: kineticstools (0.6.1+git20210811.276ca9c+dfsg-1) unstable; urgency=medium . * New upstream version * d/control: update uploader address * Standards-Version: 4.6.0 (routine-update) * No tab in license text (routine-update) * d/rules: remove python nose test environment and leftovers. * Extend tests2to3.patch to cover pytest-3 in Makefile. * Replace autopkgtest dependency on python3-nose to python3-pytest and call the Makefile target with the proper py-tests target instead of the now non-existent one. Checksums-Sha1: 80e1e39a00aa2111fc44b68e66e7a2d5d806d8ab 10153 kineticstools_0.6.1+git20210811.276ca9c+dfsg-1_arm64.buildinfo 475240d5ccf62f13e08c1fe7da7f9fdc6e89f0fe 7692 python3-kineticstools-dbgsym_0.6.1+git20210811.276ca9c+dfsg-1_arm64.ddeb c7a7f497065cf54633288fcadb4eb6d37a8b028c 47880 python3-kineticstools_0.6.1+git20210811.276ca9c+dfsg-1_arm64.deb Checksums-Sha256: 360ddbda251c41e182c71ca9818acd011b332307e7c236b2436cfd29ebd1b2db 10153 kineticstools_0.6.1+git20210811.276ca9c+dfsg-1_arm64.buildinfo 714088e29529a9066e3e10f8bf1685b84f97917aa8334fadbcfe9895942ce403 7692 python3-kineticstools-dbgsym_0.6.1+git20210811.276ca9c+dfsg-1_arm64.ddeb 921a32e79c685b3dc90a3adbc7e2e82324c149c390c8ad6517762212bf949dab 47880 python3-kineticstools_0.6.1+git20210811.276ca9c+dfsg-1_arm64.deb Files: 1558a30e0a006eb2602db27d89a2914a 10153 science optional kineticstools_0.6.1+git20210811.276ca9c+dfsg-1_arm64.buildinfo d335e55b78c7a792b86a62cee3dbca1b 7692 debug optional python3-kineticstools-dbgsym_0.6.1+git20210811.276ca9c+dfsg-1_arm64.ddeb 6aa4ceddd5661c76eb8d502e7bd3fb23 47880 python optional python3-kineticstools_0.6.1+git20210811.276ca9c+dfsg-1_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: kineticstools Binary: python3-kineticstools python3-kineticstools-dbgsym Architecture: arm64 Version: 0.6.1+git20210811.276ca9c+dfsg-1 Checksums-Md5: d335e55b78c7a792b86a62cee3dbca1b 7692 python3-kineticstools-dbgsym_0.6.1+git20210811.276ca9c+dfsg-1_arm64.ddeb 6aa4ceddd5661c76eb8d502e7bd3fb23 47880 python3-kineticstools_0.6.1+git20210811.276ca9c+dfsg-1_arm64.deb Checksums-Sha1: 475240d5ccf62f13e08c1fe7da7f9fdc6e89f0fe 7692 python3-kineticstools-dbgsym_0.6.1+git20210811.276ca9c+dfsg-1_arm64.ddeb c7a7f497065cf54633288fcadb4eb6d37a8b028c 47880 python3-kineticstools_0.6.1+git20210811.276ca9c+dfsg-1_arm64.deb Checksums-Sha256: 714088e29529a9066e3e10f8bf1685b84f97917aa8334fadbcfe9895942ce403 7692 python3-kineticstools-dbgsym_0.6.1+git20210811.276ca9c+dfsg-1_arm64.ddeb 921a32e79c685b3dc90a3adbc7e2e82324c149c390c8ad6517762212bf949dab 47880 python3-kineticstools_0.6.1+git20210811.276ca9c+dfsg-1_arm64.deb Build-Origin: Ubuntu Build-Architecture: arm64 Build-Date: Tue, 26 Oct 2021 05:26:03 +0000 Build-Path: /<>/kineticstools-0.6.1+git20210811.276ca9c+dfsg Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 12ubuntu1), base-passwd (= 3.5.52), bash (= 5.1-3ubuntu2), binutils (= 2.37-7ubuntu1), binutils-aarch64-linux-gnu (= 2.37-7ubuntu1), binutils-common (= 2.37-7ubuntu1), bsdextrautils (= 2.36.1-8ubuntu2), bsdutils (= 1:2.36.1-8ubuntu2), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-4ubuntu4), ca-certificates (= 20211016), coreutils (= 8.32-4ubuntu3), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-10ubuntu1), dash (= 0.5.11+git20210120+802ebd4-2), debconf (= 1.5.78), debhelper (= 13.3.4ubuntu2), debianutils (= 5.5-1), debugedit (= 1:5.0-0ubuntu2), dh-autoreconf (= 20), dh-python (= 5.20211022.1), dh-strip-nondeterminism (= 1.12.0-2), diffutils (= 1:3.8-0ubuntu1), docutils-common (= 0.17.1+dfsg-2), dpkg (= 1.20.9ubuntu2), dpkg-dev (= 1.20.9ubuntu2), dwz (= 0.14-1build1), file (= 1:5.39-3build1), findutils (= 4.8.0-1ubuntu2), fonts-urw-base35 (= 20200910-1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-10ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-10ubuntu1), gcc-11-base (= 11.2.0-10ubuntu1), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), grep (= 3.7-0ubuntu1), groff-base (= 1.22.4-7), gzip (= 1.10-4ubuntu2), hostname (= 3.23ubuntu1), init-system-helpers (= 1.60build1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu2), libaec0 (= 1.0.6-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-10ubuntu1), libatomic1 (= 11.2.0-10ubuntu1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), libaudit1 (= 1:3.0-2ubuntu3), libbinutils (= 2.37-7ubuntu1), libblas3 (= 3.9.0-3ubuntu3), libblkid1 (= 2.36.1-8ubuntu2), libbrotli1 (= 1.0.9-2build4), libbsd0 (= 0.11.3-1ubuntu3), libbz2-1.0 (= 1.0.8-4ubuntu4), libc-bin (= 2.34-0ubuntu3), libc-dev-bin (= 2.34-0ubuntu3), libc6 (= 2.34-0ubuntu3), libc6-dev (= 2.34-0ubuntu3), libcap-ng0 (= 0.7.9-2.2build2), libcap2 (= 1:2.44-1build2), libcc1-0 (= 11.2.0-10ubuntu1), libcom-err2 (= 1.46.3-1ubuntu3), libcrypt-dev (= 1:4.4.18-4ubuntu2), libcrypt1 (= 1:4.4.18-4ubuntu2), libctf-nobfd0 (= 2.37-7ubuntu1), libctf0 (= 2.37-7ubuntu1), libcurl3-gnutls (= 7.74.0-1.3ubuntu2), libcurl4 (= 7.74.0-1.3ubuntu2), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdebconfclient0 (= 0.256ubuntu4), libdebhelper-perl (= 13.3.4ubuntu2), libdeflate0 (= 1.7-2ubuntu2), libdpkg-perl (= 1.20.9ubuntu2), libdw1 (= 0.185-2), libedit2 (= 3.1-20210910-1), libelf1 (= 0.185-2), libexpat1 (= 2.4.1-3), libffi8 (= 3.4.2-1ubuntu5), libfile-stripnondeterminism-perl (= 1.12.0-2), libfreetype6 (= 2.11.0+dfsg-1), libfribidi0 (= 1.0.8-2ubuntu2), libgcc-11-dev (= 11.2.0-10ubuntu1), libgcc-s1 (= 11.2.0-10ubuntu1), libgcrypt20 (= 1.8.7-5ubuntu2), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgfortran5 (= 11.2.0-10ubuntu1), libglib2.0-0 (= 2.70.0-3), libgmp10 (= 2:6.2.1+dfsg-1ubuntu3), libgnutls30 (= 3.7.1-5ubuntu1), libgomp1 (= 11.2.0-10ubuntu1), libgpg-error0 (= 1.42-3), libgraphite2-3 (= 1.3.14-1build1), libgssapi-krb5-2 (= 1.18.3-7), libharfbuzz0b (= 2.7.4-1ubuntu2), libhdf5-103-1 (= 1.10.7+repack-4), libhdf5-hl-100 (= 1.10.7+repack-4), libhogweed6 (= 3.7.3-1build1), libhts3 (= 1.13+ds-2), libhtscodecs2 (= 1.1.1-3), libhwasan0 (= 11.2.0-10ubuntu1), libicu67 (= 67.1-7ubuntu1), libidn2-0 (= 2.3.2-2), libimagequant0 (= 2.12.2-1.1build1), libisl23 (= 0.24-2), libitm1 (= 11.2.0-10ubuntu1), libjbig0 (= 2.1-3.1build2), libjpeg-turbo8 (= 2.0.6-0ubuntu3), libjpeg8 (= 8c-2ubuntu8), libjs-jquery (= 3.5.1+dfsg+~3.5.5-8), libjs-sphinxdoc (= 4.2.0-5), libjs-underscore (= 1.9.1~dfsg-4), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2ubuntu2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblapack3 (= 3.9.0-3ubuntu3), liblbfgsb0 (= 3.0+dfsg.3-9), liblcms2-2 (= 2.12~rc1-2build1), libldap-2.5-0 (= 2.5.6+dfsg-1~exp1ubuntu1), liblsan0 (= 11.2.0-10ubuntu1), liblz4-1 (= 1.9.3-2build1), liblzf1 (= 3.6-3), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.39-3build1), libmagic1 (= 1:5.39-3build1), libmd0 (= 1.0.4-1), libmount1 (= 2.36.1-8ubuntu2), libmpc3 (= 1.2.1-1), libmpdec3 (= 2.5.1-2build1), libmpfr6 (= 4.1.0-3build2), libncursesw6 (= 6.2+20210905-1), libnettle8 (= 3.7.3-1build1), libnghttp2-14 (= 1.43.0-1build1), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libopenjp2-7 (= 2.4.0-3), libp11-kit0 (= 0.24.0-5), libpam-modules (= 1.3.1-5ubuntu11), libpam-modules-bin (= 1.3.1-5ubuntu11), libpam-runtime (= 1.3.1-5ubuntu11), libpam0g (= 1.3.1-5ubuntu11), libpcre2-8-0 (= 10.37-0ubuntu2), libpcre3 (= 2:8.39-13build4), libperl5.32 (= 5.32.1-3ubuntu3), libpipeline1 (= 1.5.3-1build1), libpng16-16 (= 1.6.37-3build4), libpsl5 (= 0.21.0-1.2build1), libpython3-stdlib (= 3.9.4-1ubuntu2), libpython3.10-minimal (= 3.10.0-3), libpython3.10-stdlib (= 3.10.0-3), libpython3.9-minimal (= 3.9.7-4), libpython3.9-stdlib (= 3.9.7-4), libraqm0 (= 0.7.0-4), libreadline8 (= 8.1-2build1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build3), libsasl2-2 (= 2.1.27+dfsg-2.1build1), libsasl2-modules-db (= 2.1.27+dfsg-2.1build1), libseccomp2 (= 2.5.1-1ubuntu2), libselinux1 (= 3.1-3build3), libsigsegv2 (= 2.13-1ubuntu2), libsmartcols1 (= 2.36.1-8ubuntu2), libsqlite3-0 (= 3.36.0-2), libssh-4 (= 0.9.6-1), libssl1.1 (= 1.1.1l-1ubuntu1), libstdc++-11-dev (= 11.2.0-10ubuntu1), libstdc++6 (= 11.2.0-10ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 248.3-1ubuntu8), libsz2 (= 1.0.6-1), libtasn1-6 (= 4.17.0-2), libtiff5 (= 4.3.0-2), libtinfo6 (= 6.2+20210905-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15build1), libtsan0 (= 11.2.0-10ubuntu1), libubsan1 (= 11.2.0-10ubuntu1), libuchardet0 (= 0.0.7-1build1), libudev1 (= 248.3-1ubuntu8), libunistring2 (= 0.9.10-6), libuuid1 (= 2.36.1-8ubuntu2), libwebp6 (= 0.6.1-2.1build1), libwebpdemux2 (= 0.6.1-2.1build1), libwebpmux3 (= 0.6.1-2.1build1), libxau6 (= 1:1.0.9-1build4), libxcb1 (= 1.14-3ubuntu2), libxdmcp6 (= 1:1.1.3-0ubuntu4), libxml2 (= 2.9.12+dfsg-5), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.13.0-19.19), login (= 1:4.8.1-1ubuntu9), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 16), m4 (= 1.4.18-5ubuntu1), mailcap (= 3.70ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.9.4-2build1), mawk (= 1.3.4.20200120-2build1), media-types (= 4.0.0), mime-support (= 3.66), ncurses-base (= 6.2+20210905-1), ncurses-bin (= 6.2+20210905-1), openssl (= 1.1.1l-1ubuntu1), patch (= 2.7.6-7build1), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), po-debconf (= 1.0.21+nmu1), python3 (= 3.9.4-1ubuntu2), python3-all (= 3.9.4-1ubuntu2), python3-attr (= 20.3.0-1), python3-avro (= 1.10.2+dfsg-1), python3-biopython (= 1.78+dfsg-5ubuntu1), python3-certifi (= 2020.6.20-1), python3-chardet (= 4.0.0-1), python3-decorator (= 4.4.2-0ubuntu1), python3-distutils (= 3.9.7-1), python3-docutils (= 0.17.1+dfsg-2), python3-execnet (= 1.9.0-1), python3-h5py (= 2.10.0-9build2), python3-h5py-serial (= 2.10.0-9build2), python3-idna (= 2.10-1), python3-importlib-metadata (= 4.6.4-1), python3-iniconfig (= 1.1.1-1), python3-iso8601 (= 0.1.16-1), python3-lib2to3 (= 3.9.7-1), python3-minimal (= 3.9.4-1ubuntu2), python3-more-itertools (= 4.2.0-3), python3-numpy (= 1:1.20.2-1ubuntu1), python3-packaging (= 21.0-1), python3-pbcommand (= 2.1.1+git20201023.cc0ed3d-1), python3-pbcore (= 1.7.1+git20200430.a127b1e+dfsg-1), python3-pil (= 8.3.2-1), python3-pkg-resources (= 58.2.0-1), python3-pluggy (= 0.13.0-7), python3-py (= 1.10.0-1), python3-pyparsing (= 2.4.7-1), python3-pysam (= 0.17.0+ds-2), python3-pytest (= 6.2.5-1ubuntu1), python3-pytest-forked (= 1.3.0-1), python3-pytest-runner (= 2.11.1-1.2), python3-pytest-xdist (= 2.4.0-1), python3-renderpm (= 3.6.1-1), python3-reportlab (= 3.6.1-1), python3-reportlab-accel (= 3.6.1-1), python3-requests (= 2.25.1+dfsg-2), python3-roman (= 3.3-1), python3-scipy (= 1.7.1-1ubuntu1), python3-setuptools (= 58.2.0-1), python3-six (= 1.16.0-2), python3-toml (= 0.10.2-1), python3-tz (= 2021.3-1), python3-uritools (= 3.0.2-1), python3-urllib3 (= 1.26.5-1~exp1), python3-zipp (= 1.0.0-3), python3.10 (= 3.10.0-3), python3.10-minimal (= 3.10.0-3), python3.9 (= 3.9.7-4), python3.9-minimal (= 3.9.7-4), readline-common (= 8.1-2build1), rpcsvc-proto (= 1.4.2-0ubuntu5), sed (= 4.7-1ubuntu2), sensible-utils (= 0.0.17), sgml-base (= 1.30), sysvinit-utils (= 2.96-7ubuntu2), tar (= 1.34+dfsg-1build2), tzdata (= 2021e-1ubuntu1), util-linux (= 2.36.1-8ubuntu2), xml-core (= 0.18+nmu1), xz-utils (= 5.2.5-2build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1635196810" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python3-kineticstools_0.6.1+git20210811.276ca9c+dfsg-1_arm64.deb ---------------------------------------------------------------- new Debian package, version 2.0. size 47880 bytes: control archive=2102 bytes. 1150 bytes, 21 lines control 3095 bytes, 31 lines md5sums 279 bytes, 12 lines * postinst #!/bin/sh 428 bytes, 12 lines * prerm #!/bin/sh Package: python3-kineticstools Source: kineticstools Version: 0.6.1+git20210811.276ca9c+dfsg-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 221 Depends: python3 (<< 3.11), python3 (>= 3.9~), python3-numpy, python3-pbcommand, python3-pbcore, python3-pybigwig, python3-scipy, python3:any, kineticstools-data (= 0.6.1+git20210811.276ca9c+dfsg-1) Section: python Priority: optional Homepage: https://github.com/PacificBiosciences/kineticsTools Description: detection of DNA modifications (Python 3 library) Tools for detecting DNA modifications from single molecule, real-time (SMRT®) sequencing data. This tool implements the P_ModificationDetection module in SMRT® Portal, used by the RS_Modification_Detection and RS_Modifications_and_Motif_Detection protocol. Researchers interested in understanding or extending the modification detection algorithms can use these tools as a starting point. . This package is part of the SMRTAnalysis suite and contains the backend Python 3 library. drwxr-xr-x root/root 0 2021-10-25 21:20 ./ drwxr-xr-x root/root 0 2021-10-25 21:20 ./usr/ drwxr-xr-x root/root 0 2021-10-25 21:20 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-25 21:20 ./usr/lib/python3/ drwxr-xr-x root/root 0 2021-10-25 21:20 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2021-10-25 21:20 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/ -rw-r--r-- root/root 292 2021-10-25 21:20 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2021-10-25 21:20 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/dependency_links.txt -rw-r--r-- root/root 129 2021-10-25 21:20 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/entry_points.txt -rw-r--r-- root/root 1 2021-10-25 21:20 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/not-zip-safe -rw-r--r-- root/root 39 2021-10-25 21:20 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/requires.txt -rw-r--r-- root/root 41 2021-10-25 21:20 ./usr/lib/python3/dist-packages/kineticsTools-0.8.0.egg-info/top_level.txt drwxr-xr-x root/root 0 2021-10-25 21:20 ./usr/lib/python3/dist-packages/kineticsTools/ -rw-r--r-- root/root 2762 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/BasicLdaEnricher.py -rw-r--r-- root/root 34458 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/KineticWorker.py -rw-r--r-- root/root 3700 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/MedakaLdaEnricher.py -rw-r--r-- root/root 11113 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/MixtureEstimationMethods.py -rw-r--r-- root/root 14350 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/ModificationDecode.py -rw-r--r-- root/root 5158 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/MultiSiteCommon.py -rw-r--r-- root/root 9748 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/MultiSiteDetection.py -rw-r--r-- root/root 5190 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/PositiveControlEnricher.py -rw-r--r-- root/root 4365 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/ReferenceUtils.py -rw-r--r-- root/root 20650 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/ResultWriter.py -rw-r--r-- root/root 6096 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/WorkerProcess.py -rw-r--r-- root/root 0 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/__init__.py drwxr-xr-x root/root 0 2021-10-25 21:20 ./usr/lib/python3/dist-packages/kineticsTools/internal/ -rw-r--r-- root/root 140 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/internal/__init__.py -rw-r--r-- root/root 20039 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/ipdModel.py -rw-r--r-- root/root 23827 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/ipdSummary.py -rw-r--r-- root/root 2118 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/loader.py -rw-r--r-- root/root 350 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/pipelineTools.py lrwxrwxrwx root/root 0 2021-10-25 21:20 ./usr/lib/python3/dist-packages/kineticsTools/resources -> ../../../../share/kineticstools/resources -rw-r--r-- root/root 569 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/sharedArray.py -rw-r--r-- root/root 5951 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/summarizeModifications.py drwxr-xr-x root/root 0 2021-10-25 21:20 ./usr/lib/python3/dist-packages/kineticsTools/tasks/ -rw-r--r-- root/root 0 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/tasks/__init__.py -rw-r--r-- root/root 3854 2021-08-11 20:38 ./usr/lib/python3/dist-packages/kineticsTools/tasks/gather_bigwig.py -rw-r--r-- root/root 5928 2021-10-25 21:20 ./usr/lib/python3/dist-packages/kineticsTools/tree_predict.cpython-310-aarch64-linux-gnu.so -rw-r--r-- root/root 5928 2021-10-25 21:20 ./usr/lib/python3/dist-packages/kineticsTools/tree_predict.cpython-39-aarch64-linux-gnu.so drwxr-xr-x root/root 0 2021-10-25 21:20 ./usr/share/ drwxr-xr-x root/root 0 2021-10-25 21:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-25 21:20 ./usr/share/doc/python3-kineticstools/ -rw-r--r-- root/root 2226 2021-10-25 21:20 ./usr/share/doc/python3-kineticstools/changelog.Debian.gz -rw-r--r-- root/root 2082 2021-10-25 20:05 ./usr/share/doc/python3-kineticstools/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: n/a Build-Time: 39 Distribution: jammy-proposed Host Architecture: arm64 Install-Time: 127 Job: kineticstools_0.6.1+git20210811.276ca9c+dfsg-1.dsc Machine Architecture: arm64 Package: kineticstools Package-Time: 172 Source-Version: 0.6.1+git20210811.276ca9c+dfsg-1 Space: n/a Status: successful Version: 0.6.1+git20210811.276ca9c+dfsg-1 -------------------------------------------------------------------------------- Finished at 2021-10-26T05:26:04Z Build needed 00:02:52, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22337708 Scanning for processes to kill in build PACKAGEBUILD-22337708