https://launchpad.net/ubuntu/+source/kissplice/2.5.4+dfsg-1/+build/22621338 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-045 4.15.0-163-generic #171-Ubuntu SMP Fri Nov 5 11:55:11 UTC 2021 x86_64 Buildd toolchain package versions: launchpad-buildd_205~511~ubuntu18.04.1 python3-lpbuildd_205~511~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 13 Dec 17:17:20 ntpdate[1700]: adjust time server 10.131.248.1 offset 0.000002 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22621338 --image-type chroot /home/buildd/filecache-default/b0c128df17a460089eca69348f06144377489985 Creating target for build PACKAGEBUILD-22621338 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22621338 Starting target for build PACKAGEBUILD-22621338 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22621338 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22621338 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22621338 Updating target for build PACKAGEBUILD-22621338 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main amd64 Packages [1407 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe amd64 Packages [13.3 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5554 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 Packages [97.7 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [37.3 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 Packages [598 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [301 kB] Fetched 22.3 MB in 3s (8223 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libssl1.1 Use 'sudo apt autoremove' to remove it. The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: libsemanage2 libsepol2 libssl3 The following packages will be upgraded: apt base-files bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils bzip2 ca-certificates cpp-11 dash debconf debianutils dpkg dpkg-dev e2fsprogs g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libbinutils libblkid1 libbz2-1.0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdpkg-perl libext2fs2 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mount ncurses-base ncurses-bin openssl passwd pkgbinarymangler sed sensible-utils systemd systemd-sysv systemd-timesyncd tzdata usrmerge util-linux 108 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 84.3 MB of archives. After this operation, 354 MB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main amd64 debconf all 1.5.79 [126 kB] Get:2 http://ftpmaster.internal/ubuntu jammy/main amd64 libpam0g amd64 1.4.0-10ubuntu2 [61.5 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main amd64 libcrypt-dev amd64 1:4.4.26-1 [112 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main amd64 libcrypt1 amd64 1:4.4.26-1 [82.1 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main amd64 base-files amd64 12ubuntu2 [63.3 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main amd64 debianutils amd64 5.5-1ubuntu1 [107 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main amd64 bash amd64 5.1-5ubuntu1 [771 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main amd64 bsdutils amd64 1:2.37.2-4ubuntu1 [80.9 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main amd64 libgpg-error0 amd64 1.42-3 [68.1 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main amd64 libgcrypt20 amd64 1.9.4-3ubuntu2 [515 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main amd64 bzip2 amd64 1.0.8-5 [34.8 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main amd64 libbz2-1.0 amd64 1.0.8-5 [34.5 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main amd64 libcc1-0 amd64 11.2.0-12ubuntu1 [53.8 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main amd64 gcc-11-base amd64 11.2.0-12ubuntu1 [20.7 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main amd64 libgcc-s1 amd64 11.2.0-12ubuntu1 [45.6 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main amd64 libgomp1 amd64 11.2.0-12ubuntu1 [117 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main amd64 libitm1 amd64 11.2.0-12ubuntu1 [30.0 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main amd64 libatomic1 amd64 11.2.0-12ubuntu1 [9998 B] Get:19 http://ftpmaster.internal/ubuntu jammy/main amd64 libasan6 amd64 11.2.0-12ubuntu1 [2282 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main amd64 liblsan0 amd64 11.2.0-12ubuntu1 [976 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main amd64 libtsan0 amd64 11.2.0-12ubuntu1 [2259 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main amd64 libubsan1 amd64 11.2.0-12ubuntu1 [922 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main amd64 libquadmath0 amd64 11.2.0-12ubuntu1 [154 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main amd64 g++-11 amd64 11.2.0-12ubuntu1 [11.4 MB] Get:25 http://ftpmaster.internal/ubuntu jammy/main amd64 libstdc++-11-dev amd64 11.2.0-12ubuntu1 [2098 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main amd64 libgcc-11-dev amd64 11.2.0-12ubuntu1 [2532 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main amd64 gcc-11 amd64 11.2.0-12ubuntu1 [20.1 MB] Get:28 http://ftpmaster.internal/ubuntu jammy/main amd64 cpp-11 amd64 11.2.0-12ubuntu1 [9962 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main amd64 libstdc++6 amd64 11.2.0-12ubuntu1 [656 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main amd64 libisl23 amd64 0.24-2 [728 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main amd64 libmpc3 amd64 1.2.1-1 [46.9 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main amd64 libzstd1 amd64 1.4.8+dfsg-3 [324 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main amd64 libctf0 amd64 2.37-10ubuntu1 [103 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main amd64 libctf-nobfd0 amd64 2.37-10ubuntu1 [106 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main amd64 libbinutils amd64 2.37-10ubuntu1 [653 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main amd64 binutils-common amd64 2.37-10ubuntu1 [213 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main amd64 binutils amd64 2.37-10ubuntu1 [3192 B] Get:38 http://ftpmaster.internal/ubuntu jammy/main amd64 binutils-x86-64-linux-gnu amd64 2.37-10ubuntu1 [2314 kB] Get:39 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libssl3 amd64 3.0.0-1ubuntu2 [1896 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main amd64 libblkid1 amd64 2.37.2-4ubuntu1 [103 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main amd64 libuuid1 amd64 2.37.2-4ubuntu1 [23.8 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main amd64 libcryptsetup12 amd64 2:2.4.2-1ubuntu4 [208 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main amd64 libidn2-0 amd64 2.3.2-2 [66.5 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main amd64 libp11-kit0 amd64 0.24.0-6 [252 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main amd64 libtasn1-6 amd64 4.18.0-4 [42.9 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main amd64 libgnutls30 amd64 3.7.2-2ubuntu1 [957 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main amd64 systemd-sysv amd64 249.5-2ubuntu2 [10.5 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main amd64 systemd-timesyncd amd64 249.5-2ubuntu2 [30.9 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main amd64 libapparmor1 amd64 3.0.3-0ubuntu5 [38.0 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main amd64 libip4tc2 amd64 1.8.7-1ubuntu4 [19.8 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main amd64 libkmod2 amd64 28-1ubuntu5 [48.0 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre2-8-0 amd64 10.39-3 [220 kB] Get:53 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libselinux1 amd64 3.3-1build1 [74.5 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main amd64 libmount1 amd64 2.37.2-4ubuntu1 [122 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main amd64 libseccomp2 amd64 2.5.2-2ubuntu2 [48.3 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main amd64 login amd64 1:4.8.1-2ubuntu1 [188 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main amd64 util-linux amd64 2.37.2-4ubuntu1 [1063 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main amd64 mount amd64 2.37.2-4ubuntu1 [114 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main amd64 systemd amd64 249.5-2ubuntu2 [4542 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main amd64 libsystemd0 amd64 249.5-2ubuntu2 [317 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main amd64 libudev1 amd64 249.5-2ubuntu2 [77.6 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main amd64 libapt-pkg6.0 amd64 2.3.13 [904 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main amd64 dpkg amd64 1.20.9ubuntu3 [1266 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main amd64 dash amd64 0.5.11+git20210903+057cd650a4ed-3 [91.8 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main amd64 grep amd64 3.7-1 [156 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main amd64 libncurses6 amd64 6.3-1 [111 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main amd64 libncursesw6 amd64 6.3-1 [147 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main amd64 libtinfo6 amd64 6.3-1 [104 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main amd64 ncurses-bin amd64 6.3-1 [184 kB] Get:70 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 sed amd64 4.8-1 [188 kB] Get:71 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 init-system-helpers all 1.61 [39.3 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main amd64 ncurses-base all 6.3-1 [19.9 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main amd64 gpgv amd64 2.2.27-2ubuntu1 [137 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main amd64 apt amd64 2.3.13 [1387 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main amd64 libsepol2 amd64 3.3-1 [281 kB] Get:76 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libsemanage-common all 3.3-1build1 [10.0 kB] Get:77 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libsemanage2 amd64 3.3-1build1 [92.4 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main amd64 passwd amd64 1:4.8.1-2ubuntu1 [765 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main amd64 libpam-modules-bin amd64 1.4.0-10ubuntu2 [37.6 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main amd64 libpam-modules amd64 1.4.0-10ubuntu2 [280 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main amd64 logsave amd64 1.46.4-1ubuntu1 [10.9 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main amd64 libext2fs2 amd64 1.46.4-1ubuntu1 [209 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main amd64 e2fsprogs amd64 1.46.4-1ubuntu1 [589 kB] Get:84 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 init amd64 1.61 [6102 B] Get:85 http://ftpmaster.internal/ubuntu jammy/main amd64 libattr1 amd64 1:2.5.1-1 [13.3 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main amd64 libcom-err2 amd64 1.46.4-1ubuntu1 [10.1 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main amd64 libk5crypto3 amd64 1.19.2-0ubuntu1 [86.3 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main amd64 libkrb5support0 amd64 1.19.2-0ubuntu1 [32.4 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main amd64 libkrb5-3 amd64 1.19.2-0ubuntu1 [356 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main amd64 libgssapi-krb5-2 amd64 1.19.2-0ubuntu1 [144 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main amd64 libpam-runtime all 1.4.0-10ubuntu2 [40.2 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main amd64 libsmartcols1 amd64 2.37.2-4ubuntu1 [50.9 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main amd64 libss2 amd64 1.46.4-1ubuntu1 [12.3 kB] Get:94 http://ftpmaster.internal/ubuntu jammy/main amd64 sensible-utils all 0.0.17 [20.1 kB] Get:95 http://ftpmaster.internal/ubuntu jammy/main amd64 usrmerge all 25ubuntu2 [54.7 kB] Get:96 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 openssl amd64 3.0.0-1ubuntu2 [1181 kB] Get:97 http://ftpmaster.internal/ubuntu jammy/main amd64 ca-certificates all 20211016 [148 kB] Get:98 http://ftpmaster.internal/ubuntu jammy/main amd64 libsqlite3-0 amd64 3.36.0-2 [641 kB] Get:99 http://ftpmaster.internal/ubuntu jammy/main amd64 tzdata all 2021e-1ubuntu1 [343 kB] Get:100 http://ftpmaster.internal/ubuntu jammy/main amd64 libgdbm6 amd64 1.22-1 [35.2 kB] Get:101 http://ftpmaster.internal/ubuntu jammy/main amd64 dpkg-dev all 1.20.9ubuntu3 [933 kB] Get:102 http://ftpmaster.internal/ubuntu jammy/main amd64 libdpkg-perl all 1.20.9ubuntu3 [235 kB] Get:103 http://ftpmaster.internal/ubuntu jammy/main amd64 make amd64 4.3-4ubuntu2 [179 kB] Get:104 http://ftpmaster.internal/ubuntu jammy/main amd64 lto-disabled-list all 17 [12.1 kB] Get:105 http://ftpmaster.internal/ubuntu jammy/main amd64 gpg amd64 2.2.27-2ubuntu1 [518 kB] Get:106 http://ftpmaster.internal/ubuntu jammy/main amd64 gpgconf amd64 2.2.27-2ubuntu1 [93.9 kB] Get:107 http://ftpmaster.internal/ubuntu jammy/main amd64 gpg-agent amd64 2.2.27-2ubuntu1 [209 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main amd64 libgdbm-compat4 amd64 1.22-1 [6450 B] Get:109 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 linux-libc-dev amd64 5.15.0-13.13 [1273 kB] Get:110 http://ftpmaster.internal/ubuntu jammy/main amd64 lockfile-progs amd64 0.1.19 [10.0 kB] Get:111 http://ftpmaster.internal/ubuntu jammy/main amd64 pkgbinarymangler all 149 [32.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 84.3 MB in 3s (24.5 MB/s) (Reading database ... 13258 files and directories currently installed.) Preparing to unpack .../debconf_1.5.79_all.deb ... Unpacking debconf (1.5.79) over (1.5.77) ... Setting up debconf (1.5.79) ... (Reading database ... 13257 files and directories currently installed.) Preparing to unpack .../libpam0g_1.4.0-10ubuntu2_amd64.deb ... Unpacking libpam0g:amd64 (1.4.0-10ubuntu2) over (1.3.1-5ubuntu11) ... Setting up libpam0g:amd64 (1.4.0-10ubuntu2) ... Checking for services that may need to be restarted...Checking init scripts... Nothing to restart. (Reading database ... 13257 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.26-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.26-1) over (1:4.4.18-4ubuntu2) ... Preparing to unpack .../libcrypt1_1%3a4.4.26-1_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.26-1) over (1:4.4.18-4ubuntu2) ... Setting up libcrypt1:amd64 (1:4.4.26-1) ... (Reading database ... 13257 files and directories currently installed.) Preparing to unpack .../base-files_12ubuntu2_amd64.deb ... Unpacking base-files (12ubuntu2) over (12ubuntu1) ... Setting up base-files (12ubuntu2) ... (Reading database ... 13257 files and directories currently installed.) Preparing to unpack .../debianutils_5.5-1ubuntu1_amd64.deb ... Unpacking debianutils (5.5-1ubuntu1) over (4.11.2build1) ... Setting up debianutils (5.5-1ubuntu1) ... update-alternatives: using /usr/bin/which.debianutils to provide /usr/bin/which (which) in auto mode (Reading database ... 13261 files and directories currently installed.) Preparing to unpack .../bash_5.1-5ubuntu1_amd64.deb ... Unpacking bash (5.1-5ubuntu1) over (5.1-3ubuntu2) ... Setting up bash (5.1-5ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 13261 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.37.2-4ubuntu1_amd64.deb ... Unpacking bsdutils (1:2.37.2-4ubuntu1) over (1:2.36.1-8ubuntu1) ... Setting up bsdutils (1:2.37.2-4ubuntu1) ... (Reading database ... 13261 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.42-3_amd64.deb ... Unpacking libgpg-error0:amd64 (1.42-3) over (1.38-2build2) ... Setting up libgpg-error0:amd64 (1.42-3) ... (Reading database ... 13261 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.9.4-3ubuntu2_amd64.deb ... Unpacking libgcrypt20:amd64 (1.9.4-3ubuntu2) over (1.8.7-5ubuntu2) ... Setting up libgcrypt20:amd64 (1.9.4-3ubuntu2) ... (Reading database ... 13261 files and directories currently installed.) Preparing to unpack .../bzip2_1.0.8-5_amd64.deb ... Unpacking bzip2 (1.0.8-5) over (1.0.8-4ubuntu4) ... Preparing to unpack .../libbz2-1.0_1.0.8-5_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.8-5) over (1.0.8-4ubuntu4) ... Setting up libbz2-1.0:amd64 (1.0.8-5) ... (Reading database ... 13261 files and directories currently installed.) Preparing to unpack .../libcc1-0_11.2.0-12ubuntu1_amd64.deb ... Unpacking libcc1-0:amd64 (11.2.0-12ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../gcc-11-base_11.2.0-12ubuntu1_amd64.deb ... Unpacking gcc-11-base:amd64 (11.2.0-12ubuntu1) over (11.2.0-7ubuntu2) ... Setting up gcc-11-base:amd64 (11.2.0-12ubuntu1) ... (Reading database ... 13261 files and directories currently installed.) Preparing to unpack .../libgcc-s1_11.2.0-12ubuntu1_amd64.deb ... Unpacking libgcc-s1:amd64 (11.2.0-12ubuntu1) over (11.2.0-7ubuntu2) ... Setting up libgcc-s1:amd64 (11.2.0-12ubuntu1) ... (Reading database ... 13261 files and directories currently installed.) Preparing to unpack .../00-libgomp1_11.2.0-12ubuntu1_amd64.deb ... Unpacking libgomp1:amd64 (11.2.0-12ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../01-libitm1_11.2.0-12ubuntu1_amd64.deb ... Unpacking libitm1:amd64 (11.2.0-12ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../02-libatomic1_11.2.0-12ubuntu1_amd64.deb ... Unpacking libatomic1:amd64 (11.2.0-12ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../03-libasan6_11.2.0-12ubuntu1_amd64.deb ... Unpacking libasan6:amd64 (11.2.0-12ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../04-liblsan0_11.2.0-12ubuntu1_amd64.deb ... Unpacking liblsan0:amd64 (11.2.0-12ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../05-libtsan0_11.2.0-12ubuntu1_amd64.deb ... Unpacking libtsan0:amd64 (11.2.0-12ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../06-libubsan1_11.2.0-12ubuntu1_amd64.deb ... Unpacking libubsan1:amd64 (11.2.0-12ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../07-libquadmath0_11.2.0-12ubuntu1_amd64.deb ... Unpacking libquadmath0:amd64 (11.2.0-12ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../08-g++-11_11.2.0-12ubuntu1_amd64.deb ... Unpacking g++-11 (11.2.0-12ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../09-libstdc++-11-dev_11.2.0-12ubuntu1_amd64.deb ... Unpacking libstdc++-11-dev:amd64 (11.2.0-12ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../10-libgcc-11-dev_11.2.0-12ubuntu1_amd64.deb ... Unpacking libgcc-11-dev:amd64 (11.2.0-12ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../11-gcc-11_11.2.0-12ubuntu1_amd64.deb ... Unpacking gcc-11 (11.2.0-12ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../12-cpp-11_11.2.0-12ubuntu1_amd64.deb ... Unpacking cpp-11 (11.2.0-12ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../13-libstdc++6_11.2.0-12ubuntu1_amd64.deb ... Unpacking libstdc++6:amd64 (11.2.0-12ubuntu1) over (11.2.0-7ubuntu2) ... Setting up libstdc++6:amd64 (11.2.0-12ubuntu1) ... (Reading database ... 13263 files and directories currently installed.) Preparing to unpack .../libisl23_0.24-2_amd64.deb ... Unpacking libisl23:amd64 (0.24-2) over (0.24-1build1) ... Preparing to unpack .../libmpc3_1.2.1-1_amd64.deb ... Unpacking libmpc3:amd64 (1.2.1-1) over (1.2.0-1build2) ... Preparing to unpack .../libzstd1_1.4.8+dfsg-3_amd64.deb ... Unpacking libzstd1:amd64 (1.4.8+dfsg-3) over (1.4.8+dfsg-2.1build1) ... Setting up libzstd1:amd64 (1.4.8+dfsg-3) ... (Reading database ... 13263 files and directories currently installed.) Preparing to unpack .../0-libctf0_2.37-10ubuntu1_amd64.deb ... Unpacking libctf0:amd64 (2.37-10ubuntu1) over (2.37-7ubuntu1) ... Preparing to unpack .../1-libctf-nobfd0_2.37-10ubuntu1_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.37-10ubuntu1) over (2.37-7ubuntu1) ... Preparing to unpack .../2-libbinutils_2.37-10ubuntu1_amd64.deb ... Unpacking libbinutils:amd64 (2.37-10ubuntu1) over (2.37-7ubuntu1) ... Preparing to unpack .../3-binutils-common_2.37-10ubuntu1_amd64.deb ... Unpacking binutils-common:amd64 (2.37-10ubuntu1) over (2.37-7ubuntu1) ... Preparing to unpack .../4-binutils_2.37-10ubuntu1_amd64.deb ... Unpacking binutils (2.37-10ubuntu1) over (2.37-7ubuntu1) ... Preparing to unpack .../5-binutils-x86-64-linux-gnu_2.37-10ubuntu1_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.37-10ubuntu1) over (2.37-7ubuntu1) ... Selecting previously unselected package libssl3:amd64. Preparing to unpack .../6-libssl3_3.0.0-1ubuntu2_amd64.deb ... Unpacking libssl3:amd64 (3.0.0-1ubuntu2) ... Setting up libssl3:amd64 (3.0.0-1ubuntu2) ... (Reading database ... 13274 files and directories currently installed.) Preparing to unpack .../libblkid1_2.37.2-4ubuntu1_amd64.deb ... Unpacking libblkid1:amd64 (2.37.2-4ubuntu1) over (2.36.1-8ubuntu1) ... Setting up libblkid1:amd64 (2.37.2-4ubuntu1) ... (Reading database ... 13274 files and directories currently installed.) Preparing to unpack .../libuuid1_2.37.2-4ubuntu1_amd64.deb ... Unpacking libuuid1:amd64 (2.37.2-4ubuntu1) over (2.36.1-8ubuntu1) ... Setting up libuuid1:amd64 (2.37.2-4ubuntu1) ... (Reading database ... 13274 files and directories currently installed.) Preparing to unpack .../libcryptsetup12_2%3a2.4.2-1ubuntu4_amd64.deb ... Unpacking libcryptsetup12:amd64 (2:2.4.2-1ubuntu4) over (2:2.3.6-0ubuntu1) ... Preparing to unpack .../libidn2-0_2.3.2-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.2-2) over (2.3.1-1build1) ... Setting up libidn2-0:amd64 (2.3.2-2) ... (Reading database ... 13276 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.24.0-6_amd64.deb ... Unpacking libp11-kit0:amd64 (0.24.0-6) over (0.23.22-1build1) ... Setting up libp11-kit0:amd64 (0.24.0-6) ... (Reading database ... 13276 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.18.0-4_amd64.deb ... Unpacking libtasn1-6:amd64 (4.18.0-4) over (4.16.0-2build1) ... Setting up libtasn1-6:amd64 (4.18.0-4) ... (Reading database ... 13276 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.2-2ubuntu1_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.2-2ubuntu1) over (3.7.1-5ubuntu1) ... Setting up libgnutls30:amd64 (3.7.2-2ubuntu1) ... (Reading database ... 13276 files and directories currently installed.) Preparing to unpack .../0-systemd-sysv_249.5-2ubuntu2_amd64.deb ... Unpacking systemd-sysv (249.5-2ubuntu2) over (248.3-1ubuntu8) ... Preparing to unpack .../1-systemd-timesyncd_249.5-2ubuntu2_amd64.deb ... Unpacking systemd-timesyncd (249.5-2ubuntu2) over (248.3-1ubuntu8) ... Preparing to unpack .../2-libapparmor1_3.0.3-0ubuntu5_amd64.deb ... Unpacking libapparmor1:amd64 (3.0.3-0ubuntu5) over (3.0.3-0ubuntu1) ... Preparing to unpack .../3-libip4tc2_1.8.7-1ubuntu4_amd64.deb ... Unpacking libip4tc2:amd64 (1.8.7-1ubuntu4) over (1.8.7-1ubuntu3) ... Preparing to unpack .../4-libkmod2_28-1ubuntu5_amd64.deb ... Unpacking libkmod2:amd64 (28-1ubuntu5) over (28-1ubuntu4) ... Preparing to unpack .../5-libpcre2-8-0_10.39-3_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.39-3) over (10.37-0ubuntu2) ... Setting up libpcre2-8-0:amd64 (10.39-3) ... (Reading database ... 13276 files and directories currently installed.) Preparing to unpack .../libselinux1_3.3-1build1_amd64.deb ... Unpacking libselinux1:amd64 (3.3-1build1) over (3.1-3build2) ... Setting up libselinux1:amd64 (3.3-1build1) ... (Reading database ... 13276 files and directories currently installed.) Preparing to unpack .../libmount1_2.37.2-4ubuntu1_amd64.deb ... Unpacking libmount1:amd64 (2.37.2-4ubuntu1) over (2.36.1-8ubuntu1) ... Setting up libmount1:amd64 (2.37.2-4ubuntu1) ... (Reading database ... 13276 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.2-2ubuntu2_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.2-2ubuntu2) over (2.5.1-1ubuntu1) ... Setting up libseccomp2:amd64 (2.5.2-2ubuntu2) ... (Reading database ... 13276 files and directories currently installed.) Preparing to unpack .../login_1%3a4.8.1-2ubuntu1_amd64.deb ... Unpacking login (1:4.8.1-2ubuntu1) over (1:4.8.1-1ubuntu9) ... Setting up login (1:4.8.1-2ubuntu1) ... (Reading database ... 13276 files and directories currently installed.) Preparing to unpack .../util-linux_2.37.2-4ubuntu1_amd64.deb ... Unpacking util-linux (2.37.2-4ubuntu1) over (2.36.1-8ubuntu1) ... Setting up util-linux (2.37.2-4ubuntu1) ... (Reading database ... 13271 files and directories currently installed.) Preparing to unpack .../mount_2.37.2-4ubuntu1_amd64.deb ... Unpacking mount (2.37.2-4ubuntu1) over (2.36.1-8ubuntu1) ... Preparing to unpack .../systemd_249.5-2ubuntu2_amd64.deb ... Unpacking systemd (249.5-2ubuntu2) over (248.3-1ubuntu8) ... Preparing to unpack .../libsystemd0_249.5-2ubuntu2_amd64.deb ... Unpacking libsystemd0:amd64 (249.5-2ubuntu2) over (248.3-1ubuntu8) ... Setting up libsystemd0:amd64 (249.5-2ubuntu2) ... (Reading database ... 13273 files and directories currently installed.) Preparing to unpack .../libudev1_249.5-2ubuntu2_amd64.deb ... Unpacking libudev1:amd64 (249.5-2ubuntu2) over (248.3-1ubuntu8) ... Setting up libudev1:amd64 (249.5-2ubuntu2) ... (Reading database ... 13273 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.3.13_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.3.13) over (2.3.9) ... Setting up libapt-pkg6.0:amd64 (2.3.13) ... (Reading database ... 13273 files and directories currently installed.) Preparing to unpack .../dpkg_1.20.9ubuntu3_amd64.deb ... Unpacking dpkg (1.20.9ubuntu3) over (1.20.9ubuntu2) ... Setting up dpkg (1.20.9ubuntu3) ... (Reading database ... 13273 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20210903+057cd650a4ed-3_amd64.deb ... Unpacking dash (0.5.11+git20210903+057cd650a4ed-3) over (0.5.11+git20210120+802ebd4-1build1) ... Setting up dash (0.5.11+git20210903+057cd650a4ed-3) ... (Reading database ... 13273 files and directories currently installed.) Preparing to unpack .../archives/grep_3.7-1_amd64.deb ... Unpacking grep (3.7-1) over (3.7-0ubuntu1) ... Setting up grep (3.7-1) ... (Reading database ... 13273 files and directories currently installed.) Preparing to unpack .../libncurses6_6.3-1_amd64.deb ... Unpacking libncurses6:amd64 (6.3-1) over (6.2+20201114-2build2) ... Preparing to unpack .../libncursesw6_6.3-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.3-1) over (6.2+20201114-2build2) ... Preparing to unpack .../libtinfo6_6.3-1_amd64.deb ... Unpacking libtinfo6:amd64 (6.3-1) over (6.2+20201114-2build2) ... Setting up libtinfo6:amd64 (6.3-1) ... (Reading database ... 13273 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.3-1_amd64.deb ... Unpacking ncurses-bin (6.3-1) over (6.2+20201114-2build2) ... Setting up ncurses-bin (6.3-1) ... (Reading database ... 13273 files and directories currently installed.) Preparing to unpack .../archives/sed_4.8-1_amd64.deb ... Unpacking sed (4.8-1) over (4.7-1ubuntu2) ... Setting up sed (4.8-1) ... (Reading database ... 13273 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.61_all.deb ... Unpacking init-system-helpers (1.61) over (1.60build1) ... Setting up init-system-helpers (1.61) ... (Reading database ... 13273 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.3-1_all.deb ... Unpacking ncurses-base (6.3-1) over (6.2+20201114-2build2) ... Setting up ncurses-base (6.3-1) ... (Reading database ... 13273 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.27-2ubuntu1_amd64.deb ... Unpacking gpgv (2.2.27-2ubuntu1) over (2.2.20-1ubuntu4) ... Setting up gpgv (2.2.27-2ubuntu1) ... (Reading database ... 13273 files and directories currently installed.) Preparing to unpack .../archives/apt_2.3.13_amd64.deb ... Unpacking apt (2.3.13) over (2.3.9) ... Setting up apt (2.3.13) ... Installing new version of config file /etc/cron.daily/apt-compat ... Selecting previously unselected package libsepol2:amd64. (Reading database ... 13273 files and directories currently installed.) Preparing to unpack .../libsepol2_3.3-1_amd64.deb ... Unpacking libsepol2:amd64 (3.3-1) ... Setting up libsepol2:amd64 (3.3-1) ... (Reading database ... 13277 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.3-1build1_all.deb ... Unpacking libsemanage-common (3.3-1build1) over (3.1-1ubuntu3) ... Setting up libsemanage-common (3.3-1build1) ... Selecting previously unselected package libsemanage2:amd64. (Reading database ... 13277 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.3-1build1_amd64.deb ... Unpacking libsemanage2:amd64 (3.3-1build1) ... Setting up libsemanage2:amd64 (3.3-1build1) ... (Reading database ... 13281 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.8.1-2ubuntu1_amd64.deb ... Unpacking passwd (1:4.8.1-2ubuntu1) over (1:4.8.1-1ubuntu9) ... Setting up passwd (1:4.8.1-2ubuntu1) ... (Reading database ... 13288 files and directories currently installed.) Removing libsemanage1:amd64 (3.1-1ubuntu3) ... (Reading database ... 13284 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.4.0-10ubuntu2_amd64.deb ... Unpacking libpam-modules-bin (1.4.0-10ubuntu2) over (1.3.1-5ubuntu11) ... Setting up libpam-modules-bin (1.4.0-10ubuntu2) ... (Reading database ... 13282 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.4.0-10ubuntu2_amd64.deb ... Unpacking libpam-modules:amd64 (1.4.0-10ubuntu2) over (1.3.1-5ubuntu11) ... Setting up libpam-modules:amd64 (1.4.0-10ubuntu2) ... Installing new version of config file /etc/security/namespace.conf ... Installing new version of config file /etc/security/pam_env.conf ... (Reading database ... 13283 files and directories currently installed.) Preparing to unpack .../logsave_1.46.4-1ubuntu1_amd64.deb ... Unpacking logsave (1.46.4-1ubuntu1) over (1.46.3-1ubuntu3) ... Preparing to unpack .../libext2fs2_1.46.4-1ubuntu1_amd64.deb ... Unpacking libext2fs2:amd64 (1.46.4-1ubuntu1) over (1.46.3-1ubuntu3) ... Setting up libext2fs2:amd64 (1.46.4-1ubuntu1) ... (Reading database ... 13283 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.46.4-1ubuntu1_amd64.deb ... Unpacking e2fsprogs (1.46.4-1ubuntu1) over (1.46.3-1ubuntu3) ... Setting up libapparmor1:amd64 (3.0.3-0ubuntu5) ... Setting up libcryptsetup12:amd64 (2:2.4.2-1ubuntu4) ... Setting up libip4tc2:amd64 (1.8.7-1ubuntu4) ... Setting up libkmod2:amd64 (28-1ubuntu5) ... Setting up mount (2.37.2-4ubuntu1) ... Setting up systemd (249.5-2ubuntu2) ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (249.5-2ubuntu2) ... (Reading database ... 13283 files and directories currently installed.) Preparing to unpack .../archives/init_1.61_amd64.deb ... Unpacking init (1.61) over (1.60build1) ... Preparing to unpack .../libattr1_1%3a2.5.1-1_amd64.deb ... Unpacking libattr1:amd64 (1:2.5.1-1) over (1:2.4.48-6build2) ... Setting up libattr1:amd64 (1:2.5.1-1) ... Installing new version of config file /etc/xattr.conf ... (Reading database ... 13283 files and directories currently installed.) Preparing to unpack .../libcom-err2_1.46.4-1ubuntu1_amd64.deb ... Unpacking libcom-err2:amd64 (1.46.4-1ubuntu1) over (1.46.3-1ubuntu3) ... Setting up libcom-err2:amd64 (1.46.4-1ubuntu1) ... (Reading database ... 13283 files and directories currently installed.) Preparing to unpack .../libk5crypto3_1.19.2-0ubuntu1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.19.2-0ubuntu1) over (1.18.3-6) ... Setting up libk5crypto3:amd64 (1.19.2-0ubuntu1) ... (Reading database ... 13283 files and directories currently installed.) Preparing to unpack .../libkrb5support0_1.19.2-0ubuntu1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.19.2-0ubuntu1) over (1.18.3-6) ... Setting up libkrb5support0:amd64 (1.19.2-0ubuntu1) ... (Reading database ... 13283 files and directories currently installed.) Preparing to unpack .../libkrb5-3_1.19.2-0ubuntu1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.19.2-0ubuntu1) over (1.18.3-6) ... Setting up libkrb5-3:amd64 (1.19.2-0ubuntu1) ... (Reading database ... 13283 files and directories currently installed.) Preparing to unpack .../libgssapi-krb5-2_1.19.2-0ubuntu1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.19.2-0ubuntu1) over (1.18.3-6) ... Setting up libgssapi-krb5-2:amd64 (1.19.2-0ubuntu1) ... (Reading database ... 13283 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.4.0-10ubuntu2_all.deb ... Unpacking libpam-runtime (1.4.0-10ubuntu2) over (1.3.1-5ubuntu11) ... Setting up libpam-runtime (1.4.0-10ubuntu2) ... (Reading database ... 13283 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.37.2-4ubuntu1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.37.2-4ubuntu1) over (2.36.1-8ubuntu1) ... Setting up libsmartcols1:amd64 (2.37.2-4ubuntu1) ... (Reading database ... 13283 files and directories currently installed.) Preparing to unpack .../00-libss2_1.46.4-1ubuntu1_amd64.deb ... Unpacking libss2:amd64 (1.46.4-1ubuntu1) over (1.46.3-1ubuntu3) ... Preparing to unpack .../01-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) over (0.0.14) ... Preparing to unpack .../02-usrmerge_25ubuntu2_all.deb ... Unpacking usrmerge (25ubuntu2) over (25ubuntu1) ... Preparing to unpack .../03-openssl_3.0.0-1ubuntu2_amd64.deb ... Unpacking openssl (3.0.0-1ubuntu2) over (1.1.1l-1ubuntu1) ... Preparing to unpack .../04-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) over (20210119ubuntu1) ... Preparing to unpack .../05-libsqlite3-0_3.36.0-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.36.0-2) over (3.35.5-1) ... Preparing to unpack .../06-tzdata_2021e-1ubuntu1_all.deb ... Unpacking tzdata (2021e-1ubuntu1) over (2021a-2ubuntu1) ... Preparing to unpack .../07-libgdbm6_1.22-1_amd64.deb ... Unpacking libgdbm6:amd64 (1.22-1) over (1.19-2build1) ... Preparing to unpack .../08-dpkg-dev_1.20.9ubuntu3_all.deb ... Unpacking dpkg-dev (1.20.9ubuntu3) over (1.20.9ubuntu2) ... Preparing to unpack .../09-libdpkg-perl_1.20.9ubuntu3_all.deb ... Unpacking libdpkg-perl (1.20.9ubuntu3) over (1.20.9ubuntu2) ... Preparing to unpack .../10-make_4.3-4ubuntu2_amd64.deb ... Unpacking make (4.3-4ubuntu2) over (4.3-4ubuntu1) ... Preparing to unpack .../11-lto-disabled-list_17_all.deb ... Unpacking lto-disabled-list (17) over (16) ... Preparing to unpack .../12-gpg_2.2.27-2ubuntu1_amd64.deb ... Unpacking gpg (2.2.27-2ubuntu1) over (2.2.20-1ubuntu4) ... Preparing to unpack .../13-gpgconf_2.2.27-2ubuntu1_amd64.deb ... Unpacking gpgconf (2.2.27-2ubuntu1) over (2.2.20-1ubuntu4) ... Preparing to unpack .../14-gpg-agent_2.2.27-2ubuntu1_amd64.deb ... Unpacking gpg-agent (2.2.27-2ubuntu1) over (2.2.20-1ubuntu4) ... Preparing to unpack .../15-libgdbm-compat4_1.22-1_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.22-1) over (1.19-2build1) ... Preparing to unpack .../16-linux-libc-dev_5.15.0-13.13_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.15.0-13.13) over (5.13.0-19.19) ... Preparing to unpack .../17-lockfile-progs_0.1.19_amd64.deb ... Unpacking lockfile-progs (0.1.19) over (0.1.18build1) ... Preparing to unpack .../18-pkgbinarymangler_149_all.deb ... Unpacking pkgbinarymangler (149) over (148) ... Setting up lto-disabled-list (17) ... Setting up init (1.61) ... Setting up libsqlite3-0:amd64 (3.36.0-2) ... Setting up binutils-common:amd64 (2.37-10ubuntu1) ... Setting up linux-libc-dev:amd64 (5.15.0-13.13) ... Setting up libctf-nobfd0:amd64 (2.37-10ubuntu1) ... Setting up libgomp1:amd64 (11.2.0-12ubuntu1) ... Setting up bzip2 (1.0.8-5) ... Setting up libasan6:amd64 (11.2.0-12ubuntu1) ... Setting up tzdata (2021e-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Dec 13 17:17:45 UTC 2021. Universal Time is now: Mon Dec 13 17:17:45 UTC 2021. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up make (4.3-4ubuntu2) ... Setting up libncurses6:amd64 (6.3-1) ... Setting up libquadmath0:amd64 (11.2.0-12ubuntu1) ... Setting up libmpc3:amd64 (1.2.1-1) ... Setting up systemd-timesyncd (249.5-2ubuntu2) ... Setting up lockfile-progs (0.1.19) ... Setting up libatomic1:amd64 (11.2.0-12ubuntu1) ... Setting up usrmerge (25ubuntu2) ... Setting up libss2:amd64 (1.46.4-1ubuntu1) ... Setting up libncursesw6:amd64 (6.3-1) ... Setting up libdpkg-perl (1.20.9ubuntu3) ... Setting up logsave (1.46.4-1ubuntu1) ... Setting up libubsan1:amd64 (11.2.0-12ubuntu1) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:amd64 (1:4.4.26-1) ... Setting up gpgconf (2.2.27-2ubuntu1) ... Setting up libbinutils:amd64 (2.37-10ubuntu1) ... Setting up libisl23:amd64 (0.24-2) ... Setting up openssl (3.0.0-1ubuntu2) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libcc1-0:amd64 (11.2.0-12ubuntu1) ... Setting up gpg (2.2.27-2ubuntu1) ... Setting up liblsan0:amd64 (11.2.0-12ubuntu1) ... Setting up libitm1:amd64 (11.2.0-12ubuntu1) ... Setting up libgdbm6:amd64 (1.22-1) ... Setting up libtsan0:amd64 (11.2.0-12ubuntu1) ... Setting up libctf0:amd64 (2.37-10ubuntu1) ... Setting up cpp-11 (11.2.0-12ubuntu1) ... Setting up gpg-agent (2.2.27-2ubuntu1) ... Setting up pkgbinarymangler (149) ... Setting up e2fsprogs (1.46.4-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 7 added, 8 removed; done. Setting up libgdbm-compat4:amd64 (1.22-1) ... Setting up libgcc-11-dev:amd64 (11.2.0-12ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.37-10ubuntu1) ... Setting up binutils (2.37-10ubuntu1) ... Setting up dpkg-dev (1.20.9ubuntu3) ... Setting up libstdc++-11-dev:amd64 (11.2.0-12ubuntu1) ... Setting up gcc-11 (11.2.0-12ubuntu1) ... Setting up g++-11 (11.2.0-12ubuntu1) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22621338 amd64 jammy-proposed -c chroot:build-PACKAGEBUILD-22621338 --arch=amd64 --dist=jammy-proposed --nolog -A kissplice_2.5.4+dfsg-1.dsc Initiating build PACKAGEBUILD-22621338 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-163-generic #171-Ubuntu SMP Fri Nov 5 11:55:11 UTC 2021 x86_64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on lcy02-amd64-045.buildd +==============================================================================+ | kissplice 2.5.4+dfsg-1 (amd64) Mon, 13 Dec 2021 17:17:48 +0000 | +==============================================================================+ Package: kissplice Version: 2.5.4+dfsg-1 Source Version: 2.5.4+dfsg-1 Distribution: jammy-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22621338/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- kissplice_2.5.4+dfsg-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/kissplice-0wjwKW/kissplice-2.5.4+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/kissplice-0wjwKW' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-wn8uxX/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-wn8uxX/apt_archive ./ InRelease Get:2 copy:/<>/resolver-wn8uxX/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-wn8uxX/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-wn8uxX/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-wn8uxX/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libssl1.1 systemd-timesyncd Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 648 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-wn8uxX/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [648 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 648 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13453 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any-amd64 any-arm64 any-mips64 any-mips64el any-ia64 any-ppc64 any-ppc64el any-sparc64) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, cmake, python3-dev, libpython3-stdlib, zlib1g-dev, bcalm Filtered Build-Depends: debhelper-compat (= 13), dh-python, cmake, python3-dev, libpython3-stdlib, zlib1g-dev, bcalm dpkg-deb: building package 'sbuild-build-depends-kissplice-dummy' in '/<>/resolver-wn8uxX/apt_archive/sbuild-build-depends-kissplice-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-kissplice-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-wn8uxX/apt_archive ./ InRelease Get:2 copy:/<>/resolver-wn8uxX/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-wn8uxX/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-wn8uxX/apt_archive ./ Sources [541 B] Get:5 copy:/<>/resolver-wn8uxX/apt_archive ./ Packages [612 B] Fetched 2116 B in 0s (0 B/s) Reading package lists... Reading package lists... Install kissplice build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libssl1.1 systemd-timesyncd Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bcalm bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-elpa-helper dh-python dh-strip-nondeterminism dwz emacsen-common file gettext gettext-base groff-base intltool-debian libaec0 libarchive-zip-perl libarchive13 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgatbcore3 libhdf5-103-1 libicu67 libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp24 libldap-2.5-0 libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libsz2 libtool libuchardet0 libuv1 libxml2 m4 man-db media-types po-debconf python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3.9 python3.9-dev python3.9-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make flit python3-toml gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.9-venv python3.9-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bcalm bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-elpa-helper dh-python dh-strip-nondeterminism dwz emacsen-common file gettext gettext-base groff-base intltool-debian libaec0 libarchive-zip-perl libarchive13 libbrotli1 libcurl4 libdebhelper-perl libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgatbcore3 libhdf5-103-1 libicu67 libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp24 libldap-2.5-0 libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libsz2 libtool libuchardet0 libuv1 libxml2 m4 man-db media-types po-debconf python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3.9 python3.9-dev python3.9-minimal sbuild-build-depends-kissplice-dummy zlib1g-dev 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 44.0 MB of archives. After this operation, 170 MB of additional disk space will be used. Get:1 copy:/<>/resolver-wn8uxX/apt_archive ./ sbuild-build-depends-kissplice-dummy 0.invalid.0 [698 B] Get:2 http://ftpmaster.internal/ubuntu jammy/main amd64 libpython3.9-minimal amd64 3.9.9-1build1 [790 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main amd64 libexpat1 amd64 2.4.1-3 [90.1 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main amd64 python3.9-minimal amd64 3.9.9-1build1 [2072 kB] Get:5 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 python3-minimal amd64 3.9.7-4 [24.7 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main amd64 media-types all 4.0.0 [22.2 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main amd64 libmpdec3 amd64 2.5.1-2build1 [86.8 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main amd64 libpython3.9-stdlib amd64 3.9.9-1build1 [1807 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main amd64 python3.9 amd64 3.9.9-1build1 [437 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libpython3-stdlib amd64 3.9.7-4 [7298 B] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 python3 amd64 3.9.7-4 [22.8 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main amd64 bsdextrautils amd64 2.37.2-4ubuntu1 [71.1 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main amd64 libuchardet0 amd64 0.0.7-1build1 [76.7 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main amd64 groff-base amd64 1.22.4-7 [956 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main amd64 libpipeline1 amd64 1.5.4-1 [23.6 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main amd64 man-db amd64 2.9.4-2build1 [1180 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main amd64 libelf1 amd64 0.186-1 [51.4 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main amd64 libicu67 amd64 67.1-7ubuntu1 [10.1 MB] Get:19 http://ftpmaster.internal/ubuntu jammy/main amd64 libxml2 amd64 2.9.12+dfsg-5 [761 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main amd64 libmagic-mgc amd64 1:5.41-2 [257 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main amd64 libmagic1 amd64 1:5.41-2 [87.3 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main amd64 file amd64 1:5.41-2 [21.5 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main amd64 gettext-base amd64 0.21-4ubuntu3 [36.6 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main amd64 libpsl5 amd64 0.21.0-1.2build1 [57.5 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main amd64 libuv1 amd64 1.42.0-1 [92.3 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main amd64 libsigsegv2 amd64 2.13-1ubuntu2 [14.6 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main amd64 m4 amd64 1.4.18-5ubuntu1 [199 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main amd64 autoconf all 2.71-2 [338 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main amd64 autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main amd64 automake all 1:1.16.5-1.1 [558 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main amd64 autopoint all 0.21-4ubuntu3 [422 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/universe amd64 libgatbcore3 amd64 1.4.2+dfsg-7 [1977 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main amd64 libbrotli1 amd64 1.0.9-2build4 [315 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg2-2build1 [20.6 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main amd64 libsasl2-2 amd64 2.1.27+dfsg2-2build1 [53.9 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main amd64 libldap-2.5-0 amd64 2.5.6+dfsg-1~exp1ubuntu1 [186 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main amd64 libnghttp2-14 amd64 1.43.0-1build2 [76.2 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build3 [58.3 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main amd64 libssh-4 amd64 0.9.6-1build1 [184 kB] Get:40 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libcurl4 amd64 7.74.0-1.3ubuntu3 [274 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/universe amd64 libaec0 amd64 1.0.6-1 [20.1 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/universe amd64 libsz2 amd64 1.0.6-1 [5354 B] Get:43 http://ftpmaster.internal/ubuntu jammy/universe amd64 libhdf5-103-1 amd64 1.10.7+repack-4ubuntu2 [1295 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/universe amd64 bcalm amd64 2.2.3-2 [37.7 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main amd64 libarchive13 amd64 3.4.3-2build1 [362 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main amd64 libjsoncpp24 amd64 1.9.4-5 [80.3 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main amd64 librhash0 amd64 1.4.2-1 [125 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/universe amd64 dh-elpa-helper all 2.0.9ubuntu1 [7610 B] Get:49 http://ftpmaster.internal/ubuntu jammy/main amd64 emacsen-common all 3.0.4 [14.9 kB] Get:50 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 cmake-data all 3.21.4-1ubuntu1 [1886 kB] Get:51 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 cmake amd64 3.21.4-1ubuntu1 [5004 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main amd64 libdebhelper-perl all 13.5.2ubuntu1 [66.0 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main amd64 libtool all 2.4.6-15build1 [164 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main amd64 dh-autoreconf all 20 [16.1 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:57 http://ftpmaster.internal/ubuntu jammy/main amd64 libfile-stripnondeterminism-perl all 1.12.1-1 [18.1 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main amd64 dh-strip-nondeterminism all 1.12.1-1 [5200 B] Get:59 http://ftpmaster.internal/ubuntu jammy/main amd64 libdw1 amd64 0.186-1 [251 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main amd64 debugedit amd64 1:5.0-3 [47.0 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main amd64 dwz amd64 0.14-1build1 [104 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main amd64 gettext amd64 0.21-4ubuntu3 [824 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main amd64 debhelper all 13.5.2ubuntu1 [926 kB] Get:66 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 python3-lib2to3 all 3.9.9-3 [77.7 kB] Get:67 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 python3-distutils all 3.9.9-3 [144 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/universe amd64 dh-python all 5.20211114 [99.8 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main amd64 libexpat1-dev amd64 2.4.1-3 [147 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-8 [321 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main amd64 libjs-underscore all 1.9.1~dfsg-4 [103 kB] Get:72 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libjs-sphinxdoc all 4.3.1-2 [139 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main amd64 libpython3.9 amd64 3.9.9-1build1 [1898 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu7 [164 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main amd64 libpython3.9-dev amd64 3.9.9-1build1 [4881 kB] Get:76 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libpython3-dev amd64 3.9.7-4 [7544 B] Get:77 http://ftpmaster.internal/ubuntu jammy/main amd64 python3.9-dev amd64 3.9.9-1build1 [507 kB] Get:78 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 python3-dev amd64 3.9.7-4 [25.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 44.0 MB in 0s (140 MB/s) Selecting previously unselected package libpython3.9-minimal:amd64. (Reading database ... 13453 files and directories currently installed.) Preparing to unpack .../libpython3.9-minimal_3.9.9-1build1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.9-1build1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.4.1-3_amd64.deb ... Unpacking libexpat1:amd64 (2.4.1-3) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../python3.9-minimal_3.9.9-1build1_amd64.deb ... Unpacking python3.9-minimal (3.9.9-1build1) ... Setting up libpython3.9-minimal:amd64 (3.9.9-1build1) ... Setting up libexpat1:amd64 (2.4.1-3) ... Setting up python3.9-minimal (3.9.9-1build1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13746 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.7-4_amd64.deb ... Unpacking python3-minimal (3.9.7-4) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-2build1_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2build1) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../3-libpython3.9-stdlib_3.9.9-1build1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.9-1build1) ... Selecting previously unselected package python3.9. Preparing to unpack .../4-python3.9_3.9.9-1build1_amd64.deb ... Unpacking python3.9 (3.9.9-1build1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../5-libpython3-stdlib_3.9.7-4_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.7-4) ... Setting up python3-minimal (3.9.7-4) ... Selecting previously unselected package python3. (Reading database ... 14143 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.7-4_amd64.deb ... Unpacking python3 (3.9.7-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../01-bsdextrautils_2.37.2-4ubuntu1_amd64.deb ... Unpacking bsdextrautils (2.37.2-4ubuntu1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.7-1build1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-7_amd64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.4-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.4-1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.4-2build1_amd64.deb ... Unpacking man-db (2.9.4-2build1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../06-libelf1_0.186-1_amd64.deb ... Unpacking libelf1:amd64 (0.186-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../07-libicu67_67.1-7ubuntu1_amd64.deb ... Unpacking libicu67:amd64 (67.1-7ubuntu1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../08-libxml2_2.9.12+dfsg-5_amd64.deb ... Unpacking libxml2:amd64 (2.9.12+dfsg-5) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../09-libmagic-mgc_1%3a5.41-2_amd64.deb ... Unpacking libmagic-mgc (1:5.41-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../10-libmagic1_1%3a5.41-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.41-2) ... Selecting previously unselected package file. Preparing to unpack .../11-file_1%3a5.41-2_amd64.deb ... Unpacking file (1:5.41-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../12-gettext-base_0.21-4ubuntu3_amd64.deb ... Unpacking gettext-base (0.21-4ubuntu3) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../13-libpsl5_0.21.0-1.2build1_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2build1) ... Selecting previously unselected package libuv1:amd64. Preparing to unpack .../14-libuv1_1.42.0-1_amd64.deb ... Unpacking libuv1:amd64 (1.42.0-1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../15-libsigsegv2_2.13-1ubuntu2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1ubuntu2) ... Selecting previously unselected package m4. Preparing to unpack .../16-m4_1.4.18-5ubuntu1_amd64.deb ... Unpacking m4 (1.4.18-5ubuntu1) ... Selecting previously unselected package autoconf. Preparing to unpack .../17-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../18-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../19-automake_1%3a1.16.5-1.1_all.deb ... Unpacking automake (1:1.16.5-1.1) ... Selecting previously unselected package autopoint. Preparing to unpack .../20-autopoint_0.21-4ubuntu3_all.deb ... Unpacking autopoint (0.21-4ubuntu3) ... Selecting previously unselected package libgatbcore3:amd64. Preparing to unpack .../21-libgatbcore3_1.4.2+dfsg-7_amd64.deb ... Unpacking libgatbcore3:amd64 (1.4.2+dfsg-7) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../22-libbrotli1_1.0.9-2build4_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2build4) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../23-libsasl2-modules-db_2.1.27+dfsg2-2build1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg2-2build1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../24-libsasl2-2_2.1.27+dfsg2-2build1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg2-2build1) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../25-libldap-2.5-0_2.5.6+dfsg-1~exp1ubuntu1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.6+dfsg-1~exp1ubuntu1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../26-libnghttp2-14_1.43.0-1build2_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1build2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../27-librtmp1_2.4+20151223.gitfa8646d.1-2build3_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build3) ... Selecting previously unselected package libssh-4:amd64. Preparing to unpack .../28-libssh-4_0.9.6-1build1_amd64.deb ... Unpacking libssh-4:amd64 (0.9.6-1build1) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../29-libcurl4_7.74.0-1.3ubuntu3_amd64.deb ... Unpacking libcurl4:amd64 (7.74.0-1.3ubuntu3) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../30-libaec0_1.0.6-1_amd64.deb ... Unpacking libaec0:amd64 (1.0.6-1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../31-libsz2_1.0.6-1_amd64.deb ... Unpacking libsz2:amd64 (1.0.6-1) ... Selecting previously unselected package libhdf5-103-1:amd64. Preparing to unpack .../32-libhdf5-103-1_1.10.7+repack-4ubuntu2_amd64.deb ... Unpacking libhdf5-103-1:amd64 (1.10.7+repack-4ubuntu2) ... Selecting previously unselected package bcalm. Preparing to unpack .../33-bcalm_2.2.3-2_amd64.deb ... Unpacking bcalm (2.2.3-2) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../34-libarchive13_3.4.3-2build1_amd64.deb ... Unpacking libarchive13:amd64 (3.4.3-2build1) ... Selecting previously unselected package libjsoncpp24:amd64. Preparing to unpack .../35-libjsoncpp24_1.9.4-5_amd64.deb ... Unpacking libjsoncpp24:amd64 (1.9.4-5) ... Selecting previously unselected package librhash0:amd64. Preparing to unpack .../36-librhash0_1.4.2-1_amd64.deb ... Unpacking librhash0:amd64 (1.4.2-1) ... Selecting previously unselected package dh-elpa-helper. Preparing to unpack .../37-dh-elpa-helper_2.0.9ubuntu1_all.deb ... Unpacking dh-elpa-helper (2.0.9ubuntu1) ... Selecting previously unselected package emacsen-common. Preparing to unpack .../38-emacsen-common_3.0.4_all.deb ... Unpacking emacsen-common (3.0.4) ... Selecting previously unselected package cmake-data. Preparing to unpack .../39-cmake-data_3.21.4-1ubuntu1_all.deb ... Unpacking cmake-data (3.21.4-1ubuntu1) ... Selecting previously unselected package cmake. Preparing to unpack .../40-cmake_3.21.4-1ubuntu1_amd64.deb ... Unpacking cmake (3.21.4-1ubuntu1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../41-libdebhelper-perl_13.5.2ubuntu1_all.deb ... Unpacking libdebhelper-perl (13.5.2ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../42-libtool_2.4.6-15build1_all.deb ... Unpacking libtool (2.4.6-15build1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../43-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../44-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../45-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../46-libfile-stripnondeterminism-perl_1.12.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../47-dh-strip-nondeterminism_1.12.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.1-1) ... Selecting previously unselected package libdw1:amd64. Preparing to unpack .../48-libdw1_0.186-1_amd64.deb ... Unpacking libdw1:amd64 (0.186-1) ... Selecting previously unselected package debugedit. Preparing to unpack .../49-debugedit_1%3a5.0-3_amd64.deb ... Unpacking debugedit (1:5.0-3) ... Selecting previously unselected package dwz. Preparing to unpack .../50-dwz_0.14-1build1_amd64.deb ... Unpacking dwz (0.14-1build1) ... Selecting previously unselected package gettext. Preparing to unpack .../51-gettext_0.21-4ubuntu3_amd64.deb ... Unpacking gettext (0.21-4ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../52-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../53-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../54-debhelper_13.5.2ubuntu1_all.deb ... Unpacking debhelper (13.5.2ubuntu1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../55-python3-lib2to3_3.9.9-3_all.deb ... Unpacking python3-lib2to3 (3.9.9-3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../56-python3-distutils_3.9.9-3_all.deb ... Unpacking python3-distutils (3.9.9-3) ... Selecting previously unselected package dh-python. Preparing to unpack .../57-dh-python_5.20211114_all.deb ... Unpacking dh-python (5.20211114) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../58-libexpat1-dev_2.4.1-3_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.4.1-3) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../59-libjs-jquery_3.5.1+dfsg+~3.5.5-8_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-8) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../60-libjs-underscore_1.9.1~dfsg-4_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-4) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../61-libjs-sphinxdoc_4.3.1-2_all.deb ... Unpacking libjs-sphinxdoc (4.3.1-2) ... Selecting previously unselected package libpython3.9:amd64. Preparing to unpack .../62-libpython3.9_3.9.9-1build1_amd64.deb ... Unpacking libpython3.9:amd64 (3.9.9-1build1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../63-zlib1g-dev_1%3a1.2.11.dfsg-2ubuntu7_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu7) ... Selecting previously unselected package libpython3.9-dev:amd64. Preparing to unpack .../64-libpython3.9-dev_3.9.9-1build1_amd64.deb ... Unpacking libpython3.9-dev:amd64 (3.9.9-1build1) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../65-libpython3-dev_3.9.7-4_amd64.deb ... Unpacking libpython3-dev:amd64 (3.9.7-4) ... Selecting previously unselected package python3.9-dev. Preparing to unpack .../66-python3.9-dev_3.9.9-1build1_amd64.deb ... Unpacking python3.9-dev (3.9.9-1build1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../67-python3-dev_3.9.7-4_amd64.deb ... Unpacking python3-dev (3.9.7-4) ... Selecting previously unselected package sbuild-build-depends-kissplice-dummy. Preparing to unpack .../68-sbuild-build-depends-kissplice-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-kissplice-dummy (0.invalid.0) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:amd64 (1.5.4-1) ... Setting up libpsl5:amd64 (0.21.0-1.2build1) ... Setting up bsdextrautils (2.37.2-4ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7ubuntu1) ... Setting up libmagic-mgc (1:5.41-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.5.2ubuntu1) ... Setting up libbrotli1:amd64 (1.0.9-2build4) ... Setting up libnghttp2-14:amd64 (1.43.0-1build2) ... Setting up libmagic1:amd64 (1:5.41-2) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up file (1:5.41-2) ... Setting up libaec0:amd64 (1.0.6-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg2-2build1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:amd64 (1.42.0-1) ... Setting up libexpat1-dev:amd64 (2.4.1-3) ... Setting up emacsen-common (3.0.4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build3) ... Setting up dh-elpa-helper (2.0.9ubuntu1) ... Setting up libsigsegv2:amd64 (2.13-1ubuntu2) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg2-2build1) ... Setting up libssh-4:amd64 (0.9.6-1build1) ... Setting up libgatbcore3:amd64 (1.4.2+dfsg-7) ... Setting up libjsoncpp24:amd64 (1.9.4-5) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu7) ... Setting up librhash0:amd64 (1.4.2-1) ... Setting up libuchardet0:amd64 (0.0.7-1build1) ... Setting up libmpdec3:amd64 (2.5.1-2build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up cmake-data (3.21.4-1ubuntu1) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-8) ... Setting up libelf1:amd64 (0.186-1) ... Setting up libxml2:amd64 (2.9.12+dfsg-5) ... Setting up libsz2:amd64 (1.0.6-1) ... Setting up libpython3.9-stdlib:amd64 (3.9.9-1build1) ... Setting up libpython3-stdlib:amd64 (3.9.7-4) ... Setting up libjs-underscore (1.9.1~dfsg-4) ... Setting up libfile-stripnondeterminism-perl (1.12.1-1) ... Setting up libdw1:amd64 (0.186-1) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libtool (2.4.6-15build1) ... Setting up libarchive13:amd64 (3.4.3-2build1) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up libldap-2.5-0:amd64 (2.5.6+dfsg-1~exp1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython3.9:amd64 (3.9.9-1build1) ... Setting up libjs-sphinxdoc (4.3.1-2) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.1-1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-7) ... Setting up debugedit (1:5.0-3) ... Setting up libcurl4:amd64 (7.74.0-1.3ubuntu3) ... Setting up python3.9 (3.9.9-1build1) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.9-dev:amd64 (3.9.9-1build1) ... Setting up python3 (3.9.7-4) ... Setting up man-db (2.9.4-2build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up libhdf5-103-1:amd64 (1.10.7+repack-4ubuntu2) ... Setting up python3.9-dev (3.9.9-1build1) ... Setting up cmake (3.21.4-1ubuntu1) ... Setting up python3-lib2to3 (3.9.9-3) ... Setting up python3-distutils (3.9.9-3) ... Setting up dh-python (5.20211114) ... Setting up libpython3-dev:amd64 (3.9.7-4) ... Setting up debhelper (13.5.2ubuntu1) ... Setting up bcalm (2.2.3-2) ... Setting up python3-dev (3.9.7-4) ... Setting up sbuild-build-depends-kissplice-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-163-generic amd64 (x86_64) Toolchain package versions: binutils_2.37-10ubuntu1 dpkg-dev_1.20.9ubuntu3 g++-11_11.2.0-12ubuntu1 gcc-11_11.2.0-12ubuntu1 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-12ubuntu1 libstdc++6_11.2.0-12ubuntu1 linux-libc-dev_5.15.0-13.13 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.13 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu2 base-passwd_3.5.52 bash_5.1-5ubuntu1 bcalm_2.2.3-2 binutils_2.37-10ubuntu1 binutils-common_2.37-10ubuntu1 binutils-x86-64-linux-gnu_2.37-10ubuntu1 bsdextrautils_2.37.2-4ubuntu1 bsdutils_1:2.37.2-4ubuntu1 build-essential_12.9ubuntu2 bzip2_1.0.8-5 ca-certificates_20211016 cmake_3.21.4-1ubuntu1 cmake-data_3.21.4-1ubuntu1 coreutils_8.32-4ubuntu3 cpp_4:11.2.0-1ubuntu1 cpp-11_11.2.0-12ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.5.2ubuntu1 debianutils_5.5-1ubuntu1 debugedit_1:5.0-3 dh-autoreconf_20 dh-elpa-helper_2.0.9ubuntu1 dh-python_5.20211114 dh-strip-nondeterminism_1.12.1-1 diffutils_1:3.8-0ubuntu1 dpkg_1.20.9ubuntu3 dpkg-dev_1.20.9ubuntu3 dwz_0.14-1build1 e2fsprogs_1.46.4-1ubuntu1 emacsen-common_3.0.4 fakeroot_1.25.3-1.1ubuntu3 file_1:5.41-2 findutils_4.8.0-1ubuntu2 g++_4:11.2.0-1ubuntu1 g++-11_11.2.0-12ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-11_11.2.0-12ubuntu1 gcc-11-base_11.2.0-12ubuntu1 gettext_0.21-4ubuntu3 gettext-base_0.21-4ubuntu3 gpg_2.2.27-2ubuntu1 gpg-agent_2.2.27-2ubuntu1 gpgconf_2.2.27-2ubuntu1 gpgv_2.2.27-2ubuntu1 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4ubuntu2 hostname_3.23ubuntu1 init_1.61 init-system-helpers_1.61 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu2 libaec0_1.0.6-1 libapparmor1_3.0.3-0ubuntu5 libapt-pkg6.0_2.3.13 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2build1 libargon2-1_0~20171227-0.2build22 libasan6_11.2.0-12ubuntu1 libassuan0_2.5.5-1 libatomic1_11.2.0-12ubuntu1 libattr1_1:2.5.1-1 libaudit-common_1:3.0-2ubuntu3 libaudit1_1:3.0-2ubuntu3 libbinutils_2.37-10ubuntu1 libblkid1_2.37.2-4ubuntu1 libbrotli1_1.0.9-2build4 libbz2-1.0_1.0.8-5 libc-bin_2.34-0ubuntu3 libc-dev-bin_2.34-0ubuntu3 libc6_2.34-0ubuntu3 libc6-dev_2.34-0ubuntu3 libcap-ng0_0.7.9-2.2build2 libcap2_1:2.44-1build2 libcc1-0_11.2.0-12ubuntu1 libcom-err2_1.46.4-1ubuntu1 libcrypt-dev_1:4.4.26-1 libcrypt1_1:4.4.26-1 libcryptsetup12_2:2.4.2-1ubuntu4 libctf-nobfd0_2.37-10ubuntu1 libctf0_2.37-10ubuntu1 libcurl4_7.74.0-1.3ubuntu3 libdb5.3_5.3.28+dfsg1-0.8ubuntu2 libdebconfclient0_0.256ubuntu4 libdebhelper-perl_13.5.2ubuntu1 libdevmapper1.02.1_2:1.02.175-2.1ubuntu3 libdpkg-perl_1.20.9ubuntu3 libdw1_0.186-1 libelf1_0.186-1 libexpat1_2.4.1-3 libexpat1-dev_2.4.1-3 libext2fs2_1.46.4-1ubuntu1 libfakeroot_1.25.3-1.1ubuntu3 libffi8_3.4.2-1ubuntu5 libfile-stripnondeterminism-perl_1.12.1-1 libgatbcore3_1.4.2+dfsg-7 libgcc-11-dev_11.2.0-12ubuntu1 libgcc-s1_11.2.0-12ubuntu1 libgcrypt20_1.9.4-3ubuntu2 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgmp10_2:6.2.1+dfsg-1ubuntu3 libgnutls30_3.7.2-2ubuntu1 libgomp1_11.2.0-12ubuntu1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.19.2-0ubuntu1 libhdf5-103-1_1.10.7+repack-4ubuntu2 libhogweed6_3.7.3-1build1 libicu67_67.1-7ubuntu1 libidn2-0_2.3.2-2 libip4tc2_1.8.7-1ubuntu4 libisl23_0.24-2 libitm1_11.2.0-12ubuntu1 libjs-jquery_3.5.1+dfsg+~3.5.5-8 libjs-sphinxdoc_4.3.1-2 libjs-underscore_1.9.1~dfsg-4 libjson-c5_0.15-2build3 libjsoncpp24_1.9.4-5 libk5crypto3_1.19.2-0ubuntu1 libkeyutils1_1.6.1-2ubuntu2 libkmod2_28-1ubuntu5 libkrb5-3_1.19.2-0ubuntu1 libkrb5support0_1.19.2-0ubuntu1 libldap-2.5-0_2.5.6+dfsg-1~exp1ubuntu1 liblockfile-bin_1.17-1build1 liblockfile1_1.17-1build1 liblsan0_11.2.0-12ubuntu1 liblz4-1_1.9.3-2build1 liblzma5_5.2.5-2build1 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmount1_2.37.2-4ubuntu1 libmpc3_1.2.1-1 libmpdec3_2.5.1-2build1 libmpfr6_4.1.0-3build2 libncurses6_6.3-1 libncursesw6_6.3-1 libnettle8_3.7.3-1build1 libnghttp2-14_1.43.0-1build2 libnpth0_1.6-3build1 libnsl-dev_1.3.0-2build1 libnsl2_1.3.0-2build1 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-10ubuntu2 libpam-modules-bin_1.4.0-10ubuntu2 libpam-runtime_1.4.0-10ubuntu2 libpam0g_1.4.0-10ubuntu2 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13build4 libperl5.32_5.32.1-3ubuntu3 libpipeline1_1.5.4-1 libpng16-16_1.6.37-3build4 libprocps8_2:3.3.17-5ubuntu3 libpsl5_0.21.0-1.2build1 libpython3-dev_3.9.7-4 libpython3-stdlib_3.9.7-4 libpython3.9_3.9.9-1build1 libpython3.9-dev_3.9.9-1build1 libpython3.9-minimal_3.9.9-1build1 libpython3.9-stdlib_3.9.9-1build1 libquadmath0_11.2.0-12ubuntu1 libreadline8_8.1-2build1 librhash0_1.4.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2build3 libsasl2-2_2.1.27+dfsg2-2build1 libsasl2-modules-db_2.1.27+dfsg2-2build1 libseccomp2_2.5.2-2ubuntu2 libselinux1_3.3-1build1 libsemanage-common_3.3-1build1 libsemanage2_3.3-1build1 libsepol1_3.1-1ubuntu2 libsepol2_3.3-1 libsigsegv2_2.13-1ubuntu2 libsmartcols1_2.37.2-4ubuntu1 libsqlite3-0_3.36.0-2 libss2_1.46.4-1ubuntu1 libssh-4_0.9.6-1build1 libssl1.1_1.1.1l-1ubuntu1 libssl3_3.0.0-1ubuntu2 libstdc++-11-dev_11.2.0-12ubuntu1 libstdc++6_11.2.0-12ubuntu1 libsub-override-perl_0.09-2 libsystemd0_249.5-2ubuntu2 libsz2_1.0.6-1 libtasn1-6_4.18.0-4 libtinfo6_6.3-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15build1 libtsan0_11.2.0-12ubuntu1 libubsan1_11.2.0-12ubuntu1 libuchardet0_0.0.7-1build1 libudev1_249.5-2ubuntu2 libunistring2_0.9.10-6 libuuid1_2.37.2-4ubuntu1 libuv1_1.42.0-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2build1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.15.0-13.13 lockfile-progs_0.1.19 login_1:4.8.1-2ubuntu1 logsave_1.46.4-1ubuntu1 lsb-base_11.1.0ubuntu3 lto-disabled-list_17 m4_1.4.18-5ubuntu1 make_4.3-4ubuntu2 man-db_2.9.4-2build1 mawk_1.3.4.20200120-2build1 media-types_4.0.0 mount_2.37.2-4ubuntu1 ncurses-base_6.3-1 ncurses-bin_6.3-1 openssl_3.0.0-1ubuntu2 optipng_0.7.7-2 passwd_1:4.8.1-2ubuntu1 patch_2.7.6-7build1 perl_5.32.1-3ubuntu3 perl-base_5.32.1-3ubuntu3 perl-modules-5.32_5.32.1-3ubuntu3 pinentry-curses_1.1.1-1build1 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 python3_3.9.7-4 python3-dev_3.9.7-4 python3-distutils_3.9.9-3 python3-lib2to3_3.9.9-3 python3-minimal_3.9.7-4 python3.9_3.9.9-1build1 python3.9-dev_3.9.9-1build1 python3.9-minimal_3.9.9-1build1 readline-common_8.1-2build1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kissplice-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 systemd_249.5-2ubuntu2 systemd-sysv_249.5-2ubuntu2 systemd-timesyncd_249.5-2ubuntu2 sysvinit-utils_2.96-7ubuntu2 tar_1.34+dfsg-1build2 tzdata_2021e-1ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu2 util-linux_2.37.2-4ubuntu1 xz-utils_5.2.5-2build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 zlib1g-dev_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Dec 13 07:55:52 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kissplice_2.5.4+dfsg-1.dsc dpkg-source: info: extracting kissplice in /<>/kissplice-2.5.4+dfsg dpkg-source: info: unpacking kissplice_2.5.4+dfsg.orig.tar.xz dpkg-source: info: unpacking kissplice_2.5.4+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-bcalm-install.patch dpkg-source: info: applying tests-2to3.patch dpkg-source: info: applying gcc10.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22621338 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22621338 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22621338 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package kissplice dpkg-buildpackage: info: source version 2.5.4+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/kissplice-2.5.4+dfsg' dh_auto_clean find . -name __pycache__/ -type d | xargs rm -rf make[1]: Leaving directory '/<>/kissplice-2.5.4+dfsg' dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/kissplice-2.5.4+dfsg' dh_auto_configure -- -DCMAKE_INSTALL_LIBEXECDIR=lib/ cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_LIBEXECDIR=lib/ .. CMake Deprecation Warning at CMakeLists.txt:4 (CMAKE_MINIMUM_REQUIRED): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The CXX compiler identification is GNU 11.2.0 -- The C compiler identification is GNU 11.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>/kissplice-2.5.4+dfsg' dh_auto_build cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<>/kissplice-2.5.4+dfsg -B/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/CMakeFiles /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/depend make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/depend make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/depend make[3]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kissplice-2.5.4+dfsg /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kissplice-2.5.4+dfsg /<>/kissplice-2.5.4+dfsg/modules /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_clean_duplicates.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kissplice-2.5.4+dfsg /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kissplice-2.5.4+dfsg /<>/kissplice-2.5.4+dfsg/modules /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_bubble_enumeration.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/build make[3]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/build make[3]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build make[3]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' [ 3%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/commons.c.o [ 3%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o [ 4%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/commons.c.o -MF CMakeFiles/ks_kissreadsSplice.dir/commons.c.o.d -o CMakeFiles/ks_kissreadsSplice.dir/commons.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/commons.c cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o -MF CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o.d -o CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/BubbleEnumeration.cpp cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o -MF CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o.d -o CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/CleanDuplicates.cpp [ 6%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o -MF CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/commons.c [ 7%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o -MF CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o.d -o CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/extension_algorithm.c [ 9%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o -MF CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/extension_algorithm.c [ 11%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o -MF CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/interface_libchash.c [ 12%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o -MF CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o.d -o CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/interface_libchash.c In file included from /<>/kissplice-2.5.4+dfsg/modules/BubbleEnumeration.cpp:61: /<>/kissplice-2.5.4+dfsg/modules/BubbleEnumeration.h:124:1: warning: ‘typedef’ was ignored in this declaration 124 | typedef struct Path { | ^~~~~~~ [ 14%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o -MF CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c [ 15%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o -MF CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o.d -o CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c: In function ‘HashFind’: /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1221:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1221 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c: In function ‘HashFindLast’: /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1226:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1226 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c: In function ‘HashFirstBucket’: /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1290:10: note: in expansion of macro ‘LOAD_AND_RETURN’ 1290 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c: In function ‘HashNextBucket’: /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1300:10: note: in expansion of macro ‘LOAD_AND_RETURN’ 1300 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c: In function ‘HashDoLoad’: /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1407:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1407 | fread(szMagicKey, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1416:4: note: in expansion of macro ‘READ_UL’ 1416 | READ_UL(fp, ht->cchKey); | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1417:4: note: in expansion of macro ‘READ_UL’ 1417 | READ_UL(fp, ht->cItems); | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1418:4: note: in expansion of macro ‘READ_UL’ 1418 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1421:4: note: in expansion of macro ‘READ_UL’ 1421 | READ_UL(fp, cchKey); | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1423:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1423 | fread(rgchKeys, 1, cchKey, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1428:7: note: in expansion of macro ‘READ_UL’ 1428 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c: In function ‘SparseRead’: /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:622:4: note: in expansion of macro ‘READ_UL’ 622 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:627:10: note: in expansion of macro ‘READ_UL’ 627 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c: In function ‘HashFind’: /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1221:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1221 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c: In function ‘HashFindLast’: /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1226:4: note: in expansion of macro ‘LOAD_AND_RETURN’ 1226 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c: In function ‘HashFirstBucket’: /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1290:10: note: in expansion of macro ‘LOAD_AND_RETURN’ 1290 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c: In function ‘HashNextBucket’: /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro ‘READ_UL’ 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1300:10: note: in expansion of macro ‘LOAD_AND_RETURN’ 1300 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c: In function ‘HashDoLoad’: /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1407:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1407 | fread(szMagicKey, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1416:4: note: in expansion of macro ‘READ_UL’ 1416 | READ_UL(fp, ht->cchKey); | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1417:4: note: in expansion of macro ‘READ_UL’ 1417 | READ_UL(fp, ht->cItems); | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1418:4: note: in expansion of macro ‘READ_UL’ 1418 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1421:4: note: in expansion of macro ‘READ_UL’ 1421 | READ_UL(fp, cchKey); | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1423:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1423 | fread(rgchKeys, 1, cchKey, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:1428:7: note: in expansion of macro ‘READ_UL’ 1428 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c: In function ‘SparseRead’: /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:622:4: note: in expansion of macro ‘READ_UL’ 622 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:193:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/libchash.c:627:10: note: in expansion of macro ‘READ_UL’ 627 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ In file included from /<>/kissplice-2.5.4+dfsg/modules/BubbleEnumeration.cpp:61: /<>/kissplice-2.5.4+dfsg/modules/BubbleEnumeration.h: In function ‘bool read_edges_and_nodes_withoptimIO(char*, char*, char*, char*, char*, int*, TEdgeFunctor, TNodeFunctor&) [with TEdgeFunctor = EdgeLoader; TNodeFunctor = NodeLoader]’: /<>/kissplice-2.5.4+dfsg/modules/BubbleEnumeration.h:84:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 84 | fscanf(info_file, "%d \n",&bcc_size ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/BubbleEnumeration.h:85:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 85 | fscanf(info_file, "%d \n",&records_per_file ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/kissplice-2.5.4+dfsg/modules/BubbleEnumeration.cpp:60: /<>/kissplice-2.5.4+dfsg/modules/CGraph.h: In function ‘bool read_node_noncontigous_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with TFunctor = NodeLoader]’: /<>/kissplice-2.5.4+dfsg/modules/CGraph.h:252:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 252 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_node); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/CGraph.h:253:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fscanf(contents_file_node, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/CGraph.h:254:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 254 | fscanf(contents_file_node, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/CGraph.h:265:58: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 265 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, node_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/CGraph.h: In member function ‘void NodeLoader::operator()(FILE*, int)’: /<>/kissplice-2.5.4+dfsg/modules/CGraph.h:215:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | fgets(buffer, 100 * MAX, node_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/CGraph.h: In function ‘void read_edge_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with TFunctor = EdgeLoader]’: /<>/kissplice-2.5.4+dfsg/modules/CGraph.h:330:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 330 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_edge); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/CGraph.h:331:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 331 | fscanf(contents_file_edge, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/CGraph.h:332:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 332 | fscanf(contents_file_edge, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/CGraph.h:339:56: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 339 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, edge_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/CGraph.h: In member function ‘void EdgeLoader::operator()(FILE*, int)’: /<>/kissplice-2.5.4+dfsg/modules/CGraph.h:294:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 294 | fgets(buffer, 100 * MAX, edge_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o -MF CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/outputs.c [ 19%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o -MF CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o.d -o CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/outputs.c [ 20%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o -MF CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/coherent_algorithm.c [ 22%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o -MF CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o.d -o CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/coherent_algorithm.c [ 23%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o -MF CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/couple.c [ 25%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/couple.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/couple.c.o -MF CMakeFiles/ks_kissreadsSplice.dir/couple.c.o.d -o CMakeFiles/ks_kissreadsSplice.dir/couple.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/couple.c [ 26%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o -MF CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/fragment_index.c [ 28%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o -MF CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o.d -o CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/fragment_index.c [ 30%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o -MF CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/kissReads.c [ 31%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o -MF CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o.d -o CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/kissReads.c [ 33%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o -MF CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o.d -o CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/CycleCompression.cpp [ 34%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/list.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/list.c.o -MF CMakeFiles/ks_kissreadsSNPS.dir/list.c.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/list.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/list.c [ 36%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/list.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/list.c.o -MF CMakeFiles/ks_kissreadsSplice.dir/list.c.o.d -o CMakeFiles/ks_kissreadsSplice.dir/list.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/list.c [ 38%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o -MF CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/tree.c [ 39%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/tree.c.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cc -I/<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/tree.c.o -MF CMakeFiles/ks_kissreadsSplice.dir/tree.c.o.d -o CMakeFiles/ks_kissreadsSplice.dir/tree.c.o -c /<>/kissplice-2.5.4+dfsg/thirdparty/kissreads/src/tree.c [ 41%] Linking C executable ../../../lib/kissplice/ks_kissreadsSNPS cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_kissreadsSNPS.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o CMakeFiles/ks_kissreadsSNPS.dir/list.c.o CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o -o ../../../lib/kissplice/ks_kissreadsSNPS -lm -lz [ 42%] Linking C executable ../../../lib/kissplice/ks_kissreadsSplice cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_kissreadsSplice.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_kissreadsSplice.dir/commons.c.o CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o CMakeFiles/ks_kissreadsSplice.dir/couple.c.o CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o CMakeFiles/ks_kissreadsSplice.dir/list.c.o CMakeFiles/ks_kissreadsSplice.dir/tree.c.o -o ../../../lib/kissplice/ks_kissreadsSplice -lm -lz [ 44%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o -MF CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o.d -o CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp: In function ‘void read_graph_edges_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)’: /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1050:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1050 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1051:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1051 | fscanf(contents_file, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1052:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1052 | fscanf(contents_file, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1061:56: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1061 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, data_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1065:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1065 | fgets(buffer, 100 * MAX, data_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp: In function ‘void read_graph_nodes_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)’: /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1097:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1097 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1098:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1098 | fscanf(contents_file, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1099:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1099 | fscanf(contents_file, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1108:58: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1108 | for (int i = 0; i < written_lines_before ; i++) { fgets(buffer, 100 * MAX, data_file); } | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1112:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1112 | fgets(buffer, 100 * MAX, data_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o -MF CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o.d -o CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/CycleCompression.cpp In function ‘list_of_generic_free’, inlined from ‘hash_delete’ at ./thirdparty/kissreads/src/interface_libchash.c:160:3, inlined from ‘free_seeds_index’ at ./thirdparty/kissreads/src/fragment_index.c:324:2: ./thirdparty/kissreads/src/list.c:113:2: warning: ‘free’ called on unallocated object ‘data’ [-Wfree-nonheap-object] ./thirdparty/kissreads/src/list.c: In function ‘free_seeds_index’: ./thirdparty/kissreads/src/interface_libchash.c:152:8: note: declared here In function ‘list_of_generic_free’, inlined from ‘hash_delete’ at ./thirdparty/kissreads/src/interface_libchash.c:160:3, inlined from ‘free_seeds_index’ at ./thirdparty/kissreads/src/fragment_index.c:324:2: ./thirdparty/kissreads/src/list.c:113:2: warning: ‘free’ called on unallocated object ‘data’ [-Wfree-nonheap-object] ./thirdparty/kissreads/src/list.c: In function ‘free_seeds_index’: ./thirdparty/kissreads/src/interface_libchash.c:152:8: note: declared here make[3]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' [ 46%] Built target ks_kissreadsSNPS make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/depend make[3]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kissplice-2.5.4+dfsg /<>/kissplice-2.5.4+dfsg/modules /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_run_modules.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/build make[3]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' [ 47%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/run.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_run_modules.dir/run.cpp.o -MF CMakeFiles/ks_run_modules.dir/run.cpp.o.d -o CMakeFiles/ks_run_modules.dir/run.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/run.cpp make[3]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' [ 47%] Built target ks_kissreadsSplice make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/depend make[3]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kissplice-2.5.4+dfsg /<>/kissplice-2.5.4+dfsg/modules /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_error_removal.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/build make[3]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' [ 49%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o -MF CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o.d -o CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/ErrorRemoval.cpp [ 50%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o -MF CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o.d -o CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp: In function ‘void read_graph_edges_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)’: /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1050:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1050 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1051:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1051 | fscanf(contents_file, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1052:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1052 | fscanf(contents_file, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1061:56: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1061 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, data_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1065:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1065 | fgets(buffer, 100 * MAX, data_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp: In function ‘void read_graph_nodes_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)’: /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1097:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1097 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1098:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1098 | fscanf(contents_file, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1099:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1099 | fscanf(contents_file, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1108:58: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1108 | for (int i = 0; i < written_lines_before ; i++) { fgets(buffer, 100 * MAX, data_file); } | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1112:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1112 | fgets(buffer, 100 * MAX, data_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o -MF CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o.d -o CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/CycleCompression.cpp [ 53%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/CEdge.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_error_removal.dir/CEdge.cpp.o -MF CMakeFiles/ks_error_removal.dir/CEdge.cpp.o.d -o CMakeFiles/ks_error_removal.dir/CEdge.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/CEdge.cpp [ 55%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o -MF CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o.d -o CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/LabelledCEdge.cpp [ 57%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NGraph.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_run_modules.dir/NGraph.cpp.o -MF CMakeFiles/ks_run_modules.dir/NGraph.cpp.o.d -o CMakeFiles/ks_run_modules.dir/NGraph.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp [ 58%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/Utils.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_error_removal.dir/Utils.cpp.o -MF CMakeFiles/ks_error_removal.dir/Utils.cpp.o.d -o CMakeFiles/ks_error_removal.dir/Utils.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/Utils.cpp [ 60%] Linking CXX executable ../lib/kissplice/ks_error_removal cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_error_removal.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o CMakeFiles/ks_error_removal.dir/CEdge.cpp.o CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o CMakeFiles/ks_error_removal.dir/Utils.cpp.o -o ../lib/kissplice/ks_error_removal /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp: In function ‘void read_graph_edges_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)’: /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1050:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1050 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1051:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1051 | fscanf(contents_file, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1052:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1052 | fscanf(contents_file, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1061:56: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1061 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, data_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1065:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1065 | fgets(buffer, 100 * MAX, data_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp: In function ‘void read_graph_nodes_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)’: /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1097:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1097 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1098:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1098 | fscanf(contents_file, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1099:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1099 | fscanf(contents_file, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1108:58: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1108 | for (int i = 0; i < written_lines_before ; i++) { fgets(buffer, 100 * MAX, data_file); } | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/NGraph.cpp:1112:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1112 | fgets(buffer, 100 * MAX, data_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o -MF CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o.d -o CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/CGraph.cpp make[3]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' [ 61%] Built target ks_error_removal make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/depend make[3]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kissplice-2.5.4+dfsg /<>/kissplice-2.5.4+dfsg/modules /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules/CMakeFiles/ks_print_bcc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/build make[3]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o -MF CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o.d -o CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/PrintBcc.cpp [ 65%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o -MF CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o.d -o CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/CEdge.cpp [ 66%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o -MF CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o.d -o CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/LabelledCEdge.cpp In file included from /<>/kissplice-2.5.4+dfsg/modules/PrintBcc.cpp:51: /<>/kissplice-2.5.4+dfsg/modules/BubbleEnumeration.h:124:1: warning: ‘typedef’ was ignored in this declaration 124 | typedef struct Path { | ^~~~~~~ In file included from /<>/kissplice-2.5.4+dfsg/modules/PrintBcc.cpp:51: /<>/kissplice-2.5.4+dfsg/modules/BubbleEnumeration.h: In function ‘bool read_edges_and_nodes_withoptimIO(char*, char*, char*, char*, char*, int*, TEdgeFunctor, TNodeFunctor&) [with TEdgeFunctor = Printer; TNodeFunctor = Printer]’: /<>/kissplice-2.5.4+dfsg/modules/BubbleEnumeration.h:84:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 84 | fscanf(info_file, "%d \n",&bcc_size ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/BubbleEnumeration.h:85:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 85 | fscanf(info_file, "%d \n",&records_per_file ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/kissplice-2.5.4+dfsg/modules/PrintBcc.cpp:50: /<>/kissplice-2.5.4+dfsg/modules/CGraph.h: In function ‘bool read_node_noncontigous_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with TFunctor = Printer]’: /<>/kissplice-2.5.4+dfsg/modules/CGraph.h:252:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 252 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_node); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/CGraph.h:253:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fscanf(contents_file_node, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/CGraph.h:254:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 254 | fscanf(contents_file_node, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/CGraph.h:265:58: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 265 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, node_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/PrintBcc.cpp: In member function ‘void Printer::operator()(FILE*, int)’: /<>/kissplice-2.5.4+dfsg/modules/PrintBcc.cpp:64:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 64 | fgets(buffer, 100 * MAX, in_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/kissplice-2.5.4+dfsg/modules/PrintBcc.cpp:50: /<>/kissplice-2.5.4+dfsg/modules/CGraph.h: In function ‘void read_edge_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with TFunctor = Printer]’: /<>/kissplice-2.5.4+dfsg/modules/CGraph.h:330:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 330 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_edge); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/CGraph.h:331:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 331 | fscanf(contents_file_edge, "%d \n",&written_lines_before ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/CGraph.h:332:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 332 | fscanf(contents_file_edge, "%d \n",&written_lines_for_record ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kissplice-2.5.4+dfsg/modules/CGraph.h:339:56: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 339 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, edge_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 68%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o -MF CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o.d -o CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/NNode.cpp [ 69%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/Utils.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -MF CMakeFiles/ks_print_bcc.dir/Utils.cpp.o.d -o CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/Utils.cpp [ 71%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o -MF CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o.d -o CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/NEdge.cpp [ 73%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o -MF CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o.d -o CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/CGraph.cpp [ 74%] Linking CXX executable ../lib/kissplice/ks_print_bcc cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_print_bcc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -o ../lib/kissplice/ks_print_bcc [ 76%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o -MF CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o.d -o CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/Utils.cpp make[3]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target ks_print_bcc [ 77%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o -MF CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o.d -o CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/CEdge.cpp [ 79%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o -MF CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o.d -o CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/LabelledCEdge.cpp [ 80%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o -MF CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o.d -o CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/NNode.cpp [ 82%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o -MF CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o.d -o CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/NEdge.cpp [ 84%] Linking CXX executable ../lib/kissplice/ks_clean_duplicates cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_clean_duplicates.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o -o ../lib/kissplice/ks_clean_duplicates [ 85%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o -MF CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o.d -o CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/Utils.cpp [ 87%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CGraph.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_run_modules.dir/CGraph.cpp.o -MF CMakeFiles/ks_run_modules.dir/CGraph.cpp.o.d -o CMakeFiles/ks_run_modules.dir/CGraph.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/CGraph.cpp [ 88%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CEdge.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_run_modules.dir/CEdge.cpp.o -MF CMakeFiles/ks_run_modules.dir/CEdge.cpp.o.d -o CMakeFiles/ks_run_modules.dir/CEdge.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/CEdge.cpp [ 90%] Linking CXX executable ../lib/kissplice/ks_bubble_enumeration cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_bubble_enumeration.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o -o ../lib/kissplice/ks_bubble_enumeration [ 92%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o -MF CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o.d -o CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/LabelledCEdge.cpp [ 93%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NNode.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_run_modules.dir/NNode.cpp.o -MF CMakeFiles/ks_run_modules.dir/NNode.cpp.o.d -o CMakeFiles/ks_run_modules.dir/NNode.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/NNode.cpp [ 95%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NEdge.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_run_modules.dir/NEdge.cpp.o -MF CMakeFiles/ks_run_modules.dir/NEdge.cpp.o.d -o CMakeFiles/ks_run_modules.dir/NEdge.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/NEdge.cpp [ 96%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o -MF CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o.d -o CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/SplitBcc.cpp [ 98%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/Utils.cpp.o cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -I/<>/kissplice-2.5.4+dfsg/modules -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT modules/CMakeFiles/ks_run_modules.dir/Utils.cpp.o -MF CMakeFiles/ks_run_modules.dir/Utils.cpp.o.d -o CMakeFiles/ks_run_modules.dir/Utils.cpp.o -c /<>/kissplice-2.5.4+dfsg/modules/Utils.cpp [100%] Linking CXX executable ../lib/kissplice/ks_run_modules cd /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_run_modules.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>/kissplice-2.5.4+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_run_modules.dir/run.cpp.o CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o CMakeFiles/ks_run_modules.dir/NGraph.cpp.o CMakeFiles/ks_run_modules.dir/CGraph.cpp.o CMakeFiles/ks_run_modules.dir/CEdge.cpp.o CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o CMakeFiles/ks_run_modules.dir/NNode.cpp.o CMakeFiles/ks_run_modules.dir/NEdge.cpp.o CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o CMakeFiles/ks_run_modules.dir/Utils.cpp.o -o ../lib/kissplice/ks_run_modules make[3]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' [100%] Built target ks_clean_duplicates make[3]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' [100%] Built target ks_bubble_enumeration make[3]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' [100%] Built target ks_run_modules make[2]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' dh_auto_test cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=--verbose ARGS\+=-j4 make[1]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j4 UpdateCTestConfiguration from :/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: KisspliceBasicTest 1: Test command: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/bin/kissplice "-h" 1: Test timeout computed to be: 10000000 test 2 Start 2: KisspliceDBGTest 2: Test command: /<>/kissplice-2.5.4+dfsg/tests/integration_tests/kisspliceDBGTest.py "/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/bin" 2: Test timeout computed to be: 10000000 test 3 Start 3: KisspliceTwoSequencesTest 3: Test command: /<>/kissplice-2.5.4+dfsg/tests/integration_tests/kisspliceTwoSequencesTest.py "/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/bin" 3: Test timeout computed to be: 10000000 test 4 Start 4: KisspliceGraphAndSequenceTest 4: Test command: /<>/kissplice-2.5.4+dfsg/tests/integration_tests/kisspliceGraphAndSequenceTest.py "/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/bin" 4: Test timeout computed to be: 10000000 1: KISSPLICE_INSTDIR: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/bin 1: KS_SEC_EXEC_PATH: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/lib/kissplice 1: usage: kissplice [-h] [-r READFILES] [-k KVAL] [-b BVAL] [-l LLMAX] 1: [-m LL_MIN] [-M UL_MAX] [-g GRAPH_PREFIX] [-o OUT_DIR] 1: [-d PATH_TO_TMP] [-t NBPROCS] [-s OUTPUT_SNPS] [-v] [-u] 1: [-c MIN_COV] [-C MIN_RELATIVE_COV] [-e MIN_EDIT_DIST] 1: [-y MAX_CYCLES] [--mismatches MISM] [--counts COUNTSMETHOD] 1: [--min_overlap MINOVERLAP] [--timeout TIMEOUT] [--version] 1: [--output-context] [--output-path] [--output-branch-count] 1: [--keep-bccs] [--not-experimental] [--max-memory MAX_MEMORY] 1: [--keep-counts] [--get-mapping-info] [--stranded] 1: [--strandedAbsoluteThreshold STRANDEDABSOLUTETHRESHOLD] 1: [--strandedRelativeThreshold STRANDEDRELATIVETHRESHOLD] 1: 1: kisSplice - local assembly of SNPs, indels and AS events 1: 1: optional arguments: 1: -h, --help show this help message and exit 1: -r READFILES input fasta/q read files or compressed (.gz) fasta/q 1: files (mutiple, such as "-r file1 -r file2...") 1: -k KVAL k-mer size (default=41) 1: -b BVAL maximum number of branching nodes (default 5) 1: -l LLMAX maximal length of the shorter path (default: 2k+1) 1: -m LL_MIN minimum length of the shorter path (default 2k-8) 1: -M UL_MAX maximum length of the longest path (default 1000000), 1: skipped exons longer than UL_MAX are not reported 1: -g GRAPH_PREFIX path and prefix to pre-built de Bruijn graph (suffixed 1: by .edges/.nodes) if jointly used with -r, graph used 1: to find bubbles and reads used for quantification 1: -o OUT_DIR path to store the results and the summary log file 1: (default = ./results) 1: -d PATH_TO_TMP specific directory (absolute path) where to build 1: temporary files (default temporary directory 1: otherwise) 1: -t NBPROCS number of cores (must be <= number of physical cores) 1: -s OUTPUT_SNPS 0, 1 or 2. Changes which types of SNPs will be output. 1: If 0 (default), will not output SNPs. If 1, will 1: output Type0a-SNPs. If 2, will output Type0a and 1: Type0b SNPs (warning: this option may increase a lot 1: the running time. You might also want to try the 1: experimental algorithm here) 1: -v Verbose mode 1: -u keep the nodes/edges file for unfinished bccs 1: -c MIN_COV an integer, k-mers present strictly less than this 1: number of times in the dataset will be discarded 1: (default 2) 1: -C MIN_RELATIVE_COV a percentage from [0,1), edges with relative coverage 1: below this number are removed (default 0.05) 1: -e MIN_EDIT_DIST edit distance threshold, if the two sequences (paths) 1: of a bubble have edit distance smaller than this 1: threshold, the bubble is classified as an inexact 1: repeat (default 3) 1: -y MAX_CYCLES maximal number of bubbles enumeration in each bcc. If 1: exceeded, no bubble is output for the bcc (default 1: 100M) 1: --mismatches MISM Maximal number of substitutions authorized between a 1: read and a fragment (for quantification only), default 1: 2. If you increase the mismatch and use --counts think 1: of increasing min_overlap too. 1: --counts COUNTSMETHOD 1: 0,1 or 2 . Changes how the counts will be reported. If 1: 0 : total counts, if 1: counts on junctions, if 2 1: (default): all counts. see User guide for more 1: information 1: --min_overlap MINOVERLAP 1: Set how many nt must overlap a junction to be counted 1: by --counts option. Default=5. see User guide for more 1: information 1: --timeout TIMEOUT max amount of time (in seconds) spent for enumerating 1: bubbles in each bcc. If exceeded, no bubble is output 1: for the bcc (default 100000) 1: --version show program's version number and exit 1: --output-context Will output the maximum non-ambiguous context of a 1: bubble 1: --output-path Will output the id of the nodes composing the two 1: paths of the bubbles. 1: --output-branch-count 1: Will output the number of branching nodes in each 1: path. 1: --keep-bccs Keep the node/edges files for all bccs. 1: --not-experimental Do not use a new experimental algorithm that searches 1: for bubbles by listing all paths. 1: --max-memory MAX_MEMORY 1: If you use the experimental algorithm, you must 1: provide the maximum size of the process's virtual 1: memory (address space) in megabytes (default 1: unlimited). WARNING: this option does not work on Mac 1: operating systems. 1: --keep-counts Keep the .counts file after the sequencing-errors- 1: removal step. 1: --get-mapping-info Creates a file with the KissReads mapping information 1: of the reads on the bubbles. 1: --stranded Execute kissreads in stranded mode. 1: --strandedAbsoluteThreshold STRANDEDABSOLUTETHRESHOLD 1: Sets the minimum number of reads mapping to a path of 1: a bubble in a read set is needed to call a strand. 1: --strandedRelativeThreshold STRANDEDRELATIVETHRESHOLD 1: If a strand is called for a path of a bubble in a read 1: set, but the proportion of reads calling this strand 1: is less than this threshold, then the strand of the 1: path is set to '?' (any strand - not enough evidence 1: to call a strand). 1/8 Test #1: KisspliceBasicTest ............... Passed 0.05 sec test 5 Start 5: KisspliceGraphTest 5: Test command: /<>/kissplice-2.5.4+dfsg/tests/integration_tests/kisspliceGraphTest.py "/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/bin" 5: Test timeout computed to be: 10000000 5: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/bin/kissplice -s 2 -k 25 -M 1000 -g /<>/kissplice-2.5.4+dfsg/tests/integration_tests/data/graph_HBM75brain_100000_HBM75liver_100000_k25 -C 0 5: b'KISSPLICE_INSTDIR: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/bin\nKS_SEC_EXEC_PATH: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/lib/kissplice\n\nThis is KisSplice, version 2.5.4\n\nThe command line was: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/bin/kissplice -s 2 -k 25 -M 1000 -g /<>/kissplice-2.5.4+dfsg/tests/integration_tests/data/graph_HBM75brain_100000_HBM75liver_100000_k25 -C 0\nUsing the read files: None\nResults will be stored in: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/tests/integration_tests/results\nSummary log file will be saved in: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/tests/integration_tests/results/kissplice_log_summary_17-18-10_13-12-2021_84376\n\n\nElapsed time: 1.430511474609375e-06 seconds\n\n[17:18:10 13/12/2021] --> Finding the BCCs...\n[17:18:10 13/12/2021] --> Done!\nElapsed time: 0.026746749877929688 seconds\n\n[17:18:10 13/12/2021] --> Enumerating all bubbles...\nTotal number of bubbles found: 57.0\n[17:18:10 13/12/2021] --> Done!\nElapsed time: 0.4368250370025635 seconds\n\n[17:18:10 13/12/2021] --> Starting Bubble Output Module\n[17:18:10 13/12/2021] --> Sampling bubbles by type...\n[17:18:10 13/12/2021] --> Done!\nYou can now access all bubbles without read coherency in: results\nElapsed time: 0.0008001327514648438 seconds\n\n\n\n \t\t ******** We are done, final results are in files results/results_graph_HBM75brain_100000_HBM75liver_100000_k25_type_*.fa **********\n\t\t TYPES:\n\t\t\t 0a: Single SNPs, Inexact Repeats or sequencing substitution errors, 83 found\n\t\t\t 0b: Multiple SNPs, Inexact Repeats or sequencing substitution errors, 17 found\n\t\t\t 1: Alternative Splicing Events, 1 found\n\t\t\t 2: Inexact Tandem Repeats, 0 found\n\t\t\t 3: Short Indels (<3nt), 16 found\n\t\t\t 4: All others, composed by a shorter path of length > 2k not being a SNP, 0 found\n\n\n \t\t ******** A summary of the execution can be found in the log file: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/tests/integration_tests/results/kissplice_log_summary_17-18-10_13-12-2021_84376**********\n' 5: kisspliceGraphTest.py: test SUCCESSFUL 2/8 Test #5: KisspliceGraphTest ............... Passed 0.55 sec test 6 Start 6: ksBubbleEnumerationTest 6: Test command: /<>/kissplice-2.5.4+dfsg/tests/functional_tests/ksBubbleEnumerationTest.py "/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/lib/kissplice" 6: Test timeout computed to be: 10000000 6: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/lib/kissplice/ks_bubble_enumeration /<>/kissplice-2.5.4+dfsg/tests/functional_tests/data/graph_info_bcc /<>/kissplice-2.5.4+dfsg/tests/functional_tests/data/graph_contents_edges_bcc /<>/kissplice-2.5.4+dfsg/tests/functional_tests/data/graph_contents_nodes_bcc /<>/kissplice-2.5.4+dfsg/tests/functional_tests/data/graph_all_edges_bcc /<>/kissplice-2.5.4+dfsg/tests/functional_tests/data/graph_all_nodes_bcc 2 25 /<>/kissplice-2.5.4+dfsg/tests/functional_tests/data/test_ks_bubble_enumeration_output 3 bcc_test 0 -u 1000 -L 49 -l 42 -M 10000 -b 5 6: b'\t Enumerating bubbles with at most 5 branching nodes in each path!\n============================================================================\nSummary of results\n============================================================================\nNo of bubbles: 4\n============================================================================\n' 6: Ks_Bubble_Enumeration_Test: test SUCCESSFUL 3/8 Test #6: ksBubbleEnumerationTest .......... Passed 0.02 sec test 7 Start 7: ksRunModulesTest 7: Test command: /<>/kissplice-2.5.4+dfsg/tests/functional_tests/ksRunModulesTest.py "/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/lib/kissplice" 7: Test timeout computed to be: 10000000 7: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/lib/kissplice/ks_run_modules /<>/kissplice-2.5.4+dfsg/tests/functional_tests/data/graph_HBM75brainliver_100000_k25.edges /<>/kissplice-2.5.4+dfsg/tests/functional_tests/data/graph_HBM75brainliver_100000_k25.nodes 25 /<>/kissplice-2.5.4+dfsg/tests/functional_tests/data/test_ks_run_modules_output_graph 7: b'Searching biconnected components...\nNumber of biconnected components found: 109\n\nProcessing component 1...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 2...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 5 nodes.\nDone!\n\nProcessing component 3...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 4...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 5...\nInitial size: 9 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 8 nodes.\nDone!\n\nProcessing component 6...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 7...\nInitial size: 41 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 11.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 30 nodes.\nDone!\n\nProcessing component 8...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 9...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 10...\nInitial size: 68 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 4.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 64 nodes.\nDone!\n\nProcessing component 11...\nInitial size: 54 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 5.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 49 nodes.\nDone!\n\nProcessing component 12...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 13...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 14...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 15...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 16...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 17...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 18...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 5 nodes.\nDone!\n\nProcessing component 19...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 20...\nInitial size: 37 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 37 nodes.\nDone!\n\nProcessing component 21...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 22...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 23...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 24...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 25...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 26...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 27...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 28...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 29...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 30...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 31...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 32...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 33...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 34...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 35...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 6 nodes.\nDone!\n\nProcessing component 36...\nInitial size: 9 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 8 nodes.\nDone!\n\nProcessing component 37...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 38...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 39...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 40...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 41...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 42...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 43...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 44...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 45...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 46...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 47...\nInitial size: 13 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 8.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 5 nodes.\nDone!\n\nProcessing component 48...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 49...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 50...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 51...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 52...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 53...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 54...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 55...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 56...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 57...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 58...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 59...\nInitial size: 8 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 6 nodes.\nDone!\n\nProcessing component 60...\nInitial size: 9 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 8 nodes.\nDone!\n\nProcessing component 61...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 5 nodes.\nDone!\n\nProcessing component 62...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 63...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 64...\nInitial size: 8 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 7 nodes.\nDone!\n\nProcessing component 65...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 66...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 67...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 68...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 5 nodes.\nDone!\n\nProcessing component 69...\nInitial size: 3 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 1 nodes.\nDone!\n\nProcessing component 70...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 4.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 1 nodes.\nDone!\n\nProcessing component 71...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 72...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 73...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 74...\nInitial size: 29 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 8.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 21 nodes.\nDone!\n\nProcessing component 75...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 76...\nInitial size: 8 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 3.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 3.\nFinal size: 1 nodes.\nDone!\n\nProcessing component 77...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 6 nodes.\nDone!\n\nProcessing component 78...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 79...\nInitial size: 7 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 3.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 80...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 81...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 82...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 83...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 84...\nInitial size: 8 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 8 nodes.\nDone!\n\nProcessing component 85...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 86...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 87...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 88...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 89...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 90...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 91...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 92...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 93...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 94...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 95...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 96...\nInitial size: 33 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 5.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 28 nodes.\nDone!\n\nProcessing component 97...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 98...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 99...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 5 nodes.\nDone!\n\nProcessing component 100...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 101...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 102...\nInitial size: 14 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 14 nodes.\nDone!\n\nProcessing component 103...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 104...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 105...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 106...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 107...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 108...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 109...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\n' 7: ks_run_modules: test SUCCESSFUL 4/8 Test #7: ksRunModulesTest ................. Passed 0.04 sec test 8 Start 8: ksErrorRemovalTest 8: Test command: /<>/kissplice-2.5.4+dfsg/tests/functional_tests/ksErrorRemovalTest.py "/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/lib/kissplice" 8: Test timeout computed to be: 10000000 8: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/lib/kissplice/ks_error_removal /<>/kissplice-2.5.4+dfsg/tests/functional_tests/data/graph_HBM75brainliver_100000_k25.edges /<>/kissplice-2.5.4+dfsg/tests/functional_tests/data/graph_HBM75brainliver_100000_k25.abundance 25 0.02/<>/kissplice-2.5.4+dfsg/tests/functional_tests/data/test_ks_error_removal_output 8: b'252 out of 5336 edges removed\n' 8: ks_error_removal: test SUCCESSFUL 5/8 Test #8: ksErrorRemovalTest ............... Passed 0.03 sec 4: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/bin/kissplice -s 2 -k 25 -M 1000 -g /<>/kissplice-2.5.4+dfsg/tests/integration_tests/data/graph_HBM75brain_100000_HBM75liver_100000_k25 -r /<>/kissplice-2.5.4+dfsg/tests/integration_tests/data/HBM75brain_100000.fasta -C 0 4: b'KISSPLICE_INSTDIR: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/bin\nKS_SEC_EXEC_PATH: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/lib/kissplice\n\nThis is KisSplice, version 2.5.4\n\nThe command line was: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/bin/kissplice -s 2 -k 25 -M 1000 -g /<>/kissplice-2.5.4+dfsg/tests/integration_tests/data/graph_HBM75brain_100000_HBM75liver_100000_k25 -r /<>/kissplice-2.5.4+dfsg/tests/integration_tests/data/HBM75brain_100000.fasta -C 0\n-r and -g options used together: \nthe graph will be used to find events, while reads files are used for checking read-coherency and coverage\nUsing the read files: /<>/kissplice-2.5.4+dfsg/tests/integration_tests/data/HBM75brain_100000.fasta\nResults will be stored in: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/tests/integration_tests/results\nSummary log file will be saved in: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/tests/integration_tests/results/kissplice_log_summary_17-18-10_13-12-2021_998290\n\n\nElapsed time: 7.152557373046875e-07 seconds\n\n[17:18:10 13/12/2021] --> Finding the BCCs...\n[17:18:10 13/12/2021] --> Done!\nElapsed time: 0.01925826072692871 seconds\n\n[17:18:10 13/12/2021] --> Enumerating all bubbles...\nTotal number of bubbles found: 57.0\n[17:18:10 13/12/2021] --> Done!\nElapsed time: 0.4160642623901367 seconds\n\n[17:18:10 13/12/2021] --> Starting Bubble Output Module\nBefore checking for read coherency, all bubbles will be written to folder results/results_without_read_coherency\nThis enables you to access them even before the read coherency module finishes, which can take a long time\n[17:18:10 13/12/2021] --> Sampling bubbles by type...\n[17:18:10 13/12/2021] --> Done!\nYou can now access all bubbles without read coherency in: results/results_without_read_coherency\n\n[17:18:10 13/12/2021] --> Computing read coherence and coverage...\n[17:18:11 13/12/2021] --> Done!\n[17:18:11 13/12/2021] --> Sorting all bubbles...\n[17:18:11 13/12/2021] --> Done!\nElapsed time: 0.36397361755371094 seconds\n\n\n\n \t\t ******** We are done, final coherent results are in files results/results_HBM75brain_100000_k25_coherents_type_*.fa ********** \n \t\t ******** All non read coherent results are in files results/results_HBM75brain_100000_k25_uncoherent.fa ****** \n\n\n\t\t TYPES:\n\t\t\t 0a: Single SNPs, Inexact Repeats or sequencing substitution errors, 29 found\n\t\t\t 0b: Multiple SNPs, Inexact Repeats or sequencing substitution errors, 8 found\n\t\t\t 1: Alternative Splicing Events, 0 found\n\t\t\t 2: Inexact Tandem Repeats, 0 found\n\t\t\t 3: Short Indels (<3nt), 14 found\n\t\t\t 4: All others, composed by a shorter path of length > 2k not being a SNP, 0 found\n\n\n \t\t ******** A summary of the execution can be found in the log file: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/tests/integration_tests/results/kissplice_log_summary_17-18-10_13-12-2021_998290**********\n' 4: kisspliceGraphAndSequenceTest.py: test SUCCESSFUL 6/8 Test #4: KisspliceGraphAndSequenceTest .... Passed 0.87 sec 2: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/bin/kissplice -k 25 -M 1000 -r /<>/kissplice-2.5.4+dfsg/tests/integration_tests/data/HBM75brain_100000.fasta -r /<>/kissplice-2.5.4+dfsg/tests/integration_tests/data/HBM75liver_100000.fasta --keep-counts -o /<>/kissplice-2.5.4+dfsg/tests/integration_tests/results 2: diff /<>/kissplice-2.5.4+dfsg/tests/integration_tests/results/graph_HBM75brain_100000_HBM75liver_100000_k25.edges0 /<>/kissplice-2.5.4+dfsg/tests/integration_tests/data/graph_HBM75brain_100000_HBM75liver_100000_k25.edges0 2: diff /<>/kissplice-2.5.4+dfsg/tests/integration_tests/results/graph_HBM75brain_100000_HBM75liver_100000_k25.nodes0 /<>/kissplice-2.5.4+dfsg/tests/integration_tests/data/graph_HBM75brain_100000_HBM75liver_100000_k25.nodes0 2: diff /<>/kissplice-2.5.4+dfsg/tests/integration_tests/results/graph_HBM75brain_100000_HBM75liver_100000_k25.abundance0 /<>/kissplice-2.5.4+dfsg/tests/integration_tests/data/graph_HBM75brain_100000_HBM75liver_100000_k25.abundance0 2: kisspliceDBGTest.py: test SUCCESSFUL 2: rm -r /<>/kissplice-2.5.4+dfsg/tests/integration_tests/results 7/8 Test #2: KisspliceDBGTest ................. Passed 3.38 sec 3: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/bin/kissplice -s 2 -k 25 -M 1000 -r /<>/kissplice-2.5.4+dfsg/tests/integration_tests/data/HBM75brain_100000.fasta -r /<>/kissplice-2.5.4+dfsg/tests/integration_tests/data/HBM75liver_100000.fasta -C 0 3: b'KISSPLICE_INSTDIR: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/bin\nKS_SEC_EXEC_PATH: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/lib/kissplice\n\nThis is KisSplice, version 2.5.4\n\nThe command line was: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/bin/kissplice -s 2 -k 25 -M 1000 -r /<>/kissplice-2.5.4+dfsg/tests/integration_tests/data/HBM75brain_100000.fasta -r /<>/kissplice-2.5.4+dfsg/tests/integration_tests/data/HBM75liver_100000.fasta -C 0\nUsing the read files: /<>/kissplice-2.5.4+dfsg/tests/integration_tests/data/HBM75brain_100000.fasta /<>/kissplice-2.5.4+dfsg/tests/integration_tests/data/HBM75liver_100000.fasta\nResults will be stored in: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/tests/integration_tests/results\nSummary log file will be saved in: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/tests/integration_tests/results/kissplice_log_summary_17-18-10_13-12-2021_530507\n\n\n[17:18:10 13/12/2021] --> Building de Bruijn graph...\nGraph will be written in results/graph_HBM75brain_100000_HBM75liver_100000_k25.[edges/nodes]\n[17:18:13 13/12/2021] --> Done!\nElapsed time: 2.6611945629119873 seconds\nElapsed time: 5.0067901611328125e-06 seconds\n\n[17:18:13 13/12/2021] --> Finding the BCCs...\n[17:18:13 13/12/2021] --> Done!\nElapsed time: 0.018980979919433594 seconds\n\n[17:18:13 13/12/2021] --> Enumerating all bubbles...\nTotal number of bubbles found: 57.0\n[17:18:13 13/12/2021] --> Done!\nElapsed time: 0.3635547161102295 seconds\n\n[17:18:13 13/12/2021] --> Starting Bubble Output Module\nBefore checking for read coherency, all bubbles will be written to folder results/results_without_read_coherency\nThis enables you to access them even before the read coherency module finishes, which can take a long time\n[17:18:13 13/12/2021] --> Sampling bubbles by type...\n[17:18:13 13/12/2021] --> Done!\nYou can now access all bubbles without read coherency in: results/results_without_read_coherency\n\n[17:18:13 13/12/2021] --> Computing read coherence and coverage...\n[17:18:14 13/12/2021] --> Done!\n[17:18:14 13/12/2021] --> Sorting all bubbles...\n[17:18:14 13/12/2021] --> Done!\nElapsed time: 0.6457302570343018 seconds\n\n\n\n \t\t ******** We are done, final coherent results are in files results/results_HBM75brain_100000_HBM75liver_100000_k25_coherents_type_*.fa ********** \n \t\t ******** All non read coherent results are in files results/results_HBM75brain_100000_HBM75liver_100000_k25_uncoherent.fa ****** \n\n\n\t\t TYPES:\n\t\t\t 0a: Single SNPs, Inexact Repeats or sequencing substitution errors, 81 found\n\t\t\t 0b: Multiple SNPs, Inexact Repeats or sequencing substitution errors, 17 found\n\t\t\t 1: Alternative Splicing Events, 1 found\n\t\t\t 2: Inexact Tandem Repeats, 0 found\n\t\t\t 3: Short Indels (<3nt), 16 found\n\t\t\t 4: All others, composed by a shorter path of length > 2k not being a SNP, 0 found\n\n\n \t\t ******** A summary of the execution can be found in the log file: /<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu/tests/integration_tests/results/kissplice_log_summary_17-18-10_13-12-2021_530507**********\n' 3: kisspliceTwoSequencesTest.py: test SUCCESSFUL 8/8 Test #3: KisspliceTwoSequencesTest ........ Passed 3.77 sec 100% tests passed, 0 tests failed out of 8 Total Test time (real) = 3.78 sec make[1]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/kissplice/ cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/<>/kissplice-2.5.4\+dfsg/debian/kissplice AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<>/kissplice-2.5.4+dfsg -B/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/kissplice-2.5.4+dfsg/debian/kissplice/usr/bin/kissplice -- Installing: /<>/kissplice-2.5.4+dfsg/debian/kissplice/usr/lib/kissplice/ks_kissreadsSNPS -- Installing: /<>/kissplice-2.5.4+dfsg/debian/kissplice/usr/lib/kissplice/ks_kissreadsSplice -- Installing: /<>/kissplice-2.5.4+dfsg/debian/kissplice/usr/lib/kissplice/ks_clean_duplicates -- Installing: /<>/kissplice-2.5.4+dfsg/debian/kissplice/usr/lib/kissplice/ks_bubble_enumeration -- Installing: /<>/kissplice-2.5.4+dfsg/debian/kissplice/usr/lib/kissplice/ks_run_modules -- Installing: /<>/kissplice-2.5.4+dfsg/debian/kissplice/usr/lib/kissplice/ks_error_removal -- Installing: /<>/kissplice-2.5.4+dfsg/debian/kissplice/usr/lib/kissplice/ks_print_bcc -- Installing: /<>/kissplice-2.5.4+dfsg/debian/kissplice/usr/share/man/man1/kissplice.1 -- Installing: /<>/kissplice-2.5.4+dfsg/debian/kissplice/usr/share/doc/kissplice/user_guide.pdf make[1]: Leaving directory '/<>/kissplice-2.5.4+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>/kissplice-2.5.4+dfsg' rm -rf debian/kissplice/usr/README.md debian/kissplice/build debian/kissplice/builds mkdir -p debian/kissplice/usr/share/kissplice mv debian/kissplice/usr/bin/kissplice debian/kissplice/usr/share/kissplice/kissplice.py make[1]: Leaving directory '/<>/kissplice-2.5.4+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_python3 I: dh_python3 tools:114: replacing shebang in debian/kissplice/usr/share/kissplice/kissplice.py dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/<>/kissplice-2.5.4+dfsg' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>/kissplice-2.5.4+dfsg' dh_fixperms dh_missing dh_dwz -a dh_strip -a debugedit: debian/kissplice/usr/lib/kissplice/ks_kissreadsSNPS: Unknown DWARF DW_FORM_0x1f21 191cd8eb3e8cb926f2e41e8a7775b9378ae8b7e3 debugedit: debian/kissplice/usr/lib/kissplice/ks_print_bcc: Unknown DWARF DW_FORM_0x1f21 f0c6b1bba63b9f5f453116cd137238b40464c6b5 debugedit: debian/kissplice/usr/lib/kissplice/ks_error_removal: Unknown DWARF DW_FORM_0x1f20 b03ec2643b1435c5ffbb200b64ecabf89ad72a72 debugedit: debian/kissplice/usr/lib/kissplice/ks_bubble_enumeration: Unknown DWARF DW_FORM_0x1f20 8318ee3757b37c948f9979bb04a58017a8f8c338 debugedit: debian/kissplice/usr/lib/kissplice/ks_kissreadsSplice: Unknown DWARF DW_FORM_0x1f21 0cde78f99f3bc23ab0962339f11e83c7433f7305 debugedit: debian/kissplice/usr/lib/kissplice/ks_clean_duplicates: Unknown DWARF DW_FORM_0x1f20 f3c00b10dd11adda62d72bdb2e518762659dcfa9 debugedit: debian/kissplice/usr/lib/kissplice/ks_run_modules: Unknown DWARF DW_FORM_0x1f21 b669931952bab1c043f273d8aa85e2874d7c3e02 dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing kissplice (in debian/kissplice); do_strip: , oemstrip: pkgstriptranslations: processing kissplice-dbgsym (in debian/.debhelper/kissplice/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/kissplice/DEBIAN/control, package kissplice, directory debian/kissplice pkgstripfiles: Truncating usr/share/doc/kissplice/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/.debhelper/kissplice/dbgsym-root/DEBIAN/control, package kissplice-dbgsym, directory debian/.debhelper/kissplice/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package kissplice ... dpkg-deb: building package 'kissplice-dbgsym' in 'debian/.debhelper/scratch-space/build-kissplice/kissplice-dbgsym_2.5.4+dfsg-1_amd64.deb'. pkgstripfiles: No PNG files. dpkg-deb: building package 'kissplice' in '../kissplice_2.5.4+dfsg-1_amd64.deb'. Renaming kissplice-dbgsym_2.5.4+dfsg-1_amd64.deb to kissplice-dbgsym_2.5.4+dfsg-1_amd64.ddeb dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../kissplice_2.5.4+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-12-13T17:18:18Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kissplice_2.5.4+dfsg-1_amd64.changes: ------------------------------------- Format: 1.8 Date: Mon, 13 Dec 2021 08:21:05 +0100 Source: kissplice Binary: kissplice Built-For-Profiles: noudeb Architecture: amd64 Version: 2.5.4+dfsg-1 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: kissplice - Detection of various kinds of polymorphisms in RNA-seq data Changes: kissplice (2.5.4+dfsg-1) unstable; urgency=medium . * Remove bcalm source since there is a separate bcalm package (see #962085) * New upstream version * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * Cleanup rules from references to bcalm and means to build gatb-core Checksums-Sha1: 6a99db66c476e3714a9aa2d22c6767e9ddcd94c3 1890802 kissplice-dbgsym_2.5.4+dfsg-1_amd64.ddeb 98ec310fae56926a4a6e0f30458f50503c906969 7593 kissplice_2.5.4+dfsg-1_amd64.buildinfo 6d78f3e55ca604be2d00e00421cc3d41096f11e2 484032 kissplice_2.5.4+dfsg-1_amd64.deb Checksums-Sha256: 9a91b80618a37bc26bb5966e9ef754e969298d5723e2ed4b84be99582aad3b00 1890802 kissplice-dbgsym_2.5.4+dfsg-1_amd64.ddeb 81d73e45cc3f92091ffa25460b74e390d02937605c4d449443ddadb1d50cc5c5 7593 kissplice_2.5.4+dfsg-1_amd64.buildinfo 5f142688cecb723973ba6b5b8015fbc851e7c8871cee051b64fcdbcc1d12f8f8 484032 kissplice_2.5.4+dfsg-1_amd64.deb Files: fe112808ac38501db0294aee73b52d66 1890802 debug optional kissplice-dbgsym_2.5.4+dfsg-1_amd64.ddeb 8da282cb9d3770fe6effe0bf1a66d84e 7593 science optional kissplice_2.5.4+dfsg-1_amd64.buildinfo d09eb64138ea8527b2fb7160aa0f6962 484032 science optional kissplice_2.5.4+dfsg-1_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: kissplice Binary: kissplice kissplice-dbgsym Architecture: amd64 Version: 2.5.4+dfsg-1 Checksums-Md5: fe112808ac38501db0294aee73b52d66 1890802 kissplice-dbgsym_2.5.4+dfsg-1_amd64.ddeb d09eb64138ea8527b2fb7160aa0f6962 484032 kissplice_2.5.4+dfsg-1_amd64.deb Checksums-Sha1: 6a99db66c476e3714a9aa2d22c6767e9ddcd94c3 1890802 kissplice-dbgsym_2.5.4+dfsg-1_amd64.ddeb 6d78f3e55ca604be2d00e00421cc3d41096f11e2 484032 kissplice_2.5.4+dfsg-1_amd64.deb Checksums-Sha256: 9a91b80618a37bc26bb5966e9ef754e969298d5723e2ed4b84be99582aad3b00 1890802 kissplice-dbgsym_2.5.4+dfsg-1_amd64.ddeb 5f142688cecb723973ba6b5b8015fbc851e7c8871cee051b64fcdbcc1d12f8f8 484032 kissplice_2.5.4+dfsg-1_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Mon, 13 Dec 2021 17:18:18 +0000 Build-Path: /<>/kissplice-2.5.4+dfsg Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 12ubuntu2), base-passwd (= 3.5.52), bash (= 5.1-5ubuntu1), bcalm (= 2.2.3-2), binutils (= 2.37-10ubuntu1), binutils-common (= 2.37-10ubuntu1), binutils-x86-64-linux-gnu (= 2.37-10ubuntu1), bsdextrautils (= 2.37.2-4ubuntu1), bsdutils (= 1:2.37.2-4ubuntu1), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-5), cmake (= 3.21.4-1ubuntu1), cmake-data (= 3.21.4-1ubuntu1), coreutils (= 8.32-4ubuntu3), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-12ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3), debconf (= 1.5.79), debhelper (= 13.5.2ubuntu1), debianutils (= 5.5-1ubuntu1), debugedit (= 1:5.0-3), dh-autoreconf (= 20), dh-elpa-helper (= 2.0.9ubuntu1), dh-python (= 5.20211114), dh-strip-nondeterminism (= 1.12.1-1), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.20.9ubuntu3), dpkg-dev (= 1.20.9ubuntu3), dwz (= 0.14-1build1), emacsen-common (= 3.0.4), file (= 1:5.41-2), findutils (= 4.8.0-1ubuntu2), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-12ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-12ubuntu1), gcc-11-base (= 11.2.0-12ubuntu1), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4ubuntu2), hostname (= 3.23ubuntu1), init-system-helpers (= 1.61), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu2), libaec0 (= 1.0.6-1), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.4.3-2build1), libasan6 (= 11.2.0-12ubuntu1), libatomic1 (= 11.2.0-12ubuntu1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), libaudit1 (= 1:3.0-2ubuntu3), libbinutils (= 2.37-10ubuntu1), libblkid1 (= 2.37.2-4ubuntu1), libbrotli1 (= 1.0.9-2build4), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.34-0ubuntu3), libc-dev-bin (= 2.34-0ubuntu3), libc6 (= 2.34-0ubuntu3), libc6-dev (= 2.34-0ubuntu3), libcap-ng0 (= 0.7.9-2.2build2), libcap2 (= 1:2.44-1build2), libcc1-0 (= 11.2.0-12ubuntu1), libcom-err2 (= 1.46.4-1ubuntu1), libcrypt-dev (= 1:4.4.26-1), libcrypt1 (= 1:4.4.26-1), libctf-nobfd0 (= 2.37-10ubuntu1), libctf0 (= 2.37-10ubuntu1), libcurl4 (= 7.74.0-1.3ubuntu3), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdebconfclient0 (= 0.256ubuntu4), libdebhelper-perl (= 13.5.2ubuntu1), libdpkg-perl (= 1.20.9ubuntu3), libdw1 (= 0.186-1), libelf1 (= 0.186-1), libexpat1 (= 2.4.1-3), libexpat1-dev (= 2.4.1-3), libffi8 (= 3.4.2-1ubuntu5), libfile-stripnondeterminism-perl (= 1.12.1-1), libgatbcore3 (= 1.4.2+dfsg-7), libgcc-11-dev (= 11.2.0-12ubuntu1), libgcc-s1 (= 11.2.0-12ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu2), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgmp10 (= 2:6.2.1+dfsg-1ubuntu3), libgnutls30 (= 3.7.2-2ubuntu1), libgomp1 (= 11.2.0-12ubuntu1), libgpg-error0 (= 1.42-3), libgssapi-krb5-2 (= 1.19.2-0ubuntu1), libhdf5-103-1 (= 1.10.7+repack-4ubuntu2), libhogweed6 (= 3.7.3-1build1), libicu67 (= 67.1-7ubuntu1), libidn2-0 (= 2.3.2-2), libisl23 (= 0.24-2), libitm1 (= 11.2.0-12ubuntu1), libjs-jquery (= 3.5.1+dfsg+~3.5.5-8), libjs-sphinxdoc (= 4.3.1-2), libjs-underscore (= 1.9.1~dfsg-4), libjsoncpp24 (= 1.9.4-5), libk5crypto3 (= 1.19.2-0ubuntu1), libkeyutils1 (= 1.6.1-2ubuntu2), libkrb5-3 (= 1.19.2-0ubuntu1), libkrb5support0 (= 1.19.2-0ubuntu1), libldap-2.5-0 (= 2.5.6+dfsg-1~exp1ubuntu1), liblsan0 (= 11.2.0-12ubuntu1), liblz4-1 (= 1.9.3-2build1), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmount1 (= 2.37.2-4ubuntu1), libmpc3 (= 1.2.1-1), libmpdec3 (= 2.5.1-2build1), libmpfr6 (= 4.1.0-3build2), libncurses6 (= 6.3-1), libncursesw6 (= 6.3-1), libnettle8 (= 3.7.3-1build1), libnghttp2-14 (= 1.43.0-1build2), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libp11-kit0 (= 0.24.0-6), libpam-modules (= 1.4.0-10ubuntu2), libpam-modules-bin (= 1.4.0-10ubuntu2), libpam-runtime (= 1.4.0-10ubuntu2), libpam0g (= 1.4.0-10ubuntu2), libpcre2-8-0 (= 10.39-3), libpcre3 (= 2:8.39-13build4), libperl5.32 (= 5.32.1-3ubuntu3), libpipeline1 (= 1.5.4-1), libprocps8 (= 2:3.3.17-5ubuntu3), libpsl5 (= 0.21.0-1.2build1), libpython3-dev (= 3.9.7-4), libpython3-stdlib (= 3.9.7-4), libpython3.9 (= 3.9.9-1build1), libpython3.9-dev (= 3.9.9-1build1), libpython3.9-minimal (= 3.9.9-1build1), libpython3.9-stdlib (= 3.9.9-1build1), libquadmath0 (= 11.2.0-12ubuntu1), libreadline8 (= 8.1-2build1), librhash0 (= 1.4.2-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build3), libsasl2-2 (= 2.1.27+dfsg2-2build1), libsasl2-modules-db (= 2.1.27+dfsg2-2build1), libseccomp2 (= 2.5.2-2ubuntu2), libselinux1 (= 3.3-1build1), libsigsegv2 (= 2.13-1ubuntu2), libsmartcols1 (= 2.37.2-4ubuntu1), libsqlite3-0 (= 3.36.0-2), libssh-4 (= 0.9.6-1build1), libssl3 (= 3.0.0-1ubuntu2), libstdc++-11-dev (= 11.2.0-12ubuntu1), libstdc++6 (= 11.2.0-12ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 249.5-2ubuntu2), libsz2 (= 1.0.6-1), libtasn1-6 (= 4.18.0-4), libtinfo6 (= 6.3-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15build1), libtsan0 (= 11.2.0-12ubuntu1), libubsan1 (= 11.2.0-12ubuntu1), libuchardet0 (= 0.0.7-1build1), libudev1 (= 249.5-2ubuntu2), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-4ubuntu1), libuv1 (= 1.42.0-1), libxml2 (= 2.9.12+dfsg-5), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.0-13.13), login (= 1:4.8.1-2ubuntu1), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 17), m4 (= 1.4.18-5ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.9.4-2build1), mawk (= 1.3.4.20200120-2build1), media-types (= 4.0.0), ncurses-base (= 6.3-1), ncurses-bin (= 6.3-1), patch (= 2.7.6-7build1), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-5ubuntu3), python3 (= 3.9.7-4), python3-dev (= 3.9.7-4), python3-distutils (= 3.9.9-3), python3-lib2to3 (= 3.9.9-3), python3-minimal (= 3.9.7-4), python3.9 (= 3.9.9-1build1), python3.9-dev (= 3.9.9-1build1), python3.9-minimal (= 3.9.9-1build1), readline-common (= 8.1-2build1), rpcsvc-proto (= 1.4.2-0ubuntu5), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 2.96-7ubuntu2), tar (= 1.34+dfsg-1build2), tzdata (= 2021e-1ubuntu1), util-linux (= 2.37.2-4ubuntu1), xz-utils (= 5.2.5-2build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1639380065" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kissplice_2.5.4+dfsg-1_amd64.deb -------------------------------- new Debian package, version 2.0. size 484032 bytes: control archive=1668 bytes. 962 bytes, 18 lines control 1301 bytes, 18 lines md5sums 295 bytes, 12 lines * postinst #!/bin/sh 404 bytes, 12 lines * prerm #!/bin/sh Package: kissplice Version: 2.5.4+dfsg-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1103 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4), python3:any, bcalm Section: science Priority: optional Homepage: http://kissplice.prabi.fr/ Description: Detection of various kinds of polymorphisms in RNA-seq data KisSplice is a piece of software that enables the analysis of RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows one to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number of biological conditions, and will quantify each variant in each condition. It has been tested on Illumina datasets of up to 1G reads. Its memory consumption is around 5Gb for 100M reads. drwxr-xr-x root/root 0 2021-12-13 07:21 ./ drwxr-xr-x root/root 0 2021-12-13 07:21 ./usr/ drwxr-xr-x root/root 0 2021-12-13 07:21 ./usr/bin/ lrwxrwxrwx root/root 0 2021-12-13 07:21 ./usr/bin/kissplice -> ../share/kissplice/kissplice.py drwxr-xr-x root/root 0 2021-12-13 07:21 ./usr/lib/ drwxr-xr-x root/root 0 2021-12-13 07:21 ./usr/lib/kissplice/ -rwxr-xr-x root/root 129432 2021-12-13 07:21 ./usr/lib/kissplice/ks_bubble_enumeration -rwxr-xr-x root/root 108952 2021-12-13 07:21 ./usr/lib/kissplice/ks_clean_duplicates -rwxr-xr-x root/root 39320 2021-12-13 07:21 ./usr/lib/kissplice/ks_error_removal -rwxr-xr-x root/root 84280 2021-12-13 07:21 ./usr/lib/kissplice/ks_kissreadsSNPS -rwxr-xr-x root/root 84280 2021-12-13 07:21 ./usr/lib/kissplice/ks_kissreadsSplice -rwxr-xr-x root/root 22928 2021-12-13 07:21 ./usr/lib/kissplice/ks_print_bcc -rwxr-xr-x root/root 96664 2021-12-13 07:21 ./usr/lib/kissplice/ks_run_modules drwxr-xr-x root/root 0 2021-12-13 07:21 ./usr/share/ drwxr-xr-x root/root 0 2021-12-13 07:21 ./usr/share/doc-base/ -rw-r--r-- root/root 601 2021-12-13 07:21 ./usr/share/doc-base/kissplice.kissplice drwxr-xr-x root/root 0 2021-12-13 07:21 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-12-13 07:21 ./usr/share/doc/kissplice/ -rw-r--r-- root/root 1338 2021-12-13 07:21 ./usr/share/doc/kissplice/changelog.Debian.gz -rw-r--r-- root/root 2935 2021-12-13 07:21 ./usr/share/doc/kissplice/copyright drwxr-xr-x root/root 0 2021-12-13 07:21 ./usr/share/doc/kissplice/examples/ -rw-r--r-- root/root 22660 2021-06-09 09:48 ./usr/share/doc/kissplice/examples/mock1.fq -rw-r--r-- root/root 35156 2021-06-09 09:48 ./usr/share/doc/kissplice/examples/mock2.fq -rw-r--r-- root/root 30514 2021-06-09 09:48 ./usr/share/doc/kissplice/examples/virus1.fq -rw-r--r-- root/root 22383 2021-06-09 09:48 ./usr/share/doc/kissplice/examples/virus2.fq -rw-r--r-- root/root 364752 2021-06-09 09:49 ./usr/share/doc/kissplice/user_guide.pdf drwxr-xr-x root/root 0 2021-12-13 07:21 ./usr/share/kissplice/ -rwxr-xr-x root/root 51299 2021-12-13 07:21 ./usr/share/kissplice/kissplice.py drwxr-xr-x root/root 0 2021-12-13 07:21 ./usr/share/man/ drwxr-xr-x root/root 0 2021-12-13 07:21 ./usr/share/man/man1/ -rw-r--r-- root/root 1170 2021-12-13 07:21 ./usr/share/man/man1/kissplice.1.gz drwxr-xr-x root/root 0 2021-12-13 07:21 ./usr/share/python3/ drwxr-xr-x root/root 0 2021-12-13 07:21 ./usr/share/python3/runtime.d/ -rwxr-xr-x root/root 141 2021-12-13 07:21 ./usr/share/python3/runtime.d/kissplice.rtupdate +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: n/a Build-Time: 20 Distribution: jammy-proposed Host Architecture: amd64 Install-Time: 10 Job: kissplice_2.5.4+dfsg-1.dsc Machine Architecture: amd64 Package: kissplice Package-Time: 30 Source-Version: 2.5.4+dfsg-1 Space: n/a Status: successful Version: 2.5.4+dfsg-1 -------------------------------------------------------------------------------- Finished at 2021-12-13T17:18:18Z Build needed 00:00:30, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22621338 Scanning for processes to kill in build PACKAGEBUILD-22621338