https://launchpad.net/ubuntu/+source/kleborate/2.3.1-1/+build/25560813 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lgw01-010 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 Buildd toolchain package versions: launchpad-buildd_229~619~ubuntu20.04.1 python3-lpbuildd_229~619~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 6 Feb 17:28:57 ntpdate[1000750]: adjust time server 10.211.37.1 offset -0.000522 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25560813 --image-type chroot /home/buildd/filecache-default/859743d4aa431be74cb50b11ddbd51d0d1ab094f Creating target for build PACKAGEBUILD-25560813 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25560813 Starting target for build PACKAGEBUILD-25560813 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25560813 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-25560813 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25560813 Updating target for build PACKAGEBUILD-25560813 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main riscv64 Packages [1311 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe riscv64 Packages [14.2 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5913 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 Packages [125 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [63.4 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe riscv64 Packages [498 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [240 kB] Fetched 23.5 MB in 34s (686 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: adduser advancecomp apt bash binutils binutils-common binutils-riscv64-linux-gnu coreutils cpp-12 debconf diffutils dpkg dpkg-dev fakeroot g++-12 gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv grep libacl1 libapt-pkg6.0 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libfakeroot libgcc-12-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 liblzma5 libmpfr6 libncurses6 libncursesw6 libp11-kit0 libpcre2-8-0 libperl5.36 libreadline8 libselinux1 libsemanage-common libsemanage2 libsqlite3-0 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libzstd1 linux-libc-dev lsb-base ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.36 pkgbinarymangler readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tzdata xz-utils zlib1g 86 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 85.4 MB of archives. After this operation, 4491 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar/main riscv64 bash riscv64 5.2.15-2ubuntu1 [672 kB] Get:2 http://ftpmaster.internal/ubuntu lunar/main riscv64 coreutils riscv64 9.1-1ubuntu2 [1309 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 diffutils riscv64 1:3.8-4 [167 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libc-bin riscv64 2.37-0ubuntu1 [550 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main riscv64 libcrypt-dev riscv64 1:4.4.33-2 [234 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libc6-dev riscv64 2.37-0ubuntu1 [3134 kB] Get:7 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libc-dev-bin riscv64 2.37-0ubuntu1 [18.8 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main riscv64 libcrypt1 riscv64 1:4.4.33-2 [93.4 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 linux-libc-dev riscv64 6.1.0-14.14 [1408 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main riscv64 libcc1-0 riscv64 12.2.0-14ubuntu1 [42.9 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main riscv64 libctf0 riscv64 2.40-2ubuntu1 [87.4 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main riscv64 libctf-nobfd0 riscv64 2.40-2ubuntu1 [88.9 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main riscv64 binutils-riscv64-linux-gnu riscv64 2.40-2ubuntu1 [820 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main riscv64 libbinutils riscv64 2.40-2ubuntu1 [459 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main riscv64 binutils-common riscv64 2.40-2ubuntu1 [218 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main riscv64 binutils riscv64 2.40-2ubuntu1 [2980 B] Get:17 http://ftpmaster.internal/ubuntu lunar/main riscv64 gcc-12-base riscv64 12.2.0-14ubuntu1 [19.3 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main riscv64 libgcc-s1 riscv64 12.2.0-14ubuntu1 [44.1 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main riscv64 libgomp1 riscv64 12.2.0-14ubuntu1 [111 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main riscv64 libatomic1 riscv64 12.2.0-14ubuntu1 [7878 B] Get:21 http://ftpmaster.internal/ubuntu lunar/main riscv64 libasan8 riscv64 12.2.0-14ubuntu1 [2309 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main riscv64 g++-12 riscv64 12.2.0-14ubuntu1 [9557 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main riscv64 libstdc++-12-dev riscv64 12.2.0-14ubuntu1 [4964 kB] Get:24 http://ftpmaster.internal/ubuntu lunar/main riscv64 libgcc-12-dev riscv64 12.2.0-14ubuntu1 [2633 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main riscv64 gcc-12 riscv64 12.2.0-14ubuntu1 [16.3 MB] Get:26 http://ftpmaster.internal/ubuntu lunar/main riscv64 cpp-12 riscv64 12.2.0-14ubuntu1 [8287 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main riscv64 libstdc++6 riscv64 12.2.0-14ubuntu1 [674 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main riscv64 zlib1g riscv64 1:1.2.13.dfsg-1ubuntu4 [54.0 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main riscv64 libmpfr6 riscv64 4.2.0-1 [260 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main riscv64 libzstd1 riscv64 1.5.2+dfsg2-3 [299 kB] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libc6 riscv64 2.37-0ubuntu1 [2593 kB] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 liblzma5 riscv64 5.4.1-0.1 [115 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main riscv64 libgcrypt20 riscv64 1.10.1-3ubuntu1 [503 kB] Get:34 http://ftpmaster.internal/ubuntu lunar/main riscv64 libacl1 riscv64 2.3.1-3 [15.7 kB] Get:35 http://ftpmaster.internal/ubuntu lunar/main riscv64 libaudit-common all 1:3.0.7-1.1 [5108 B] Get:36 http://ftpmaster.internal/ubuntu lunar/main riscv64 libaudit1 riscv64 1:3.0.7-1.1 [43.4 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libcap2 riscv64 1:2.66-3ubuntu1 [25.2 kB] Get:38 http://ftpmaster.internal/ubuntu lunar/main riscv64 libpcre2-8-0 riscv64 10.42-1 [142 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libselinux1 riscv64 3.4-1build3 [71.3 kB] Get:40 http://ftpmaster.internal/ubuntu lunar/main riscv64 libperl5.36 riscv64 5.36.0-7 [4197 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main riscv64 perl riscv64 5.36.0-7 [235 kB] Get:42 http://ftpmaster.internal/ubuntu lunar/main riscv64 perl-base riscv64 5.36.0-7 [1649 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main riscv64 perl-modules-5.36 all 5.36.0-7 [2984 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main riscv64 libdb5.3 riscv64 5.3.28+dfsg2-1 [691 kB] Get:45 http://ftpmaster.internal/ubuntu lunar/main riscv64 debconf all 1.5.82 [125 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main riscv64 libssl3 riscv64 3.0.7-1ubuntu1 [1438 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/main riscv64 systemd-sysv riscv64 252.4-1ubuntu1 [11.4 kB] Get:48 http://ftpmaster.internal/ubuntu lunar/main riscv64 systemd riscv64 252.4-1ubuntu1 [2814 kB] Get:49 http://ftpmaster.internal/ubuntu lunar/main riscv64 libsystemd-shared riscv64 252.4-1ubuntu1 [1567 kB] Get:50 http://ftpmaster.internal/ubuntu lunar/main riscv64 libp11-kit0 riscv64 0.24.1-2ubuntu1 [196 kB] Get:51 http://ftpmaster.internal/ubuntu lunar/main riscv64 libsystemd0 riscv64 252.4-1ubuntu1 [299 kB] Get:52 http://ftpmaster.internal/ubuntu lunar/main riscv64 libudev1 riscv64 252.4-1ubuntu1 [82.1 kB] Get:53 http://ftpmaster.internal/ubuntu lunar/main riscv64 libapt-pkg6.0 riscv64 2.5.5 [919 kB] Get:54 http://ftpmaster.internal/ubuntu lunar/main riscv64 dpkg riscv64 1.21.19ubuntu3 [1289 kB] Get:55 http://ftpmaster.internal/ubuntu lunar/main riscv64 grep riscv64 3.8-5 [155 kB] Get:56 http://ftpmaster.internal/ubuntu lunar/main riscv64 ncurses-bin riscv64 6.4-2 [177 kB] Get:57 http://ftpmaster.internal/ubuntu lunar/main riscv64 sed riscv64 4.9-1 [191 kB] Get:58 http://ftpmaster.internal/ubuntu lunar/main riscv64 ncurses-base all 6.4-2 [21.3 kB] Get:59 http://ftpmaster.internal/ubuntu lunar/main riscv64 sysvinit-utils riscv64 3.05-7ubuntu2 [27.3 kB] Get:60 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 lsb-base all 11.6 [4606 B] Get:61 http://ftpmaster.internal/ubuntu lunar/main riscv64 adduser all 3.129ubuntu1 [59.0 kB] Get:62 http://ftpmaster.internal/ubuntu lunar/main riscv64 gpgv riscv64 2.2.40-1ubuntu2 [202 kB] Get:63 http://ftpmaster.internal/ubuntu lunar/main riscv64 libgnutls30 riscv64 3.7.8-4ubuntu1 [897 kB] Get:64 http://ftpmaster.internal/ubuntu lunar/main riscv64 apt riscv64 2.5.5 [1338 kB] Get:65 http://ftpmaster.internal/ubuntu lunar/main riscv64 libattr1 riscv64 1:2.5.1-4 [11.4 kB] Get:66 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libsemanage-common all 3.4-1build3 [9808 B] Get:67 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libsemanage2 riscv64 3.4-1build3 [83.5 kB] Get:68 http://ftpmaster.internal/ubuntu lunar/main riscv64 libncurses6 riscv64 6.4-2 [93.3 kB] Get:69 http://ftpmaster.internal/ubuntu lunar/main riscv64 libncursesw6 riscv64 6.4-2 [126 kB] Get:70 http://ftpmaster.internal/ubuntu lunar/main riscv64 libtinfo6 riscv64 6.4-2 [90.6 kB] Get:71 http://ftpmaster.internal/ubuntu lunar/main riscv64 sensible-utils all 0.0.17+nmu1 [19.3 kB] Get:72 http://ftpmaster.internal/ubuntu lunar/main riscv64 readline-common all 8.2-1.3 [55.7 kB] Get:73 http://ftpmaster.internal/ubuntu lunar/main riscv64 libreadline8 riscv64 8.2-1.3 [131 kB] Get:74 http://ftpmaster.internal/ubuntu lunar/main riscv64 libsqlite3-0 riscv64 3.40.1-1 [583 kB] Get:75 http://ftpmaster.internal/ubuntu lunar/main riscv64 openssl riscv64 3.0.7-1ubuntu1 [1141 kB] Get:76 http://ftpmaster.internal/ubuntu lunar/main riscv64 tzdata all 2022g-2ubuntu1 [397 kB] Get:77 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 xz-utils riscv64 5.4.1-0.1 [263 kB] Get:78 http://ftpmaster.internal/ubuntu lunar/main riscv64 advancecomp riscv64 2.5-1 [216 kB] Get:79 http://ftpmaster.internal/ubuntu lunar/main riscv64 dpkg-dev all 1.21.19ubuntu3 [1067 kB] Get:80 http://ftpmaster.internal/ubuntu lunar/main riscv64 libdpkg-perl all 1.21.19ubuntu3 [247 kB] Get:81 http://ftpmaster.internal/ubuntu lunar/main riscv64 libfakeroot riscv64 1.30.1-1.1ubuntu1 [26.5 kB] Get:82 http://ftpmaster.internal/ubuntu lunar/main riscv64 fakeroot riscv64 1.30.1-1.1ubuntu1 [68.0 kB] Get:83 http://ftpmaster.internal/ubuntu lunar/main riscv64 gpg riscv64 2.2.40-1ubuntu2 [491 kB] Get:84 http://ftpmaster.internal/ubuntu lunar/main riscv64 gpgconf riscv64 2.2.40-1ubuntu2 [119 kB] Get:85 http://ftpmaster.internal/ubuntu lunar/main riscv64 gpg-agent riscv64 2.2.40-1ubuntu2 [239 kB] Get:86 http://ftpmaster.internal/ubuntu lunar/main riscv64 pkgbinarymangler all 151 [16.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 85.4 MB in 53s (1597 kB/s) (Reading database ... 13011 files and directories currently installed.) Preparing to unpack .../bash_5.2.15-2ubuntu1_riscv64.deb ... Unpacking bash (5.2.15-2ubuntu1) over (5.2-1ubuntu2) ... Setting up bash (5.2.15-2ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 13011 files and directories currently installed.) Preparing to unpack .../coreutils_9.1-1ubuntu2_riscv64.deb ... Unpacking coreutils (9.1-1ubuntu2) over (8.32-4.1ubuntu1) ... Setting up coreutils (9.1-1ubuntu2) ... (Reading database ... 13011 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.8-4_riscv64.deb ... Unpacking diffutils (1:3.8-4) over (1:3.8-1) ... Setting up diffutils (1:3.8-4) ... (Reading database ... 13011 files and directories currently installed.) Preparing to unpack .../libc-bin_2.37-0ubuntu1_riscv64.deb ... Unpacking libc-bin (2.37-0ubuntu1) over (2.36-0ubuntu4) ... Setting up libc-bin (2.37-0ubuntu1) ... 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Setting up gpg (2.2.40-1ubuntu2) ... Setting up systemd-sysv (252.4-1ubuntu1) ... Setting up gpg-agent (2.2.40-1ubuntu2) ... Setting up libstdc++-12-dev:riscv64 (12.2.0-14ubuntu1) ... Setting up dpkg-dev (1.21.19ubuntu3) ... Setting up gcc-12 (12.2.0-14ubuntu1) ... Setting up g++-12 (12.2.0-14ubuntu1) ... Processing triggers for debianutils (5.7-0.4) ... Processing triggers for libc-bin (2.37-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-25560813 riscv64 lunar-proposed -c chroot:build-PACKAGEBUILD-25560813 --arch=riscv64 --dist=lunar-proposed --nolog kleborate_2.3.1-1.dsc Initiating build PACKAGEBUILD-25560813 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lgw01-010.buildd +==============================================================================+ | kleborate 2.3.1-1 (riscv64) Mon, 06 Feb 2023 17:37:47 +0000 | +==============================================================================+ Package: kleborate Version: 2.3.1-1 Source Version: 2.3.1-1 Distribution: lunar-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-25560813/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/kleborate-dmh1UY/resolver-vxONg9' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- kleborate_2.3.1-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/kleborate-dmh1UY/kleborate-2.3.1' with '<>' I: NOTICE: Log filtering will replace 'build/kleborate-dmh1UY' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, ncbi-blast+, mash, kaptive, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, ncbi-blast+, mash, kaptive, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [419 B] Get:5 copy:/<>/apt_archive ./ Packages [491 B] Fetched 1867 B in 1s (2837 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-urw-base35 gettext gettext-base groff-base intltool-debian kaptive libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcapnp-0.9.2 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmpdec3 libmurmurhash2 libopenjp2-7 libpcre3 libpipeline1 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libpython3.11-minimal libpython3.11-stdlib libraqm0 libsub-override-perl libtiff6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap man-db mash media-types mime-support ncbi-blast+ ncbi-data po-debconf python3 python3-biopython python3-distutils python3-lib2to3 python3-minimal python3-numpy python3-pil python3-pkg-resources python3-renderpm python3-reportlab python3-reportlab-accel python3-setuptools python3.10 python3.10-minimal python3.11 python3.11-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build python3-tomli python3-installer fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev groff kaptive-data kaptive-example low-memory-monitor gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise gfortran python3-dev python3-pytest python-pil-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-setuptools-doc python3.10-venv python3.10-doc binfmt-support python3.11-venv python3.11-doc sgml-base-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl python-biopython-doc python3-olefile The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-urw-base35 gettext gettext-base groff-base intltool-debian kaptive libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcapnp-0.9.2 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmpdec3 libmurmurhash2 libopenjp2-7 libpcre3 libpipeline1 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libpython3.11-minimal libpython3.11-stdlib libraqm0 libsub-override-perl libtiff6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap man-db mash media-types mime-support ncbi-blast+ ncbi-data po-debconf python3 python3-biopython python3-distutils python3-lib2to3 python3-minimal python3-numpy python3-pil python3-pkg-resources python3-renderpm python3-reportlab python3-reportlab-accel python3-setuptools python3.10 python3.10-minimal python3.11 python3.11-minimal sbuild-build-depends-main-dummy sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 106 newly installed, 0 to remove and 0 not upgraded. Need to get 74.2 MB of archives. After this operation, 262 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [720 B] Get:2 http://ftpmaster.internal/ubuntu lunar/main riscv64 libpython3.11-minimal riscv64 3.11.1-2 [816 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main riscv64 libexpat1 riscv64 2.5.0-1 [77.1 kB] Get:4 http://ftpmaster.internal/ubuntu lunar/main riscv64 python3.11-minimal riscv64 3.11.1-2 [1875 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 python3-minimal riscv64 3.11.1-3 [24.6 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 media-types all 9.0.0 [26.0 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main riscv64 mailcap all 3.70+nmu1ubuntu1 [23.8 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main riscv64 mime-support all 3.66 [3696 B] Get:9 http://ftpmaster.internal/ubuntu lunar/main riscv64 libmpdec3 riscv64 2.5.1-2build2 [85.3 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main riscv64 libpython3.11-stdlib riscv64 3.11.1-2 [1726 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main riscv64 python3.11 riscv64 3.11.1-2 [561 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libpython3-stdlib riscv64 3.11.1-3 [7208 B] Get:13 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 python3 riscv64 3.11.1-3 [22.9 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main riscv64 libpython3.10-minimal riscv64 3.10.9-1 [789 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main riscv64 python3.10-minimal riscv64 3.10.9-1 [1792 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main riscv64 sgml-base all 1.31 [11.4 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main riscv64 libbsd0 riscv64 0.11.7-2 [40.3 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main riscv64 libelf1 riscv64 0.188-2.1 [49.1 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main riscv64 libfribidi0 riscv64 1.0.8-2.1ubuntu1 [25.8 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main riscv64 libglib2.0-0 riscv64 2.74.5-1 [1313 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main riscv64 libpython3.10-stdlib riscv64 3.10.9-1 [1697 kB] Get:22 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libicu72 riscv64 72.1-3ubuntu1 [10.7 MB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libxml2 riscv64 2.9.14+dfsg-1.1build1 [598 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 python3-pkg-resources all 66.1.1-1 [225 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main riscv64 python3.10 riscv64 3.10.9-1 [503 kB] Get:26 http://ftpmaster.internal/ubuntu lunar/main riscv64 bsdextrautils riscv64 2.38.1-4ubuntu1 [81.6 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main riscv64 libmagic-mgc riscv64 1:5.44-3 [293 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main riscv64 libmagic1 riscv64 1:5.44-3 [85.1 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main riscv64 file riscv64 1:5.44-3 [21.0 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main riscv64 gettext-base riscv64 0.21-11 [37.3 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main riscv64 libuchardet0 riscv64 0.0.7-1build2 [78.9 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main riscv64 groff-base riscv64 1.22.4-9 [906 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main riscv64 liblmdb0 riscv64 0.9.24-1build2 [46.0 kB] Get:34 http://ftpmaster.internal/ubuntu lunar/main riscv64 libpipeline1 riscv64 1.5.7-1 [26.8 kB] Get:35 http://ftpmaster.internal/ubuntu lunar/main riscv64 libxau6 riscv64 1:1.0.9-1build5 [6836 B] Get:36 http://ftpmaster.internal/ubuntu lunar/main riscv64 libxdmcp6 riscv64 1:1.1.3-0ubuntu5 [10.3 kB] Get:37 http://ftpmaster.internal/ubuntu lunar/main riscv64 libxcb1 riscv64 1.15-1 [42.1 kB] Get:38 http://ftpmaster.internal/ubuntu lunar/main riscv64 man-db riscv64 2.11.2-1 [1177 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 m4 riscv64 1.4.19-3 [243 kB] Get:40 http://ftpmaster.internal/ubuntu lunar/main riscv64 autoconf all 2.71-3 [339 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main riscv64 autotools-dev all 20220109.1 [44.9 kB] Get:42 http://ftpmaster.internal/ubuntu lunar/main riscv64 automake all 1:1.16.5-1.3 [558 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main riscv64 autopoint all 0.21-11 [420 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main riscv64 libdebhelper-perl all 13.11.4ubuntu3 [66.1 kB] Get:45 http://ftpmaster.internal/ubuntu lunar/main riscv64 libtool all 2.4.7-5 [166 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main riscv64 dh-autoreconf all 20 [16.1 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/main riscv64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:48 http://ftpmaster.internal/ubuntu lunar/main riscv64 libsub-override-perl all 0.09-4 [8706 B] Get:49 http://ftpmaster.internal/ubuntu lunar/main riscv64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:50 http://ftpmaster.internal/ubuntu lunar/main riscv64 dh-strip-nondeterminism all 1.13.1-1 [5362 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[1962 kB] Get:71 http://ftpmaster.internal/ubuntu lunar/main riscv64 python3-numpy riscv64 1:1.24.1-2 [3987 kB] Get:72 http://ftpmaster.internal/ubuntu lunar/main riscv64 python3-renderpm riscv64 3.6.12-1 [58.7 kB] Get:73 http://ftpmaster.internal/ubuntu lunar/main riscv64 python3-reportlab-accel riscv64 3.6.12-1 [21.9 kB] Get:74 http://ftpmaster.internal/ubuntu lunar/main riscv64 libimagequant0 riscv64 2.17.0-1 [32.1 kB] Get:75 http://ftpmaster.internal/ubuntu lunar/main riscv64 libjpeg-turbo8 riscv64 2.1.2-0ubuntu1 [113 kB] Get:76 http://ftpmaster.internal/ubuntu lunar/main riscv64 libjpeg8 riscv64 8c-2ubuntu10 [2270 B] Get:77 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 liblcms2-2 riscv64 2.14-1build1 [145 kB] Get:78 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libopenjp2-7 riscv64 2.5.0-1build1 [175 kB] Get:79 http://ftpmaster.internal/ubuntu lunar/main riscv64 libgraphite2-3 riscv64 1.3.14-1build2 [71.5 kB] Get:80 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libharfbuzz0b riscv64 6.0.0+dfsg-3build1 [443 kB] Get:81 http://ftpmaster.internal/ubuntu lunar/main riscv64 libraqm0 riscv64 0.7.0-4.1 [10.0 kB] Get:82 http://ftpmaster.internal/ubuntu lunar/main riscv64 libdeflate0 riscv64 1.14-1 [52.8 kB] Get:83 http://ftpmaster.internal/ubuntu lunar/main riscv64 libjbig0 riscv64 2.1-6ubuntu1 [27.8 kB] Get:84 http://ftpmaster.internal/ubuntu lunar/main riscv64 liblerc4 riscv64 4.0.0+ds-2ubuntu2 [172 kB] Get:85 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libwebp7 riscv64 1.2.4-0.1build1 [166 kB] Get:86 http://ftpmaster.internal/ubuntu lunar/main riscv64 libtiff6 riscv64 4.5.0-4ubuntu1 [173 kB] Get:87 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libwebpdemux2 riscv64 1.2.4-0.1build1 [9038 B] Get:88 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libwebpmux3 riscv64 1.2.4-0.1build1 [18.4 kB] Get:89 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 python3-pil riscv64 9.4.0-1.1build1 [414 kB] Get:90 http://ftpmaster.internal/ubuntu lunar/main riscv64 python3-reportlab all 3.6.12-1 [564 kB] Get:91 http://ftpmaster.internal/ubuntu lunar/main riscv64 xml-core all 0.18+nmu1 [21.6 kB] Get:92 http://ftpmaster.internal/ubuntu lunar/universe riscv64 w3c-sgml-lib all 1.3-3 [280 kB] Get:93 http://ftpmaster.internal/ubuntu lunar/universe riscv64 python3-biopython riscv64 1.80+dfsg-4 [1629 kB] Get:94 http://ftpmaster.internal/ubuntu lunar/universe riscv64 ncbi-data all 6.1.20170106+dfsg1-10 [4395 kB] Get:95 http://ftpmaster.internal/ubuntu lunar/universe riscv64 libmbedcrypto7 riscv64 2.28.2-1 [195 kB] Get:96 http://ftpmaster.internal/ubuntu lunar/universe riscv64 libmbedx509-1 riscv64 2.28.2-1 [42.2 kB] Get:97 http://ftpmaster.internal/ubuntu lunar/universe riscv64 libmbedtls14 riscv64 2.28.2-1 [75.4 kB] Get:98 http://ftpmaster.internal/ubuntu lunar/main riscv64 libpcre3 riscv64 2:8.39-15 [176 kB] Get:99 http://ftpmaster.internal/ubuntu lunar/universe riscv64 ncbi-blast+ riscv64 2.12.0+ds-3build1 [12.4 MB] Get:100 http://ftpmaster.internal/ubuntu lunar/universe riscv64 kaptive all 2.0.4-1 [24.3 kB] Get:101 http://ftpmaster.internal/ubuntu lunar/universe riscv64 libcapnp-0.9.2 riscv64 0.9.2-2 [1339 kB] Get:102 http://ftpmaster.internal/ubuntu lunar/universe riscv64 libgslcblas0 riscv64 2.7.1+dfsg-3 [80.0 kB] Get:103 http://ftpmaster.internal/ubuntu lunar/universe riscv64 libgsl27 riscv64 2.7.1+dfsg-3 [996 kB] Get:104 http://ftpmaster.internal/ubuntu lunar/universe riscv64 libmurmurhash2 riscv64 1.5-3 [6418 B] Get:105 http://ftpmaster.internal/ubuntu lunar/universe riscv64 mash riscv64 2.3+dfsg-3build1 [196 kB] Get:106 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 python3-setuptools all 66.1.1-1 [453 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 74.2 MB in 18s (4235 kB/s) Selecting previously unselected package libpython3.11-minimal:riscv64. (Reading database ... 15071 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.1-2_riscv64.deb ... Unpacking libpython3.11-minimal:riscv64 (3.11.1-2) ... Selecting previously unselected package libexpat1:riscv64. Preparing to unpack .../libexpat1_2.5.0-1_riscv64.deb ... Unpacking libexpat1:riscv64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.1-2_riscv64.deb ... Unpacking python3.11-minimal (3.11.1-2) ... Setting up libpython3.11-minimal:riscv64 (3.11.1-2) ... Setting up libexpat1:riscv64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.1-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 15385 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.1-3_riscv64.deb ... Unpacking python3-minimal (3.11.1-3) ... Selecting previously unselected package media-types. 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Setting up libmpdec3:riscv64 (2.5.1-2build2) ... Setting up libopenjp2-7:riscv64 (2.5.0-1build1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libharfbuzz0b:riscv64 (6.0.0+dfsg-3build1) ... Setting up sgml-base (1.31) ... Setting up libwebpmux3:riscv64 (1.2.4-0.1build1) ... Setting up libbsd0:riscv64 (0.11.7-2) ... Setting up mailcap (3.70+nmu1ubuntu1) ... Setting up libelf1:riscv64 (0.188-2.1) ... Setting up libxml2:riscv64 (2.9.14+dfsg-1.1build1) ... Setting up libjpeg8:riscv64 (8c-2ubuntu10) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libdw1:riscv64 (0.188-2.1) ... Setting up libxdmcp6:riscv64 (1:1.1.3-0ubuntu5) ... Setting up liblapack3:riscv64 (3.11.0-2) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/riscv64-linux-gnu/liblapack.so.3 (liblapack.so.3-riscv64-linux-gnu) in auto mode Setting up libxcb1:riscv64 (1.15-1) ... Setting up gettext (0.21-11) ... Setting up mime-support (3.66) ... Setting up libmbedx509-1:riscv64 (2.28.2-1) ... Setting up libmbedtls14:riscv64 (2.28.2-1) ... Setting up libtool (2.4.7-5) ... Setting up libwebpdemux2:riscv64 (1.2.4-0.1build1) ... Setting up libpython3.11-stdlib:riscv64 (3.11.1-2) ... Setting up xfonts-utils (1:7.7+6build2) ... Setting up python3.10-minimal (3.10.9-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libpython3.10-stdlib:riscv64 (3.10.9-1) ... Setting up dh-autoreconf (20) ... Setting up libraqm0:riscv64 (0.7.0-4.1) ... Setting up mash (2.3+dfsg-3build1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-9) ... Setting up libtiff6:riscv64 (4.5.0-4ubuntu1) ... Setting up xml-core (0.18+nmu1) ... Setting up debugedit (1:5.0-5) ... Setting up libpython3-stdlib:riscv64 (3.11.1-3) ... Setting up python3.11 (3.11.1-2) ... Setting up python3.10 (3.10.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.11.1-3) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up man-db (2.11.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up ncbi-blast+ (2.12.0+ds-3build1) ... Setting up python3-pil:riscv64 (9.4.0-1.1build1) ... Setting up python3-reportlab-accel:riscv64 (3.6.12-1) ... Setting up python3-reportlab (3.6.12-1) ... Setting up python3-lib2to3 (3.10.8-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.10.8-1) ... Setting up dh-python (5.20230130) ... Setting up python3-renderpm:riscv64 (3.6.12-1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up debhelper (13.11.4ubuntu3) ... Setting up python3-numpy (1:1.24.1-2) ... Processing triggers for libc-bin (2.37-0ubuntu1) ... Processing triggers for systemd (252.4-1ubuntu1) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4) ... Setting up kaptive (2.0.4-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 (riscv64) Toolchain package versions: binutils_2.40-2ubuntu1 dpkg-dev_1.21.19ubuntu3 g++-12_12.2.0-14ubuntu1 gcc-12_12.2.0-14ubuntu1 libc6-dev_2.37-0ubuntu1 libstdc++-12-dev_12.2.0-14ubuntu1 libstdc++6_12.2.0-14ubuntu1 linux-libc-dev_6.1.0-14.14 Package versions: adduser_3.129ubuntu1 advancecomp_2.5-1 apt_2.5.5 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-11 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2.15-2ubuntu1 binutils_2.40-2ubuntu1 binutils-common_2.40-2ubuntu1 binutils-riscv64-linux-gnu_2.40-2ubuntu1 bsdextrautils_2.38.1-4ubuntu1 bsdutils_1:2.38.1-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016ubuntu1 coreutils_9.1-1ubuntu2 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-14ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1 debconf_1.5.82 debhelper_13.11.4ubuntu3 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-python_5.20230130 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.19ubuntu3 dpkg-dev_1.21.19ubuntu3 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1ubuntu1 fakeroot_1.30.1-1.1ubuntu1 file_1:5.44-3 findutils_4.9.0-3ubuntu1 fonts-urw-base35_20200910-7 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-14ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-14ubuntu1 gcc-12-base_12.2.0-14ubuntu1 gettext_0.21-11 gettext-base_0.21-11 gpg_2.2.40-1ubuntu2 gpg-agent_2.2.40-1ubuntu2 gpgconf_2.2.40-1ubuntu2 gpgv_2.2.40-1ubuntu2 grep_3.8-5 groff-base_1.22.4-9 gzip_1.12-1ubuntu1 hostname_3.23ubuntu2 init_1.65.2 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 kaptive_2.0.4-1 libacl1_2.3.1-3 libapparmor1_3.0.8-1ubuntu1 libapt-pkg6.0_2.5.5 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan8_12.2.0-14ubuntu1 libassuan0_2.5.5-5 libatomic1_12.2.0-14ubuntu1 libattr1_1:2.5.1-4 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.40-2ubuntu1 libblas3_3.11.0-2 libblkid1_2.38.1-4ubuntu1 libbrotli1_1.0.9-2build7 libbsd0_0.11.7-2 libbz2-1.0_1.0.8-5build1 libc-bin_2.37-0ubuntu1 libc-dev-bin_2.37-0ubuntu1 libc6_2.37-0ubuntu1 libc6-dev_2.37-0ubuntu1 libcap-ng0_0.8.3-1build1 libcap2_1:2.66-3ubuntu1 libcapnp-0.9.2_0.9.2-2 libcc1-0_12.2.0-14ubuntu1 libcom-err2_1.46.6~rc1-1ubuntu1 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libcryptsetup12_2:2.5.0-6ubuntu3 libctf-nobfd0_2.40-2ubuntu1 libctf0_2.40-2ubuntu1 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.264ubuntu1 libdebhelper-perl_13.11.4ubuntu3 libdeflate0_1.14-1 libdevmapper1.02.1_2:1.02.185-1ubuntu1 libdpkg-perl_1.21.19ubuntu3 libdw1_0.188-2.1 libelf1_0.188-2.1 libexpat1_2.5.0-1 libext2fs2_1.46.6~rc1-1ubuntu1 libfakeroot_1.30.1-1.1ubuntu1 libfdisk1_2.38.1-4ubuntu1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libfontenc1_1:1.1.4-1build3 libfreetype6_2.12.1+dfsg-4 libfribidi0_1.0.8-2.1ubuntu1 libgcc-12-dev_12.2.0-14ubuntu1 libgcc-s1_12.2.0-14ubuntu1 libgcrypt20_1.10.1-3ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-14ubuntu1 libglib2.0-0_2.74.5-1 libgmp10_2:6.2.1+dfsg1-1.1ubuntu1 libgnutls30_3.7.8-4ubuntu1 libgomp1_12.2.0-14ubuntu1 libgpg-error0_1.46-1 libgraphite2-3_1.3.14-1build2 libgsl27_2.7.1+dfsg-3 libgslcblas0_2.7.1+dfsg-3 libgssapi-krb5-2_1.20.1-1build1 libharfbuzz0b_6.0.0+dfsg-3build1 libhogweed6_3.8.1-2 libicu72_72.1-3ubuntu1 libidn2-0_2.3.3-1build1 libimagequant0_2.17.0-1 libip4tc2_1.8.7-1ubuntu7 libisl23_0.25-1 libjansson4_2.14-2 libjbig0_2.1-6ubuntu1 libjpeg-turbo8_2.1.2-0ubuntu1 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libprocps8_2:3.3.17-7ubuntu1 libpython3-stdlib_3.11.1-3 libpython3.10-minimal_3.10.9-1 libpython3.10-stdlib_3.10.9-1 libpython3.11-minimal_3.11.1-2 libpython3.11-stdlib_3.11.1-2 libraqm0_0.7.0-4.1 libreadline8_8.2-1.3 libseccomp2_2.5.4-1ubuntu2 libselinux1_3.4-1build3 libsemanage-common_3.4-1build3 libsemanage2_3.4-1build3 libsepol2_3.4-2 libsmartcols1_2.38.1-4ubuntu1 libsqlite3-0_3.40.1-1 libss2_1.46.6~rc1-1ubuntu1 libssl3_3.0.7-1ubuntu1 libstdc++-12-dev_12.2.0-14ubuntu1 libstdc++6_12.2.0-14ubuntu1 libsub-override-perl_0.09-4 libsystemd-shared_252.4-1ubuntu1 libsystemd0_252.4-1ubuntu1 libtasn1-6_4.19.0-2 libtiff6_4.5.0-4ubuntu1 libtinfo6_6.4-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libuchardet0_0.0.7-1build2 libudev1_252.4-1ubuntu1 libunistring2_1.0-2 libuuid1_2.38.1-4ubuntu1 libwebp7_1.2.4-0.1build1 libwebpdemux2_1.2.4-0.1build1 libwebpmux3_1.2.4-0.1build1 libxau6_1:1.0.9-1build5 libxcb1_1.15-1 libxdmcp6_1:1.1.3-0ubuntu5 libxml2_2.9.14+dfsg-1.1build1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg2-3 linux-libc-dev_6.1.0-14.14 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.46.6~rc1-1ubuntu1 lsb-base_11.6 lto-disabled-list_37 m4_1.4.19-3 mailcap_3.70+nmu1ubuntu1 make_4.3-4.1build1 man-db_2.11.2-1 mash_2.3+dfsg-3build1 mawk_1.3.4.20200120-3.1 media-types_9.0.0 mime-support_3.66 mount_2.38.1-4ubuntu1 ncbi-blast+_2.12.0+ds-3build1 ncbi-data_6.1.20170106+dfsg1-10 ncurses-base_6.4-2 ncurses-bin_6.4-2 openssl_3.0.7-1ubuntu1 optipng_0.7.7-2build1 passwd_1:4.13+dfsg1-1ubuntu1 patch_2.7.6-7build2 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 pinentry-curses_1.2.1-1ubuntu1 pkgbinarymangler_151 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-7ubuntu1 python3_3.11.1-3 python3-biopython_1.80+dfsg-4 python3-distutils_3.10.8-1 python3-lib2to3_3.10.8-1 python3-minimal_3.11.1-3 python3-numpy_1:1.24.1-2 python3-pil_9.4.0-1.1build1 python3-pkg-resources_66.1.1-1 python3-renderpm_3.6.12-1 python3-reportlab_3.6.12-1 python3-reportlab-accel_3.6.12-1 python3-setuptools_66.1.1-1 python3.10_3.10.9-1 python3.10-minimal_3.10.9-1 python3.11_3.11.1-2 python3.11-minimal_3.11.1-2 readline-common_8.2-1.3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.17+nmu1 sgml-base_1.31 systemd_252.4-1ubuntu1 systemd-sysv_252.4-1ubuntu1 sysvinit-utils_3.05-7ubuntu2 tar_1.34+dfsg-1.1 tzdata_2022g-2ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_33ubuntu1 util-linux_2.38.1-4ubuntu1 util-linux-extra_2.38.1-4ubuntu1 w3c-sgml-lib_1.3-3 x11-common_1:7.7+23ubuntu2 xfonts-encodings_1:1.0.5-0ubuntu2 xfonts-utils_1:7.7+6build2 xml-core_0.18+nmu1 xz-utils_5.4.1-0.1 zlib1g_1:1.2.13.dfsg-1ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: kleborate Binary: kleborate, kleborate-examples Architecture: any all Version: 2.3.1-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/katholt/Kleborate Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/kleborate Vcs-Git: https://salsa.debian.org/med-team/kleborate.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, ncbi-blast+ , mash , kaptive Package-List: kleborate deb science optional arch=any kleborate-examples deb science optional arch=all Checksums-Sha1: c17b29c844df2a03880d376d0ef2aca16715af57 91335255 kleborate_2.3.1.orig.tar.gz 77ee901ea3fa69bd41b0ec0bb0bb707bde524881 5996008 kleborate_2.3.1-1.debian.tar.xz Checksums-Sha256: 81bd01f9c7db7ca1d6763571eddea616e4970d2420dab6dfa8a9b47aebb8a870 91335255 kleborate_2.3.1.orig.tar.gz 3f530ce060ffe9d8f5fa160c10a6bf274b3bc64697a28f6424b5d5548ec51d4f 5996008 kleborate_2.3.1-1.debian.tar.xz Files: 6d39609923dd9932e0221108fb103481 91335255 kleborate_2.3.1.orig.tar.gz 1c1d0d8466ed1b01b66c96ad03e338c2 5996008 kleborate_2.3.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPgpd8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHK/xAAgYmuVcJaRQGR3UeEZPYo8sb2uaJYzvTo jevvMrpvuBWXd13l/9iF3XKtAW+XxvnRl4/+1FKMAxdy1waRVEyKSiTqA23d6rwZ dnTpxtBd2vRkbYqQkrDex63sGQTUJlz4iKXWqrGWUYSASLaHERCBtqdLMQuZnBj6 oO8M5FbszDDFDWPy7AtMaEBHwhlsqhr/PiBBEax3TFsqc4u7lZuMfJ8u7PPelAi2 4cf6foozLZFplsv6ltgXiZdu8tPv60kDAV/h+KO09wZtjrB2uPxpNT3YgLxyHcoz 5gBXrbnReoP8gCiqPuTFEQ1tmU4k72yWB0ZKkkjHdRNvu9zb7KfpUuj1EhOMD8SN ENImpyiXym92xIeAkG93MWmeP9zdZI2kNr4/EC9LFJiGzvhlctpvcfchqlRfg+ZC GP2AZC1hdlZ4H5NTwsGymgYvqBNvJja3HjNGfYbljAYOm29g9JWupbLKfeIuCJoA NcvM7pFR5sdHyTICnZmEIXBMhRIPok3iis1lr1jcUj5/BvZLgNdvZmQsYbJ7jO2p K84ju8YcLeTwpKaYIx/Tjgq9N4JGsbjjlqVwX8PvqIhzrUE/ny+zrcOOYWHo5XUX 0ntZBjCty8gqHz4Cr2xDLtt+pSlbNtUG/B3JnMDtwq8YaVgSQKGRYQdFcMjCajtS Q4+q/9dpbjA= =S2nT -----END PGP SIGNATURE----- gpgv: Signature made Mon Feb 6 07:01:51 2023 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./kleborate_2.3.1-1.dsc: no acceptable signature found dpkg-source: info: extracting kleborate in /<> dpkg-source: info: unpacking kleborate_2.3.1.orig.tar.gz dpkg-source: info: unpacking kleborate_2.3.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3.patch dpkg-source: info: applying use_debian_installed_kaptive.patch dpkg-source: info: applying bigendian.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-25560813 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-25560813 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-25560813 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package kleborate dpkg-buildpackage: info: source version 2.3.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-riscv64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/version.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/__init__.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/contig_stats.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/help_formatter.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/misc.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/shv_mutations.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/species.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/truncation.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/resBLAST.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/mlstBLAST.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/__main__.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/blastn.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/rmpA.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/kaptive.py -> /<>/.pybuild/cpython3_3.11/build/kleborate running egg_info creating Kleborate.egg-info writing Kleborate.egg-info/PKG-INFO writing dependency_links to Kleborate.egg-info/dependency_links.txt writing entry points to Kleborate.egg-info/entry_points.txt writing requirements to Kleborate.egg-info/requires.txt writing top-level names to Kleborate.egg-info/top_level.txt writing manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'kleborate/ICEKp_references' warning: no directories found matching 'kaptive/reference_database' warning: no directories found matching 'kaptive/sample_data' adding license file 'LICENSE' writing manifest file 'Kleborate.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'kleborate.data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'kleborate.data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'kleborate.data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'kleborate.data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'kleborate.data.ICEKp_references' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'kleborate.data.ICEKp_references' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'kleborate.data.ICEKp_references' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'kleborate.data.ICEKp_references' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) creating /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/AbST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/CARD_AMR_clustered.csv -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/CARD_v3.1.13.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/CbST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/Klebsiella_pneumoniae.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/MgrB_and_PmrB.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/OmpK.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/QRDR_120.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/RmST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/SmST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/YbST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/clb_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/iro_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/iuc_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/kpneumoniae.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/rmpA2.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/rmp_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/species_mash_sketches.msh -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/wzi.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/wzi.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/ybt_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data creating /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp1.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp10.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp11.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp12.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp13.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp14.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp15.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp16.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp17.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp18.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp19.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp2.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp20.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp21.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp22.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp3.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp4.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp5.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp6.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp7.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp8.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp9.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references dh: command-omitted: The call to "dh_auto_test -a -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /<>/debian/tmp running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing Kleborate.egg-info/PKG-INFO writing dependency_links to Kleborate.egg-info/dependency_links.txt writing entry points to Kleborate.egg-info/entry_points.txt writing requirements to Kleborate.egg-info/requires.txt writing top-level names to Kleborate.egg-info/top_level.txt reading manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'kleborate/ICEKp_references' warning: no directories found matching 'kaptive/reference_database' warning: no directories found matching 'kaptive/sample_data' adding license file 'LICENSE' writing manifest file 'Kleborate.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'kleborate.data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'kleborate.data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'kleborate.data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'kleborate.data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'kleborate.data.ICEKp_references' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'kleborate.data.ICEKp_references' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'kleborate.data.ICEKp_references' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'kleborate.data.ICEKp_references' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running install_lib creating /<>/debian/tmp/usr creating /<>/debian/tmp/usr/lib creating /<>/debian/tmp/usr/lib/python3.11 creating /<>/debian/tmp/usr/lib/python3.11/dist-packages creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/version.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/contig_stats.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/help_formatter.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/misc.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/shv_mutations.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/MgrB_and_PmrB.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/wzi.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/iro_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp7.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp21.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp8.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp3.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp15.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp6.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp18.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp10.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp11.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp2.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp13.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp14.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp1.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp12.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp19.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp22.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp5.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp17.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp20.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp4.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp16.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp9.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/CARD_AMR_clustered.csv -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ybt_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/kpneumoniae.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/CARD_v3.1.13.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/iuc_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/Klebsiella_pneumoniae.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/AbST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/clb_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/species_mash_sketches.msh -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/QRDR_120.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/RmST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/OmpK.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/rmp_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/CbST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/YbST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/SmST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/rmpA2.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/wzi.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/species.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/truncation.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/resBLAST.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/mlstBLAST.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/__main__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/blastn.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/rmpA.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/kaptive.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/version.py to version.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/contig_stats.py to contig_stats.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/help_formatter.py to help_formatter.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/misc.py to misc.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/shv_mutations.py to shv_mutations.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/species.py to species.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/truncation.py to truncation.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/resBLAST.py to resBLAST.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/mlstBLAST.py to mlstBLAST.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__main__.py to __main__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/blastn.py to blastn.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/rmpA.py to rmpA.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/kaptive.py to kaptive.cpython-311.pyc running install_egg_info Copying Kleborate.egg-info to /<>/debian/tmp/usr/lib/python3.11/dist-packages/Kleborate-2.2.0.egg-info Skipping SOURCES.txt running install_scripts Installing kleborate script to /<>/debian/tmp/usr/bin Building BLAST databases with makeblastdb: makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/CARD_v3.1.13.fasta makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/clb_alleles.fasta makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/rmpA2.fasta makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/iro_alleles.fasta makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/iuc_alleles.fasta makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/rmp_alleles.fasta makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/wzi.fasta makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ybt_alleles.fasta makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/MgrB_and_PmrB.fasta makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/OmpK.fasta makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/QRDR_120.fasta  _ __ _ ______ ____ ____ _____ _______ ______ | | / /| | | ____| _ \ / __ \| __ \ /\|__ __| ____| | |/ / | | | |__ | |_) | | | | |__) | / \ | | | |__ | < | | | __| | _ <| | | | _ / / /\ \ | | | __| | |\ \ | |___| |____| |_) | |__| | | \ \/ ____ \| | | |____ |_| \_\|_____|______|____/ \____/|_| \_\/ \_\_| |______|  Kleborate is installed and ready to use! Example commands: kleborate --help kleborate -o results.txt -a *.fasta kleborate --resistance -o results.txt -a *.fasta kleborate --all -o results.txt -a *.fasta debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install # fasta.nin files will be (re)build at package installation time to not contain build path find debian -name "*.fasta.nin" -delete make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -name "*.msh" -exec chmod -x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 151 pkgstriptranslations: processing kleborate (in debian/kleborate); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/kleborate/DEBIAN/control, package kleborate, directory debian/kleborate pkgstripfiles: Truncating usr/share/doc/kleborate/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 8 cpus) for package kleborate ... pkgstripfiles: No PNG files. dpkg-deb: building package 'kleborate' in '../kleborate_2.3.1-1_riscv64.deb'. dpkg-genbuildinfo --build=any -O../kleborate_2.3.1-1_riscv64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../kleborate_2.3.1-1_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-02-06T18:06:41Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kleborate_2.3.1-1_riscv64.changes: ---------------------------------- Format: 1.8 Date: Mon, 06 Feb 2023 07:37:51 +0100 Source: kleborate Binary: kleborate Built-For-Profiles: noudeb Architecture: riscv64 Version: 2.3.1-1 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: kleborate - tool to screen Klebsiella genome assemblies Changes: kleborate (2.3.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 9b8653cb4bac7be8ee345795a79636510943cd85 7588 kleborate_2.3.1-1_riscv64.buildinfo 1a46ffe93da36e7c8a155839b998114d11697acc 8745624 kleborate_2.3.1-1_riscv64.deb Checksums-Sha256: ff9a625010b1915d8e76829f2790d2b7694c282e6856f27b2819b6d9f869b287 7588 kleborate_2.3.1-1_riscv64.buildinfo 45b2acbca996d0a1a44a4c1c4650ddf569e54d52c9bd353c250c25f14546a7d5 8745624 kleborate_2.3.1-1_riscv64.deb Files: 354822ae207b8b764b24480aa3776b01 7588 science optional kleborate_2.3.1-1_riscv64.buildinfo b1d3aef9d019c038bafd34efefdcd54b 8745624 science optional kleborate_2.3.1-1_riscv64.deb /<>/kleborate_2.3.1-1_riscv64.changes.new could not be renamed to /<>/kleborate_2.3.1-1_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: kleborate Binary: kleborate Architecture: riscv64 Version: 2.3.1-1 Checksums-Md5: b1d3aef9d019c038bafd34efefdcd54b 8745624 kleborate_2.3.1-1_riscv64.deb Checksums-Sha1: 1a46ffe93da36e7c8a155839b998114d11697acc 8745624 kleborate_2.3.1-1_riscv64.deb Checksums-Sha256: 45b2acbca996d0a1a44a4c1c4650ddf569e54d52c9bd353c250c25f14546a7d5 8745624 kleborate_2.3.1-1_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Mon, 06 Feb 2023 18:06:34 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-11), autotools-dev (= 20220109.1), base-files (= 12.3ubuntu1), base-passwd (= 3.6.1), bash (= 5.2.15-2ubuntu1), binutils (= 2.40-2ubuntu1), binutils-common (= 2.40-2ubuntu1), binutils-riscv64-linux-gnu (= 2.40-2ubuntu1), bsdextrautils (= 2.38.1-4ubuntu1), bsdutils (= 1:2.38.1-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 9.1-1ubuntu2), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-14ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-9ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.4ubuntu3), debianutils (= 5.7-0.4), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-python (= 5.20230130), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.19ubuntu3), dpkg-dev (= 1.21.19ubuntu3), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-3ubuntu1), fonts-urw-base35 (= 20200910-7), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-14ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-14ubuntu1), gcc-12-base (= 12.2.0-14ubuntu1), gettext (= 0.21-11), gettext-base (= 0.21-11), grep (= 3.8-5), groff-base (= 1.22.4-9), gzip (= 1.12-1ubuntu1), hostname (= 3.23ubuntu2), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), kaptive (= 2.0.4-1), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 12.2.0-14ubuntu1), libatomic1 (= 12.2.0-14ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.0.7-1.1), libaudit1 (= 1:3.0.7-1.1), libbinutils (= 2.40-2ubuntu1), libblas3 (= 3.11.0-2), libblkid1 (= 2.38.1-4ubuntu1), libbrotli1 (= 1.0.9-2build7), libbsd0 (= 0.11.7-2), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.37-0ubuntu1), libc-dev-bin (= 2.37-0ubuntu1), libc6 (= 2.37-0ubuntu1), libc6-dev (= 2.37-0ubuntu1), libcap-ng0 (= 0.8.3-1build1), libcap2 (= 1:2.66-3ubuntu1), libcapnp-0.9.2 (= 0.9.2-2), libcc1-0 (= 12.2.0-14ubuntu1), libcom-err2 (= 1.46.6~rc1-1ubuntu1), libcrypt-dev (= 1:4.4.33-2), libcrypt1 (= 1:4.4.33-2), libctf-nobfd0 (= 2.40-2ubuntu1), libctf0 (= 2.40-2ubuntu1), libdb5.3 (= 5.3.28+dfsg2-1), libdebconfclient0 (= 0.264ubuntu1), libdebhelper-perl (= 13.11.4ubuntu3), libdeflate0 (= 1.14-1), libdpkg-perl (= 1.21.19ubuntu3), libdw1 (= 0.188-2.1), libelf1 (= 0.188-2.1), libexpat1 (= 2.5.0-1), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libfontenc1 (= 1:1.1.4-1build3), libfreetype6 (= 2.12.1+dfsg-4), libfribidi0 (= 1.0.8-2.1ubuntu1), libgcc-12-dev (= 12.2.0-14ubuntu1), libgcc-s1 (= 12.2.0-14ubuntu1), libgcrypt20 (= 1.10.1-3ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgfortran5 (= 12.2.0-14ubuntu1), libglib2.0-0 (= 2.74.5-1), libgmp10 (= 2:6.2.1+dfsg1-1.1ubuntu1), libgomp1 (= 12.2.0-14ubuntu1), libgpg-error0 (= 1.46-1), libgraphite2-3 (= 1.3.14-1build2), libgsl27 (= 2.7.1+dfsg-3), libgslcblas0 (= 2.7.1+dfsg-3), libgssapi-krb5-2 (= 1.20.1-1build1), libharfbuzz0b (= 6.0.0+dfsg-3build1), libicu72 (= 72.1-3ubuntu1), libimagequant0 (= 2.17.0-1), libisl23 (= 0.25-1), libjansson4 (= 2.14-2), libjbig0 (= 2.1-6ubuntu1), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libk5crypto3 (= 1.20.1-1build1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-1build1), libkrb5support0 (= 1.20.1-1build1), liblapack3 (= 3.11.0-2), liblcms2-2 (= 2.14-1build1), liblerc4 (= 4.0.0+ds-2ubuntu2), liblmdb0 (= 0.9.24-1build2), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.1-0.1), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmbedcrypto7 (= 2.28.2-1), libmbedtls14 (= 2.28.2-1), libmbedx509-1 (= 2.28.2-1), libmd0 (= 1.0.4-2), libmount1 (= 2.38.1-4ubuntu1), libmpc3 (= 1.3.1-1), libmpdec3 (= 2.5.1-2build2), libmpfr6 (= 4.2.0-1), libmurmurhash2 (= 1.5-3), libncursesw6 (= 6.4-2), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libopenjp2-7 (= 2.5.0-1build1), libpam-modules (= 1.5.2-5ubuntu1), libpam-modules-bin (= 1.5.2-5ubuntu1), libpam-runtime (= 1.5.2-5ubuntu1), libpam0g (= 1.5.2-5ubuntu1), libpcre2-8-0 (= 10.42-1), libpcre3 (= 2:8.39-15), libperl5.36 (= 5.36.0-7), libpipeline1 (= 1.5.7-1), libpng16-16 (= 1.6.39-2), libpython3-stdlib (= 3.11.1-3), libpython3.10-minimal (= 3.10.9-1), libpython3.10-stdlib (= 3.10.9-1), libpython3.11-minimal (= 3.11.1-2), libpython3.11-stdlib (= 3.11.1-2), libraqm0 (= 0.7.0-4.1), libreadline8 (= 8.2-1.3), libselinux1 (= 3.4-1build3), libsmartcols1 (= 2.38.1-4ubuntu1), libsqlite3-0 (= 3.40.1-1), libssl3 (= 3.0.7-1ubuntu1), libstdc++-12-dev (= 12.2.0-14ubuntu1), libstdc++6 (= 12.2.0-14ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 252.4-1ubuntu1), libtiff6 (= 4.5.0-4ubuntu1), libtinfo6 (= 6.4-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-5), libuchardet0 (= 0.0.7-1build2), libudev1 (= 252.4-1ubuntu1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-4ubuntu1), libwebp7 (= 1.2.4-0.1build1), libwebpdemux2 (= 1.2.4-0.1build1), libwebpmux3 (= 1.2.4-0.1build1), libxau6 (= 1:1.0.9-1build5), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxml2 (= 2.9.14+dfsg-1.1build1), libzstd1 (= 1.5.2+dfsg2-3), linux-libc-dev (= 6.1.0-14.14), login (= 1:4.13+dfsg1-1ubuntu1), lsb-base (= 11.6), lto-disabled-list (= 37), m4 (= 1.4.19-3), mailcap (= 3.70+nmu1ubuntu1), make (= 4.3-4.1build1), man-db (= 2.11.2-1), mash (= 2.3+dfsg-3build1), mawk (= 1.3.4.20200120-3.1), media-types (= 9.0.0), mime-support (= 3.66), ncbi-blast+ (= 2.12.0+ds-3build1), ncbi-data (= 6.1.20170106+dfsg1-10), ncurses-base (= 6.4-2), ncurses-bin (= 6.4-2), patch (= 2.7.6-7build2), perl (= 5.36.0-7), perl-base (= 5.36.0-7), perl-modules-5.36 (= 5.36.0-7), po-debconf (= 1.0.21+nmu1), python3 (= 3.11.1-3), python3-biopython (= 1.80+dfsg-4), python3-distutils (= 3.10.8-1), python3-lib2to3 (= 3.10.8-1), python3-minimal (= 3.11.1-3), python3-numpy (= 1:1.24.1-2), python3-pil (= 9.4.0-1.1build1), python3-pkg-resources (= 66.1.1-1), python3-renderpm (= 3.6.12-1), python3-reportlab (= 3.6.12-1), python3-reportlab-accel (= 3.6.12-1), python3-setuptools (= 66.1.1-1), python3.10 (= 3.10.9-1), python3.10-minimal (= 3.10.9-1), python3.11 (= 3.11.1-2), python3.11-minimal (= 3.11.1-2), readline-common (= 8.2-1.3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.17+nmu1), sgml-base (= 1.31), sysvinit-utils (= 3.05-7ubuntu2), tar (= 1.34+dfsg-1.1), usrmerge (= 33ubuntu1), util-linux (= 2.38.1-4ubuntu1), util-linux-extra (= 2.38.1-4ubuntu1), w3c-sgml-lib (= 1.3-3), x11-common (= 1:7.7+23ubuntu2), xfonts-encodings (= 1:1.0.5-0ubuntu2), xfonts-utils (= 1:7.7+6build2), xml-core (= 0.18+nmu1), xz-utils (= 5.4.1-0.1), zlib1g (= 1:1.2.13.dfsg-1ubuntu4) Environment: DEB_BUILD_OPTIONS="nocheck parallel=8" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1675665471" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kleborate_2.3.1-1_riscv64.deb ----------------------------- new Debian package, version 2.0. size 8745624 bytes: control archive=4592 bytes. 1037 bytes, 23 lines control 13848 bytes, 141 lines md5sums 721 bytes, 36 lines * postinst #!/bin/sh 642 bytes, 32 lines * prerm #!/bin/sh Package: kleborate Version: 2.3.1-1 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 62570 Depends: python3-biopython, python3:any, ncbi-blast+, mash, kaptive, kaptive-data, python3-distutils Section: science Priority: optional Homepage: https://github.com/katholt/Kleborate Description: tool to screen Klebsiella genome assemblies Kleborate is a tool to screen Klebsiella genome assemblies for: . * MLST sequence type * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.) * ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb) * virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2) * antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive drwxr-xr-x root/root 0 2023-02-06 06:37 ./ drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/ drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/bin/ -rwxr-xr-x root/root 968 2023-02-06 06:37 ./usr/bin/kleborate drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/lib/ drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/lib/python3/ drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/ -rw-r--r-- root/root 3043 2023-02-06 06:37 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2023-02-06 06:37 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/dependency_links.txt -rw-r--r-- root/root 54 2023-02-06 06:37 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/entry_points.txt -rw-r--r-- root/root 1 2023-02-06 06:37 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/not-zip-safe -rw-r--r-- root/root 0 2023-02-06 06:37 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/requires.txt -rw-r--r-- root/root 18 2023-02-06 06:37 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/top_level.txt drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/ -rw-r--r-- root/root 0 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/__init__.py -rw-r--r-- root/root 27543 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/__main__.py -rw-r--r-- root/root 5846 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/blastn.py -rw-r--r-- root/root 2916 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/contig_stats.py drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/ -rw-r--r-- root/root 2034 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/AbST_profiles.txt -rw-r--r-- root/root 246517 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/CARD_AMR_clustered.csv -rw-r--r-- root/root 2503292 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta -rw-r--r-- root/root 20480 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta.ndb -rw-r--r-- root/root 245794 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta.nhr -rw-r--r-- root/root 32324 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta.not -rw-r--r-- root/root 607403 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta.nsq -rw-r--r-- root/root 16384 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta.ntf -rw-r--r-- root/root 10776 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta.nto -rw-r--r-- root/root 3178 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/CbST_profiles.txt drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ -rw-r--r-- root/root 159849 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp1.embl -rw-r--r-- root/root 288072 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp10.embl 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+------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 366300 Build-Time: 436 Distribution: lunar-proposed Host Architecture: riscv64 Install-Time: 1243 Job: kleborate_2.3.1-1.dsc Machine Architecture: riscv64 Package: kleborate Package-Time: 1734 Source-Version: 2.3.1-1 Space: 366300 Status: successful Version: 2.3.1-1 -------------------------------------------------------------------------------- Finished at 2023-02-06T18:06:41Z Build needed 00:28:54, 366300k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25560813 Scanning for processes to kill in build PACKAGEBUILD-25560813 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25560813 Stopping target for build PACKAGEBUILD-25560813 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25560813 Removing build PACKAGEBUILD-25560813