https://launchpad.net/ubuntu/+source/kleborate/2.3.1-1/+build/25560814 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-001 5.4.0-137-generic #154-Ubuntu SMP Thu Jan 5 17:03:11 UTC 2023 s390x Buildd toolchain package versions: launchpad-buildd_229~619~ubuntu20.04.1 python3-lpbuildd_229~619~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.8 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 6 Feb 17:41:58 ntpdate[1851]: adjust time server 10.211.37.1 offset 0.000109 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-25560814 --image-type chroot /home/buildd/filecache-default/22b7ec405c1fe881d1e0795ebcfd3bff662be15c Creating target for build PACKAGEBUILD-25560814 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-25560814 Starting target for build PACKAGEBUILD-25560814 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-25560814 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-25560814 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-25560814 Updating target for build PACKAGEBUILD-25560814 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main s390x Packages [1314 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe s390x Packages [14.2 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5913 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x Packages [136 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [63.4 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe s390x Packages [544 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [240 kB] Fetched 23.5 MB in 11s (2085 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: adduser advancecomp apt bash binutils binutils-common binutils-s390x-linux-gnu coreutils cpp-12 debconf diffutils dpkg dpkg-dev fakeroot g++-12 gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv grep libacl1 libapt-pkg6.0 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libfakeroot libgcc-12-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libitm1 liblzma5 libmpfr6 libncurses6 libncursesw6 libp11-kit0 libpcre2-8-0 libperl5.36 libreadline8 libselinux1 libsemanage-common libsemanage2 libsqlite3-0 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libubsan1 libudev1 libzstd1 linux-libc-dev lsb-base ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.36 pkgbinarymangler readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tzdata xz-utils zlib1g 88 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 82.5 MB of archives. After this operation, 3954 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar/main s390x bash s390x 5.2.15-2ubuntu1 [786 kB] Get:2 http://ftpmaster.internal/ubuntu lunar/main s390x coreutils s390x 9.1-1ubuntu2 [1390 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x diffutils s390x 1:3.8-4 [177 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libc-bin s390x 2.37-0ubuntu1 [599 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main s390x libcrypt-dev s390x 1:4.4.33-2 [114 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libc6-dev s390x 2.37-0ubuntu1 [1510 kB] Get:7 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libc-dev-bin s390x 2.37-0ubuntu1 [19.6 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main s390x libcrypt1 s390x 1:4.4.33-2 [82.2 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x linux-libc-dev s390x 6.1.0-14.14 [1464 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main s390x libcc1-0 s390x 12.2.0-14ubuntu1 [45.5 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main s390x libctf0 s390x 2.40-2ubuntu1 [94.2 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main s390x libctf-nobfd0 s390x 2.40-2ubuntu1 [95.0 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main s390x binutils-s390x-linux-gnu s390x 2.40-2ubuntu1 [2061 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main s390x libbinutils s390x 2.40-2ubuntu1 [463 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main s390x binutils-common s390x 2.40-2ubuntu1 [226 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main s390x binutils s390x 2.40-2ubuntu1 [3060 B] Get:17 http://ftpmaster.internal/ubuntu lunar/main s390x gcc-12-base s390x 12.2.0-14ubuntu1 [19.3 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main s390x libgcc-s1 s390x 12.2.0-14ubuntu1 [28.4 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main s390x libgomp1 s390x 12.2.0-14ubuntu1 [122 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main s390x libitm1 s390x 12.2.0-14ubuntu1 [29.5 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main s390x libatomic1 s390x 12.2.0-14ubuntu1 [8942 B] Get:22 http://ftpmaster.internal/ubuntu lunar/main s390x libasan8 s390x 12.2.0-14ubuntu1 [2409 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main s390x libubsan1 s390x 12.2.0-14ubuntu1 [958 kB] Get:24 http://ftpmaster.internal/ubuntu lunar/main s390x g++-12 s390x 12.2.0-14ubuntu1 [9436 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main s390x libstdc++-12-dev s390x 12.2.0-14ubuntu1 [2192 kB] Get:26 http://ftpmaster.internal/ubuntu lunar/main s390x libgcc-12-dev s390x 12.2.0-14ubuntu1 [853 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main s390x gcc-12 s390x 12.2.0-14ubuntu1 [16.2 MB] Get:28 http://ftpmaster.internal/ubuntu lunar/main s390x cpp-12 s390x 12.2.0-14ubuntu1 [8165 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main s390x libstdc++6 s390x 12.2.0-14ubuntu1 [728 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main s390x zlib1g s390x 1:1.2.13.dfsg-1ubuntu4 [65.6 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main s390x libmpfr6 s390x 4.2.0-1 [278 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main s390x libzstd1 s390x 1.5.2+dfsg2-3 [261 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libc6 s390x 2.37-0ubuntu1 [2668 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x liblzma5 s390x 5.4.1-0.1 [124 kB] Get:35 http://ftpmaster.internal/ubuntu lunar/main s390x libgcrypt20 s390x 1.10.1-3ubuntu1 [466 kB] Get:36 http://ftpmaster.internal/ubuntu lunar/main s390x libacl1 s390x 2.3.1-3 [16.5 kB] Get:37 http://ftpmaster.internal/ubuntu lunar/main s390x libaudit-common all 1:3.0.7-1.1 [5108 B] Get:38 http://ftpmaster.internal/ubuntu lunar/main s390x libaudit1 s390x 1:3.0.7-1.1 [45.5 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libcap2 s390x 1:2.66-3ubuntu1 [28.3 kB] Get:40 http://ftpmaster.internal/ubuntu lunar/main s390x libpcre2-8-0 s390x 10.42-1 [210 kB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libselinux1 s390x 3.4-1build3 [76.8 kB] Get:42 http://ftpmaster.internal/ubuntu lunar/main s390x libperl5.36 s390x 5.36.0-7 [4716 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main s390x perl s390x 5.36.0-7 [235 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main s390x perl-base s390x 5.36.0-7 [1713 kB] Get:45 http://ftpmaster.internal/ubuntu lunar/main s390x perl-modules-5.36 all 5.36.0-7 [2984 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main s390x libdb5.3 s390x 5.3.28+dfsg2-1 [707 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/main s390x debconf all 1.5.82 [125 kB] Get:48 http://ftpmaster.internal/ubuntu lunar/main s390x libssl3 s390x 3.0.7-1ubuntu1 [1567 kB] Get:49 http://ftpmaster.internal/ubuntu lunar/main s390x systemd-sysv s390x 252.4-1ubuntu1 [11.4 kB] Get:50 http://ftpmaster.internal/ubuntu lunar/main s390x systemd s390x 252.4-1ubuntu1 [2857 kB] Get:51 http://ftpmaster.internal/ubuntu lunar/main s390x libsystemd-shared s390x 252.4-1ubuntu1 [1668 kB] Get:52 http://ftpmaster.internal/ubuntu lunar/main s390x libp11-kit0 s390x 0.24.1-2ubuntu1 [249 kB] Get:53 http://ftpmaster.internal/ubuntu lunar/main s390x libsystemd0 s390x 252.4-1ubuntu1 [317 kB] Get:54 http://ftpmaster.internal/ubuntu lunar/main s390x libudev1 s390x 252.4-1ubuntu1 [87.6 kB] Get:55 http://ftpmaster.internal/ubuntu lunar/main s390x libapt-pkg6.0 s390x 2.5.5 [867 kB] Get:56 http://ftpmaster.internal/ubuntu lunar/main s390x dpkg s390x 1.21.19ubuntu3 [1325 kB] Get:57 http://ftpmaster.internal/ubuntu lunar/main s390x grep s390x 3.8-5 [160 kB] Get:58 http://ftpmaster.internal/ubuntu lunar/main s390x ncurses-bin s390x 6.4-2 [186 kB] Get:59 http://ftpmaster.internal/ubuntu lunar/main s390x sed s390x 4.9-1 [193 kB] Get:60 http://ftpmaster.internal/ubuntu lunar/main s390x ncurses-base all 6.4-2 [21.3 kB] Get:61 http://ftpmaster.internal/ubuntu lunar/main s390x sysvinit-utils s390x 3.05-7ubuntu2 [27.4 kB] Get:62 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x lsb-base all 11.6 [4606 B] Get:63 http://ftpmaster.internal/ubuntu lunar/main s390x adduser all 3.129ubuntu1 [59.0 kB] Get:64 http://ftpmaster.internal/ubuntu lunar/main s390x gpgv s390x 2.2.40-1ubuntu2 [134 kB] Get:65 http://ftpmaster.internal/ubuntu lunar/main s390x libgnutls30 s390x 3.7.8-4ubuntu1 [892 kB] Get:66 http://ftpmaster.internal/ubuntu lunar/main s390x apt s390x 2.5.5 [1351 kB] Get:67 http://ftpmaster.internal/ubuntu lunar/main s390x libattr1 s390x 1:2.5.1-4 [12.4 kB] Get:68 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libsemanage-common all 3.4-1build3 [9808 B] Get:69 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libsemanage2 s390x 3.4-1build3 [88.5 kB] Get:70 http://ftpmaster.internal/ubuntu lunar/main s390x libncurses6 s390x 6.4-2 [111 kB] Get:71 http://ftpmaster.internal/ubuntu lunar/main s390x libncursesw6 s390x 6.4-2 [143 kB] Get:72 http://ftpmaster.internal/ubuntu lunar/main s390x libtinfo6 s390x 6.4-2 [101 kB] Get:73 http://ftpmaster.internal/ubuntu lunar/main s390x sensible-utils all 0.0.17+nmu1 [19.3 kB] Get:74 http://ftpmaster.internal/ubuntu lunar/main s390x readline-common all 8.2-1.3 [55.7 kB] Get:75 http://ftpmaster.internal/ubuntu lunar/main s390x libreadline8 s390x 8.2-1.3 [151 kB] Get:76 http://ftpmaster.internal/ubuntu lunar/main s390x libsqlite3-0 s390x 3.40.1-1 [642 kB] Get:77 http://ftpmaster.internal/ubuntu lunar/main s390x openssl s390x 3.0.7-1ubuntu1 [1165 kB] Get:78 http://ftpmaster.internal/ubuntu lunar/main s390x tzdata all 2022g-2ubuntu1 [397 kB] Get:79 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x xz-utils s390x 5.4.1-0.1 [267 kB] Get:80 http://ftpmaster.internal/ubuntu lunar/main s390x advancecomp s390x 2.5-1 [174 kB] Get:81 http://ftpmaster.internal/ubuntu lunar/main s390x dpkg-dev all 1.21.19ubuntu3 [1067 kB] Get:82 http://ftpmaster.internal/ubuntu lunar/main s390x libdpkg-perl all 1.21.19ubuntu3 [247 kB] Get:83 http://ftpmaster.internal/ubuntu lunar/main s390x libfakeroot s390x 1.30.1-1.1ubuntu1 [30.0 kB] Get:84 http://ftpmaster.internal/ubuntu lunar/main s390x fakeroot s390x 1.30.1-1.1ubuntu1 [59.7 kB] Get:85 http://ftpmaster.internal/ubuntu lunar/main s390x gpg s390x 2.2.40-1ubuntu2 [508 kB] Get:86 http://ftpmaster.internal/ubuntu lunar/main s390x gpgconf s390x 2.2.40-1ubuntu2 [94.8 kB] Get:87 http://ftpmaster.internal/ubuntu lunar/main s390x gpg-agent s390x 2.2.40-1ubuntu2 [213 kB] Get:88 http://ftpmaster.internal/ubuntu lunar/main s390x pkgbinarymangler all 151 [16.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 82.5 MB in 14s (5911 kB/s) (Reading database ... 12875 files and directories currently installed.) Preparing to unpack .../bash_5.2.15-2ubuntu1_s390x.deb ... Unpacking bash (5.2.15-2ubuntu1) over (5.2-1ubuntu2) ... Setting up bash (5.2.15-2ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12875 files and directories currently installed.) Preparing to unpack .../coreutils_9.1-1ubuntu2_s390x.deb ... Unpacking coreutils (9.1-1ubuntu2) over (8.32-4.1ubuntu1) ... Setting up coreutils (9.1-1ubuntu2) ... (Reading database ... 12875 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.8-4_s390x.deb ... Unpacking diffutils (1:3.8-4) over (1:3.8-1) ... Setting up diffutils (1:3.8-4) ... (Reading database ... 12875 files and directories currently installed.) Preparing to unpack .../libc-bin_2.37-0ubuntu1_s390x.deb ... Unpacking libc-bin (2.37-0ubuntu1) over (2.36-0ubuntu4) ... Setting up libc-bin (2.37-0ubuntu1) ... (Reading database ... 12875 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.33-2_s390x.deb ... Unpacking libcrypt-dev:s390x (1:4.4.33-2) over (1:4.4.33-1) ... Preparing to unpack .../libc6-dev_2.37-0ubuntu1_s390x.deb ... Unpacking libc6-dev:s390x (2.37-0ubuntu1) over (2.36-0ubuntu4) ... Preparing to unpack .../libc-dev-bin_2.37-0ubuntu1_s390x.deb ... Unpacking libc-dev-bin (2.37-0ubuntu1) over (2.36-0ubuntu4) ... Preparing to unpack .../libcrypt1_1%3a4.4.33-2_s390x.deb ... Unpacking libcrypt1:s390x (1:4.4.33-2) over (1:4.4.33-1) ... Setting up libcrypt1:s390x (1:4.4.33-2) ... (Reading database ... 12875 files and directories currently installed.) Preparing to unpack .../0-linux-libc-dev_6.1.0-14.14_s390x.deb ... Unpacking linux-libc-dev:s390x (6.1.0-14.14) over (5.19.0-21.21) ... Preparing to unpack .../1-libcc1-0_12.2.0-14ubuntu1_s390x.deb ... Unpacking libcc1-0:s390x (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../2-libctf0_2.40-2ubuntu1_s390x.deb ... Unpacking libctf0:s390x (2.40-2ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../3-libctf-nobfd0_2.40-2ubuntu1_s390x.deb ... Unpacking libctf-nobfd0:s390x (2.40-2ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../4-binutils-s390x-linux-gnu_2.40-2ubuntu1_s390x.deb ... Unpacking binutils-s390x-linux-gnu (2.40-2ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../5-libbinutils_2.40-2ubuntu1_s390x.deb ... Unpacking libbinutils:s390x (2.40-2ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../6-binutils-common_2.40-2ubuntu1_s390x.deb ... Unpacking binutils-common:s390x (2.40-2ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../7-binutils_2.40-2ubuntu1_s390x.deb ... Unpacking binutils (2.40-2ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../8-gcc-12-base_12.2.0-14ubuntu1_s390x.deb ... Unpacking gcc-12-base:s390x (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Setting up gcc-12-base:s390x (12.2.0-14ubuntu1) ... (Reading database ... 14905 files and directories currently installed.) Preparing to unpack .../libgcc-s1_12.2.0-14ubuntu1_s390x.deb ... Unpacking libgcc-s1:s390x (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Setting up libgcc-s1:s390x (12.2.0-14ubuntu1) ... (Reading database ... 14905 files and directories currently installed.) Preparing to unpack .../00-libgomp1_12.2.0-14ubuntu1_s390x.deb ... Unpacking libgomp1:s390x (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../01-libitm1_12.2.0-14ubuntu1_s390x.deb ... Unpacking libitm1:s390x (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../02-libatomic1_12.2.0-14ubuntu1_s390x.deb ... Unpacking libatomic1:s390x (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../03-libasan8_12.2.0-14ubuntu1_s390x.deb ... Unpacking libasan8:s390x (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../04-libubsan1_12.2.0-14ubuntu1_s390x.deb ... Unpacking libubsan1:s390x (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../05-g++-12_12.2.0-14ubuntu1_s390x.deb ... Unpacking g++-12 (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../06-libstdc++-12-dev_12.2.0-14ubuntu1_s390x.deb ... Unpacking libstdc++-12-dev:s390x (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../07-libgcc-12-dev_12.2.0-14ubuntu1_s390x.deb ... Unpacking libgcc-12-dev:s390x (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../08-gcc-12_12.2.0-14ubuntu1_s390x.deb ... Unpacking gcc-12 (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../09-cpp-12_12.2.0-14ubuntu1_s390x.deb ... Unpacking cpp-12 (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../10-libstdc++6_12.2.0-14ubuntu1_s390x.deb ... Unpacking libstdc++6:s390x (12.2.0-14ubuntu1) over (12.2.0-10ubuntu1) ... Setting up libstdc++6:s390x (12.2.0-14ubuntu1) ... (Reading database ... 14905 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.13.dfsg-1ubuntu4_s390x.deb ... Unpacking zlib1g:s390x (1:1.2.13.dfsg-1ubuntu4) over (1:1.2.11.dfsg-4.1ubuntu1) ... Setting up zlib1g:s390x (1:1.2.13.dfsg-1ubuntu4) ... (Reading database ... 14905 files and directories currently installed.) Preparing to unpack .../libmpfr6_4.2.0-1_s390x.deb ... Unpacking libmpfr6:s390x (4.2.0-1) over (4.1.0-3build3) ... Preparing to unpack .../libzstd1_1.5.2+dfsg2-3_s390x.deb ... Unpacking libzstd1:s390x (1.5.2+dfsg2-3) over (1.5.2+dfsg-1) ... Setting up libzstd1:s390x (1.5.2+dfsg2-3) ... (Reading database ... 14905 files and directories currently installed.) Preparing to unpack .../libc6_2.37-0ubuntu1_s390x.deb ... Unpacking libc6:s390x (2.37-0ubuntu1) over (2.36-0ubuntu4) ... Setting up libc6:s390x (2.37-0ubuntu1) ... (Reading database ... 14905 files and directories currently installed.) Preparing to unpack .../liblzma5_5.4.1-0.1_s390x.deb ... Unpacking liblzma5:s390x (5.4.1-0.1) over (5.2.9-0.0) ... Setting up liblzma5:s390x (5.4.1-0.1) ... (Reading database ... 14905 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.1-3ubuntu1_s390x.deb ... Unpacking libgcrypt20:s390x (1.10.1-3ubuntu1) over (1.10.1-2ubuntu1) ... Setting up libgcrypt20:s390x (1.10.1-3ubuntu1) ... (Reading database ... 14905 files and directories currently installed.) Preparing to unpack .../libacl1_2.3.1-3_s390x.deb ... Unpacking libacl1:s390x (2.3.1-3) over (2.3.1-2) ... Setting up libacl1:s390x (2.3.1-3) ... (Reading database ... 14905 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a3.0.7-1.1_all.deb ... Unpacking libaudit-common (1:3.0.7-1.1) over (1:3.0.7-1ubuntu3) ... Setting up libaudit-common (1:3.0.7-1.1) ... (Reading database ... 14905 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.0.7-1.1_s390x.deb ... Unpacking libaudit1:s390x (1:3.0.7-1.1) over (1:3.0.7-1ubuntu3) ... Setting up libaudit1:s390x (1:3.0.7-1.1) ... (Reading database ... 14905 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-3ubuntu1_s390x.deb ... Unpacking libcap2:s390x (1:2.66-3ubuntu1) over (1:2.44-1build3) ... Setting up libcap2:s390x (1:2.66-3ubuntu1) ... (Reading database ... 14907 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.42-1_s390x.deb ... Unpacking libpcre2-8-0:s390x (10.42-1) over (10.40-1ubuntu1) ... Setting up libpcre2-8-0:s390x (10.42-1) ... (Reading database ... 14907 files and directories currently installed.) Preparing to unpack .../libselinux1_3.4-1build3_s390x.deb ... Unpacking libselinux1:s390x (3.4-1build3) over (3.4-1build1) ... Setting up libselinux1:s390x (3.4-1build3) ... (Reading database ... 14907 files and directories currently installed.) Preparing to unpack .../libperl5.36_5.36.0-7_s390x.deb ... Unpacking libperl5.36:s390x (5.36.0-7) over (5.36.0-4ubuntu2) ... Preparing to unpack .../perl_5.36.0-7_s390x.deb ... Unpacking perl (5.36.0-7) over (5.36.0-4ubuntu2) ... Preparing to unpack .../perl-base_5.36.0-7_s390x.deb ... Unpacking perl-base (5.36.0-7) over (5.36.0-4ubuntu2) ... Setting up perl-base (5.36.0-7) ... (Reading database ... 14907 files and directories currently installed.) Preparing to unpack .../perl-modules-5.36_5.36.0-7_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7) over (5.36.0-4ubuntu2) ... Preparing to unpack .../libdb5.3_5.3.28+dfsg2-1_s390x.deb ... Unpacking libdb5.3:s390x (5.3.28+dfsg2-1) over (5.3.28+dfsg1-0.10) ... Setting up libdb5.3:s390x (5.3.28+dfsg2-1) ... (Reading database ... 14907 files and directories currently installed.) Preparing to unpack .../debconf_1.5.82_all.deb ... Unpacking debconf (1.5.82) over (1.5.79ubuntu1) ... Setting up debconf (1.5.82) ... (Reading database ... 14907 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.7-1ubuntu1_s390x.deb ... Unpacking libssl3:s390x (3.0.7-1ubuntu1) over (3.0.5-2ubuntu2) ... Preparing to unpack .../systemd-sysv_252.4-1ubuntu1_s390x.deb ... Unpacking systemd-sysv (252.4-1ubuntu1) over (251.4-1ubuntu7) ... Setting up libssl3:s390x (3.0.7-1ubuntu1) ... (Reading database ... 14908 files and directories currently installed.) Preparing to unpack .../systemd_252.4-1ubuntu1_s390x.deb ... Unpacking systemd (252.4-1ubuntu1) over (251.4-1ubuntu7) ... Preparing to unpack .../libsystemd-shared_252.4-1ubuntu1_s390x.deb ... Unpacking libsystemd-shared:s390x (252.4-1ubuntu1) over (251.4-1ubuntu7) ... Preparing to unpack .../libp11-kit0_0.24.1-2ubuntu1_s390x.deb ... Unpacking libp11-kit0:s390x (0.24.1-2ubuntu1) over (0.24.1-1ubuntu2) ... Setting up libp11-kit0:s390x (0.24.1-2ubuntu1) ... (Reading database ... 14920 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.4-1ubuntu1_s390x.deb ... Unpacking libsystemd0:s390x (252.4-1ubuntu1) over (251.4-1ubuntu7) ... Setting up libsystemd0:s390x (252.4-1ubuntu1) ... (Reading database ... 14921 files and directories currently installed.) Preparing to unpack .../libudev1_252.4-1ubuntu1_s390x.deb ... Unpacking libudev1:s390x (252.4-1ubuntu1) over (251.4-1ubuntu7) ... Setting up libudev1:s390x (252.4-1ubuntu1) ... (Reading database ... 14922 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.5.5_s390x.deb ... Unpacking libapt-pkg6.0:s390x (2.5.5) over (2.5.4) ... Setting up libapt-pkg6.0:s390x (2.5.5) ... (Reading database ... 14922 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.19ubuntu3_s390x.deb ... Unpacking dpkg (1.21.19ubuntu3) over (1.21.11ubuntu2) ... Setting up dpkg (1.21.19ubuntu3) ... (Reading database ... 14921 files and directories currently installed.) Preparing to unpack .../archives/grep_3.8-5_s390x.deb ... Unpacking grep (3.8-5) over (3.8-3) ... Setting up grep (3.8-5) ... (Reading database ... 14921 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4-2_s390x.deb ... Unpacking ncurses-bin (6.4-2) over (6.3+20220423-2) ... Setting up ncurses-bin (6.4-2) ... (Reading database ... 14921 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-1_s390x.deb ... Unpacking sed (4.9-1) over (4.8-1ubuntu2) ... Setting up sed (4.9-1) ... (Reading database ... 14921 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4-2_all.deb ... Unpacking ncurses-base (6.4-2) over (6.3+20220423-2) ... Setting up ncurses-base (6.4-2) ... (Reading database ... 14921 files and directories currently installed.) Preparing to unpack .../archives/lsb-base_11.6_all.deb ... Unpacking lsb-base (11.6) over (11.2ubuntu1) ... Preparing to unpack .../sysvinit-utils_3.05-7ubuntu2_s390x.deb ... Unpacking sysvinit-utils (3.05-7ubuntu2) over (3.04-1ubuntu1) ... Setting up sysvinit-utils (3.05-7ubuntu2) ... (Reading database ... 14921 files and directories currently installed.) Preparing to unpack .../adduser_3.129ubuntu1_all.deb ... moving unchanged adduser.conf to adduser.conf.update-old. New dpkg-conffile will come from the package. Unpacking adduser (3.129ubuntu1) over (3.121ubuntu1) ... Setting up adduser (3.129ubuntu1) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... 14888 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.40-1ubuntu2_s390x.deb ... Unpacking gpgv (2.2.40-1ubuntu2) over (2.2.40-1ubuntu1) ... Setting up gpgv (2.2.40-1ubuntu2) ... (Reading database ... 14888 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.8-4ubuntu1_s390x.deb ... Unpacking libgnutls30:s390x (3.7.8-4ubuntu1) over (3.7.7-2ubuntu2) ... Setting up libgnutls30:s390x (3.7.8-4ubuntu1) ... (Reading database ... 14888 files and directories currently installed.) Preparing to unpack .../archives/apt_2.5.5_s390x.deb ... Unpacking apt (2.5.5) over (2.5.4) ... Setting up apt (2.5.5) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... (Reading database ... 14888 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.5.1-4_s390x.deb ... Unpacking libattr1:s390x (1:2.5.1-4) over (1:2.5.1-3) ... Setting up libattr1:s390x (1:2.5.1-4) ... (Reading database ... 14888 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.4-1build3_all.deb ... Unpacking libsemanage-common (3.4-1build3) over (3.4-1build1) ... Setting up libsemanage-common (3.4-1build3) ... (Reading database ... 14888 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.4-1build3_s390x.deb ... Unpacking libsemanage2:s390x (3.4-1build3) over (3.4-1build1) ... Setting up libsemanage2:s390x (3.4-1build3) ... (Reading database ... 14888 files and directories currently installed.) Preparing to unpack .../libncurses6_6.4-2_s390x.deb ... Unpacking libncurses6:s390x (6.4-2) over (6.3+20220423-2) ... Preparing to unpack .../libncursesw6_6.4-2_s390x.deb ... Unpacking libncursesw6:s390x (6.4-2) over (6.3+20220423-2) ... Preparing to unpack .../libtinfo6_6.4-2_s390x.deb ... Unpacking libtinfo6:s390x (6.4-2) over (6.3+20220423-2) ... Setting up libtinfo6:s390x (6.4-2) ... (Reading database ... 14888 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) over (0.0.17) ... Preparing to unpack .../01-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) over (8.2-1.2) ... Preparing to unpack .../02-libreadline8_8.2-1.3_s390x.deb ... Unpacking libreadline8:s390x (8.2-1.3) over (8.2-1.2) ... Preparing to unpack .../03-libsqlite3-0_3.40.1-1_s390x.deb ... Unpacking libsqlite3-0:s390x (3.40.1-1) over (3.40.0-1) ... Preparing to unpack .../04-openssl_3.0.7-1ubuntu1_s390x.deb ... Unpacking openssl (3.0.7-1ubuntu1) over (3.0.5-2ubuntu2) ... Preparing to unpack .../05-tzdata_2022g-2ubuntu1_all.deb ... Unpacking tzdata (2022g-2ubuntu1) over (2022g-1ubuntu1) ... Preparing to unpack .../06-xz-utils_5.4.1-0.1_s390x.deb ... Unpacking xz-utils (5.4.1-0.1) over (5.2.9-0.0) ... Preparing to unpack .../07-advancecomp_2.5-1_s390x.deb ... Unpacking advancecomp (2.5-1) over (2.4-1) ... Preparing to unpack .../08-dpkg-dev_1.21.19ubuntu3_all.deb ... Unpacking dpkg-dev (1.21.19ubuntu3) over (1.21.11ubuntu2) ... Preparing to unpack .../09-libdpkg-perl_1.21.19ubuntu3_all.deb ... Unpacking libdpkg-perl (1.21.19ubuntu3) over (1.21.11ubuntu2) ... Preparing to unpack .../10-libfakeroot_1.30.1-1.1ubuntu1_s390x.deb ... Unpacking libfakeroot:s390x (1.30.1-1.1ubuntu1) over (1.30.1-1ubuntu1) ... Preparing to unpack .../11-fakeroot_1.30.1-1.1ubuntu1_s390x.deb ... Unpacking fakeroot (1.30.1-1.1ubuntu1) over (1.30.1-1ubuntu1) ... Preparing to unpack .../12-gpg_2.2.40-1ubuntu2_s390x.deb ... Unpacking gpg (2.2.40-1ubuntu2) over (2.2.40-1ubuntu1) ... Preparing to unpack .../13-gpgconf_2.2.40-1ubuntu2_s390x.deb ... Unpacking gpgconf (2.2.40-1ubuntu2) over (2.2.40-1ubuntu1) ... Preparing to unpack .../14-gpg-agent_2.2.40-1ubuntu2_s390x.deb ... Unpacking gpg-agent (2.2.40-1ubuntu2) over (2.2.40-1ubuntu1) ... Preparing to unpack .../15-pkgbinarymangler_151_all.deb ... Unpacking pkgbinarymangler (151) over (149) ... Setting up lsb-base (11.6) ... Setting up libsqlite3-0:s390x (3.40.1-1) ... Setting up binutils-common:s390x (2.40-2ubuntu1) ... Setting up linux-libc-dev:s390x (6.1.0-14.14) ... Setting up libctf-nobfd0:s390x (2.40-2ubuntu1) ... Setting up libgomp1:s390x (12.2.0-14ubuntu1) ... Setting up libfakeroot:s390x (1.30.1-1.1ubuntu1) ... Setting up tzdata (2022g-2ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Feb 6 17:43:09 UTC 2023. Universal Time is now: Mon Feb 6 17:43:09 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.30.1-1.1ubuntu1) ... Setting up perl-modules-5.36 (5.36.0-7) ... Setting up libmpfr6:s390x (4.2.0-1) ... Setting up libncurses6:s390x (6.4-2) ... Setting up xz-utils (5.4.1-0.1) ... Setting up libatomic1:s390x (12.2.0-14ubuntu1) ... Setting up libsystemd-shared:s390x (252.4-1ubuntu1) ... Setting up libncursesw6:s390x (6.4-2) ... Setting up libubsan1:s390x (12.2.0-14ubuntu1) ... Setting up advancecomp (2.5-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libcrypt-dev:s390x (1:4.4.33-2) ... Setting up libasan8:s390x (12.2.0-14ubuntu1) ... Setting up libbinutils:s390x (2.40-2ubuntu1) ... Setting up libc-dev-bin (2.37-0ubuntu1) ... Setting up openssl (3.0.7-1ubuntu1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.2-1.3) ... Setting up libcc1-0:s390x (12.2.0-14ubuntu1) ... Setting up libperl5.36:s390x (5.36.0-7) ... Setting up libitm1:s390x (12.2.0-14ubuntu1) ... Setting up libctf0:s390x (2.40-2ubuntu1) ... Setting up cpp-12 (12.2.0-14ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.40-2ubuntu1) ... Setting up pkgbinarymangler (151) ... Setting up libreadline8:s390x (8.2-1.3) ... Setting up systemd (252.4-1ubuntu1) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up binutils (2.40-2ubuntu1) ... Setting up perl (5.36.0-7) ... Setting up libgcc-12-dev:s390x (12.2.0-14ubuntu1) ... Setting up libdpkg-perl (1.21.19ubuntu3) ... Setting up gpgconf (2.2.40-1ubuntu2) ... Setting up libc6-dev:s390x (2.37-0ubuntu1) ... Setting up gpg (2.2.40-1ubuntu2) ... Setting up systemd-sysv (252.4-1ubuntu1) ... Setting up gpg-agent (2.2.40-1ubuntu2) ... Setting up libstdc++-12-dev:s390x (12.2.0-14ubuntu1) ... Setting up dpkg-dev (1.21.19ubuntu3) ... Setting up gcc-12 (12.2.0-14ubuntu1) ... Setting up g++-12 (12.2.0-14ubuntu1) ... Processing triggers for debianutils (5.7-0.4) ... Processing triggers for libc-bin (2.37-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-25560814 s390x lunar-proposed -c chroot:build-PACKAGEBUILD-25560814 --arch=s390x --dist=lunar-proposed --nolog kleborate_2.3.1-1.dsc Initiating build PACKAGEBUILD-25560814 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-137-generic #154-Ubuntu SMP Thu Jan 5 17:03:11 UTC 2023 s390x sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-s390x-001.buildd +==============================================================================+ | kleborate 2.3.1-1 (s390x) Mon, 06 Feb 2023 17:43:21 +0000 | +==============================================================================+ Package: kleborate Version: 2.3.1-1 Source Version: 2.3.1-1 Distribution: lunar-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-25560814/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/kleborate-pzoTYt/resolver-6u3PCE' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- kleborate_2.3.1-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/kleborate-pzoTYt/kleborate-2.3.1' with '<>' I: NOTICE: Log filtering will replace 'build/kleborate-pzoTYt' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, ncbi-blast+, mash, kaptive, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, ncbi-blast+, mash, kaptive, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [419 B] Get:5 copy:/<>/apt_archive ./ Packages [491 B] Fetched 1867 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-urw-base35 gettext gettext-base groff-base intltool-debian kaptive libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcapnp-0.9.2 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmpdec3 libmurmurhash2 libopenjp2-7 libpcre3 libpipeline1 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libpython3.11-minimal libpython3.11-stdlib libraqm0 libsub-override-perl libtiff6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap man-db mash media-types mime-support ncbi-blast+ ncbi-data po-debconf python3 python3-biopython python3-distutils python3-lib2to3 python3-minimal python3-numpy python3-pil python3-pkg-resources python3-renderpm python3-reportlab python3-reportlab-accel python3-setuptools python3.10 python3.10-minimal python3.11 python3.11-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build python3-tomli python3-installer fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev groff kaptive-data kaptive-example low-memory-monitor gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise gfortran python3-dev python3-pytest python-pil-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-setuptools-doc python3.10-venv python3.10-doc binfmt-support python3.11-venv python3.11-doc sgml-base-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl python-biopython-doc python3-olefile The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-urw-base35 gettext gettext-base groff-base intltool-debian kaptive libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcapnp-0.9.2 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmpdec3 libmurmurhash2 libopenjp2-7 libpcre3 libpipeline1 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libpython3.11-minimal libpython3.11-stdlib libraqm0 libsub-override-perl libtiff6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap man-db mash media-types mime-support ncbi-blast+ ncbi-data po-debconf python3 python3-biopython python3-distutils python3-lib2to3 python3-minimal python3-numpy python3-pil python3-pkg-resources python3-renderpm python3-reportlab python3-reportlab-accel python3-setuptools python3.10 python3.10-minimal python3.11 python3.11-minimal sbuild-build-depends-main-dummy sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 105 newly installed, 0 to remove and 0 not upgraded. Need to get 74.6 MB of archives. After this operation, 284 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [718 B] Get:2 http://ftpmaster.internal/ubuntu lunar/main s390x libpython3.11-minimal s390x 3.11.1-2 [826 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main s390x libexpat1 s390x 2.5.0-1 [81.6 kB] Get:4 http://ftpmaster.internal/ubuntu lunar/main s390x python3.11-minimal s390x 3.11.1-2 [2125 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x python3-minimal s390x 3.11.1-3 [24.6 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x media-types all 9.0.0 [26.0 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main s390x mailcap all 3.70+nmu1ubuntu1 [23.8 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main s390x mime-support all 3.66 [3696 B] Get:9 http://ftpmaster.internal/ubuntu lunar/main s390x libmpdec3 s390x 2.5.1-2build2 [90.8 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main s390x libpython3.11-stdlib s390x 3.11.1-2 [1785 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main s390x python3.11 s390x 3.11.1-2 [561 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libpython3-stdlib s390x 3.11.1-3 [7208 B] Get:13 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x python3 s390x 3.11.1-3 [22.9 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main s390x libpython3.10-minimal s390x 3.10.9-1 [798 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main s390x python3.10-minimal s390x 3.10.9-1 [1942 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main s390x sgml-base all 1.31 [11.4 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main s390x libbsd0 s390x 0.11.7-2 [45.2 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main s390x libelf1 s390x 0.188-2.1 [56.7 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main s390x libfribidi0 s390x 1.0.8-2.1ubuntu1 [27.1 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main s390x libglib2.0-0 s390x 2.74.5-1 [1409 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main s390x libpython3.10-stdlib s390x 3.10.9-1 [1750 kB] Get:22 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libicu72 s390x 72.1-3ubuntu1 [10.7 MB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libxml2 s390x 2.9.14+dfsg-1.1build1 [717 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x python3-pkg-resources all 66.1.1-1 [225 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main s390x python3.10 s390x 3.10.9-1 [503 kB] Get:26 http://ftpmaster.internal/ubuntu lunar/main s390x bsdextrautils s390x 2.38.1-4ubuntu1 [71.3 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main s390x libmagic-mgc s390x 1:5.44-3 [296 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main s390x libmagic1 s390x 1:5.44-3 [84.5 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main s390x file s390x 1:5.44-3 [21.7 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main s390x gettext-base s390x 0.21-11 [36.4 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main s390x libuchardet0 s390x 0.0.7-1build2 [76.4 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main s390x groff-base s390x 1.22.4-9 [914 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main s390x liblmdb0 s390x 0.9.24-1build2 [48.6 kB] Get:34 http://ftpmaster.internal/ubuntu lunar/main s390x libpipeline1 s390x 1.5.7-1 [23.4 kB] Get:35 http://ftpmaster.internal/ubuntu lunar/main s390x libxau6 s390x 1:1.0.9-1build5 [7522 B] Get:36 http://ftpmaster.internal/ubuntu lunar/main s390x libxdmcp6 s390x 1:1.1.3-0ubuntu5 [10.8 kB] Get:37 http://ftpmaster.internal/ubuntu lunar/main s390x libxcb1 s390x 1.15-1 [48.3 kB] Get:38 http://ftpmaster.internal/ubuntu lunar/main s390x man-db s390x 2.11.2-1 [1216 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x m4 s390x 1.4.19-3 [243 kB] Get:40 http://ftpmaster.internal/ubuntu lunar/main s390x autoconf all 2.71-3 [339 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main s390x autotools-dev all 20220109.1 [44.9 kB] Get:42 http://ftpmaster.internal/ubuntu lunar/main s390x automake all 1:1.16.5-1.3 [558 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main s390x autopoint all 0.21-11 [420 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main s390x libdebhelper-perl all 13.11.4ubuntu3 [66.1 kB] Get:45 http://ftpmaster.internal/ubuntu lunar/main s390x libtool all 2.4.7-5 [166 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main s390x dh-autoreconf all 20 [16.1 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:48 http://ftpmaster.internal/ubuntu lunar/main s390x libsub-override-perl all 0.09-4 [8706 B] Get:49 http://ftpmaster.internal/ubuntu lunar/main s390x libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:50 http://ftpmaster.internal/ubuntu lunar/main s390x dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:51 http://ftpmaster.internal/ubuntu lunar/main s390x libdw1 s390x 0.188-2.1 [247 kB] Get:52 http://ftpmaster.internal/ubuntu lunar/main s390x debugedit s390x 1:5.0-5 [47.5 kB] Get:53 http://ftpmaster.internal/ubuntu lunar/main s390x dwz s390x 0.15-1 [108 kB] Get:54 http://ftpmaster.internal/ubuntu lunar/main s390x gettext s390x 0.21-11 [851 kB] Get:55 http://ftpmaster.internal/ubuntu lunar/main s390x intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:56 http://ftpmaster.internal/ubuntu lunar/main s390x po-debconf all 1.0.21+nmu1 [233 kB] Get:57 http://ftpmaster.internal/ubuntu lunar/main s390x debhelper all 13.11.4ubuntu3 [925 kB] Get:58 http://ftpmaster.internal/ubuntu lunar/main s390x python3-lib2to3 all 3.10.8-1 [77.5 kB] Get:59 http://ftpmaster.internal/ubuntu lunar/main s390x python3-distutils all 3.10.8-1 [139 kB] Get:60 http://ftpmaster.internal/ubuntu lunar/universe s390x dh-python all 5.20230130 [101 kB] Get:61 http://ftpmaster.internal/ubuntu lunar/main s390x libfontenc1 s390x 1:1.1.4-1build3 [14.2 kB] Get:62 http://ftpmaster.internal/ubuntu lunar/main s390x libbrotli1 s390x 1.0.9-2build7 [311 kB] Get:63 http://ftpmaster.internal/ubuntu lunar/main s390x libfreetype6 s390x 2.12.1+dfsg-4 [384 kB] Get:64 http://ftpmaster.internal/ubuntu lunar/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:65 http://ftpmaster.internal/ubuntu lunar/main s390x xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] Get:66 http://ftpmaster.internal/ubuntu lunar/main s390x xfonts-utils s390x 1:7.7+6build2 [94.8 kB] Get:67 http://ftpmaster.internal/ubuntu lunar/main s390x fonts-urw-base35 all 20200910-7 [11.0 MB] Get:68 http://ftpmaster.internal/ubuntu lunar/main s390x libblas3 s390x 3.11.0-2 [180 kB] Get:69 http://ftpmaster.internal/ubuntu lunar/main s390x libgfortran5 s390x 12.2.0-14ubuntu1 [468 kB] Get:70 http://ftpmaster.internal/ubuntu lunar/main s390x liblapack3 s390x 3.11.0-2 [2233 kB] Get:71 http://ftpmaster.internal/ubuntu lunar/main s390x python3-numpy s390x 1:1.24.1-2 [4244 kB] Get:72 http://ftpmaster.internal/ubuntu lunar/main s390x python3-renderpm s390x 3.6.12-1 [62.1 kB] Get:73 http://ftpmaster.internal/ubuntu lunar/main s390x python3-reportlab-accel s390x 3.6.12-1 [22.0 kB] Get:74 http://ftpmaster.internal/ubuntu lunar/main s390x libimagequant0 s390x 2.17.0-1 [35.7 kB] Get:75 http://ftpmaster.internal/ubuntu lunar/main s390x libjpeg-turbo8 s390x 2.1.2-0ubuntu1 [119 kB] Get:76 http://ftpmaster.internal/ubuntu lunar/main s390x libjpeg8 s390x 8c-2ubuntu10 [2264 B] Get:77 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x liblcms2-2 s390x 2.14-1build1 [156 kB] Get:78 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libopenjp2-7 s390x 2.5.0-1build1 [169 kB] Get:79 http://ftpmaster.internal/ubuntu lunar/main s390x libgraphite2-3 s390x 1.3.14-1build2 [68.1 kB] Get:80 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libharfbuzz0b s390x 6.0.0+dfsg-3build1 [397 kB] Get:81 http://ftpmaster.internal/ubuntu lunar/main s390x libraqm0 s390x 0.7.0-4.1 [11.2 kB] Get:82 http://ftpmaster.internal/ubuntu lunar/main s390x libdeflate0 s390x 1.14-1 [63.1 kB] Get:83 http://ftpmaster.internal/ubuntu lunar/main s390x libjbig0 s390x 2.1-6ubuntu1 [29.7 kB] Get:84 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libwebp7 s390x 1.2.4-0.1build1 [171 kB] Get:85 http://ftpmaster.internal/ubuntu lunar/main s390x libtiff6 s390x 4.5.0-4ubuntu1 [186 kB] Get:86 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libwebpdemux2 s390x 1.2.4-0.1build1 [9656 B] Get:87 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libwebpmux3 s390x 1.2.4-0.1build1 [19.3 kB] Get:88 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x python3-pil s390x 9.4.0-1.1build1 [437 kB] Get:89 http://ftpmaster.internal/ubuntu lunar/main s390x python3-reportlab all 3.6.12-1 [564 kB] Get:90 http://ftpmaster.internal/ubuntu lunar/main s390x xml-core all 0.18+nmu1 [21.6 kB] Get:91 http://ftpmaster.internal/ubuntu lunar/universe s390x w3c-sgml-lib all 1.3-3 [280 kB] Get:92 http://ftpmaster.internal/ubuntu lunar/universe s390x python3-biopython s390x 1.80+dfsg-4 [1640 kB] Get:93 http://ftpmaster.internal/ubuntu lunar/universe s390x ncbi-data all 6.1.20170106+dfsg1-10 [4395 kB] Get:94 http://ftpmaster.internal/ubuntu lunar/universe s390x libmbedcrypto7 s390x 2.28.2-1 [199 kB] Get:95 http://ftpmaster.internal/ubuntu lunar/universe s390x libmbedx509-1 s390x 2.28.2-1 [44.8 kB] Get:96 http://ftpmaster.internal/ubuntu lunar/universe s390x libmbedtls14 s390x 2.28.2-1 [78.8 kB] Get:97 http://ftpmaster.internal/ubuntu lunar/main s390x libpcre3 s390x 2:8.39-15 [170 kB] Get:98 http://ftpmaster.internal/ubuntu lunar/universe s390x ncbi-blast+ s390x 2.12.0+ds-3build1 [11.6 MB] Get:99 http://ftpmaster.internal/ubuntu lunar/universe s390x kaptive all 2.0.4-1 [24.3 kB] Get:100 http://ftpmaster.internal/ubuntu lunar/universe s390x libcapnp-0.9.2 s390x 0.9.2-2 [1165 kB] Get:101 http://ftpmaster.internal/ubuntu lunar/universe s390x libgslcblas0 s390x 2.7.1+dfsg-3 [94.3 kB] Get:102 http://ftpmaster.internal/ubuntu lunar/universe s390x libgsl27 s390x 2.7.1+dfsg-3 [949 kB] Get:103 http://ftpmaster.internal/ubuntu lunar/universe s390x libmurmurhash2 s390x 1.5-3 [5920 B] Get:104 http://ftpmaster.internal/ubuntu lunar/universe s390x mash s390x 2.3+dfsg-3build1 [146 kB] Get:105 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x python3-setuptools all 66.1.1-1 [453 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 74.6 MB in 10s (7499 kB/s) Selecting previously unselected package libpython3.11-minimal:s390x. (Reading database ... 14973 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.1-2_s390x.deb ... Unpacking libpython3.11-minimal:s390x (3.11.1-2) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../libexpat1_2.5.0-1_s390x.deb ... Unpacking libexpat1:s390x (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.1-2_s390x.deb ... Unpacking python3.11-minimal (3.11.1-2) ... Setting up libpython3.11-minimal:s390x (3.11.1-2) ... Setting up libexpat1:s390x (2.5.0-1) ... Setting up python3.11-minimal (3.11.1-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 15287 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.1-3_s390x.deb ... Unpacking python3-minimal (3.11.1-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_9.0.0_all.deb ... Unpacking media-types (9.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.70+nmu1ubuntu1_all.deb ... Unpacking mailcap (3.70+nmu1ubuntu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:s390x. Preparing to unpack .../4-libmpdec3_2.5.1-2build2_s390x.deb ... Unpacking libmpdec3:s390x (2.5.1-2build2) ... Selecting previously unselected package libpython3.11-stdlib:s390x. Preparing to unpack .../5-libpython3.11-stdlib_3.11.1-2_s390x.deb ... Unpacking libpython3.11-stdlib:s390x (3.11.1-2) ... Selecting previously unselected package python3.11. Preparing to unpack .../6-python3.11_3.11.1-2_s390x.deb ... Unpacking python3.11 (3.11.1-2) ... Selecting previously unselected package libpython3-stdlib:s390x. Preparing to unpack .../7-libpython3-stdlib_3.11.1-3_s390x.deb ... Unpacking libpython3-stdlib:s390x (3.11.1-3) ... Setting up python3-minimal (3.11.1-3) ... Selecting previously unselected package python3. (Reading database ... 15724 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.1-3_s390x.deb ... Unpacking python3 (3.11.1-3) ... Selecting previously unselected package libpython3.10-minimal:s390x. Preparing to unpack .../01-libpython3.10-minimal_3.10.9-1_s390x.deb ... Unpacking libpython3.10-minimal:s390x (3.10.9-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../02-python3.10-minimal_3.10.9-1_s390x.deb ... Unpacking python3.10-minimal (3.10.9-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../03-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libbsd0:s390x. Preparing to unpack .../04-libbsd0_0.11.7-2_s390x.deb ... Unpacking libbsd0:s390x (0.11.7-2) ... Selecting previously unselected package libelf1:s390x. Preparing to unpack .../05-libelf1_0.188-2.1_s390x.deb ... Unpacking libelf1:s390x (0.188-2.1) ... Selecting previously unselected package libfribidi0:s390x. Preparing to unpack .../06-libfribidi0_1.0.8-2.1ubuntu1_s390x.deb ... Unpacking libfribidi0:s390x (1.0.8-2.1ubuntu1) ... Selecting previously unselected package libglib2.0-0:s390x. Preparing to unpack .../07-libglib2.0-0_2.74.5-1_s390x.deb ... Unpacking libglib2.0-0:s390x (2.74.5-1) ... Selecting previously unselected package libpython3.10-stdlib:s390x. Preparing to unpack .../08-libpython3.10-stdlib_3.10.9-1_s390x.deb ... Unpacking libpython3.10-stdlib:s390x (3.10.9-1) ... Selecting previously unselected package libicu72:s390x. Preparing to unpack .../09-libicu72_72.1-3ubuntu1_s390x.deb ... Unpacking libicu72:s390x (72.1-3ubuntu1) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../10-libxml2_2.9.14+dfsg-1.1build1_s390x.deb ... Unpacking libxml2:s390x (2.9.14+dfsg-1.1build1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../11-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3.10. Preparing to unpack .../12-python3.10_3.10.9-1_s390x.deb ... Unpacking python3.10 (3.10.9-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../13-bsdextrautils_2.38.1-4ubuntu1_s390x.deb ... Unpacking bsdextrautils (2.38.1-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../14-libmagic-mgc_1%3a5.44-3_s390x.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../15-libmagic1_1%3a5.44-3_s390x.deb ... Unpacking libmagic1:s390x (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../16-file_1%3a5.44-3_s390x.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../17-gettext-base_0.21-11_s390x.deb ... Unpacking gettext-base (0.21-11) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../18-libuchardet0_0.0.7-1build2_s390x.deb ... Unpacking libuchardet0:s390x (0.0.7-1build2) ... Selecting previously unselected package groff-base. Preparing to unpack .../19-groff-base_1.22.4-9_s390x.deb ... Unpacking groff-base (1.22.4-9) ... Selecting previously unselected package liblmdb0:s390x. Preparing to unpack .../20-liblmdb0_0.9.24-1build2_s390x.deb ... Unpacking liblmdb0:s390x (0.9.24-1build2) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../21-libpipeline1_1.5.7-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.7-1) ... Selecting previously unselected package libxau6:s390x. Preparing to unpack .../22-libxau6_1%3a1.0.9-1build5_s390x.deb ... Unpacking libxau6:s390x (1:1.0.9-1build5) ... Selecting previously unselected package libxdmcp6:s390x. Preparing to unpack .../23-libxdmcp6_1%3a1.1.3-0ubuntu5_s390x.deb ... Unpacking libxdmcp6:s390x (1:1.1.3-0ubuntu5) ... Selecting previously unselected package libxcb1:s390x. Preparing to unpack .../24-libxcb1_1.15-1_s390x.deb ... Unpacking libxcb1:s390x (1.15-1) ... Selecting previously unselected package man-db. Preparing to unpack .../25-man-db_2.11.2-1_s390x.deb ... Unpacking man-db (2.11.2-1) ... Selecting previously unselected package m4. Preparing to unpack .../26-m4_1.4.19-3_s390x.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../27-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../28-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../29-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../30-autopoint_0.21-11_all.deb ... Unpacking autopoint (0.21-11) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../31-libdebhelper-perl_13.11.4ubuntu3_all.deb ... Unpacking libdebhelper-perl (13.11.4ubuntu3) ... Selecting previously unselected package libtool. Preparing to unpack .../32-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../33-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../34-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../35-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../36-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../37-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libdw1:s390x. Preparing to unpack .../38-libdw1_0.188-2.1_s390x.deb ... Unpacking libdw1:s390x (0.188-2.1) ... Selecting previously unselected package debugedit. Preparing to unpack .../39-debugedit_1%3a5.0-5_s390x.deb ... Unpacking debugedit (1:5.0-5) ... Selecting previously unselected package dwz. Preparing to unpack .../40-dwz_0.15-1_s390x.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../41-gettext_0.21-11_s390x.deb ... Unpacking gettext (0.21-11) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../42-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../43-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../44-debhelper_13.11.4ubuntu3_all.deb ... Unpacking debhelper (13.11.4ubuntu3) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../45-python3-lib2to3_3.10.8-1_all.deb ... Unpacking python3-lib2to3 (3.10.8-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../46-python3-distutils_3.10.8-1_all.deb ... Unpacking python3-distutils (3.10.8-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../47-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Selecting previously unselected package libfontenc1:s390x. Preparing to unpack .../48-libfontenc1_1%3a1.1.4-1build3_s390x.deb ... Unpacking libfontenc1:s390x (1:1.1.4-1build3) ... Selecting previously unselected package libbrotli1:s390x. Preparing to unpack .../49-libbrotli1_1.0.9-2build7_s390x.deb ... Unpacking libbrotli1:s390x (1.0.9-2build7) ... Selecting previously unselected package libfreetype6:s390x. Preparing to unpack .../50-libfreetype6_2.12.1+dfsg-4_s390x.deb ... Unpacking libfreetype6:s390x (2.12.1+dfsg-4) ... Selecting previously unselected package x11-common. Preparing to unpack .../51-x11-common_1%3a7.7+23ubuntu2_all.deb ... Unpacking x11-common (1:7.7+23ubuntu2) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../52-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../53-xfonts-utils_1%3a7.7+6build2_s390x.deb ... Unpacking xfonts-utils (1:7.7+6build2) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../54-fonts-urw-base35_20200910-7_all.deb ... Unpacking fonts-urw-base35 (20200910-7) ... Selecting previously unselected package libblas3:s390x. Preparing to unpack .../55-libblas3_3.11.0-2_s390x.deb ... Unpacking libblas3:s390x (3.11.0-2) ... Selecting previously unselected package libgfortran5:s390x. Preparing to unpack .../56-libgfortran5_12.2.0-14ubuntu1_s390x.deb ... Unpacking libgfortran5:s390x (12.2.0-14ubuntu1) ... Selecting previously unselected package liblapack3:s390x. Preparing to unpack .../57-liblapack3_3.11.0-2_s390x.deb ... Unpacking liblapack3:s390x (3.11.0-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../58-python3-numpy_1%3a1.24.1-2_s390x.deb ... Unpacking python3-numpy (1:1.24.1-2) ... Selecting previously unselected package python3-renderpm:s390x. Preparing to unpack .../59-python3-renderpm_3.6.12-1_s390x.deb ... Unpacking python3-renderpm:s390x (3.6.12-1) ... Selecting previously unselected package python3-reportlab-accel:s390x. Preparing to unpack .../60-python3-reportlab-accel_3.6.12-1_s390x.deb ... Unpacking python3-reportlab-accel:s390x (3.6.12-1) ... Selecting previously unselected package libimagequant0:s390x. Preparing to unpack .../61-libimagequant0_2.17.0-1_s390x.deb ... Unpacking libimagequant0:s390x (2.17.0-1) ... Selecting previously unselected package libjpeg-turbo8:s390x. Preparing to unpack .../62-libjpeg-turbo8_2.1.2-0ubuntu1_s390x.deb ... Unpacking libjpeg-turbo8:s390x (2.1.2-0ubuntu1) ... Selecting previously unselected package libjpeg8:s390x. Preparing to unpack .../63-libjpeg8_8c-2ubuntu10_s390x.deb ... Unpacking libjpeg8:s390x (8c-2ubuntu10) ... Selecting previously unselected package liblcms2-2:s390x. Preparing to unpack .../64-liblcms2-2_2.14-1build1_s390x.deb ... Unpacking liblcms2-2:s390x (2.14-1build1) ... Selecting previously unselected package libopenjp2-7:s390x. Preparing to unpack .../65-libopenjp2-7_2.5.0-1build1_s390x.deb ... Unpacking libopenjp2-7:s390x (2.5.0-1build1) ... Selecting previously unselected package libgraphite2-3:s390x. Preparing to unpack .../66-libgraphite2-3_1.3.14-1build2_s390x.deb ... Unpacking libgraphite2-3:s390x (1.3.14-1build2) ... Selecting previously unselected package libharfbuzz0b:s390x. Preparing to unpack .../67-libharfbuzz0b_6.0.0+dfsg-3build1_s390x.deb ... Unpacking libharfbuzz0b:s390x (6.0.0+dfsg-3build1) ... Selecting previously unselected package libraqm0:s390x. Preparing to unpack .../68-libraqm0_0.7.0-4.1_s390x.deb ... Unpacking libraqm0:s390x (0.7.0-4.1) ... Selecting previously unselected package libdeflate0:s390x. Preparing to unpack .../69-libdeflate0_1.14-1_s390x.deb ... Unpacking libdeflate0:s390x (1.14-1) ... Selecting previously unselected package libjbig0:s390x. Preparing to unpack .../70-libjbig0_2.1-6ubuntu1_s390x.deb ... Unpacking libjbig0:s390x (2.1-6ubuntu1) ... Selecting previously unselected package libwebp7:s390x. Preparing to unpack .../71-libwebp7_1.2.4-0.1build1_s390x.deb ... Unpacking libwebp7:s390x (1.2.4-0.1build1) ... Selecting previously unselected package libtiff6:s390x. Preparing to unpack .../72-libtiff6_4.5.0-4ubuntu1_s390x.deb ... Unpacking libtiff6:s390x (4.5.0-4ubuntu1) ... Selecting previously unselected package libwebpdemux2:s390x. Preparing to unpack .../73-libwebpdemux2_1.2.4-0.1build1_s390x.deb ... Unpacking libwebpdemux2:s390x (1.2.4-0.1build1) ... Selecting previously unselected package libwebpmux3:s390x. Preparing to unpack .../74-libwebpmux3_1.2.4-0.1build1_s390x.deb ... Unpacking libwebpmux3:s390x (1.2.4-0.1build1) ... Selecting previously unselected package python3-pil:s390x. Preparing to unpack .../75-python3-pil_9.4.0-1.1build1_s390x.deb ... Unpacking python3-pil:s390x (9.4.0-1.1build1) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../76-python3-reportlab_3.6.12-1_all.deb ... Unpacking python3-reportlab (3.6.12-1) ... Selecting previously unselected package xml-core. Preparing to unpack .../77-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package w3c-sgml-lib. Preparing to unpack .../78-w3c-sgml-lib_1.3-3_all.deb ... Unpacking w3c-sgml-lib (1.3-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../79-python3-biopython_1.80+dfsg-4_s390x.deb ... Unpacking python3-biopython (1.80+dfsg-4) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../80-ncbi-data_6.1.20170106+dfsg1-10_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg1-10) ... Selecting previously unselected package libmbedcrypto7:s390x. Preparing to unpack .../81-libmbedcrypto7_2.28.2-1_s390x.deb ... Unpacking libmbedcrypto7:s390x (2.28.2-1) ... Selecting previously unselected package libmbedx509-1:s390x. Preparing to unpack .../82-libmbedx509-1_2.28.2-1_s390x.deb ... Unpacking libmbedx509-1:s390x (2.28.2-1) ... Selecting previously unselected package libmbedtls14:s390x. Preparing to unpack .../83-libmbedtls14_2.28.2-1_s390x.deb ... Unpacking libmbedtls14:s390x (2.28.2-1) ... Selecting previously unselected package libpcre3:s390x. Preparing to unpack .../84-libpcre3_2%3a8.39-15_s390x.deb ... Unpacking libpcre3:s390x (2:8.39-15) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../85-ncbi-blast+_2.12.0+ds-3build1_s390x.deb ... Unpacking ncbi-blast+ (2.12.0+ds-3build1) ... Selecting previously unselected package kaptive. Preparing to unpack .../86-kaptive_2.0.4-1_all.deb ... Unpacking kaptive (2.0.4-1) ... Selecting previously unselected package libcapnp-0.9.2:s390x. Preparing to unpack .../87-libcapnp-0.9.2_0.9.2-2_s390x.deb ... Unpacking libcapnp-0.9.2:s390x (0.9.2-2) ... Selecting previously unselected package libgslcblas0:s390x. Preparing to unpack .../88-libgslcblas0_2.7.1+dfsg-3_s390x.deb ... Unpacking libgslcblas0:s390x (2.7.1+dfsg-3) ... Selecting previously unselected package libgsl27:s390x. Preparing to unpack .../89-libgsl27_2.7.1+dfsg-3_s390x.deb ... Unpacking libgsl27:s390x (2.7.1+dfsg-3) ... Selecting previously unselected package libmurmurhash2:s390x. Preparing to unpack .../90-libmurmurhash2_1.5-3_s390x.deb ... Unpacking libmurmurhash2:s390x (1.5-3) ... Selecting previously unselected package mash. Preparing to unpack .../91-mash_2.3+dfsg-3build1_s390x.deb ... Unpacking mash (2.3+dfsg-3build1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../92-python3-setuptools_66.1.1-1_all.deb ... Unpacking python3-setuptools (66.1.1-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../93-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up media-types (9.0.0) ... Setting up libpipeline1:s390x (1.5.7-1) ... Setting up liblmdb0:s390x (0.9.24-1build2) ... Setting up libgraphite2-3:s390x (1.3.14-1build2) ... Setting up liblcms2-2:s390x (2.14-1build1) ... Setting up ncbi-data (6.1.20170106+dfsg1-10) ... Setting up libxau6:s390x (1:1.0.9-1build5) ... Setting up libicu72:s390x (72.1-3ubuntu1) ... Setting up bsdextrautils (2.38.1-4ubuntu1) ... Setting up libgslcblas0:s390x (2.7.1+dfsg-3) ... Setting up libmurmurhash2:s390x (1.5-3) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:s390x (2.74.5-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.11.4ubuntu3) ... Setting up libbrotli1:s390x (1.0.9-2build7) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:s390x (1:5.44-3) ... Setting up libdeflate0:s390x (1.14-1) ... Setting up gettext-base (0.21-11) ... Setting up libgsl27:s390x (2.7.1+dfsg-3) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libjbig0:s390x (2.1-6ubuntu1) ... Setting up libpcre3:s390x (2:8.39-15) ... Setting up libfontenc1:s390x (1:1.1.4-1build3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:s390x (3.11.0-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode Setting up libfreetype6:s390x (2.12.1+dfsg-4) ... Setting up libmbedcrypto7:s390x (2.28.2-1) ... Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... Setting up libfribidi0:s390x (1.0.8-2.1ubuntu1) ... Setting up libimagequant0:s390x (2.17.0-1) ... Setting up libpython3.10-minimal:s390x (3.10.9-1) ... Setting up autopoint (0.21-11) ... Setting up libjpeg-turbo8:s390x (2.1.2-0ubuntu1) ... Setting up libgfortran5:s390x (12.2.0-14ubuntu1) ... Setting up libcapnp-0.9.2:s390x (0.9.2-2) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:s390x (1.2.4-0.1build1) ... Setting up libuchardet0:s390x (0.0.7-1build2) ... Setting up libmpdec3:s390x (2.5.1-2build2) ... Setting up libopenjp2-7:s390x (2.5.0-1build1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libharfbuzz0b:s390x (6.0.0+dfsg-3build1) ... Setting up sgml-base (1.31) ... Setting up libwebpmux3:s390x (1.2.4-0.1build1) ... Setting up libbsd0:s390x (0.11.7-2) ... Setting up mailcap (3.70+nmu1ubuntu1) ... Setting up libelf1:s390x (0.188-2.1) ... Setting up libxml2:s390x (2.9.14+dfsg-1.1build1) ... Setting up libjpeg8:s390x (8c-2ubuntu10) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libdw1:s390x (0.188-2.1) ... Setting up libxdmcp6:s390x (1:1.1.3-0ubuntu5) ... Setting up liblapack3:s390x (3.11.0-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode Setting up libxcb1:s390x (1.15-1) ... Setting up gettext (0.21-11) ... Setting up mime-support (3.66) ... Setting up libmbedx509-1:s390x (2.28.2-1) ... Setting up libmbedtls14:s390x (2.28.2-1) ... Setting up libtool (2.4.7-5) ... Setting up libwebpdemux2:s390x (1.2.4-0.1build1) ... Setting up libpython3.11-stdlib:s390x (3.11.1-2) ... Setting up xfonts-utils (1:7.7+6build2) ... Setting up python3.10-minimal (3.10.9-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libpython3.10-stdlib:s390x (3.10.9-1) ... Setting up dh-autoreconf (20) ... Setting up libraqm0:s390x (0.7.0-4.1) ... Setting up mash (2.3+dfsg-3build1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-9) ... Setting up libtiff6:s390x (4.5.0-4ubuntu1) ... Setting up xml-core (0.18+nmu1) ... Setting up debugedit (1:5.0-5) ... Setting up libpython3-stdlib:s390x (3.11.1-3) ... Setting up python3.11 (3.11.1-2) ... Setting up python3.10 (3.10.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.11.1-3) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up man-db (2.11.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up ncbi-blast+ (2.12.0+ds-3build1) ... Setting up python3-pil:s390x (9.4.0-1.1build1) ... Setting up python3-reportlab-accel:s390x (3.6.12-1) ... Setting up python3-reportlab (3.6.12-1) ... Setting up python3-lib2to3 (3.10.8-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.10.8-1) ... Setting up dh-python (5.20230130) ... Setting up python3-renderpm:s390x (3.6.12-1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up debhelper (13.11.4ubuntu3) ... Setting up python3-numpy (1:1.24.1-2) ... Processing triggers for libc-bin (2.37-0ubuntu1) ... Processing triggers for systemd (252.4-1ubuntu1) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4) ... Setting up kaptive (2.0.4-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-137-generic #154-Ubuntu SMP Thu Jan 5 17:03:11 UTC 2023 s390x (s390x) Toolchain package versions: binutils_2.40-2ubuntu1 dpkg-dev_1.21.19ubuntu3 g++-12_12.2.0-14ubuntu1 gcc-12_12.2.0-14ubuntu1 libc6-dev_2.37-0ubuntu1 libstdc++-12-dev_12.2.0-14ubuntu1 libstdc++6_12.2.0-14ubuntu1 linux-libc-dev_6.1.0-14.14 Package versions: adduser_3.129ubuntu1 advancecomp_2.5-1 apt_2.5.5 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-11 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2.15-2ubuntu1 binutils_2.40-2ubuntu1 binutils-common_2.40-2ubuntu1 binutils-s390x-linux-gnu_2.40-2ubuntu1 bsdextrautils_2.38.1-4ubuntu1 bsdutils_1:2.38.1-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016ubuntu1 coreutils_9.1-1ubuntu2 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-14ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1 debconf_1.5.82 debhelper_13.11.4ubuntu3 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-python_5.20230130 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.19ubuntu3 dpkg-dev_1.21.19ubuntu3 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1ubuntu1 fakeroot_1.30.1-1.1ubuntu1 file_1:5.44-3 findutils_4.9.0-3ubuntu1 fonts-urw-base35_20200910-7 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-14ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-14ubuntu1 gcc-12-base_12.2.0-14ubuntu1 gettext_0.21-11 gettext-base_0.21-11 gpg_2.2.40-1ubuntu2 gpg-agent_2.2.40-1ubuntu2 gpgconf_2.2.40-1ubuntu2 gpgv_2.2.40-1ubuntu2 grep_3.8-5 groff-base_1.22.4-9 gzip_1.12-1ubuntu1 hostname_3.23ubuntu2 init_1.65.2 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 kaptive_2.0.4-1 libacl1_2.3.1-3 libapparmor1_3.0.8-1ubuntu1 libapt-pkg6.0_2.5.5 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan8_12.2.0-14ubuntu1 libassuan0_2.5.5-5 libatomic1_12.2.0-14ubuntu1 libattr1_1:2.5.1-4 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.40-2ubuntu1 libblas3_3.11.0-2 libblkid1_2.38.1-4ubuntu1 libbrotli1_1.0.9-2build7 libbsd0_0.11.7-2 libbz2-1.0_1.0.8-5build1 libc-bin_2.37-0ubuntu1 libc-dev-bin_2.37-0ubuntu1 libc6_2.37-0ubuntu1 libc6-dev_2.37-0ubuntu1 libcap-ng0_0.8.3-1build1 libcap2_1:2.66-3ubuntu1 libcapnp-0.9.2_0.9.2-2 libcc1-0_12.2.0-14ubuntu1 libcom-err2_1.46.6~rc1-1ubuntu1 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libcryptsetup12_2:2.5.0-6ubuntu3 libctf-nobfd0_2.40-2ubuntu1 libctf0_2.40-2ubuntu1 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.264ubuntu1 libdebhelper-perl_13.11.4ubuntu3 libdeflate0_1.14-1 libdevmapper1.02.1_2:1.02.185-1ubuntu1 libdpkg-perl_1.21.19ubuntu3 libdw1_0.188-2.1 libelf1_0.188-2.1 libexpat1_2.5.0-1 libext2fs2_1.46.6~rc1-1ubuntu1 libfakeroot_1.30.1-1.1ubuntu1 libfdisk1_2.38.1-4ubuntu1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libfontenc1_1:1.1.4-1build3 libfreetype6_2.12.1+dfsg-4 libfribidi0_1.0.8-2.1ubuntu1 libgcc-12-dev_12.2.0-14ubuntu1 libgcc-s1_12.2.0-14ubuntu1 libgcrypt20_1.10.1-3ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-14ubuntu1 libglib2.0-0_2.74.5-1 libgmp10_2:6.2.1+dfsg1-1.1ubuntu1 libgnutls30_3.7.8-4ubuntu1 libgomp1_12.2.0-14ubuntu1 libgpg-error0_1.46-1 libgraphite2-3_1.3.14-1build2 libgsl27_2.7.1+dfsg-3 libgslcblas0_2.7.1+dfsg-3 libgssapi-krb5-2_1.20.1-1build1 libharfbuzz0b_6.0.0+dfsg-3build1 libhogweed6_3.8.1-2 libicu72_72.1-3ubuntu1 libidn2-0_2.3.3-1build1 libimagequant0_2.17.0-1 libip4tc2_1.8.7-1ubuntu7 libisl23_0.25-1 libitm1_12.2.0-14ubuntu1 libjansson4_2.14-2 libjbig0_2.1-6ubuntu1 libjpeg-turbo8_2.1.2-0ubuntu1 libjpeg8_8c-2ubuntu10 libjson-c5_0.16-2 libk5crypto3_1.20.1-1build1 libkeyutils1_1.6.3-2 libkmod2_30+20220905-1ubuntu1 libkrb5-3_1.20.1-1build1 libkrb5support0_1.20.1-1build1 liblapack3_3.11.0-2 liblcms2-2_2.14-1build1 liblmdb0_0.9.24-1build2 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblz4-1_1.9.4-1 liblzma5_5.4.1-0.1 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmbedcrypto7_2.28.2-1 libmbedtls14_2.28.2-1 libmbedx509-1_2.28.2-1 libmd0_1.0.4-2 libmount1_2.38.1-4ubuntu1 libmpc3_1.3.1-1 libmpdec3_2.5.1-2build2 libmpfr6_4.2.0-1 libmurmurhash2_1.5-3 libncurses6_6.4-2 libncursesw6_6.4-2 libnettle8_3.8.1-2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libopenjp2-7_2.5.0-1build1 libp11-kit0_0.24.1-2ubuntu1 libpam-modules_1.5.2-5ubuntu1 libpam-modules-bin_1.5.2-5ubuntu1 libpam-runtime_1.5.2-5ubuntu1 libpam0g_1.5.2-5ubuntu1 libpcre2-8-0_10.42-1 libpcre3_2:8.39-15 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libpng16-16_1.6.39-2 libprocps8_2:3.3.17-7ubuntu1 libpython3-stdlib_3.11.1-3 libpython3.10-minimal_3.10.9-1 libpython3.10-stdlib_3.10.9-1 libpython3.11-minimal_3.11.1-2 libpython3.11-stdlib_3.11.1-2 libraqm0_0.7.0-4.1 libreadline8_8.2-1.3 libseccomp2_2.5.4-1ubuntu2 libselinux1_3.4-1build3 libsemanage-common_3.4-1build3 libsemanage2_3.4-1build3 libsepol2_3.4-2 libsmartcols1_2.38.1-4ubuntu1 libsqlite3-0_3.40.1-1 libss2_1.46.6~rc1-1ubuntu1 libssl3_3.0.7-1ubuntu1 libstdc++-12-dev_12.2.0-14ubuntu1 libstdc++6_12.2.0-14ubuntu1 libsub-override-perl_0.09-4 libsystemd-shared_252.4-1ubuntu1 libsystemd0_252.4-1ubuntu1 libtasn1-6_4.19.0-2 libtiff6_4.5.0-4ubuntu1 libtinfo6_6.4-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libubsan1_12.2.0-14ubuntu1 libuchardet0_0.0.7-1build2 libudev1_252.4-1ubuntu1 libunistring2_1.0-2 libuuid1_2.38.1-4ubuntu1 libwebp7_1.2.4-0.1build1 libwebpdemux2_1.2.4-0.1build1 libwebpmux3_1.2.4-0.1build1 libxau6_1:1.0.9-1build5 libxcb1_1.15-1 libxdmcp6_1:1.1.3-0ubuntu5 libxml2_2.9.14+dfsg-1.1build1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg2-3 linux-libc-dev_6.1.0-14.14 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.46.6~rc1-1ubuntu1 lsb-base_11.6 lto-disabled-list_37 m4_1.4.19-3 mailcap_3.70+nmu1ubuntu1 make_4.3-4.1build1 man-db_2.11.2-1 mash_2.3+dfsg-3build1 mawk_1.3.4.20200120-3.1 media-types_9.0.0 mime-support_3.66 mount_2.38.1-4ubuntu1 ncbi-blast+_2.12.0+ds-3build1 ncbi-data_6.1.20170106+dfsg1-10 ncurses-base_6.4-2 ncurses-bin_6.4-2 openssl_3.0.7-1ubuntu1 optipng_0.7.7-2build1 passwd_1:4.13+dfsg1-1ubuntu1 patch_2.7.6-7build2 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 pinentry-curses_1.2.1-1ubuntu1 pkgbinarymangler_151 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-7ubuntu1 python3_3.11.1-3 python3-biopython_1.80+dfsg-4 python3-distutils_3.10.8-1 python3-lib2to3_3.10.8-1 python3-minimal_3.11.1-3 python3-numpy_1:1.24.1-2 python3-pil_9.4.0-1.1build1 python3-pkg-resources_66.1.1-1 python3-renderpm_3.6.12-1 python3-reportlab_3.6.12-1 python3-reportlab-accel_3.6.12-1 python3-setuptools_66.1.1-1 python3.10_3.10.9-1 python3.10-minimal_3.10.9-1 python3.11_3.11.1-2 python3.11-minimal_3.11.1-2 readline-common_8.2-1.3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.17+nmu1 sgml-base_1.31 systemd_252.4-1ubuntu1 systemd-sysv_252.4-1ubuntu1 sysvinit-utils_3.05-7ubuntu2 tar_1.34+dfsg-1.1 tzdata_2022g-2ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_33ubuntu1 util-linux_2.38.1-4ubuntu1 util-linux-extra_2.38.1-4ubuntu1 w3c-sgml-lib_1.3-3 x11-common_1:7.7+23ubuntu2 xfonts-encodings_1:1.0.5-0ubuntu2 xfonts-utils_1:7.7+6build2 xml-core_0.18+nmu1 xz-utils_5.4.1-0.1 zlib1g_1:1.2.13.dfsg-1ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: kleborate Binary: kleborate, kleborate-examples Architecture: any all Version: 2.3.1-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/katholt/Kleborate Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/kleborate Vcs-Git: https://salsa.debian.org/med-team/kleborate.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, ncbi-blast+ , mash , kaptive Package-List: kleborate deb science optional arch=any kleborate-examples deb science optional arch=all Checksums-Sha1: c17b29c844df2a03880d376d0ef2aca16715af57 91335255 kleborate_2.3.1.orig.tar.gz 77ee901ea3fa69bd41b0ec0bb0bb707bde524881 5996008 kleborate_2.3.1-1.debian.tar.xz Checksums-Sha256: 81bd01f9c7db7ca1d6763571eddea616e4970d2420dab6dfa8a9b47aebb8a870 91335255 kleborate_2.3.1.orig.tar.gz 3f530ce060ffe9d8f5fa160c10a6bf274b3bc64697a28f6424b5d5548ec51d4f 5996008 kleborate_2.3.1-1.debian.tar.xz Files: 6d39609923dd9932e0221108fb103481 91335255 kleborate_2.3.1.orig.tar.gz 1c1d0d8466ed1b01b66c96ad03e338c2 5996008 kleborate_2.3.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPgpd8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHK/xAAgYmuVcJaRQGR3UeEZPYo8sb2uaJYzvTo jevvMrpvuBWXd13l/9iF3XKtAW+XxvnRl4/+1FKMAxdy1waRVEyKSiTqA23d6rwZ dnTpxtBd2vRkbYqQkrDex63sGQTUJlz4iKXWqrGWUYSASLaHERCBtqdLMQuZnBj6 oO8M5FbszDDFDWPy7AtMaEBHwhlsqhr/PiBBEax3TFsqc4u7lZuMfJ8u7PPelAi2 4cf6foozLZFplsv6ltgXiZdu8tPv60kDAV/h+KO09wZtjrB2uPxpNT3YgLxyHcoz 5gBXrbnReoP8gCiqPuTFEQ1tmU4k72yWB0ZKkkjHdRNvu9zb7KfpUuj1EhOMD8SN ENImpyiXym92xIeAkG93MWmeP9zdZI2kNr4/EC9LFJiGzvhlctpvcfchqlRfg+ZC GP2AZC1hdlZ4H5NTwsGymgYvqBNvJja3HjNGfYbljAYOm29g9JWupbLKfeIuCJoA NcvM7pFR5sdHyTICnZmEIXBMhRIPok3iis1lr1jcUj5/BvZLgNdvZmQsYbJ7jO2p K84ju8YcLeTwpKaYIx/Tjgq9N4JGsbjjlqVwX8PvqIhzrUE/ny+zrcOOYWHo5XUX 0ntZBjCty8gqHz4Cr2xDLtt+pSlbNtUG/B3JnMDtwq8YaVgSQKGRYQdFcMjCajtS Q4+q/9dpbjA= =S2nT -----END PGP SIGNATURE----- gpgv: Signature made Mon Feb 6 07:01:51 2023 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./kleborate_2.3.1-1.dsc: no acceptable signature found dpkg-source: info: extracting kleborate in /<> dpkg-source: info: unpacking kleborate_2.3.1.orig.tar.gz dpkg-source: info: unpacking kleborate_2.3.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3.patch dpkg-source: info: applying use_debian_installed_kaptive.patch dpkg-source: info: applying bigendian.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-25560814 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-25560814 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-25560814 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package kleborate dpkg-buildpackage: info: source version 2.3.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-s390x' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/truncation.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/species.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/mlstBLAST.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/misc.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/__main__.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/__init__.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/resBLAST.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/version.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/rmpA.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/shv_mutations.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/help_formatter.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/kaptive.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/contig_stats.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/blastn.py -> /<>/.pybuild/cpython3_3.11/build/kleborate running egg_info creating Kleborate.egg-info writing Kleborate.egg-info/PKG-INFO writing dependency_links to Kleborate.egg-info/dependency_links.txt writing entry points to Kleborate.egg-info/entry_points.txt writing requirements to Kleborate.egg-info/requires.txt writing top-level names to Kleborate.egg-info/top_level.txt writing manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'kleborate/ICEKp_references' warning: no directories found matching 'kaptive/reference_database' warning: no directories found matching 'kaptive/sample_data' adding license file 'LICENSE' writing manifest file 'Kleborate.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'kleborate.data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'kleborate.data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'kleborate.data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'kleborate.data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'kleborate.data.ICEKp_references' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'kleborate.data.ICEKp_references' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'kleborate.data.ICEKp_references' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'kleborate.data.ICEKp_references' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) creating /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/AbST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/CARD_AMR_clustered.csv -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/CARD_v3.1.13.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/CbST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/Klebsiella_pneumoniae.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/MgrB_and_PmrB.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/OmpK.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/QRDR_120.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/RmST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/SmST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/YbST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/clb_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/iro_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/iuc_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/kpneumoniae.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/rmpA2.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/rmp_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/species_mash_sketches.msh -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/wzi.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/wzi.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/ybt_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data creating /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp1.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp10.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp11.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp12.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp13.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp14.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp15.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp16.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp17.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp18.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp19.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp2.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp20.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp21.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp22.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp3.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp4.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp5.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp6.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp7.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp8.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp9.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references dh_auto_test -a -O--buildsystem=pybuild I: pybuild base:240: cd /<>/.pybuild/cpython3_3.11/build; python3.11 -m unittest discover -v /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. warnings.warn( test_ambiguous_bases_1 (test.test_contig_stats.TestContigStats.test_ambiguous_bases_1) ... ok test_ambiguous_bases_2 (test.test_contig_stats.TestContigStats.test_ambiguous_bases_2) ... ok test_ambiguous_bases_3 (test.test_contig_stats.TestContigStats.test_ambiguous_bases_3) ... ok test_ambiguous_bases_4 (test.test_contig_stats.TestContigStats.test_ambiguous_bases_4) ... ok test_count_1 (test.test_contig_stats.TestContigStats.test_count_1) ... ok test_count_2 (test.test_contig_stats.TestContigStats.test_count_2) ... ok test_longest_1 (test.test_contig_stats.TestContigStats.test_longest_1) ... ok test_longest_2 (test.test_contig_stats.TestContigStats.test_longest_2) ... ok test_n50_1 (test.test_contig_stats.TestContigStats.test_n50_1) ... ok test_n50_2 (test.test_contig_stats.TestContigStats.test_n50_2) ... ok test_qc_warnings_1 (test.test_contig_stats.TestContigStats.test_qc_warnings_1) ... ok test_qc_warnings_2 (test.test_contig_stats.TestContigStats.test_qc_warnings_2) ... ok test_qc_warnings_3 (test.test_contig_stats.TestContigStats.test_qc_warnings_3) ... ok test_qc_warnings_4 (test.test_contig_stats.TestContigStats.test_qc_warnings_4) ... ok test_qc_warnings_5 (test.test_contig_stats.TestContigStats.test_qc_warnings_5) ... ok test_qc_warnings_6 (test.test_contig_stats.TestContigStats.test_qc_warnings_6) ... ok test_qc_warnings_7 (test.test_contig_stats.TestContigStats.test_qc_warnings_7) ... ok test_qc_warnings_8 (test.test_contig_stats.TestContigStats.test_qc_warnings_8) ... ok test_total_size_1 (test.test_contig_stats.TestContigStats.test_total_size_1) ... ok test_total_size_2 (test.test_contig_stats.TestContigStats.test_total_size_2) ... ok test_total_size_3 (test.test_contig_stats.TestContigStats.test_total_size_3) ... ok test_total_size_4 (test.test_contig_stats.TestContigStats.test_total_size_4) ... ok test_iro_exact_1 (test.test_iro.TestIro.test_iro_exact_1) This test is an exact match for SmST1. ... ok test_iro_exact_33 (test.test_iro.TestIro.test_iro_exact_33) This test is an exact match for SmST33. ... ok test_iro_incomplete (test.test_iro.TestIro.test_iro_incomplete) This test is an exact match for only one allele. ... ok test_iro_inexact (test.test_iro.TestIro.test_iro_inexact) This test is an inexact match for SmST33. There are single base changes in iroC and in ... ok test_iro_missing_1 (test.test_iro.TestIro.test_iro_missing_1) This test is a match for SmST1, except that it's missing iroN. ... ok test_iro_novel (test.test_iro.TestIro.test_iro_novel) This test is an exact match for alleles, but an unknown combination. ... ok test_iro_random (test.test_iro.TestIro.test_iro_random) This test has just random sequence and should give no iro call. ... ok test_confidence_meets_threshold_01 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_01) ... ok test_confidence_meets_threshold_02 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_02) ... ok test_confidence_meets_threshold_03 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_03) ... ok test_confidence_meets_threshold_04 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_04) ... ok test_confidence_meets_threshold_05 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_05) ... ok test_confidence_meets_threshold_06 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_06) ... ok test_confidence_meets_threshold_07 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_07) ... ok test_confidence_meets_threshold_08 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_08) ... ok test_confidence_meets_threshold_09 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_09) ... ok test_confidence_meets_threshold_10 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_10) ... ok test_134 (test.test_mlst.TestMlst.test_134) ... ok test_83 (test.test_mlst.TestMlst.test_83) ... ok test_ba779 (test.test_mlst.TestMlst.test_ba779) ... ok test_chromosome_exact (test.test_mlst.TestMlst.test_chromosome_exact) This test is an exact match for ST23. ... ok test_chromosome_inexact (test.test_mlst.TestMlst.test_chromosome_inexact) This test is is one base off from ST23 (single substitution in mdh_1 of G to A). ... ok test_chromosome_random (test.test_mlst.TestMlst.test_chromosome_random) This test has just random sequence and should give no MLST call. ... ok test_kp_subspecies_1 (test.test_mlst.TestMlst.test_kp_subspecies_1) ... ok test_kp_subspecies_2 (test.test_mlst.TestMlst.test_kp_subspecies_2) ... ok test_kp_subspecies_3 (test.test_mlst.TestMlst.test_kp_subspecies_3) ... ok test_kp_subspecies_4 (test.test_mlst.TestMlst.test_kp_subspecies_4) ... ok test_kp_subspecies_5 (test.test_mlst.TestMlst.test_kp_subspecies_5) ... ok test_kp_subspecies_6 (test.test_mlst.TestMlst.test_kp_subspecies_6) ... ok test_kp_subspecies_7 (test.test_mlst.TestMlst.test_kp_subspecies_7) ... ok test_ozaenae (test.test_mlst.TestMlst.test_ozaenae) ... ok test_rhinoscleromatis (test.test_mlst.TestMlst.test_rhinoscleromatis) ... ok test_unknown_ST (test.test_mlst.TestMlst.test_unknown_ST) This test has exact matches for alleles but in an unknown ST combination ... ok test_res_01 (test.test_res_aac.TestResAac.test_res_01) ... /usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/__init__.py:519: ResourceWarning: unclosed file <_io.TextIOWrapper name='/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM62' mode='r' encoding='utf-8'> matrix = read(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_res_02 (test.test_res_aac.TestResAac.test_res_02) ... ok test_res_03 (test.test_res_aac.TestResAac.test_res_03) ... ok test_res_04 (test.test_res_aac.TestResAac.test_res_04) This is a tricky one (and the one which first highlighted the problem). The best bit-score ... ok test_res_05 (test.test_res_aac.TestResAac.test_res_05) Same as test_res_04, but with the hit on the other strand. ... ok test_exact_aa_match_1 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_1) Simple case: full protein sequence ending in a stop codon. ... ok test_exact_aa_match_2 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_2) These two seqs have a stop codon in the middle but still match exactly. ... ok test_exact_aa_match_3 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_3) These two seqs have a stop codon in the middle and mismatch after the stop. ... ok test_exact_aa_match_4 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_4) These two seqs have a stop codon in the middle and mismatch after the stop. ... ok test_exact_aa_match_5 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_5) These two seqs are non-multiple-of-three in length and match in their remainder. ... ok test_exact_aa_match_6 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_6) These two seqs are non-multiple-of-three in length and match in their remainder. ... ok test_exact_aa_match_7 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_7) These two seqs are non-multiple-of-three in length and don't match in their remainder. ... ok test_exact_aa_match_8 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_8) The first seq's protein sequence contains the second seq's protein sequence. ... ok test_res_01 (test.test_res_alleles.TestResAlleles.test_res_01) ... ok test_res_02 (test.test_res_alleles.TestResAlleles.test_res_02) ... ok test_res_03 (test.test_res_alleles.TestResAlleles.test_res_03) ... ok test_res_04 (test.test_res_alleles.TestResAlleles.test_res_04) ... ok test_res_05 (test.test_res_alleles.TestResAlleles.test_res_05) ... ok test_res_06 (test.test_res_alleles.TestResAlleles.test_res_06) ... ok test_res_07 (test.test_res_alleles.TestResAlleles.test_res_07) ... ok test_res_08 (test.test_res_alleles.TestResAlleles.test_res_08) ... ok test_res_09 (test.test_res_alleles.TestResAlleles.test_res_09) ... ok test_res_10 (test.test_res_alleles.TestResAlleles.test_res_10) ... ok test_res_11 (test.test_res_alleles.TestResAlleles.test_res_11) This test has the ABC-1 gene but with a stop codon in the middle. ... ok test_res_12 (test.test_res_alleles.TestResAlleles.test_res_12) This test has the ABC-1 gene but missing the first (start) codon. ... ok test_res_13 (test.test_res_alleles.TestResAlleles.test_res_13) This test has the ABC-1 gene but at only 50% coverage, so it goes to spurious hits. ... ok test_res_14 (test.test_res_alleles.TestResAlleles.test_res_14) I added this test to catch a weird BLAST-related bug where an exact amino acid match for ... ok test_res_15 (test.test_res_alleles.TestResAlleles.test_res_15) Same as the previous test, but with the nucleotide sequence reverse-complemented. ... ok test_res_16 (test.test_res_alleles.TestResAlleles.test_res_16) I added this test to catch a weird BLAST-related bug where an exact amino acid match for ... ok test_res_17 (test.test_res_alleles.TestResAlleles.test_res_17) Same as the previous test, but with the nucleotide sequence reverse-complemented. ... ok test_res_18 (test.test_res_alleles.TestResAlleles.test_res_18) This is the uncomplicated case for a OKP-B-6^ result (later tests cover more challenging ... ok test_res_19 (test.test_res_alleles.TestResAlleles.test_res_19) Same as the previous test, but with the nucleotide sequence reverse-complemented. ... ok test_res_20 (test.test_res_alleles.TestResAlleles.test_res_20) I added this test to catch a bug where there is an exact amino acid match but inexact ... ok test_res_21 (test.test_res_alleles.TestResAlleles.test_res_21) Same as the previous test, but with the nucleotide sequence reverse-complemented. ... ok test_res_22 (test.test_res_alleles.TestResAlleles.test_res_22) I added this test to catch a bug where there is an exact amino acid match but inexact ... ok test_res_23 (test.test_res_alleles.TestResAlleles.test_res_23) Same as the previous test, but with the nucleotide sequence reverse-complemented. ... ok test_both_genes_intact (test.test_res_mgrb_pmrb.TestResMgrBPmrB.test_both_genes_intact) ... ok test_mgrb_missing (test.test_res_mgrb_pmrb.TestResMgrBPmrB.test_mgrb_missing) ... ok test_mgrb_missing_non_kp_complex (test.test_res_mgrb_pmrb.TestResMgrBPmrB.test_mgrb_missing_non_kp_complex) Setting the Kp complex variable to False should turn off the MgrB/PmrB tests. ... ok test_pmrb_early_stop (test.test_res_mgrb_pmrb.TestResMgrBPmrB.test_pmrb_early_stop) This tests an early stop mutation (without a frameshift) in pmrB. ... ok test_pmrb_early_stop_SRR2098701 (test.test_res_mgrb_pmrb.TestResMgrBPmrB.test_pmrb_early_stop_SRR2098701) ... ok test_pmrb_frameshift (test.test_res_mgrb_pmrb.TestResMgrBPmrB.test_pmrb_frameshift) A frameshift in pmrB should cause an early stop and lead to a colisitin resistance call. ... ok test_both_genes_intact (test.test_res_omp.TestResOmp.test_both_genes_intact) ... ok test_ompk35_early_stop (test.test_res_omp.TestResOmp.test_ompk35_early_stop) This tests an early stop mutation (without a frameshift) in OmpK35. ... ok test_ompk35_frameshift (test.test_res_omp.TestResOmp.test_ompk35_frameshift) A frameshift in OmpK35 should cause an early stop and lead to a carbapenem resistance call. ... ok test_ompk36_missing (test.test_res_omp.TestResOmp.test_ompk36_missing) ... ok test_ompk36gd (test.test_res_omp.TestResOmp.test_ompk36gd) ... ok test_ompk36td (test.test_res_omp.TestResOmp.test_ompk36td) ... ok test_ompk36td_non_kp_complex (test.test_res_omp.TestResOmp.test_ompk36td_non_kp_complex) Setting the Kp complex variable to False should turn off the OmpK tests. ... ok test_gyra (test.test_res_qrdr.TestResGyrAParC.test_gyra) ... ok test_gyra_and_parc (test.test_res_qrdr.TestResGyrAParC.test_gyra_and_parc) ... ok test_gyra_and_parc_non_kp_complex (test.test_res_qrdr.TestResGyrAParC.test_gyra_and_parc_non_kp_complex) Setting the Kp complex variable to False should turn off the QRDR tests. ... ok test_no_mutations (test.test_res_qrdr.TestResGyrAParC.test_no_mutations) ... ok test_parc (test.test_res_qrdr.TestResGyrAParC.test_parc) ... ok test_tem (test.test_res_tem.TestResTem.test_tem) ... ok test_rmp_19 (test.test_rmp.TestRmp.test_rmp_19) This test is an exact match for RmST19, an ST without any truncated alleles. ... ok test_rmp_21 (test.test_rmp.TestRmp.test_rmp_21) This test is an exact match for RmST21, an ST with a truncated allele. ... ok test_rmp_missing_1 (test.test_rmp.TestRmp.test_rmp_missing_1) This test is a match for RmST1, except that it's missing rmpC. ... ok test_rmp_novel (test.test_rmp.TestRmp.test_rmp_novel) This test is an exact match for alleles, but an unknown combination. ... ok test_rmp_random (test.test_rmp.TestRmp.test_rmp_random) This test has just random sequence and should give no rmp call. ... ok test_rmpa2_exact (test.test_rmp.TestRmp.test_rmpa2_exact) This test has an exact match for rmpA2_1. ... ok test_rmpa2_exact_truncated (test.test_rmp.TestRmp.test_rmpa2_exact_truncated) This test has an exact match for rmpA2_7. ... ok test_rmpa2_inexact (test.test_rmp.TestRmp.test_rmpa2_inexact) This test has an inexact match for rmpA2_1. ... ok test_rmpa2_random (test.test_rmp.TestRmp.test_rmpa2_random) This test has just random sequence and should give no rmpA2 call. ... ok test_bla_class_01 (test.test_shv.TestShvMutations.test_bla_class_01) ... ok test_bla_class_02 (test.test_shv.TestShvMutations.test_bla_class_02) ... ok test_bla_class_03 (test.test_shv.TestShvMutations.test_bla_class_03) ... ok test_bla_class_04 (test.test_shv.TestShvMutations.test_bla_class_04) ... ok test_get_class_changing_mutations_01 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_01) ... ok test_get_class_changing_mutations_02 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_02) ... ok test_get_class_changing_mutations_03 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_03) ... ok test_get_class_changing_mutations_04 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_04) ... ok test_get_class_changing_mutations_05 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_05) ... ok test_get_class_changing_mutations_06 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_06) ... ok test_get_class_changing_mutations_07 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_07) ... ok test_get_class_changing_mutations_08 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_08) ... ok test_shv_01 (test.test_shv.TestShvMutations.test_shv_01) This test has an exact match for SHV-1. ... ok test_shv_02 (test.test_shv.TestShvMutations.test_shv_02) This test has a match for SHV-1 with a mutation at site 238 (G -> Y). This changes the ... ok test_shv_03 (test.test_shv.TestShvMutations.test_shv_03) Same as test 2, but the gene is on the reverse strand. ... ok test_shv_04 (test.test_shv.TestShvMutations.test_shv_04) This test has a match for SHV-1 with a mutation at site 50 (G -> Y). This doesn't change ... ok test_shv_05 (test.test_shv.TestShvMutations.test_shv_05) This test has an exact match for SHV-29. ... ok test_shv_06 (test.test_shv.TestShvMutations.test_shv_06) This test has SHV-29 plus an inhibition mutation. ... ok test_shv_07 (test.test_shv.TestShvMutations.test_shv_07) This test has SHV-1 with position 238 deleted. Since it's not in the omega loop, this isn't ... ok test_shv_08 (test.test_shv.TestShvMutations.test_shv_08) This test has SHV-1 with a synonymous mutation in the omega loop (so not reported). ... ok test_shv_09 (test.test_shv.TestShvMutations.test_shv_09) This test has SHV-1 with a nonsynonymous mutation in the omega loop (so it is reported). ... ok test_citrobacter (test.test_species.TestKpComplex.test_citrobacter) ... ok test_klebsiella_aerogenes (test.test_species.TestKpComplex.test_klebsiella_aerogenes) ... ok test_klebsiella_africanensis (test.test_species.TestKpComplex.test_klebsiella_africanensis) ... ok test_klebsiella_grimontii (test.test_species.TestKpComplex.test_klebsiella_grimontii) ... ok test_klebsiella_michiganensis (test.test_species.TestKpComplex.test_klebsiella_michiganensis) ... ok test_klebsiella_oxytoca (test.test_species.TestKpComplex.test_klebsiella_oxytoca) ... ok test_klebsiella_pneumoniae (test.test_species.TestKpComplex.test_klebsiella_pneumoniae) ... ok test_klebsiella_quasipneumoniae_subsp_quasipneumoniae (test.test_species.TestKpComplex.test_klebsiella_quasipneumoniae_subsp_quasipneumoniae) ... ok test_klebsiella_quasipneumoniae_subsp_similipneumoniae (test.test_species.TestKpComplex.test_klebsiella_quasipneumoniae_subsp_similipneumoniae) ... ok test_klebsiella_quasivariicola (test.test_species.TestKpComplex.test_klebsiella_quasivariicola) ... ok test_klebsiella_variicola_subsp_tropicalensis (test.test_species.TestKpComplex.test_klebsiella_variicola_subsp_tropicalensis) ... ok test_klebsiella_variicola_subsp_variicola (test.test_species.TestKpComplex.test_klebsiella_variicola_subsp_variicola) ... ok test_raoultella_ornithinolytica (test.test_species.TestKpComplex.test_raoultella_ornithinolytica) ... ok test_raoultella_planticola (test.test_species.TestKpComplex.test_raoultella_planticola) ... ok test_raoultella_terrigena (test.test_species.TestKpComplex.test_raoultella_terrigena) ... ok test_salmonella (test.test_species.TestKpComplex.test_salmonella) ... ok test_citrobacter (test.test_species.TestSpecies.test_citrobacter) ... ok test_klebsiella_aerogenes (test.test_species.TestSpecies.test_klebsiella_aerogenes) ... ok test_klebsiella_africana (test.test_species.TestSpecies.test_klebsiella_africana) ... ok test_klebsiella_grimontii (test.test_species.TestSpecies.test_klebsiella_grimontii) ... ok test_klebsiella_indica (test.test_species.TestSpecies.test_klebsiella_indica) ... ok test_klebsiella_michiganensis (test.test_species.TestSpecies.test_klebsiella_michiganensis) ... ok test_klebsiella_oxytoca (test.test_species.TestSpecies.test_klebsiella_oxytoca) ... ok test_klebsiella_pasteurii (test.test_species.TestSpecies.test_klebsiella_pasteurii) ... ok test_klebsiella_pneumoniae (test.test_species.TestSpecies.test_klebsiella_pneumoniae) ... ok test_klebsiella_quasipneumoniae_subsp_quasipneumoniae (test.test_species.TestSpecies.test_klebsiella_quasipneumoniae_subsp_quasipneumoniae) ... ok test_klebsiella_quasipneumoniae_subsp_similipneumoniae (test.test_species.TestSpecies.test_klebsiella_quasipneumoniae_subsp_similipneumoniae) ... ok test_klebsiella_quasivariicola (test.test_species.TestSpecies.test_klebsiella_quasivariicola) ... ok test_klebsiella_spallanzanii (test.test_species.TestSpecies.test_klebsiella_spallanzanii) ... ok test_klebsiella_variicola_subsp_tropicalensis (test.test_species.TestSpecies.test_klebsiella_variicola_subsp_tropicalensis) ... ok test_klebsiella_variicola_subsp_variicola (test.test_species.TestSpecies.test_klebsiella_variicola_subsp_variicola) ... ok test_raoultella_ornithinolytica (test.test_species.TestSpecies.test_raoultella_ornithinolytica) ... ok test_raoultella_planticola (test.test_species.TestSpecies.test_raoultella_planticola) ... ok test_raoultella_terrigena (test.test_species.TestSpecies.test_raoultella_terrigena) ... ok test_salmonella (test.test_species.TestSpecies.test_salmonella) ... ok test_yersinia_unknown (test.test_species.TestSpecies.test_yersinia_unknown) ... ok test_nothing (test.test_summary.TestResScore.test_nothing) ... ok test_res_counts_1 (test.test_summary.TestResScore.test_res_counts_1) ... ok test_res_counts_10 (test.test_summary.TestResScore.test_res_counts_10) Resistance-by-truncation should add to the class count but not to the gene count (because ... ok test_res_counts_11 (test.test_summary.TestResScore.test_res_counts_11) Spurious hits should not add to either the gene or class counts. ... ok test_res_counts_2 (test.test_summary.TestResScore.test_res_counts_2) ... ok test_res_counts_3 (test.test_summary.TestResScore.test_res_counts_3) Intrinsic Bla genes should not add to the counts. ... ok test_res_counts_4 (test.test_summary.TestResScore.test_res_counts_4) Bla genes in columns other than 'Bla_chr' (e.g. 'Bla_ESBL_acquired') should add to the ... ok test_res_counts_5 (test.test_summary.TestResScore.test_res_counts_5) Bla genes in columns other than 'Bla_chr' (e.g. 'Bla_acquired') should add to the counts. ... ok test_res_counts_6 (test.test_summary.TestResScore.test_res_counts_6) Omp gene truncations should not add to the gene or class counts. ... ok test_res_counts_7 (test.test_summary.TestResScore.test_res_counts_7) Mutations should add to the class count but not to the gene count (because that is for ... ok test_res_counts_8 (test.test_summary.TestResScore.test_res_counts_8) Mutations should add to the class count but not to the gene count (because that is for ... ok test_res_counts_9 (test.test_summary.TestResScore.test_res_counts_9) Mutations should add to the class count but not to the gene count (because that is for ... ok test_res_score_1 (test.test_summary.TestResScore.test_res_score_1) ... ok test_res_score_2 (test.test_summary.TestResScore.test_res_score_2) ... ok test_res_score_3 (test.test_summary.TestResScore.test_res_score_3) ... ok test_res_score_4 (test.test_summary.TestResScore.test_res_score_4) ... ok test_res_score_5 (test.test_summary.TestResScore.test_res_score_5) ... ok test_res_score_6 (test.test_summary.TestResScore.test_res_score_6) ... ok test_res_score_7 (test.test_summary.TestResScore.test_res_score_7) ... ok test_res_score_8 (test.test_summary.TestResScore.test_res_score_8) ... ok test_vir_score_1 (test.test_summary.TestResScore.test_vir_score_1) ... ok test_vir_score_2 (test.test_summary.TestResScore.test_vir_score_2) ... ok test_vir_score_3 (test.test_summary.TestResScore.test_vir_score_3) ... ok test_vir_score_4 (test.test_summary.TestResScore.test_vir_score_4) ... ok test_vir_score_5 (test.test_summary.TestResScore.test_vir_score_5) ... ok test_vir_score_6 (test.test_summary.TestResScore.test_vir_score_6) ... ok test_vir_score_7 (test.test_summary.TestResScore.test_vir_score_7) ... ok ---------------------------------------------------------------------- Ran 203 tests in 45.948s OK {'Sul_acquired': 'sul2^', 'Tet_acquired': '-', 'Bla_acquired': '-', 'Bla_inhR_acquired': '-', 'Bla_ESBL_acquired': '-', 'Bla_ESBL_inhR_acquired': '-', 'Bla_Carb_acquired': '-', 'Bla_chr': '-', 'SHV_mutations': '-', 'Omp_mutations': 'OmpK35-0%;OmpK36-0%', 'Col_mutations': 'MgrB-0%;PmrB-0%', 'Flq_mutations': '-', 'truncated_resistance_hits': '-', 'spurious_resistance_hits': '-'} {'Sul_acquired': '-', 'Tet_acquired': '-', 'Bla_acquired': '-', 'Bla_inhR_acquired': '-', 'Bla_ESBL_acquired': '-', 'Bla_ESBL_inhR_acquired': '-', 'Bla_Carb_acquired': '-', 'Bla_chr': 'OKP-B-6^', 'SHV_mutations': '-', 'Omp_mutations': 'OmpK35-0%;OmpK36-0%', 'Col_mutations': 'MgrB-0%;PmrB-0%', 'Flq_mutations': '-', 'truncated_resistance_hits': '-', 'spurious_resistance_hits': '-'} {'Sul_acquired': '-', 'Tet_acquired': '-', 'Bla_acquired': '-', 'Bla_inhR_acquired': '-', 'Bla_ESBL_acquired': '-', 'Bla_ESBL_inhR_acquired': '-', 'Bla_Carb_acquired': '-', 'Bla_chr': 'OKP-B-6^', 'SHV_mutations': '-', 'Omp_mutations': 'OmpK35-0%;OmpK36-0%', 'Col_mutations': 'MgrB-0%;PmrB-0%', 'Flq_mutations': '-', 'truncated_resistance_hits': '-', 'spurious_resistance_hits': '-'} {'Sul_acquired': '-', 'Tet_acquired': '-', 'Bla_acquired': '-', 'Bla_inhR_acquired': '-', 'Bla_ESBL_acquired': '-', 'Bla_ESBL_inhR_acquired': '-', 'Bla_Carb_acquired': '-', 'Bla_chr': 'OKP-B-6^', 'SHV_mutations': '-', 'Omp_mutations': 'OmpK35-0%;OmpK36-0%', 'Col_mutations': 'MgrB-0%;PmrB-0%', 'Flq_mutations': '-', 'truncated_resistance_hits': '-', 'spurious_resistance_hits': '-'} create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /<>/debian/tmp running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing Kleborate.egg-info/PKG-INFO writing dependency_links to Kleborate.egg-info/dependency_links.txt writing entry points to Kleborate.egg-info/entry_points.txt writing requirements to Kleborate.egg-info/requires.txt writing top-level names to Kleborate.egg-info/top_level.txt reading manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'kleborate/ICEKp_references' warning: no directories found matching 'kaptive/reference_database' warning: no directories found matching 'kaptive/sample_data' adding license file 'LICENSE' writing manifest file 'Kleborate.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'kleborate.data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'kleborate.data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'kleborate.data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'kleborate.data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'kleborate.data.ICEKp_references' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'kleborate.data.ICEKp_references' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'kleborate.data.ICEKp_references' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'kleborate.data.ICEKp_references' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running install_lib creating /<>/debian/tmp/usr creating /<>/debian/tmp/usr/lib creating /<>/debian/tmp/usr/lib/python3.11 creating /<>/debian/tmp/usr/lib/python3.11/dist-packages creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/truncation.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/species.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/CARD_v3.1.13.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/species_mash_sketches.msh -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/clb_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/rmp_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/AbST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/wzi.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/iuc_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/iro_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ybt_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp10.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp6.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp21.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp9.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp22.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp16.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp2.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp20.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp5.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp8.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp4.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp18.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp13.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp3.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp17.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp14.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp1.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp7.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp11.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp12.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp15.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp19.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/CARD_AMR_clustered.csv -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/rmpA2.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/QRDR_120.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/RmST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/SmST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/kpneumoniae.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/MgrB_and_PmrB.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/CbST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/YbST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/OmpK.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/wzi.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/Klebsiella_pneumoniae.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/mlstBLAST.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/misc.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/__main__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/resBLAST.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/version.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/rmpA.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/shv_mutations.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/help_formatter.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/contig_stats.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/kaptive.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/rmpA.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/__main__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/species.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/help_formatter.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/resBLAST.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/blastn.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/shv_mutations.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/truncation.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/mlstBLAST.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/version.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/misc.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/kaptive.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/contig_stats.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/blastn.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/truncation.py to truncation.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/species.py to species.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/mlstBLAST.py to mlstBLAST.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/misc.py to misc.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__main__.py to __main__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/resBLAST.py to resBLAST.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/version.py to version.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/rmpA.py to rmpA.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/shv_mutations.py to shv_mutations.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/help_formatter.py to help_formatter.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/kaptive.py to kaptive.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/contig_stats.py to contig_stats.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/blastn.py to blastn.cpython-311.pyc running install_egg_info Copying Kleborate.egg-info to /<>/debian/tmp/usr/lib/python3.11/dist-packages/Kleborate-2.2.0.egg-info Skipping SOURCES.txt running install_scripts Installing kleborate script to /<>/debian/tmp/usr/bin Building BLAST databases with makeblastdb: makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/CARD_v3.1.13.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/clb_alleles.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/rmpA2.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/iro_alleles.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/iuc_alleles.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/rmp_alleles.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/wzi.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ybt_alleles.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/MgrB_and_PmrB.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/OmpK.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/QRDR_120.fasta -blastdb_version 4  _ __ _ ______ ____ ____ _____ _______ ______ | | / /| | | ____| _ \ / __ \| __ \ /\|__ __| ____| | |/ / | | | |__ | |_) | | | | |__) | / \ | | | |__ | < | | | __| | _ <| | | | _ / / /\ \ | | | __| | |\ \ | |___| |____| |_) | |__| | | \ \/ ____ \| | | |____ |_| \_\|_____|______|____/ \____/|_| \_\/ \_\_| |______|  Kleborate is installed and ready to use! Example commands: kleborate --help kleborate -o results.txt -a *.fasta kleborate --resistance -o results.txt -a *.fasta kleborate --all -o results.txt -a *.fasta debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install # fasta.nin files will be (re)build at package installation time to not contain build path find debian -name "*.fasta.nin" -delete make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -name "*.msh" -exec chmod -x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 151 pkgstriptranslations: processing kleborate (in debian/kleborate); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/kleborate/DEBIAN/control, package kleborate, directory debian/kleborate pkgstripfiles: Truncating usr/share/doc/kleborate/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package kleborate ... pkgstripfiles: No PNG files. dpkg-deb: building package 'kleborate' in '../kleborate_2.3.1-1_s390x.deb'. dpkg-genbuildinfo --build=any -O../kleborate_2.3.1-1_s390x.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../kleborate_2.3.1-1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-02-06T17:45:29Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kleborate_2.3.1-1_s390x.changes: -------------------------------- Format: 1.8 Date: Mon, 06 Feb 2023 07:37:51 +0100 Source: kleborate Binary: kleborate Built-For-Profiles: noudeb Architecture: s390x Version: 2.3.1-1 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: kleborate - tool to screen Klebsiella genome assemblies Changes: kleborate (2.3.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: a90302a9c0a92e96afe168902005f3ce2105e523 7632 kleborate_2.3.1-1_s390x.buildinfo a795976aa8d4b9d12820de33c4a4c37c1064ea09 8722196 kleborate_2.3.1-1_s390x.deb Checksums-Sha256: 95ff453c2363b02fd06568b95d3da1d595d9f24098dce78f3e4dcd22f7d840a0 7632 kleborate_2.3.1-1_s390x.buildinfo a72b84aab9265e6d4b27fe8771557a6689d13b874cf64eb9ad06634b92272e76 8722196 kleborate_2.3.1-1_s390x.deb Files: dce3d82336dc4fcf526d70bc320c3c00 7632 science optional kleborate_2.3.1-1_s390x.buildinfo e30da89b9a4aaac55b110a621eb0eb6d 8722196 science optional kleborate_2.3.1-1_s390x.deb /<>/kleborate_2.3.1-1_s390x.changes.new could not be renamed to /<>/kleborate_2.3.1-1_s390x.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: kleborate Binary: kleborate Architecture: s390x Version: 2.3.1-1 Checksums-Md5: e30da89b9a4aaac55b110a621eb0eb6d 8722196 kleborate_2.3.1-1_s390x.deb Checksums-Sha1: a795976aa8d4b9d12820de33c4a4c37c1064ea09 8722196 kleborate_2.3.1-1_s390x.deb Checksums-Sha256: a72b84aab9265e6d4b27fe8771557a6689d13b874cf64eb9ad06634b92272e76 8722196 kleborate_2.3.1-1_s390x.deb Build-Origin: Ubuntu Build-Architecture: s390x Build-Date: Mon, 06 Feb 2023 17:45:28 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-11), autotools-dev (= 20220109.1), base-files (= 12.3ubuntu1), base-passwd (= 3.6.1), bash (= 5.2.15-2ubuntu1), binutils (= 2.40-2ubuntu1), binutils-common (= 2.40-2ubuntu1), binutils-s390x-linux-gnu (= 2.40-2ubuntu1), bsdextrautils (= 2.38.1-4ubuntu1), bsdutils (= 1:2.38.1-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 9.1-1ubuntu2), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-14ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-9ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.4ubuntu3), debianutils (= 5.7-0.4), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-python (= 5.20230130), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.19ubuntu3), dpkg-dev (= 1.21.19ubuntu3), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-3ubuntu1), fonts-urw-base35 (= 20200910-7), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-14ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-14ubuntu1), gcc-12-base (= 12.2.0-14ubuntu1), gettext (= 0.21-11), gettext-base (= 0.21-11), grep (= 3.8-5), groff-base (= 1.22.4-9), gzip (= 1.12-1ubuntu1), hostname (= 3.23ubuntu2), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), kaptive (= 2.0.4-1), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 12.2.0-14ubuntu1), libatomic1 (= 12.2.0-14ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.0.7-1.1), libaudit1 (= 1:3.0.7-1.1), libbinutils (= 2.40-2ubuntu1), libblas3 (= 3.11.0-2), libblkid1 (= 2.38.1-4ubuntu1), libbrotli1 (= 1.0.9-2build7), libbsd0 (= 0.11.7-2), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.37-0ubuntu1), libc-dev-bin (= 2.37-0ubuntu1), libc6 (= 2.37-0ubuntu1), libc6-dev (= 2.37-0ubuntu1), libcap-ng0 (= 0.8.3-1build1), libcap2 (= 1:2.66-3ubuntu1), libcapnp-0.9.2 (= 0.9.2-2), libcc1-0 (= 12.2.0-14ubuntu1), libcom-err2 (= 1.46.6~rc1-1ubuntu1), libcrypt-dev (= 1:4.4.33-2), libcrypt1 (= 1:4.4.33-2), libctf-nobfd0 (= 2.40-2ubuntu1), libctf0 (= 2.40-2ubuntu1), libdb5.3 (= 5.3.28+dfsg2-1), libdebconfclient0 (= 0.264ubuntu1), libdebhelper-perl (= 13.11.4ubuntu3), libdeflate0 (= 1.14-1), libdpkg-perl (= 1.21.19ubuntu3), libdw1 (= 0.188-2.1), libelf1 (= 0.188-2.1), libexpat1 (= 2.5.0-1), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libfontenc1 (= 1:1.1.4-1build3), libfreetype6 (= 2.12.1+dfsg-4), libfribidi0 (= 1.0.8-2.1ubuntu1), libgcc-12-dev (= 12.2.0-14ubuntu1), libgcc-s1 (= 12.2.0-14ubuntu1), libgcrypt20 (= 1.10.1-3ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgfortran5 (= 12.2.0-14ubuntu1), libglib2.0-0 (= 2.74.5-1), libgmp10 (= 2:6.2.1+dfsg1-1.1ubuntu1), libgomp1 (= 12.2.0-14ubuntu1), libgpg-error0 (= 1.46-1), libgraphite2-3 (= 1.3.14-1build2), libgsl27 (= 2.7.1+dfsg-3), libgslcblas0 (= 2.7.1+dfsg-3), libgssapi-krb5-2 (= 1.20.1-1build1), libharfbuzz0b (= 6.0.0+dfsg-3build1), libicu72 (= 72.1-3ubuntu1), libimagequant0 (= 2.17.0-1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-14ubuntu1), libjansson4 (= 2.14-2), libjbig0 (= 2.1-6ubuntu1), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libk5crypto3 (= 1.20.1-1build1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-1build1), libkrb5support0 (= 1.20.1-1build1), liblapack3 (= 3.11.0-2), liblcms2-2 (= 2.14-1build1), liblmdb0 (= 0.9.24-1build2), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.1-0.1), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmbedcrypto7 (= 2.28.2-1), libmbedtls14 (= 2.28.2-1), libmbedx509-1 (= 2.28.2-1), libmd0 (= 1.0.4-2), libmount1 (= 2.38.1-4ubuntu1), libmpc3 (= 1.3.1-1), libmpdec3 (= 2.5.1-2build2), libmpfr6 (= 4.2.0-1), libmurmurhash2 (= 1.5-3), libncursesw6 (= 6.4-2), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libopenjp2-7 (= 2.5.0-1build1), libpam-modules (= 1.5.2-5ubuntu1), libpam-modules-bin (= 1.5.2-5ubuntu1), libpam-runtime (= 1.5.2-5ubuntu1), libpam0g (= 1.5.2-5ubuntu1), libpcre2-8-0 (= 10.42-1), libpcre3 (= 2:8.39-15), libperl5.36 (= 5.36.0-7), libpipeline1 (= 1.5.7-1), libpng16-16 (= 1.6.39-2), libpython3-stdlib (= 3.11.1-3), libpython3.10-minimal (= 3.10.9-1), libpython3.10-stdlib (= 3.10.9-1), libpython3.11-minimal (= 3.11.1-2), libpython3.11-stdlib (= 3.11.1-2), libraqm0 (= 0.7.0-4.1), libreadline8 (= 8.2-1.3), libseccomp2 (= 2.5.4-1ubuntu2), libselinux1 (= 3.4-1build3), libsmartcols1 (= 2.38.1-4ubuntu1), libsqlite3-0 (= 3.40.1-1), libssl3 (= 3.0.7-1ubuntu1), libstdc++-12-dev (= 12.2.0-14ubuntu1), libstdc++6 (= 12.2.0-14ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 252.4-1ubuntu1), libtiff6 (= 4.5.0-4ubuntu1), libtinfo6 (= 6.4-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-5), libubsan1 (= 12.2.0-14ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 252.4-1ubuntu1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-4ubuntu1), libwebp7 (= 1.2.4-0.1build1), libwebpdemux2 (= 1.2.4-0.1build1), libwebpmux3 (= 1.2.4-0.1build1), libxau6 (= 1:1.0.9-1build5), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxml2 (= 2.9.14+dfsg-1.1build1), libzstd1 (= 1.5.2+dfsg2-3), linux-libc-dev (= 6.1.0-14.14), login (= 1:4.13+dfsg1-1ubuntu1), lsb-base (= 11.6), lto-disabled-list (= 37), m4 (= 1.4.19-3), mailcap (= 3.70+nmu1ubuntu1), make (= 4.3-4.1build1), man-db (= 2.11.2-1), mash (= 2.3+dfsg-3build1), mawk (= 1.3.4.20200120-3.1), media-types (= 9.0.0), mime-support (= 3.66), ncbi-blast+ (= 2.12.0+ds-3build1), ncbi-data (= 6.1.20170106+dfsg1-10), ncurses-base (= 6.4-2), ncurses-bin (= 6.4-2), patch (= 2.7.6-7build2), perl (= 5.36.0-7), perl-base (= 5.36.0-7), perl-modules-5.36 (= 5.36.0-7), po-debconf (= 1.0.21+nmu1), python3 (= 3.11.1-3), python3-biopython (= 1.80+dfsg-4), python3-distutils (= 3.10.8-1), python3-lib2to3 (= 3.10.8-1), python3-minimal (= 3.11.1-3), python3-numpy (= 1:1.24.1-2), python3-pil (= 9.4.0-1.1build1), python3-pkg-resources (= 66.1.1-1), python3-renderpm (= 3.6.12-1), python3-reportlab (= 3.6.12-1), python3-reportlab-accel (= 3.6.12-1), python3-setuptools (= 66.1.1-1), python3.10 (= 3.10.9-1), python3.10-minimal (= 3.10.9-1), python3.11 (= 3.11.1-2), python3.11-minimal (= 3.11.1-2), readline-common (= 8.2-1.3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.17+nmu1), sgml-base (= 1.31), sysvinit-utils (= 3.05-7ubuntu2), tar (= 1.34+dfsg-1.1), usrmerge (= 33ubuntu1), util-linux (= 2.38.1-4ubuntu1), util-linux-extra (= 2.38.1-4ubuntu1), w3c-sgml-lib (= 1.3-3), x11-common (= 1:7.7+23ubuntu2), xfonts-encodings (= 1:1.0.5-0ubuntu2), xfonts-utils (= 1:7.7+6build2), xml-core (= 0.18+nmu1), xz-utils (= 5.4.1-0.1), zlib1g (= 1:1.2.13.dfsg-1ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1675665471" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kleborate_2.3.1-1_s390x.deb --------------------------- new Debian package, version 2.0. size 8722196 bytes: control archive=3811 bytes. 1035 bytes, 23 lines control 9044 bytes, 93 lines md5sums 717 bytes, 36 lines * postinst #!/bin/sh 638 bytes, 32 lines * prerm #!/bin/sh Package: kleborate Version: 2.3.1-1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 61969 Depends: python3-biopython, python3:any, ncbi-blast+, mash, kaptive, kaptive-data, python3-distutils Section: science Priority: optional Homepage: https://github.com/katholt/Kleborate Description: tool to screen Klebsiella genome assemblies Kleborate is a tool to screen Klebsiella genome assemblies for: . * MLST sequence type * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.) * ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb) * virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2) * antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive drwxr-xr-x root/root 0 2023-02-06 06:37 ./ drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/ drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/bin/ -rwxr-xr-x root/root 968 2023-02-06 06:37 ./usr/bin/kleborate drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/lib/ drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/lib/python3/ drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/ -rw-r--r-- root/root 3043 2023-02-06 06:37 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2023-02-06 06:37 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/dependency_links.txt -rw-r--r-- root/root 54 2023-02-06 06:37 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/entry_points.txt -rw-r--r-- root/root 1 2023-02-06 06:37 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/not-zip-safe -rw-r--r-- root/root 0 2023-02-06 06:37 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/requires.txt -rw-r--r-- root/root 18 2023-02-06 06:37 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/top_level.txt drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/ -rw-r--r-- root/root 0 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/__init__.py -rw-r--r-- root/root 27543 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/__main__.py -rw-r--r-- root/root 5846 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/blastn.py -rw-r--r-- root/root 2916 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/contig_stats.py drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/ -rw-r--r-- root/root 2034 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/AbST_profiles.txt -rw-r--r-- root/root 246517 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/CARD_AMR_clustered.csv -rw-r--r-- root/root 2503292 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta -rw-r--r-- root/root 245794 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta.nhr -rw-r--r-- root/root 607403 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta.nsq -rw-r--r-- root/root 3178 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/CbST_profiles.txt drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ -rw-r--r-- root/root 159849 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp1.embl -rw-r--r-- root/root 288072 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp10.embl -rw-r--r-- root/root 200467 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp11.embl -rw-r--r-- root/root 209427 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp12.embl -rw-r--r-- root/root 135487 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp13.embl -rw-r--r-- root/root 156338 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp14.embl -rw-r--r-- root/root 98000 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp15.gff -rw-r--r-- root/root 76259 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp16.gff -rw-r--r-- root/root 62700 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp17.gff -rw-r--r-- root/root 70640 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp18.gff -rw-r--r-- root/root 46679 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp19.gff -rw-r--r-- root/root 132081 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp2.embl -rw-r--r-- root/root 68397 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp20.gff -rw-r--r-- root/root 69836 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp21.gff -rw-r--r-- root/root 132015 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp22.gff -rw-r--r-- root/root 133407 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp3.embl -rw-r--r-- root/root 123468 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp4.embl -rw-r--r-- root/root 139146 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp5.embl -rw-r--r-- root/root 143055 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp6.embl -rw-r--r-- root/root 179088 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp7.embl -rw-r--r-- root/root 95993 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp8.embl -rw-r--r-- root/root 119119 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp9.embl -rw-r--r-- root/root 1354966 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta -rw-r--r-- root/root 215766 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta.nhr -rw-r--r-- root/root 328075 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta.nsq -rw-r--r-- root/root 1256 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/MgrB_and_PmrB.fasta -rw-r--r-- root/root 134 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/MgrB_and_PmrB.fasta.nhr -rw-r--r-- root/root 313 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/MgrB_and_PmrB.fasta.nsq -rw-r--r-- root/root 2202 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/OmpK.fasta -rw-r--r-- root/root 138 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/OmpK.fasta.nhr -rw-r--r-- root/root 549 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/OmpK.fasta.nsq -rw-r--r-- root/root 733 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/QRDR_120.fasta -rw-r--r-- root/root 134 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/QRDR_120.fasta.nhr -rw-r--r-- root/root 183 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/QRDR_120.fasta.nsq -rw-r--r-- root/root 4457 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/RmST_profiles.txt -rw-r--r-- root/root 917 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/SmST_profiles.txt -rw-r--r-- root/root 28037 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/YbST_profiles.txt -rw-r--r-- root/root 1206537 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/clb_alleles.fasta -rw-r--r-- root/root 19478 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/clb_alleles.fasta.nhr -rw-r--r-- root/root 296281 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/clb_alleles.fasta.nsq -rw-r--r-- root/root 372155 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/iro_alleles.fasta -rw-r--r-- root/root 10628 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/iro_alleles.fasta.nhr -rw-r--r-- root/root 91253 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/iro_alleles.fasta.nsq -rw-r--r-- root/root 368435 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/iuc_alleles.fasta -rw-r--r-- root/root 15589 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/iuc_alleles.fasta.nhr -rw-r--r-- root/root 90245 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/iuc_alleles.fasta.nsq -rw-r--r-- root/root 132321 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/kpneumoniae.txt -rw-r--r-- root/root 39631 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/rmpA2.fasta -rw-r--r-- root/root 4625 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/rmpA2.fasta.nhr -rw-r--r-- root/root 9711 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/rmpA2.fasta.nsq -rw-r--r-- root/root 102285 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/rmp_alleles.fasta -rw-r--r-- root/root 18969 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/rmp_alleles.fasta.nhr -rw-r--r-- root/root 24403 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/rmp_alleles.fasta.nsq -rw-r--r-- root/root 37390336 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/species_mash_sketches.msh -rw-r--r-- root/root 257314 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/wzi.fasta -rw-r--r-- root/root 39169 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/wzi.fasta.nhr -rw-r--r-- root/root 62140 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/wzi.fasta.nsq -rw-r--r-- root/root 7252 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/wzi.txt -rw-r--r-- root/root 11322768 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ybt_alleles.fasta -rw-r--r-- root/root 189988 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/ybt_alleles.fasta.nhr -rw-r--r-- root/root 2825755 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/data/ybt_alleles.fasta.nsq -rw-r--r-- root/root 7044 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/help_formatter.py -rw-r--r-- root/root 7005 2023-02-06 06:37 ./usr/lib/python3/dist-packages/kleborate/kaptive.py -rw-r--r-- root/root 3224 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/misc.py -rw-r--r-- root/root 11439 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/mlstBLAST.py -rw-r--r-- root/root 15686 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/resBLAST.py -rw-r--r-- root/root 1911 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/rmpA.py -rw-r--r-- root/root 9028 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/shv_mutations.py -rw-r--r-- root/root 2684 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/species.py -rw-r--r-- root/root 2102 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/truncation.py -rw-r--r-- root/root 895 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/version.py drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/share/ drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/share/doc/kleborate/ -rw-r--r-- root/root 2421 2023-01-23 03:28 ./usr/share/doc/kleborate/README.md -rw-r--r-- root/root 331 2023-02-06 06:37 ./usr/share/doc/kleborate/README.test -rw-r--r-- root/root 941 2023-02-06 06:37 ./usr/share/doc/kleborate/changelog.Debian.gz -rw-r--r-- root/root 1146 2023-02-06 06:37 ./usr/share/doc/kleborate/copyright drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/share/man/ drwxr-xr-x root/root 0 2023-02-06 06:37 ./usr/share/man/man1/ -rw-r--r-- root/root 808 2023-02-06 06:37 ./usr/share/man/man1/kleborate.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: 365136 Build-Time: 69 Distribution: lunar-proposed Host Architecture: s390x Install-Time: 56 Job: kleborate_2.3.1-1.dsc Machine Architecture: s390x Package: kleborate Package-Time: 128 Source-Version: 2.3.1-1 Space: 365136 Status: successful Version: 2.3.1-1 -------------------------------------------------------------------------------- Finished at 2023-02-06T17:45:29Z Build needed 00:02:08, 365136k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-25560814 Scanning for processes to kill in build PACKAGEBUILD-25560814