https://launchpad.net/ubuntu/+source/kleborate/2.3.1-2/+build/26218150 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-017 5.4.0-149-generic #166-Ubuntu SMP Tue Apr 18 16:52:17 UTC 2023 s390x Buildd toolchain package versions: launchpad-buildd_232~632~ubuntu20.04.1 python3-lpbuildd_232~632~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 25 May 17:23:22 ntpdate[1896]: step time server 10.211.37.1 offset 1.211751 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=mantic --arch=s390x PACKAGEBUILD-26218150 --image-type chroot /home/buildd/filecache-default/22b7ec405c1fe881d1e0795ebcfd3bff662be15c Creating target for build PACKAGEBUILD-26218150 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=mantic --arch=s390x PACKAGEBUILD-26218150 Starting target for build PACKAGEBUILD-26218150 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=mantic --arch=s390x PACKAGEBUILD-26218150 'deb http://ftpmaster.internal/ubuntu mantic main universe' 'deb http://ftpmaster.internal/ubuntu mantic-security main universe' 'deb http://ftpmaster.internal/ubuntu mantic-updates main universe' 'deb http://ftpmaster.internal/ubuntu mantic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-26218150 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=mantic --arch=s390x PACKAGEBUILD-26218150 Updating target for build PACKAGEBUILD-26218150 Get:1 http://ftpmaster.internal/ubuntu mantic InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu mantic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu mantic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu mantic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main s390x Packages [1323 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/universe s390x Packages [14.2 MB] Get:8 http://ftpmaster.internal/ubuntu mantic/universe Translation-en [5928 kB] Get:9 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x Packages [50.4 kB] Get:10 http://ftpmaster.internal/ubuntu mantic-proposed/main Translation-en [23.2 kB] Get:11 http://ftpmaster.internal/ubuntu mantic-proposed/universe s390x Packages [101 kB] Get:12 http://ftpmaster.internal/ubuntu mantic-proposed/universe Translation-en [47.8 kB] Fetched 22.8 MB in 4s (5409 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-13-base libproc2-0 The following packages will be upgraded: adduser advancecomp apt base-files bash binutils binutils-common binutils-s390x-linux-gnu bsdutils ca-certificates coreutils cpp cpp-12 dash debconf diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-12 gcc gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv grep hostname libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdpkg-perl libext2fs2 libfakeroot libfdisk1 libgcc-12-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgssapi-krb5-2 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblzma5 libmount1 libmpfr6 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev logsave lsb-base lto-disabled-list mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.36 pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tar tzdata usrmerge util-linux util-linux-extra xz-utils zlib1g 129 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 89.6 MB of archives. After this operation, 610 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu mantic/main s390x libcrypt-dev s390x 1:4.4.33-2 [114 kB] Get:2 http://ftpmaster.internal/ubuntu mantic/main s390x libc6-dev s390x 2.37-0ubuntu2 [1511 kB] Get:3 http://ftpmaster.internal/ubuntu mantic/main s390x libc-dev-bin s390x 2.37-0ubuntu2 [19.6 kB] Get:4 http://ftpmaster.internal/ubuntu mantic/main s390x libcrypt1 s390x 1:4.4.33-2 [82.2 kB] Get:5 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x linux-libc-dev s390x 6.3.0-4.4 [1503 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main s390x libc6 s390x 2.37-0ubuntu2 [2684 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/main s390x libc-bin s390x 2.37-0ubuntu2 [599 kB] Get:8 http://ftpmaster.internal/ubuntu mantic/main s390x gcc-13-base s390x 13.1.0-2ubuntu2 [41.2 kB] Get:9 http://ftpmaster.internal/ubuntu mantic/main s390x libgcc-s1 s390x 13.1.0-2ubuntu2 [35.6 kB] Get:10 http://ftpmaster.internal/ubuntu mantic/main s390x base-files s390x 12.3ubuntu3 [76.0 kB] Get:11 http://ftpmaster.internal/ubuntu mantic/main s390x bash s390x 5.2.15-2ubuntu1 [786 kB] Get:12 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x bsdutils s390x 1:2.38.1-5ubuntu1 [90.6 kB] Get:13 http://ftpmaster.internal/ubuntu mantic/main s390x coreutils s390x 9.1-1ubuntu2 [1390 kB] Get:14 http://ftpmaster.internal/ubuntu mantic/main s390x liblzma5 s390x 5.4.1-0.2 [124 kB] Get:15 http://ftpmaster.internal/ubuntu mantic/main s390x libgcrypt20 s390x 1.10.1-3ubuntu1 [466 kB] Get:16 http://ftpmaster.internal/ubuntu mantic/main s390x libstdc++6 s390x 13.1.0-2ubuntu2 [874 kB] Get:17 http://ftpmaster.internal/ubuntu mantic/main s390x libacl1 s390x 2.3.1-3 [16.5 kB] Get:18 http://ftpmaster.internal/ubuntu mantic/main s390x libapparmor1 s390x 3.0.8-1ubuntu2 [46.2 kB] Get:19 http://ftpmaster.internal/ubuntu mantic/main s390x libaudit-common all 1:3.0.9-1 [5142 B] Get:20 http://ftpmaster.internal/ubuntu mantic/main s390x libcap-ng0 s390x 0.8.3-1build2 [15.1 kB] Get:21 http://ftpmaster.internal/ubuntu mantic/main s390x libaudit1 s390x 1:3.0.9-1 [45.9 kB] Get:22 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libblkid1 s390x 2.38.1-5ubuntu1 [107 kB] Get:23 http://ftpmaster.internal/ubuntu mantic/main s390x libcap2 s390x 1:2.66-3ubuntu2 [28.4 kB] Get:24 http://ftpmaster.internal/ubuntu mantic/main s390x libperl5.36 s390x 5.36.0-7 [4716 kB] Get:25 http://ftpmaster.internal/ubuntu mantic/main s390x perl s390x 5.36.0-7 [235 kB] Get:26 http://ftpmaster.internal/ubuntu mantic/main s390x perl-base s390x 5.36.0-7 [1713 kB] Get:27 http://ftpmaster.internal/ubuntu mantic/main s390x perl-modules-5.36 all 5.36.0-7 [2984 kB] Get:28 http://ftpmaster.internal/ubuntu mantic/main s390x libdb5.3 s390x 5.3.28+dfsg2-1 [707 kB] Get:29 http://ftpmaster.internal/ubuntu mantic/main s390x zlib1g s390x 1:1.2.13.dfsg-1ubuntu4 [65.6 kB] Get:30 http://ftpmaster.internal/ubuntu mantic/main s390x debconf all 1.5.82 [125 kB] Get:31 http://ftpmaster.internal/ubuntu mantic/main s390x libssl3 s390x 3.0.8-1ubuntu2 [1576 kB] Get:32 http://ftpmaster.internal/ubuntu mantic/main s390x libzstd1 s390x 1.5.4+dfsg2-5 [269 kB] Get:33 http://ftpmaster.internal/ubuntu mantic/main s390x libkmod2 s390x 30+20221128-1ubuntu1 [48.1 kB] Get:34 http://ftpmaster.internal/ubuntu mantic/main s390x libpcre2-8-0 s390x 10.42-1 [210 kB] Get:35 http://ftpmaster.internal/ubuntu mantic/main s390x libselinux1 s390x 3.4-1build4 [77.2 kB] Get:36 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libmount1 s390x 2.38.1-5ubuntu1 [118 kB] Get:37 http://ftpmaster.internal/ubuntu mantic/main s390x libpam0g s390x 1.5.2-6ubuntu1 [64.8 kB] Get:38 http://ftpmaster.internal/ubuntu mantic/main s390x libseccomp2 s390x 2.5.4-1ubuntu3 [49.1 kB] Get:39 http://ftpmaster.internal/ubuntu mantic/main s390x systemd-sysv s390x 252.5-2ubuntu3 [11.5 kB] Get:40 http://ftpmaster.internal/ubuntu mantic/main s390x systemd s390x 252.5-2ubuntu3 [2861 kB] Get:41 http://ftpmaster.internal/ubuntu mantic/main s390x libsystemd-shared s390x 252.5-2ubuntu3 [1731 kB] Get:42 http://ftpmaster.internal/ubuntu mantic/main s390x libargon2-1 s390x 0~20190702+dfsg-3 [50.4 kB] Get:43 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libuuid1 s390x 2.38.1-5ubuntu1 [32.4 kB] Get:44 http://ftpmaster.internal/ubuntu mantic/main s390x libcryptsetup12 s390x 2:2.6.1-4ubuntu1 [229 kB] Get:45 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libfdisk1 s390x 2.38.1-5ubuntu1 [141 kB] Get:46 http://ftpmaster.internal/ubuntu mantic/main s390x libp11-kit0 s390x 0.24.1-2ubuntu1 [249 kB] Get:47 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x mount s390x 2.38.1-5ubuntu1 [112 kB] Get:48 http://ftpmaster.internal/ubuntu mantic/main s390x libsystemd0 s390x 252.5-2ubuntu3 [378 kB] Get:49 http://ftpmaster.internal/ubuntu mantic/main s390x libudev1 s390x 252.5-2ubuntu3 [148 kB] Get:50 http://ftpmaster.internal/ubuntu mantic/main s390x libapt-pkg6.0 s390x 2.7.0 [874 kB] Get:51 http://ftpmaster.internal/ubuntu mantic/main s390x tar s390x 1.34+dfsg-1.2 [289 kB] Get:52 http://ftpmaster.internal/ubuntu mantic/main s390x dpkg s390x 1.21.22ubuntu1 [1380 kB] Get:53 http://ftpmaster.internal/ubuntu mantic/main s390x dash s390x 0.5.12-2ubuntu1 [88.8 kB] Get:54 http://ftpmaster.internal/ubuntu mantic/main s390x diffutils s390x 1:3.8-4 [177 kB] Get:55 http://ftpmaster.internal/ubuntu mantic/main s390x findutils s390x 4.9.0-4ubuntu1 [297 kB] Get:56 http://ftpmaster.internal/ubuntu mantic/main s390x grep s390x 3.8-5 [160 kB] Get:57 http://ftpmaster.internal/ubuntu mantic/main s390x hostname s390x 3.23+nmu1ubuntu1 [10.8 kB] Get:58 http://ftpmaster.internal/ubuntu mantic/main s390x ncurses-bin s390x 6.4-4 [186 kB] Get:59 http://ftpmaster.internal/ubuntu mantic/main s390x sed s390x 4.9-1 [193 kB] Get:60 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libsmartcols1 s390x 2.38.1-5ubuntu1 [59.1 kB] Get:61 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x util-linux-extra s390x 2.38.1-5ubuntu1 [80.1 kB] Get:62 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x util-linux s390x 2.38.1-5ubuntu1 [1065 kB] Get:63 http://ftpmaster.internal/ubuntu mantic/main s390x ncurses-base all 6.4-4 [23.3 kB] Get:64 http://ftpmaster.internal/ubuntu mantic/main s390x sysvinit-utils s390x 3.06-4ubuntu1 [33.1 kB] Get:65 http://ftpmaster.internal/ubuntu mantic/main s390x lsb-base all 11.6 [4606 B] Get:66 http://ftpmaster.internal/ubuntu mantic/main s390x adduser all 3.129ubuntu1 [59.0 kB] Get:67 http://ftpmaster.internal/ubuntu mantic/main s390x gpgv s390x 2.2.40-1.1ubuntu1 [136 kB] Get:68 http://ftpmaster.internal/ubuntu mantic/main s390x libgnutls30 s390x 3.7.9-2ubuntu1 [904 kB] Get:69 http://ftpmaster.internal/ubuntu mantic/main s390x apt s390x 2.7.0 [1319 kB] Get:70 http://ftpmaster.internal/ubuntu mantic/main s390x libpam-modules-bin s390x 1.5.2-6ubuntu1 [48.2 kB] Get:71 http://ftpmaster.internal/ubuntu mantic/main s390x libpam-modules s390x 1.5.2-6ubuntu1 [280 kB] Get:72 http://ftpmaster.internal/ubuntu mantic/main s390x logsave s390x 1.47.0-1ubuntu1 [14.1 kB] Get:73 http://ftpmaster.internal/ubuntu mantic/main s390x libext2fs2 s390x 1.47.0-1ubuntu1 [212 kB] Get:74 http://ftpmaster.internal/ubuntu mantic/main s390x e2fsprogs s390x 1.47.0-1ubuntu1 [589 kB] Get:75 http://ftpmaster.internal/ubuntu mantic/main s390x libattr1 s390x 1:2.5.1-4 [12.4 kB] Get:76 http://ftpmaster.internal/ubuntu mantic/main s390x libdebconfclient0 s390x 0.267ubuntu1 [7838 B] Get:77 http://ftpmaster.internal/ubuntu mantic/main s390x libpam-runtime all 1.5.2-6ubuntu1 [41.5 kB] Get:78 http://ftpmaster.internal/ubuntu mantic/main s390x libsemanage-common all 3.4-1build4 [9852 B] Get:79 http://ftpmaster.internal/ubuntu mantic/main s390x libsemanage2 s390x 3.4-1build4 [88.5 kB] Get:80 http://ftpmaster.internal/ubuntu mantic/main s390x libncurses6 s390x 6.4-4 [111 kB] Get:81 http://ftpmaster.internal/ubuntu mantic/main s390x libncursesw6 s390x 6.4-4 [143 kB] Get:82 http://ftpmaster.internal/ubuntu mantic/main s390x libtinfo6 s390x 6.4-4 [103 kB] Get:83 http://ftpmaster.internal/ubuntu mantic/main s390x usrmerge all 35ubuntu1 [58.2 kB] Get:84 http://ftpmaster.internal/ubuntu mantic/main s390x libcom-err2 s390x 1.47.0-1ubuntu1 [14.4 kB] Get:85 http://ftpmaster.internal/ubuntu mantic/main s390x libproc2-0 s390x 2:4.0.3-1ubuntu1 [52.0 kB] Get:86 http://ftpmaster.internal/ubuntu mantic/main s390x libss2 s390x 1.47.0-1ubuntu1 [16.6 kB] Get:87 http://ftpmaster.internal/ubuntu mantic/main s390x procps s390x 2:4.0.3-1ubuntu1 [605 kB] Get:88 http://ftpmaster.internal/ubuntu mantic/main s390x sensible-utils all 0.0.17+nmu1 [19.3 kB] Get:89 http://ftpmaster.internal/ubuntu mantic/main s390x openssl s390x 3.0.8-1ubuntu2 [1167 kB] Get:90 http://ftpmaster.internal/ubuntu mantic/main s390x ca-certificates all 20230311ubuntu1 [152 kB] Get:91 http://ftpmaster.internal/ubuntu mantic/main s390x libgssapi-krb5-2 s390x 1.20.1-2 [136 kB] Get:92 http://ftpmaster.internal/ubuntu mantic/main s390x libkrb5-3 s390x 1.20.1-2 [340 kB] Get:93 http://ftpmaster.internal/ubuntu mantic/main s390x libkrb5support0 s390x 1.20.1-2 [32.6 kB] Get:94 http://ftpmaster.internal/ubuntu mantic/main s390x libk5crypto3 s390x 1.20.1-2 [82.6 kB] Get:95 http://ftpmaster.internal/ubuntu mantic/main s390x readline-common all 8.2-1.3 [55.7 kB] Get:96 http://ftpmaster.internal/ubuntu mantic/main s390x libreadline8 s390x 8.2-1.3 [151 kB] Get:97 http://ftpmaster.internal/ubuntu mantic/main s390x libsqlite3-0 s390x 3.40.1-2 [645 kB] Get:98 http://ftpmaster.internal/ubuntu mantic/main s390x tzdata all 2023c-4exp1ubuntu1 [271 kB] Get:99 http://ftpmaster.internal/ubuntu mantic/main s390x xz-utils s390x 5.4.1-0.2 [270 kB] Get:100 http://ftpmaster.internal/ubuntu mantic/main s390x advancecomp s390x 2.5-1 [174 kB] Get:101 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libctf0 s390x 2.40-2ubuntu6 [94.2 kB] Get:102 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libctf-nobfd0 s390x 2.40-2ubuntu6 [95.7 kB] Get:103 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x binutils-s390x-linux-gnu s390x 2.40-2ubuntu6 [2057 kB] Get:104 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libbinutils s390x 2.40-2ubuntu6 [462 kB] Get:105 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x binutils s390x 2.40-2ubuntu6 [3050 B] Get:106 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x binutils-common s390x 2.40-2ubuntu6 [226 kB] Get:107 http://ftpmaster.internal/ubuntu mantic/main s390x libmpfr6 s390x 4.2.0-1 [278 kB] Get:108 http://ftpmaster.internal/ubuntu mantic/main s390x g++-12 s390x 12.3.0-1ubuntu1 [9477 kB] Get:109 http://ftpmaster.internal/ubuntu mantic/main s390x gcc-12 s390x 12.3.0-1ubuntu1 [16.2 MB] Get:110 http://ftpmaster.internal/ubuntu mantic/main s390x cpp-12 s390x 12.3.0-1ubuntu1 [8199 kB] Get:111 http://ftpmaster.internal/ubuntu mantic/main s390x libubsan1 s390x 13.1.0-2ubuntu2 [1113 kB] Get:112 http://ftpmaster.internal/ubuntu mantic/main s390x libgomp1 s390x 13.1.0-2ubuntu2 [146 kB] Get:113 http://ftpmaster.internal/ubuntu mantic/main s390x libitm1 s390x 13.1.0-2ubuntu2 [31.3 kB] Get:114 http://ftpmaster.internal/ubuntu mantic/main s390x libatomic1 s390x 13.1.0-2ubuntu2 [9386 B] Get:115 http://ftpmaster.internal/ubuntu mantic/main s390x libasan8 s390x 13.1.0-2ubuntu2 [2846 kB] Get:116 http://ftpmaster.internal/ubuntu mantic/main s390x libstdc++-12-dev s390x 12.3.0-1ubuntu1 [2202 kB] Get:117 http://ftpmaster.internal/ubuntu mantic/main s390x libgcc-12-dev s390x 12.3.0-1ubuntu1 [853 kB] Get:118 http://ftpmaster.internal/ubuntu mantic/main s390x libcc1-0 s390x 13.1.0-2ubuntu2 [50.4 kB] Get:119 http://ftpmaster.internal/ubuntu mantic/main s390x gcc-12-base s390x 12.3.0-1ubuntu1 [42.3 kB] Get:120 http://ftpmaster.internal/ubuntu mantic/main s390x g++ s390x 4:12.2.0-3ubuntu1 [1116 B] Get:121 http://ftpmaster.internal/ubuntu mantic/main s390x gcc s390x 4:12.2.0-3ubuntu1 [5168 B] Get:122 http://ftpmaster.internal/ubuntu mantic/main s390x cpp s390x 4:12.2.0-3ubuntu1 [27.8 kB] Get:123 http://ftpmaster.internal/ubuntu mantic/main s390x dpkg-dev all 1.21.22ubuntu1 [1118 kB] Get:124 http://ftpmaster.internal/ubuntu mantic/main s390x libdpkg-perl all 1.21.22ubuntu1 [247 kB] Get:125 http://ftpmaster.internal/ubuntu mantic/main s390x lto-disabled-list all 41 [12.4 kB] Get:126 http://ftpmaster.internal/ubuntu mantic/main s390x libfakeroot s390x 1.31-1.2 [31.1 kB] Get:127 http://ftpmaster.internal/ubuntu mantic/main s390x fakeroot s390x 1.31-1.2 [59.6 kB] Get:128 http://ftpmaster.internal/ubuntu mantic/main s390x gpg s390x 2.2.40-1.1ubuntu1 [508 kB] Get:129 http://ftpmaster.internal/ubuntu mantic/main s390x gpgconf s390x 2.2.40-1.1ubuntu1 [97.4 kB] Get:130 http://ftpmaster.internal/ubuntu mantic/main s390x gpg-agent s390x 2.2.40-1.1ubuntu1 [213 kB] Get:131 http://ftpmaster.internal/ubuntu mantic/main s390x pkgbinarymangler all 153 [16.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 89.6 MB in 5s (18.7 MB/s) (Reading database ... 12875 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.33-2_s390x.deb ... Unpacking libcrypt-dev:s390x (1:4.4.33-2) over (1:4.4.33-1) ... Preparing to unpack .../libc6-dev_2.37-0ubuntu2_s390x.deb ... Unpacking libc6-dev:s390x (2.37-0ubuntu2) over (2.36-0ubuntu4) ... Preparing to unpack .../libc-dev-bin_2.37-0ubuntu2_s390x.deb ... Unpacking libc-dev-bin (2.37-0ubuntu2) over (2.36-0ubuntu4) ... Preparing to unpack .../libcrypt1_1%3a4.4.33-2_s390x.deb ... Unpacking libcrypt1:s390x (1:4.4.33-2) over (1:4.4.33-1) ... Setting up libcrypt1:s390x (1:4.4.33-2) ... (Reading database ... 12875 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_6.3.0-4.4_s390x.deb ... Unpacking linux-libc-dev:s390x (6.3.0-4.4) over (5.19.0-21.21) ... Preparing to unpack .../libc6_2.37-0ubuntu2_s390x.deb ... Unpacking libc6:s390x (2.37-0ubuntu2) over (2.36-0ubuntu4) ... Setting up libc6:s390x (2.37-0ubuntu2) ... (Reading database ... 12879 files and directories currently installed.) 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Setting up gcc-12-base:s390x (12.3.0-1ubuntu1) ... Setting up tzdata (2023c-4exp1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu May 25 17:23:49 UTC 2023. Universal Time is now: Thu May 25 17:23:49 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.31-1.2) ... Setting up perl-modules-5.36 (5.36.0-7) ... Setting up libmpfr6:s390x (4.2.0-1) ... Setting up libncurses6:s390x (6.4-4) ... Setting up xz-utils (5.4.1-0.2) ... Setting up libproc2-0:s390x (2:4.0.3-1ubuntu1) ... Setting up libatomic1:s390x (13.1.0-2ubuntu2) ... Setting up libss2:s390x (1.47.0-1ubuntu1) ... Setting up libncursesw6:s390x (6.4-4) ... Setting up libk5crypto3:s390x (1.20.1-2) ... Setting up logsave (1.47.0-1ubuntu1) ... Setting up libfdisk1:s390x (2.38.1-5ubuntu1) ... Setting up libubsan1:s390x (13.1.0-2ubuntu2) ... Setting up advancecomp (2.5-1) ... Setting up mount (2.38.1-5ubuntu1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libcrypt-dev:s390x (1:4.4.33-2) ... Setting up libasan8:s390x (13.1.0-2ubuntu2) ... Setting up procps (2:4.0.3-1ubuntu1) ... Setting up libcryptsetup12:s390x (2:2.6.1-4ubuntu1) ... Setting up libkrb5-3:s390x (1.20.1-2) ... Setting up libbinutils:s390x (2.40-2ubuntu6) ... Setting up libc-dev-bin (2.37-0ubuntu2) ... Setting up openssl (3.0.8-1ubuntu2) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.2-1.3) ... Setting up libcc1-0:s390x (13.1.0-2ubuntu2) ... Setting up libperl5.36:s390x (5.36.0-7) ... Setting up libitm1:s390x (13.1.0-2ubuntu2) ... Setting up libkmod2:s390x (30+20221128-1ubuntu1) ... Setting up libctf0:s390x (2.40-2ubuntu6) ... Setting up cpp-12 (12.3.0-1ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.40-2ubuntu6) ... Setting up pkgbinarymangler (153) ... Setting up libreadline8:s390x (8.2-1.3) ... Setting up e2fsprogs (1.47.0-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Setting up binutils (2.40-2ubuntu6) ... Setting up ca-certificates (20230311ubuntu1) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 19 added, 6 removed; done. Setting up perl (5.36.0-7) ... Setting up libgcc-12-dev:s390x (12.3.0-1ubuntu1) ... Setting up libgssapi-krb5-2:s390x (1.20.1-2) ... Setting up libsystemd-shared:s390x (252.5-2ubuntu3) ... Setting up libdpkg-perl (1.21.22ubuntu1) ... Setting up cpp (4:12.2.0-3ubuntu1) ... Setting up gpgconf (2.2.40-1.1ubuntu1) ... Setting up libc6-dev:s390x (2.37-0ubuntu2) ... Setting up gpg (2.2.40-1.1ubuntu1) ... Setting up gpg-agent (2.2.40-1.1ubuntu1) ... Setting up libstdc++-12-dev:s390x (12.3.0-1ubuntu1) ... Setting up systemd (252.5-2ubuntu3) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up dpkg-dev (1.21.22ubuntu1) ... Setting up gcc-12 (12.3.0-1ubuntu1) ... Setting up g++-12 (12.3.0-1ubuntu1) ... Setting up systemd-sysv (252.5-2ubuntu3) ... Setting up gcc (4:12.2.0-3ubuntu1) ... Setting up g++ (4:12.2.0-3ubuntu1) ... Processing triggers for libc-bin (2.37-0ubuntu2) ... Processing triggers for debianutils (5.7-0.4) ... Processing triggers for ca-certificates (20230311ubuntu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-26218150 s390x mantic-proposed -c chroot:build-PACKAGEBUILD-26218150 --arch=s390x --dist=mantic-proposed --nolog kleborate_2.3.1-2.dsc Initiating build PACKAGEBUILD-26218150 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-149-generic #166-Ubuntu SMP Tue Apr 18 16:52:17 UTC 2023 s390x sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-s390x-017.buildd +==============================================================================+ | kleborate 2.3.1-2 (s390x) Thu, 25 May 2023 17:23:53 +0000 | +==============================================================================+ Package: kleborate Version: 2.3.1-2 Source Version: 2.3.1-2 Distribution: mantic-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-26218150/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/kleborate-idQvSH/resolver-dZg9lt' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- kleborate_2.3.1-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/kleborate-idQvSH/kleborate-2.3.1' with '<>' I: NOTICE: Log filtering will replace 'build/kleborate-idQvSH' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, ncbi-blast+, mash, kaptive, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, ncbi-blast+, mash, kaptive, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [419 B] Get:5 copy:/<>/apt_archive ./ Packages [492 B] Fetched 1868 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-urw-base35 gettext gettext-base groff-base intltool-debian kaptive libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcapnp-0.9.2 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmurmurhash2 libopenjp2-7 libpcre3 libpipeline1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libraqm0 libsub-override-perl libtiff6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap man-db mash media-types mime-support ncbi-blast+ ncbi-data po-debconf python3 python3-biopython python3-distutils python3-lib2to3 python3-minimal python3-numpy python3-pil python3-pkg-resources python3-renderpm python3-reportlab python3-reportlab-accel python3-setuptools python3.11 python3.11-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build python3-installer python3-wheel fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev groff kaptive-data kaptive-example low-memory-monitor gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise gfortran python3-dev python3-pytest python-pil-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-setuptools-doc python3.11-venv python3.11-doc binfmt-support sgml-base-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl python-biopython-doc python3-olefile The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-urw-base35 gettext gettext-base groff-base intltool-debian kaptive libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcapnp-0.9.2 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmurmurhash2 libopenjp2-7 libpcre3 libpipeline1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libraqm0 libsub-override-perl libtiff6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap man-db mash media-types mime-support ncbi-blast+ ncbi-data po-debconf python3 python3-biopython python3-distutils python3-lib2to3 python3-minimal python3-numpy python3-pil python3-pkg-resources python3-renderpm python3-reportlab python3-reportlab-accel python3-setuptools python3.11 python3.11-minimal sbuild-build-depends-main-dummy sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded. 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Get:93 http://ftpmaster.internal/ubuntu mantic/universe s390x ncbi-blast+ s390x 2.12.0+ds-3build1 [11.6 MB] Get:94 http://ftpmaster.internal/ubuntu mantic/universe s390x kaptive all 2.0.4-1 [24.3 kB] Get:95 http://ftpmaster.internal/ubuntu mantic/universe s390x libcapnp-0.9.2 s390x 0.9.2-2 [1165 kB] Get:96 http://ftpmaster.internal/ubuntu mantic-proposed/universe s390x libgslcblas0 s390x 2.7.1+dfsg-4 [109 kB] Get:97 http://ftpmaster.internal/ubuntu mantic-proposed/universe s390x libgsl27 s390x 2.7.1+dfsg-4 [939 kB] Get:98 http://ftpmaster.internal/ubuntu mantic/universe s390x libmurmurhash2 s390x 1.5-3 [5920 B] Get:99 http://ftpmaster.internal/ubuntu mantic/universe s390x mash s390x 2.3+dfsg-3build1 [146 kB] Get:100 http://ftpmaster.internal/ubuntu mantic/main s390x python3-setuptools all 66.1.1-1 [453 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 69.3 MB in 3s (22.4 MB/s) Selecting previously unselected package libpython3.11-minimal:s390x. (Reading database ... 12349 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.3-1_s390x.deb ... Unpacking libpython3.11-minimal:s390x (3.11.3-1) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../libexpat1_2.5.0-1_s390x.deb ... Unpacking libexpat1:s390x (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.3-1_s390x.deb ... Unpacking python3.11-minimal (3.11.3-1) ... Setting up libpython3.11-minimal:s390x (3.11.3-1) ... Setting up libexpat1:s390x (2.5.0-1) ... Setting up python3.11-minimal (3.11.3-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 12663 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1_s390x.deb ... Unpacking python3-minimal (3.11.2-1) ... Selecting previously unselected package media-types. 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Selecting previously unselected package python3-pil:s390x. Preparing to unpack .../71-python3-pil_9.4.0-1.1build1_s390x.deb ... Unpacking python3-pil:s390x (9.4.0-1.1build1) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../72-python3-reportlab_3.6.12-1build1_all.deb ... Unpacking python3-reportlab (3.6.12-1build1) ... Selecting previously unselected package xml-core. Preparing to unpack .../73-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package w3c-sgml-lib. Preparing to unpack .../74-w3c-sgml-lib_1.3-3_all.deb ... Unpacking w3c-sgml-lib (1.3-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../75-python3-biopython_1.80+dfsg-4build1_s390x.deb ... Unpacking python3-biopython (1.80+dfsg-4build1) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../76-ncbi-data_6.1.20170106+dfsg1-10_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg1-10) ... Selecting previously unselected package libmbedcrypto7:s390x. Preparing to unpack .../77-libmbedcrypto7_2.28.3-1_s390x.deb ... Unpacking libmbedcrypto7:s390x (2.28.3-1) ... Selecting previously unselected package libmbedx509-1:s390x. Preparing to unpack .../78-libmbedx509-1_2.28.3-1_s390x.deb ... Unpacking libmbedx509-1:s390x (2.28.3-1) ... Selecting previously unselected package libmbedtls14:s390x. Preparing to unpack .../79-libmbedtls14_2.28.3-1_s390x.deb ... Unpacking libmbedtls14:s390x (2.28.3-1) ... Selecting previously unselected package libpcre3:s390x. Preparing to unpack .../80-libpcre3_2%3a8.39-15_s390x.deb ... Unpacking libpcre3:s390x (2:8.39-15) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../81-ncbi-blast+_2.12.0+ds-3build1_s390x.deb ... Unpacking ncbi-blast+ (2.12.0+ds-3build1) ... Selecting previously unselected package kaptive. Preparing to unpack .../82-kaptive_2.0.4-1_all.deb ... 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Unpacking python3-setuptools (66.1.1-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../89-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:s390x (1.5.7-1) ... Setting up liblmdb0:s390x (0.9.24-1build2) ... Setting up libgraphite2-3:s390x (1.3.14-1build2) ... Setting up liblcms2-2:s390x (2.14-2) ... Setting up ncbi-data (6.1.20170106+dfsg1-10) ... Setting up libxau6:s390x (1:1.0.9-1build5) ... Setting up libicu72:s390x (72.1-3ubuntu2) ... Setting up bsdextrautils (2.38.1-5ubuntu1) ... Setting up libgslcblas0:s390x (2.7.1+dfsg-4) ... Setting up libmurmurhash2:s390x (1.5-3) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:s390x (2.76.2-1ubuntu1) ... No schema files found: doing nothing. Setting up libpython3.11-stdlib:s390x (3.11.3-1) ... Setting up libdebhelper-perl (13.11.4ubuntu3) ... Setting up libbrotli1:s390x (1.0.9-2build8) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:s390x (1:5.44-3) ... Setting up libdeflate0:s390x (1.15-1) ... Setting up gettext-base (0.21-12) ... Setting up libgsl27:s390x (2.7.1+dfsg-4) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... Setting up libpcre3:s390x (2:8.39-15) ... Setting up libfontenc1:s390x (1:1.1.4-1build3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:s390x (3.11.0-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode Setting up libfreetype6:s390x (2.12.1+dfsg-5) ... Setting up libmbedcrypto7:s390x (2.28.3-1) ... Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... Setting up libfribidi0:s390x (1.0.8-2.1ubuntu1) ... Setting up libimagequant0:s390x (2.17.0-1) ... Setting up autopoint (0.21-12) ... Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... Setting up libgfortran5:s390x (13.1.0-2ubuntu2) ... Setting up libcapnp-0.9.2:s390x (0.9.2-2) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:s390x (1.2.4-0.2) ... Setting up libuchardet0:s390x (0.0.7-1build2) ... Setting up libopenjp2-7:s390x (2.5.0-1build1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libharfbuzz0b:s390x (6.0.0+dfsg-3build1) ... Setting up sgml-base (1.31) ... Setting up libwebpmux3:s390x (1.2.4-0.2) ... Setting up libbsd0:s390x (0.11.7-4) ... Setting up mailcap (3.70+nmu1ubuntu1) ... Setting up libelf1:s390x (0.188-2.1) ... Setting up libxml2:s390x (2.9.14+dfsg-1.2) ... Setting up libpython3-stdlib:s390x (3.11.2-1) ... Setting up libjpeg8:s390x (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.11 (3.11.3-1) ... Setting up libdw1:s390x (0.188-2.1) ... Setting up libxdmcp6:s390x (1:1.1.3-0ubuntu5) ... Setting up liblapack3:s390x (3.11.0-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode Setting up libxcb1:s390x (1.15-1) ... Setting up gettext (0.21-12) ... Setting up mime-support (3.66) ... Setting up libmbedx509-1:s390x (2.28.3-1) ... Setting up libmbedtls14:s390x (2.28.3-1) ... Setting up libtool (2.4.7-5) ... Setting up libwebpdemux2:s390x (1.2.4-0.2) ... Setting up python3 (3.11.2-1) ... Setting up xfonts-utils (1:7.7+6build2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up ncbi-blast+ (2.12.0+ds-3build1) ... Setting up dh-autoreconf (20) ... Setting up libraqm0:s390x (0.10.1-1) ... Setting up python3-reportlab-accel:s390x (3.6.12-1build1) ... Setting up mash (2.3+dfsg-3build1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libtiff6:s390x (4.5.0-6ubuntu1) ... Setting up xml-core (0.18+nmu1) ... Setting up debugedit (1:5.0-5) ... Setting up python3-lib2to3 (3.11.3-2) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.3-2) ... Setting up dh-python (5.20230510) ... Setting up python3-setuptools (66.1.1-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-pil:s390x (9.4.0-1.1build1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-reportlab (3.6.12-1build1) ... Setting up python3-renderpm:s390x (3.6.12-1build1) ... Setting up debhelper (13.11.4ubuntu3) ... Processing triggers for libc-bin (2.37-0ubuntu2) ... Processing triggers for systemd (252.5-2ubuntu3) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4build1) ... Setting up kaptive (2.0.4-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-149-generic #166-Ubuntu SMP Tue Apr 18 16:52:17 UTC 2023 s390x (s390x) Toolchain package versions: binutils_2.40-2ubuntu6 dpkg-dev_1.21.22ubuntu1 g++-12_12.3.0-1ubuntu1 gcc-12_12.3.0-1ubuntu1 libc6-dev_2.37-0ubuntu2 libstdc++-12-dev_12.3.0-1ubuntu1 libstdc++6_13.1.0-2ubuntu2 linux-libc-dev_6.3.0-4.4 Package versions: adduser_3.129ubuntu1 advancecomp_2.5-1 apt_2.7.0 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-12 autotools-dev_20220109.1 base-files_12.3ubuntu3 base-passwd_3.6.1 bash_5.2.15-2ubuntu1 binutils_2.40-2ubuntu6 binutils-common_2.40-2ubuntu6 binutils-s390x-linux-gnu_2.40-2ubuntu6 bsdextrautils_2.38.1-5ubuntu1 bsdutils_1:2.38.1-5ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 coreutils_9.1-1ubuntu2 cpp_4:12.2.0-3ubuntu1 cpp-12_12.3.0-1ubuntu1 dash_0.5.12-2ubuntu1 debconf_1.5.82 debhelper_13.11.4ubuntu3 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-python_5.20230510 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.22ubuntu1 dpkg-dev_1.21.22ubuntu1 dwz_0.15-1 e2fsprogs_1.47.0-1ubuntu1 fakeroot_1.31-1.2 file_1:5.44-3 findutils_4.9.0-4ubuntu1 fonts-urw-base35_20200910-7 g++_4:12.2.0-3ubuntu1 g++-12_12.3.0-1ubuntu1 gcc_4:12.2.0-3ubuntu1 gcc-12_12.3.0-1ubuntu1 gcc-12-base_12.3.0-1ubuntu1 gcc-13-base_13.1.0-2ubuntu2 gettext_0.21-12 gettext-base_0.21-12 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 gpgv_2.2.40-1.1ubuntu1 grep_3.8-5 groff-base_1.22.4-10 gzip_1.12-1ubuntu1 hostname_3.23+nmu1ubuntu1 init_1.65.2 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 kaptive_2.0.4-1 libacl1_2.3.1-3 libapparmor1_3.0.8-1ubuntu2 libapt-pkg6.0_2.7.0 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-3 libasan8_13.1.0-2ubuntu2 libassuan0_2.5.5-5 libatomic1_13.1.0-2ubuntu2 libattr1_1:2.5.1-4 libaudit-common_1:3.0.9-1 libaudit1_1:3.0.9-1 libbinutils_2.40-2ubuntu6 libblas3_3.11.0-2 libblkid1_2.38.1-5ubuntu1 libbrotli1_1.0.9-2build8 libbsd0_0.11.7-4 libbz2-1.0_1.0.8-5build1 libc-bin_2.37-0ubuntu2 libc-dev-bin_2.37-0ubuntu2 libc6_2.37-0ubuntu2 libc6-dev_2.37-0ubuntu2 libcap-ng0_0.8.3-1build2 libcap2_1:2.66-3ubuntu2 libcapnp-0.9.2_0.9.2-2 libcc1-0_13.1.0-2ubuntu2 libcom-err2_1.47.0-1ubuntu1 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libcryptsetup12_2:2.6.1-4ubuntu1 libctf-nobfd0_2.40-2ubuntu6 libctf0_2.40-2ubuntu6 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.267ubuntu1 libdebhelper-perl_13.11.4ubuntu3 libdeflate0_1.15-1 libdevmapper1.02.1_2:1.02.185-1ubuntu1 libdpkg-perl_1.21.22ubuntu1 libdw1_0.188-2.1 libelf1_0.188-2.1 libexpat1_2.5.0-1 libext2fs2_1.47.0-1ubuntu1 libfakeroot_1.31-1.2 libfdisk1_2.38.1-5ubuntu1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libfontenc1_1:1.1.4-1build3 libfreetype6_2.12.1+dfsg-5 libfribidi0_1.0.8-2.1ubuntu1 libgcc-12-dev_12.3.0-1ubuntu1 libgcc-s1_13.1.0-2ubuntu2 libgcrypt20_1.10.1-3ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_13.1.0-2ubuntu2 libglib2.0-0_2.76.2-1ubuntu1 libgmp10_2:6.2.1+dfsg1-1.1ubuntu1 libgnutls30_3.7.9-2ubuntu1 libgomp1_13.1.0-2ubuntu2 libgpg-error0_1.46-1 libgraphite2-3_1.3.14-1build2 libgsl27_2.7.1+dfsg-4 libgslcblas0_2.7.1+dfsg-4 libgssapi-krb5-2_1.20.1-2 libharfbuzz0b_6.0.0+dfsg-3build1 libhogweed6_3.8.1-2 libicu72_72.1-3ubuntu2 libidn2-0_2.3.3-1build1 libimagequant0_2.17.0-1 libip4tc2_1.8.7-1ubuntu7 libisl23_0.25-1 libitm1_13.1.0-2ubuntu2 libjansson4_2.14-2 libjbig0_2.1-6.1ubuntu1 libjpeg-turbo8_2.1.5-2ubuntu1 libjpeg8_8c-2ubuntu11 libjson-c5_0.16-2 libk5crypto3_1.20.1-2 libkeyutils1_1.6.3-2 libkmod2_30+20221128-1ubuntu1 libkrb5-3_1.20.1-2 libkrb5support0_1.20.1-2 liblapack3_3.11.0-2 liblcms2-2_2.14-2 liblmdb0_0.9.24-1build2 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblz4-1_1.9.4-1 liblzma5_5.4.1-0.2 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmbedcrypto7_2.28.3-1 libmbedtls14_2.28.3-1 libmbedx509-1_2.28.3-1 libmd0_1.0.4-2 libmount1_2.38.1-5ubuntu1 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libmurmurhash2_1.5-3 libncurses6_6.4-4 libncursesw6_6.4-4 libnettle8_3.8.1-2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libopenjp2-7_2.5.0-1build1 libp11-kit0_0.24.1-2ubuntu1 libpam-modules_1.5.2-6ubuntu1 libpam-modules-bin_1.5.2-6ubuntu1 libpam-runtime_1.5.2-6ubuntu1 libpam0g_1.5.2-6ubuntu1 libpcre2-8-0_10.42-1 libpcre3_2:8.39-15 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libpng16-16_1.6.39-2 libproc2-0_2:4.0.3-1ubuntu1 libprocps8_2:3.3.17-7ubuntu1 libpython3-stdlib_3.11.2-1 libpython3.11-minimal_3.11.3-1 libpython3.11-stdlib_3.11.3-1 libraqm0_0.10.1-1 libreadline8_8.2-1.3 libseccomp2_2.5.4-1ubuntu3 libselinux1_3.4-1build4 libsemanage-common_3.4-1build4 libsemanage2_3.4-1build4 libsepol2_3.4-2 libsmartcols1_2.38.1-5ubuntu1 libsqlite3-0_3.40.1-2 libss2_1.47.0-1ubuntu1 libssl3_3.0.8-1ubuntu2 libstdc++-12-dev_12.3.0-1ubuntu1 libstdc++6_13.1.0-2ubuntu2 libsub-override-perl_0.09-4 libsystemd-shared_252.5-2ubuntu3 libsystemd0_252.5-2ubuntu3 libtasn1-6_4.19.0-2 libtiff6_4.5.0-6ubuntu1 libtinfo6_6.4-4 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libubsan1_13.1.0-2ubuntu2 libuchardet0_0.0.7-1build2 libudev1_252.5-2ubuntu3 libunistring2_1.0-2 libuuid1_2.38.1-5ubuntu1 libwebp7_1.2.4-0.2 libwebpdemux2_1.2.4-0.2 libwebpmux3_1.2.4-0.2 libxau6_1:1.0.9-1build5 libxcb1_1.15-1 libxdmcp6_1:1.1.3-0ubuntu5 libxml2_2.9.14+dfsg-1.2 libxxhash0_0.8.1-1 libzstd1_1.5.4+dfsg2-5 linux-libc-dev_6.3.0-4.4 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.47.0-1ubuntu1 lsb-base_11.6 lto-disabled-list_41 m4_1.4.19-3 mailcap_3.70+nmu1ubuntu1 make_4.3-4.1build1 man-db_2.11.2-2 mash_2.3+dfsg-3build1 mawk_1.3.4.20200120-3.1 media-types_10.0.0 mime-support_3.66 mount_2.38.1-5ubuntu1 ncbi-blast+_2.12.0+ds-3build1 ncbi-data_6.1.20170106+dfsg1-10 ncurses-base_6.4-4 ncurses-bin_6.4-4 openssl_3.0.8-1ubuntu2 optipng_0.7.7-2build1 passwd_1:4.13+dfsg1-1ubuntu1 patch_2.7.6-7build2 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 pinentry-curses_1.2.1-1ubuntu1 pkgbinarymangler_153 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.3-1ubuntu1 python3_3.11.2-1 python3-biopython_1.80+dfsg-4build1 python3-distutils_3.11.3-2 python3-lib2to3_3.11.3-2 python3-minimal_3.11.2-1 python3-numpy_1:1.24.2-1 python3-pil_9.4.0-1.1build1 python3-pkg-resources_66.1.1-1 python3-renderpm_3.6.12-1build1 python3-reportlab_3.6.12-1build1 python3-reportlab-accel_3.6.12-1build1 python3-setuptools_66.1.1-1 python3.11_3.11.3-1 python3.11-minimal_3.11.3-1 readline-common_8.2-1.3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.17+nmu1 sgml-base_1.31 systemd_252.5-2ubuntu3 systemd-sysv_252.5-2ubuntu3 sysvinit-utils_3.06-4ubuntu1 tar_1.34+dfsg-1.2 tzdata_2023c-4exp1ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_35ubuntu1 util-linux_2.38.1-5ubuntu1 util-linux-extra_2.38.1-5ubuntu1 w3c-sgml-lib_1.3-3 x11-common_1:7.7+23ubuntu2 xfonts-encodings_1:1.0.5-0ubuntu2 xfonts-utils_1:7.7+6build2 xml-core_0.18+nmu1 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: kleborate Binary: kleborate, kleborate-examples Architecture: any all Version: 2.3.1-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/katholt/Kleborate Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/kleborate Vcs-Git: https://salsa.debian.org/med-team/kleborate.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, ncbi-blast+ , mash , kaptive Package-List: kleborate deb science optional arch=any kleborate-examples deb science optional arch=all Checksums-Sha1: c17b29c844df2a03880d376d0ef2aca16715af57 91335255 kleborate_2.3.1.orig.tar.gz fc580d9e2c38f21151677b3fc747a6c6e2facca0 5996392 kleborate_2.3.1-2.debian.tar.xz Checksums-Sha256: 81bd01f9c7db7ca1d6763571eddea616e4970d2420dab6dfa8a9b47aebb8a870 91335255 kleborate_2.3.1.orig.tar.gz 0dfe70cdc650e530d3fdad90d1196a23d13cf04a6990c8a656781a87e2bbf255 5996392 kleborate_2.3.1-2.debian.tar.xz Files: 6d39609923dd9932e0221108fb103481 91335255 kleborate_2.3.1.orig.tar.gz 45970d991da5a484fd90f8e378254345 5996392 kleborate_2.3.1-2.debian.tar.xz Dgit: 663fa9e0971c8922a23ef821ea68147ec7336073 debian archive/debian/2.3.1-2 https://git.dgit.debian.org/kleborate -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmRvZEAUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrkBg/+MxXWaKOnkoAT/vH7U0HPJzipeqcg deU/F0d0COj5ghuXmTxNED8ytqvf7+jX4PnZ1/IjLtaQfFmT/LuQxrxlndE4kpl6 ALYaBLh/1vvm2csDcftjS2b4/jz3vMf2xUC5Qk0XFDNlVtj8yFcxR1YjjAQzvXoa phIKT2cIjH2ysMdRz9f7blMs96rgXt5zie5ol2Sxjlz56IgtedaJ3PeBTvaKf4eU 0IZOUXzb4pfl3QrMCU3tt6G6MMgWP807b6bZPNmEgCO/SPodXQYZ2Tg7R8ugkuhz +VcnqAMj9qFvrzGFipYMhSOd/ecCEhxsPKn12+WjuXGGNrAMlhu2QS/0QzL9XCC2 Kf648zNfW2a5HTcd+gZ0BVE51lA1/jAfj5PQ1nOfdxJbmkl/rKbmB+DeBQ9sqFuJ PhDf1UXFniEzKTZ3pslH1iyhe2qHhgBWOO+juJ2l7D//sYLMJpE/3n9RV3KC2Ybb 4FAFyufv5GIlG7UrFNSahoGPXaAq+ljTOAQs3VnWBZwizWFosrRLSd4h4A6DJaKw 0JqhAb7DvySMWRz8Wf0ZNErPHg1m9srM+yfQWhWbOTOMEwLwIDLat4j++7T7g8nj ByTQ9wAae639oElKLgzuymsEd9yLyujTmjfqkIsX113FrY4/HcDre78OV1I/EQj2 0VnTvku75v7ZNoI= =2UkI -----END PGP SIGNATURE----- gpgv: Signature made Thu May 25 13:36:00 2023 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./kleborate_2.3.1-2.dsc: no acceptable signature found dpkg-source: info: extracting kleborate in /<> dpkg-source: info: unpacking kleborate_2.3.1.orig.tar.gz dpkg-source: info: unpacking kleborate_2.3.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3.patch dpkg-source: info: applying use_debian_installed_kaptive.patch dpkg-source: info: applying bigendian.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-26218150 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-26218150 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-26218150 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package kleborate dpkg-buildpackage: info: source version 2.3.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:275: python3.11 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-s390x' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:275: python3.11 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:275: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/rmpA.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/resBLAST.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/mlstBLAST.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/__init__.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/version.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/contig_stats.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/__main__.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/truncation.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/shv_mutations.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/species.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/misc.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/kaptive.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/blastn.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/help_formatter.py -> /<>/.pybuild/cpython3_3.11/build/kleborate running egg_info creating Kleborate.egg-info writing Kleborate.egg-info/PKG-INFO writing dependency_links to Kleborate.egg-info/dependency_links.txt writing entry points to Kleborate.egg-info/entry_points.txt writing requirements to Kleborate.egg-info/requires.txt writing top-level names to Kleborate.egg-info/top_level.txt writing manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'kleborate/ICEKp_references' warning: no directories found matching 'kaptive/reference_database' warning: no directories found matching 'kaptive/sample_data' adding license file 'LICENSE' writing manifest file 'Kleborate.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'kleborate.data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'kleborate.data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'kleborate.data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'kleborate.data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'kleborate.data.ICEKp_references' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'kleborate.data.ICEKp_references' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'kleborate.data.ICEKp_references' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'kleborate.data.ICEKp_references' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) creating /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/AbST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/CARD_AMR_clustered.csv -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/CARD_v3.1.13.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/CbST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/Klebsiella_pneumoniae.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/MgrB_and_PmrB.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/OmpK.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/QRDR_120.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/RmST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/SmST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/YbST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/clb_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/iro_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/iuc_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/kpneumoniae.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/rmpA2.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/rmp_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/species_mash_sketches.msh -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/wzi.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/wzi.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/ybt_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data creating /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp1.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp10.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp11.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp12.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp13.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp14.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp15.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp16.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp17.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp18.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp19.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp2.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp20.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp21.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp22.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp3.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp4.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp5.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp6.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp7.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp8.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp9.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references dh_auto_test -a -O--buildsystem=pybuild I: pybuild base:275: cd /<>/.pybuild/cpython3_3.11/build; python3.11 -m unittest discover -v /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. warnings.warn( test_ambiguous_bases_1 (test.test_contig_stats.TestContigStats.test_ambiguous_bases_1) ... ok test_ambiguous_bases_2 (test.test_contig_stats.TestContigStats.test_ambiguous_bases_2) ... ok test_ambiguous_bases_3 (test.test_contig_stats.TestContigStats.test_ambiguous_bases_3) ... ok test_ambiguous_bases_4 (test.test_contig_stats.TestContigStats.test_ambiguous_bases_4) ... ok test_count_1 (test.test_contig_stats.TestContigStats.test_count_1) ... ok test_count_2 (test.test_contig_stats.TestContigStats.test_count_2) ... ok test_longest_1 (test.test_contig_stats.TestContigStats.test_longest_1) ... ok test_longest_2 (test.test_contig_stats.TestContigStats.test_longest_2) ... ok test_n50_1 (test.test_contig_stats.TestContigStats.test_n50_1) ... ok test_n50_2 (test.test_contig_stats.TestContigStats.test_n50_2) ... ok test_qc_warnings_1 (test.test_contig_stats.TestContigStats.test_qc_warnings_1) ... ok test_qc_warnings_2 (test.test_contig_stats.TestContigStats.test_qc_warnings_2) ... ok test_qc_warnings_3 (test.test_contig_stats.TestContigStats.test_qc_warnings_3) ... ok test_qc_warnings_4 (test.test_contig_stats.TestContigStats.test_qc_warnings_4) ... ok test_qc_warnings_5 (test.test_contig_stats.TestContigStats.test_qc_warnings_5) ... ok test_qc_warnings_6 (test.test_contig_stats.TestContigStats.test_qc_warnings_6) ... ok test_qc_warnings_7 (test.test_contig_stats.TestContigStats.test_qc_warnings_7) ... ok test_qc_warnings_8 (test.test_contig_stats.TestContigStats.test_qc_warnings_8) ... ok test_total_size_1 (test.test_contig_stats.TestContigStats.test_total_size_1) ... ok test_total_size_2 (test.test_contig_stats.TestContigStats.test_total_size_2) ... ok test_total_size_3 (test.test_contig_stats.TestContigStats.test_total_size_3) ... ok test_total_size_4 (test.test_contig_stats.TestContigStats.test_total_size_4) ... ok test_iro_exact_1 (test.test_iro.TestIro.test_iro_exact_1) This test is an exact match for SmST1. ... ok test_iro_exact_33 (test.test_iro.TestIro.test_iro_exact_33) This test is an exact match for SmST33. ... ok test_iro_incomplete (test.test_iro.TestIro.test_iro_incomplete) This test is an exact match for only one allele. ... ok test_iro_inexact (test.test_iro.TestIro.test_iro_inexact) This test is an inexact match for SmST33. There are single base changes in iroC and in ... ok test_iro_missing_1 (test.test_iro.TestIro.test_iro_missing_1) This test is a match for SmST1, except that it's missing iroN. ... ok test_iro_novel (test.test_iro.TestIro.test_iro_novel) This test is an exact match for alleles, but an unknown combination. ... ok test_iro_random (test.test_iro.TestIro.test_iro_random) This test has just random sequence and should give no iro call. ... ok test_confidence_meets_threshold_01 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_01) ... ok test_confidence_meets_threshold_02 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_02) ... ok test_confidence_meets_threshold_03 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_03) ... ok test_confidence_meets_threshold_04 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_04) ... ok test_confidence_meets_threshold_05 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_05) ... ok test_confidence_meets_threshold_06 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_06) ... ok test_confidence_meets_threshold_07 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_07) ... ok test_confidence_meets_threshold_08 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_08) ... ok test_confidence_meets_threshold_09 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_09) ... ok test_confidence_meets_threshold_10 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_10) ... ok test_134 (test.test_mlst.TestMlst.test_134) ... ok test_83 (test.test_mlst.TestMlst.test_83) ... ok test_ba779 (test.test_mlst.TestMlst.test_ba779) ... ok test_chromosome_exact (test.test_mlst.TestMlst.test_chromosome_exact) This test is an exact match for ST23. ... ok test_chromosome_inexact (test.test_mlst.TestMlst.test_chromosome_inexact) This test is is one base off from ST23 (single substitution in mdh_1 of G to A). ... ok test_chromosome_random (test.test_mlst.TestMlst.test_chromosome_random) This test has just random sequence and should give no MLST call. ... ok test_kp_subspecies_1 (test.test_mlst.TestMlst.test_kp_subspecies_1) ... ok test_kp_subspecies_2 (test.test_mlst.TestMlst.test_kp_subspecies_2) ... ok test_kp_subspecies_3 (test.test_mlst.TestMlst.test_kp_subspecies_3) ... ok test_kp_subspecies_4 (test.test_mlst.TestMlst.test_kp_subspecies_4) ... ok test_kp_subspecies_5 (test.test_mlst.TestMlst.test_kp_subspecies_5) ... ok test_kp_subspecies_6 (test.test_mlst.TestMlst.test_kp_subspecies_6) ... ok test_kp_subspecies_7 (test.test_mlst.TestMlst.test_kp_subspecies_7) ... ok test_ozaenae (test.test_mlst.TestMlst.test_ozaenae) ... ok test_rhinoscleromatis (test.test_mlst.TestMlst.test_rhinoscleromatis) ... ok test_unknown_ST (test.test_mlst.TestMlst.test_unknown_ST) This test has exact matches for alleles but in an unknown ST combination ... ok test_res_01 (test.test_res_aac.TestResAac.test_res_01) ... /usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/__init__.py:519: ResourceWarning: unclosed file <_io.TextIOWrapper name='/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM62' mode='r' encoding='utf-8'> matrix = read(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_res_02 (test.test_res_aac.TestResAac.test_res_02) ... ok test_res_03 (test.test_res_aac.TestResAac.test_res_03) ... ok test_res_04 (test.test_res_aac.TestResAac.test_res_04) This is a tricky one (and the one which first highlighted the problem). The best bit-score ... ok test_res_05 (test.test_res_aac.TestResAac.test_res_05) Same as test_res_04, but with the hit on the other strand. ... ok test_exact_aa_match_1 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_1) Simple case: full protein sequence ending in a stop codon. ... ok test_exact_aa_match_2 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_2) These two seqs have a stop codon in the middle but still match exactly. ... ok test_exact_aa_match_3 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_3) These two seqs have a stop codon in the middle and mismatch after the stop. ... ok test_exact_aa_match_4 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_4) These two seqs have a stop codon in the middle and mismatch after the stop. ... ok test_exact_aa_match_5 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_5) These two seqs are non-multiple-of-three in length and match in their remainder. ... ok test_exact_aa_match_6 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_6) These two seqs are non-multiple-of-three in length and match in their remainder. ... ok test_exact_aa_match_7 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_7) These two seqs are non-multiple-of-three in length and don't match in their remainder. ... ok test_exact_aa_match_8 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_8) The first seq's protein sequence contains the second seq's protein sequence. ... ok test_res_01 (test.test_res_alleles.TestResAlleles.test_res_01) ... ok test_res_02 (test.test_res_alleles.TestResAlleles.test_res_02) ... ok test_res_03 (test.test_res_alleles.TestResAlleles.test_res_03) ... ok test_res_04 (test.test_res_alleles.TestResAlleles.test_res_04) ... ok test_res_05 (test.test_res_alleles.TestResAlleles.test_res_05) ... ok test_res_06 (test.test_res_alleles.TestResAlleles.test_res_06) ... ok test_res_07 (test.test_res_alleles.TestResAlleles.test_res_07) ... ok test_res_08 (test.test_res_alleles.TestResAlleles.test_res_08) ... ok test_res_09 (test.test_res_alleles.TestResAlleles.test_res_09) ... ok test_res_10 (test.test_res_alleles.TestResAlleles.test_res_10) ... ok test_res_11 (test.test_res_alleles.TestResAlleles.test_res_11) This test has the ABC-1 gene but with a stop codon in the middle. ... ok test_res_12 (test.test_res_alleles.TestResAlleles.test_res_12) This test has the ABC-1 gene but missing the first (start) codon. ... ok test_res_13 (test.test_res_alleles.TestResAlleles.test_res_13) This test has the ABC-1 gene but at only 50% coverage, so it goes to spurious hits. ... ok test_res_14 (test.test_res_alleles.TestResAlleles.test_res_14) I added this test to catch a weird BLAST-related bug where an exact amino acid match for ... ok test_res_15 (test.test_res_alleles.TestResAlleles.test_res_15) Same as the previous test, but with the nucleotide sequence reverse-complemented. ... ok test_res_16 (test.test_res_alleles.TestResAlleles.test_res_16) I added this test to catch a weird BLAST-related bug where an exact amino acid match for ... ok test_res_17 (test.test_res_alleles.TestResAlleles.test_res_17) Same as the previous test, but with the nucleotide sequence reverse-complemented. ... ok test_res_18 (test.test_res_alleles.TestResAlleles.test_res_18) This is the uncomplicated case for a OKP-B-6^ result (later tests cover more challenging ... ok test_res_19 (test.test_res_alleles.TestResAlleles.test_res_19) Same as the previous test, but with the nucleotide sequence reverse-complemented. ... ok test_res_20 (test.test_res_alleles.TestResAlleles.test_res_20) I added this test to catch a bug where there is an exact amino acid match but inexact ... ok test_res_21 (test.test_res_alleles.TestResAlleles.test_res_21) Same as the previous test, but with the nucleotide sequence reverse-complemented. ... ok test_res_22 (test.test_res_alleles.TestResAlleles.test_res_22) I added this test to catch a bug where there is an exact amino acid match but inexact ... ok test_res_23 (test.test_res_alleles.TestResAlleles.test_res_23) Same as the previous test, but with the nucleotide sequence reverse-complemented. ... ok test_both_genes_intact (test.test_res_mgrb_pmrb.TestResMgrBPmrB.test_both_genes_intact) ... ok test_mgrb_missing (test.test_res_mgrb_pmrb.TestResMgrBPmrB.test_mgrb_missing) ... ok test_mgrb_missing_non_kp_complex (test.test_res_mgrb_pmrb.TestResMgrBPmrB.test_mgrb_missing_non_kp_complex) Setting the Kp complex variable to False should turn off the MgrB/PmrB tests. ... ok test_pmrb_early_stop (test.test_res_mgrb_pmrb.TestResMgrBPmrB.test_pmrb_early_stop) This tests an early stop mutation (without a frameshift) in pmrB. ... ok test_pmrb_early_stop_SRR2098701 (test.test_res_mgrb_pmrb.TestResMgrBPmrB.test_pmrb_early_stop_SRR2098701) ... ok test_pmrb_frameshift (test.test_res_mgrb_pmrb.TestResMgrBPmrB.test_pmrb_frameshift) A frameshift in pmrB should cause an early stop and lead to a colisitin resistance call. ... ok test_both_genes_intact (test.test_res_omp.TestResOmp.test_both_genes_intact) ... ok test_ompk35_early_stop (test.test_res_omp.TestResOmp.test_ompk35_early_stop) This tests an early stop mutation (without a frameshift) in OmpK35. ... ok test_ompk35_frameshift (test.test_res_omp.TestResOmp.test_ompk35_frameshift) A frameshift in OmpK35 should cause an early stop and lead to a carbapenem resistance call. ... ok test_ompk36_missing (test.test_res_omp.TestResOmp.test_ompk36_missing) ... ok test_ompk36gd (test.test_res_omp.TestResOmp.test_ompk36gd) ... ok test_ompk36td (test.test_res_omp.TestResOmp.test_ompk36td) ... ok test_ompk36td_non_kp_complex (test.test_res_omp.TestResOmp.test_ompk36td_non_kp_complex) Setting the Kp complex variable to False should turn off the OmpK tests. ... ok test_gyra (test.test_res_qrdr.TestResGyrAParC.test_gyra) ... ok test_gyra_and_parc (test.test_res_qrdr.TestResGyrAParC.test_gyra_and_parc) ... ok test_gyra_and_parc_non_kp_complex (test.test_res_qrdr.TestResGyrAParC.test_gyra_and_parc_non_kp_complex) Setting the Kp complex variable to False should turn off the QRDR tests. ... ok test_no_mutations (test.test_res_qrdr.TestResGyrAParC.test_no_mutations) ... ok test_parc (test.test_res_qrdr.TestResGyrAParC.test_parc) ... ok test_tem (test.test_res_tem.TestResTem.test_tem) ... ok test_rmp_19 (test.test_rmp.TestRmp.test_rmp_19) This test is an exact match for RmST19, an ST without any truncated alleles. ... ok test_rmp_21 (test.test_rmp.TestRmp.test_rmp_21) This test is an exact match for RmST21, an ST with a truncated allele. ... ok test_rmp_missing_1 (test.test_rmp.TestRmp.test_rmp_missing_1) This test is a match for RmST1, except that it's missing rmpC. ... ok test_rmp_novel (test.test_rmp.TestRmp.test_rmp_novel) This test is an exact match for alleles, but an unknown combination. ... ok test_rmp_random (test.test_rmp.TestRmp.test_rmp_random) This test has just random sequence and should give no rmp call. ... ok test_rmpa2_exact (test.test_rmp.TestRmp.test_rmpa2_exact) This test has an exact match for rmpA2_1. ... ok test_rmpa2_exact_truncated (test.test_rmp.TestRmp.test_rmpa2_exact_truncated) This test has an exact match for rmpA2_7. ... ok test_rmpa2_inexact (test.test_rmp.TestRmp.test_rmpa2_inexact) This test has an inexact match for rmpA2_1. ... ok test_rmpa2_random (test.test_rmp.TestRmp.test_rmpa2_random) This test has just random sequence and should give no rmpA2 call. ... ok test_bla_class_01 (test.test_shv.TestShvMutations.test_bla_class_01) ... ok test_bla_class_02 (test.test_shv.TestShvMutations.test_bla_class_02) ... ok test_bla_class_03 (test.test_shv.TestShvMutations.test_bla_class_03) ... ok test_bla_class_04 (test.test_shv.TestShvMutations.test_bla_class_04) ... ok test_get_class_changing_mutations_01 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_01) ... ok test_get_class_changing_mutations_02 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_02) ... ok test_get_class_changing_mutations_03 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_03) ... ok test_get_class_changing_mutations_04 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_04) ... ok test_get_class_changing_mutations_05 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_05) ... ok test_get_class_changing_mutations_06 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_06) ... ok test_get_class_changing_mutations_07 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_07) ... ok test_get_class_changing_mutations_08 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_08) ... ok test_shv_01 (test.test_shv.TestShvMutations.test_shv_01) This test has an exact match for SHV-1. ... ok test_shv_02 (test.test_shv.TestShvMutations.test_shv_02) This test has a match for SHV-1 with a mutation at site 238 (G -> Y). This changes the ... ok test_shv_03 (test.test_shv.TestShvMutations.test_shv_03) Same as test 2, but the gene is on the reverse strand. ... ok test_shv_04 (test.test_shv.TestShvMutations.test_shv_04) This test has a match for SHV-1 with a mutation at site 50 (G -> Y). This doesn't change ... ok test_shv_05 (test.test_shv.TestShvMutations.test_shv_05) This test has an exact match for SHV-29. ... ok test_shv_06 (test.test_shv.TestShvMutations.test_shv_06) This test has SHV-29 plus an inhibition mutation. ... ok test_shv_07 (test.test_shv.TestShvMutations.test_shv_07) This test has SHV-1 with position 238 deleted. Since it's not in the omega loop, this isn't ... ok test_shv_08 (test.test_shv.TestShvMutations.test_shv_08) This test has SHV-1 with a synonymous mutation in the omega loop (so not reported). ... ok test_shv_09 (test.test_shv.TestShvMutations.test_shv_09) This test has SHV-1 with a nonsynonymous mutation in the omega loop (so it is reported). ... ok test_citrobacter (test.test_species.TestKpComplex.test_citrobacter) ... ok test_klebsiella_aerogenes (test.test_species.TestKpComplex.test_klebsiella_aerogenes) ... ok test_klebsiella_africanensis (test.test_species.TestKpComplex.test_klebsiella_africanensis) ... ok test_klebsiella_grimontii (test.test_species.TestKpComplex.test_klebsiella_grimontii) ... ok test_klebsiella_michiganensis (test.test_species.TestKpComplex.test_klebsiella_michiganensis) ... ok test_klebsiella_oxytoca (test.test_species.TestKpComplex.test_klebsiella_oxytoca) ... ok test_klebsiella_pneumoniae (test.test_species.TestKpComplex.test_klebsiella_pneumoniae) ... ok test_klebsiella_quasipneumoniae_subsp_quasipneumoniae (test.test_species.TestKpComplex.test_klebsiella_quasipneumoniae_subsp_quasipneumoniae) ... ok test_klebsiella_quasipneumoniae_subsp_similipneumoniae (test.test_species.TestKpComplex.test_klebsiella_quasipneumoniae_subsp_similipneumoniae) ... ok test_klebsiella_quasivariicola (test.test_species.TestKpComplex.test_klebsiella_quasivariicola) ... ok test_klebsiella_variicola_subsp_tropicalensis (test.test_species.TestKpComplex.test_klebsiella_variicola_subsp_tropicalensis) ... ok test_klebsiella_variicola_subsp_variicola (test.test_species.TestKpComplex.test_klebsiella_variicola_subsp_variicola) ... ok test_raoultella_ornithinolytica (test.test_species.TestKpComplex.test_raoultella_ornithinolytica) ... ok test_raoultella_planticola (test.test_species.TestKpComplex.test_raoultella_planticola) ... ok test_raoultella_terrigena (test.test_species.TestKpComplex.test_raoultella_terrigena) ... ok test_salmonella (test.test_species.TestKpComplex.test_salmonella) ... ok test_citrobacter (test.test_species.TestSpecies.test_citrobacter) ... ok test_klebsiella_aerogenes (test.test_species.TestSpecies.test_klebsiella_aerogenes) ... ok test_klebsiella_africana (test.test_species.TestSpecies.test_klebsiella_africana) ... ok test_klebsiella_grimontii (test.test_species.TestSpecies.test_klebsiella_grimontii) ... ok test_klebsiella_indica (test.test_species.TestSpecies.test_klebsiella_indica) ... ok test_klebsiella_michiganensis (test.test_species.TestSpecies.test_klebsiella_michiganensis) ... ok test_klebsiella_oxytoca (test.test_species.TestSpecies.test_klebsiella_oxytoca) ... ok test_klebsiella_pasteurii (test.test_species.TestSpecies.test_klebsiella_pasteurii) ... ok test_klebsiella_pneumoniae (test.test_species.TestSpecies.test_klebsiella_pneumoniae) ... ok test_klebsiella_quasipneumoniae_subsp_quasipneumoniae (test.test_species.TestSpecies.test_klebsiella_quasipneumoniae_subsp_quasipneumoniae) ... ok test_klebsiella_quasipneumoniae_subsp_similipneumoniae (test.test_species.TestSpecies.test_klebsiella_quasipneumoniae_subsp_similipneumoniae) ... ok test_klebsiella_quasivariicola (test.test_species.TestSpecies.test_klebsiella_quasivariicola) ... ok test_klebsiella_spallanzanii (test.test_species.TestSpecies.test_klebsiella_spallanzanii) ... ok test_klebsiella_variicola_subsp_tropicalensis (test.test_species.TestSpecies.test_klebsiella_variicola_subsp_tropicalensis) ... ok test_klebsiella_variicola_subsp_variicola (test.test_species.TestSpecies.test_klebsiella_variicola_subsp_variicola) ... ok test_raoultella_ornithinolytica (test.test_species.TestSpecies.test_raoultella_ornithinolytica) ... ok test_raoultella_planticola (test.test_species.TestSpecies.test_raoultella_planticola) ... ok test_raoultella_terrigena (test.test_species.TestSpecies.test_raoultella_terrigena) ... ok test_salmonella (test.test_species.TestSpecies.test_salmonella) ... ok test_yersinia_unknown (test.test_species.TestSpecies.test_yersinia_unknown) ... ok test_nothing (test.test_summary.TestResScore.test_nothing) ... ok test_res_counts_1 (test.test_summary.TestResScore.test_res_counts_1) ... ok test_res_counts_10 (test.test_summary.TestResScore.test_res_counts_10) Resistance-by-truncation should add to the class count but not to the gene count (because ... ok test_res_counts_11 (test.test_summary.TestResScore.test_res_counts_11) Spurious hits should not add to either the gene or class counts. ... ok test_res_counts_2 (test.test_summary.TestResScore.test_res_counts_2) ... ok test_res_counts_3 (test.test_summary.TestResScore.test_res_counts_3) Intrinsic Bla genes should not add to the counts. ... ok test_res_counts_4 (test.test_summary.TestResScore.test_res_counts_4) Bla genes in columns other than 'Bla_chr' (e.g. 'Bla_ESBL_acquired') should add to the ... ok test_res_counts_5 (test.test_summary.TestResScore.test_res_counts_5) Bla genes in columns other than 'Bla_chr' (e.g. 'Bla_acquired') should add to the counts. ... ok test_res_counts_6 (test.test_summary.TestResScore.test_res_counts_6) Omp gene truncations should not add to the gene or class counts. ... ok test_res_counts_7 (test.test_summary.TestResScore.test_res_counts_7) Mutations should add to the class count but not to the gene count (because that is for ... ok test_res_counts_8 (test.test_summary.TestResScore.test_res_counts_8) Mutations should add to the class count but not to the gene count (because that is for ... ok test_res_counts_9 (test.test_summary.TestResScore.test_res_counts_9) Mutations should add to the class count but not to the gene count (because that is for ... ok test_res_score_1 (test.test_summary.TestResScore.test_res_score_1) ... ok test_res_score_2 (test.test_summary.TestResScore.test_res_score_2) ... ok test_res_score_3 (test.test_summary.TestResScore.test_res_score_3) ... ok test_res_score_4 (test.test_summary.TestResScore.test_res_score_4) ... ok test_res_score_5 (test.test_summary.TestResScore.test_res_score_5) ... ok test_res_score_6 (test.test_summary.TestResScore.test_res_score_6) ... ok test_res_score_7 (test.test_summary.TestResScore.test_res_score_7) ... ok test_res_score_8 (test.test_summary.TestResScore.test_res_score_8) ... ok test_vir_score_1 (test.test_summary.TestResScore.test_vir_score_1) ... ok test_vir_score_2 (test.test_summary.TestResScore.test_vir_score_2) ... ok test_vir_score_3 (test.test_summary.TestResScore.test_vir_score_3) ... ok test_vir_score_4 (test.test_summary.TestResScore.test_vir_score_4) ... ok test_vir_score_5 (test.test_summary.TestResScore.test_vir_score_5) ... ok test_vir_score_6 (test.test_summary.TestResScore.test_vir_score_6) ... ok test_vir_score_7 (test.test_summary.TestResScore.test_vir_score_7) ... ok ---------------------------------------------------------------------- Ran 203 tests in 52.736s OK {'Sul_acquired': 'sul2^', 'Tet_acquired': '-', 'Bla_acquired': '-', 'Bla_inhR_acquired': '-', 'Bla_ESBL_acquired': '-', 'Bla_ESBL_inhR_acquired': '-', 'Bla_Carb_acquired': '-', 'Bla_chr': '-', 'SHV_mutations': '-', 'Omp_mutations': 'OmpK35-0%;OmpK36-0%', 'Col_mutations': 'MgrB-0%;PmrB-0%', 'Flq_mutations': '-', 'truncated_resistance_hits': '-', 'spurious_resistance_hits': '-'} {'Sul_acquired': '-', 'Tet_acquired': '-', 'Bla_acquired': '-', 'Bla_inhR_acquired': '-', 'Bla_ESBL_acquired': '-', 'Bla_ESBL_inhR_acquired': '-', 'Bla_Carb_acquired': '-', 'Bla_chr': 'OKP-B-6^', 'SHV_mutations': '-', 'Omp_mutations': 'OmpK35-0%;OmpK36-0%', 'Col_mutations': 'MgrB-0%;PmrB-0%', 'Flq_mutations': '-', 'truncated_resistance_hits': '-', 'spurious_resistance_hits': '-'} {'Sul_acquired': '-', 'Tet_acquired': '-', 'Bla_acquired': '-', 'Bla_inhR_acquired': '-', 'Bla_ESBL_acquired': '-', 'Bla_ESBL_inhR_acquired': '-', 'Bla_Carb_acquired': '-', 'Bla_chr': 'OKP-B-6^', 'SHV_mutations': '-', 'Omp_mutations': 'OmpK35-0%;OmpK36-0%', 'Col_mutations': 'MgrB-0%;PmrB-0%', 'Flq_mutations': '-', 'truncated_resistance_hits': '-', 'spurious_resistance_hits': '-'} {'Sul_acquired': '-', 'Tet_acquired': '-', 'Bla_acquired': '-', 'Bla_inhR_acquired': '-', 'Bla_ESBL_acquired': '-', 'Bla_ESBL_inhR_acquired': '-', 'Bla_Carb_acquired': '-', 'Bla_chr': 'OKP-B-6^', 'SHV_mutations': '-', 'Omp_mutations': 'OmpK35-0%;OmpK36-0%', 'Col_mutations': 'MgrB-0%;PmrB-0%', 'Flq_mutations': '-', 'truncated_resistance_hits': '-', 'spurious_resistance_hits': '-'} create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:275: /usr/bin/python3 setup.py install --root /<>/debian/tmp running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing Kleborate.egg-info/PKG-INFO writing dependency_links to Kleborate.egg-info/dependency_links.txt writing entry points to Kleborate.egg-info/entry_points.txt writing requirements to Kleborate.egg-info/requires.txt writing top-level names to Kleborate.egg-info/top_level.txt reading manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'kleborate/ICEKp_references' warning: no directories found matching 'kaptive/reference_database' warning: no directories found matching 'kaptive/sample_data' adding license file 'LICENSE' writing manifest file 'Kleborate.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'kleborate.data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'kleborate.data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'kleborate.data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'kleborate.data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'kleborate.data.ICEKp_references' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'kleborate.data.ICEKp_references' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'kleborate.data.ICEKp_references' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'kleborate.data.ICEKp_references' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running install_lib creating /<>/debian/tmp/usr creating /<>/debian/tmp/usr/lib creating /<>/debian/tmp/usr/lib/python3.11 creating /<>/debian/tmp/usr/lib/python3.11/dist-packages creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/rmpA.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/resBLAST.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/mlstBLAST.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/version.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/contig_stats.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/__main__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/truncation.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/misc.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/help_formatter.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/version.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/mlstBLAST.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/rmpA.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/species.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/__main__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/contig_stats.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/kaptive.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/blastn.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/shv_mutations.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/resBLAST.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/truncation.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/shv_mutations.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/species.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/misc.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/kaptive.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/blastn.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp5.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp16.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp21.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp22.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp15.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp1.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp20.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp9.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp18.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp12.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp8.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp13.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp2.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp4.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp19.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp14.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp3.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp10.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp11.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp17.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp7.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp6.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/MgrB_and_PmrB.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ybt_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/species_mash_sketches.msh -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/Klebsiella_pneumoniae.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/kpneumoniae.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/OmpK.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/iuc_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/wzi.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/CbST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/iro_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/AbST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/SmST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/clb_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/YbST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/CARD_v3.1.13.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/CARD_AMR_clustered.csv -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/rmpA2.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/rmp_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/RmST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/QRDR_120.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/wzi.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/help_formatter.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/rmpA.py to rmpA.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/resBLAST.py to resBLAST.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/mlstBLAST.py to mlstBLAST.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/version.py to version.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/contig_stats.py to contig_stats.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__main__.py to __main__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/truncation.py to truncation.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/shv_mutations.py to shv_mutations.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/species.py to species.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/misc.py to misc.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/kaptive.py to kaptive.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/blastn.py to blastn.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/help_formatter.py to help_formatter.cpython-311.pyc running install_egg_info Copying Kleborate.egg-info to /<>/debian/tmp/usr/lib/python3.11/dist-packages/Kleborate-2.2.0.egg-info Skipping SOURCES.txt running install_scripts Installing kleborate script to /<>/debian/tmp/usr/bin Building BLAST databases with makeblastdb: makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/CARD_v3.1.13.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/clb_alleles.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/rmpA2.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/iro_alleles.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/iuc_alleles.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/rmp_alleles.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/wzi.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ybt_alleles.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/MgrB_and_PmrB.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/OmpK.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/QRDR_120.fasta -blastdb_version 4  _ __ _ ______ ____ ____ _____ _______ ______ | | / /| | | ____| _ \ / __ \| __ \ /\|__ __| ____| | |/ / | | | |__ | |_) | | | | |__) | / \ | | | |__ | < | | | __| | _ <| | | | _ / / /\ \ | | | __| | |\ \ | |___| |____| |_) | |__| | | \ \/ ____ \| | | |____ |_| \_\|_____|______|____/ \____/|_| \_\/ \_\_| |______|  Kleborate is installed and ready to use! Example commands: kleborate --help kleborate -o results.txt -a *.fasta kleborate --resistance -o results.txt -a *.fasta kleborate --all -o results.txt -a *.fasta debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install # fasta.nin files will be (re)build at package installation time to not # contain build path. Other fasta.* are rebuilt by makeblastdb and may # cause inconsistencies in the package itself when makeblastdb is # upgraded and changes format, e.g. during a major operating system # upgrade. See Bug#1036743. find debian -name "*.fasta.nin" -delete find debian -name "*.fasta.ndb" -delete find debian -name "*.fasta.ntf" -delete make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -name "*.msh" -exec chmod -x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 153 pkgstriptranslations: processing kleborate (in debian/kleborate); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/kleborate/DEBIAN/control, package kleborate, directory debian/kleborate pkgstripfiles: Truncating usr/share/doc/kleborate/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package kleborate ... pkgstripfiles: No PNG files. dpkg-deb: building package 'kleborate' in '../kleborate_2.3.1-2_s390x.deb'. dpkg-genbuildinfo --build=any -O../kleborate_2.3.1-2_s390x.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../kleborate_2.3.1-2_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-05-25T17:25:59Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kleborate_2.3.1-2_s390x.changes: -------------------------------- Format: 1.8 Date: Thu, 25 May 2023 14:48:18 +0200 Source: kleborate Binary: kleborate Built-For-Profiles: noudeb Architecture: s390x Version: 2.3.1-2 Distribution: mantic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Étienne Mollier Description: kleborate - tool to screen Klebsiella genome assemblies Closes: 1036743 Changes: kleborate (2.3.1-2) unstable; urgency=medium . * d/{rules,*.prerm}: cleanup .fasta.{ndb,ntf} files kleborate binary package used to embed autogenerated files depending on makeblastdb version at both build time and postinst time. When there is a discrepancy of makeblastdb version between the package build and the package installation, for instance during a major operating system upgrade, there can be a mismatch of int the .fasta.ndb and .fasta.ntf files produced and expected. This change gets rid of the build time artifacts to solely rely on the post-installation artifacts, which will be more consistent and won't break the package consistency. (Closes: #1036743) Checksums-Sha1: 1161e2994030f3f6c6ef1cdc4f6b6bc3bce77937 7438 kleborate_2.3.1-2_s390x.buildinfo c441d5338349d3e349adecf71ca2b1ec4e2a9b9c 8719494 kleborate_2.3.1-2_s390x.deb Checksums-Sha256: 7488152a9f627dfb9b5f54eb7fc8989e9f77a11ad338f3d91a5d7ac8a0b6a028 7438 kleborate_2.3.1-2_s390x.buildinfo 0c70d1fcd33a32ce9d932e51625489e7d38626fbfe53f8c8fe4a6c9f9511749b 8719494 kleborate_2.3.1-2_s390x.deb Files: d499be1c5475960b26d293630c1bddb3 7438 science optional kleborate_2.3.1-2_s390x.buildinfo b976b97da9e2f1f03681fd3c09fdac2c 8719494 science optional kleborate_2.3.1-2_s390x.deb /<>/kleborate_2.3.1-2_s390x.changes.new could not be renamed to /<>/kleborate_2.3.1-2_s390x.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: kleborate Binary: kleborate Architecture: s390x Version: 2.3.1-2 Checksums-Md5: b976b97da9e2f1f03681fd3c09fdac2c 8719494 kleborate_2.3.1-2_s390x.deb Checksums-Sha1: c441d5338349d3e349adecf71ca2b1ec4e2a9b9c 8719494 kleborate_2.3.1-2_s390x.deb Checksums-Sha256: 0c70d1fcd33a32ce9d932e51625489e7d38626fbfe53f8c8fe4a6c9f9511749b 8719494 kleborate_2.3.1-2_s390x.deb Build-Origin: Ubuntu Build-Architecture: s390x Build-Date: Thu, 25 May 2023 17:25:59 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-12), autotools-dev (= 20220109.1), base-files (= 12.3ubuntu3), base-passwd (= 3.6.1), bash (= 5.2.15-2ubuntu1), binutils (= 2.40-2ubuntu6), binutils-common (= 2.40-2ubuntu6), binutils-s390x-linux-gnu (= 2.40-2ubuntu6), bsdextrautils (= 2.38.1-5ubuntu1), bsdutils (= 1:2.38.1-5ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 9.1-1ubuntu2), cpp (= 4:12.2.0-3ubuntu1), cpp-12 (= 12.3.0-1ubuntu1), dash (= 0.5.12-2ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.4ubuntu3), debianutils (= 5.7-0.4), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-python (= 5.20230510), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.22ubuntu1), dpkg-dev (= 1.21.22ubuntu1), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-4ubuntu1), fonts-urw-base35 (= 20200910-7), g++ (= 4:12.2.0-3ubuntu1), g++-12 (= 12.3.0-1ubuntu1), gcc (= 4:12.2.0-3ubuntu1), gcc-12 (= 12.3.0-1ubuntu1), gcc-12-base (= 12.3.0-1ubuntu1), gcc-13-base (= 13.1.0-2ubuntu2), gettext (= 0.21-12), gettext-base (= 0.21-12), grep (= 3.8-5), groff-base (= 1.22.4-10), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), kaptive (= 2.0.4-1), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.1.0-2ubuntu2), libatomic1 (= 13.1.0-2ubuntu2), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.0.9-1), libaudit1 (= 1:3.0.9-1), libbinutils (= 2.40-2ubuntu6), libblas3 (= 3.11.0-2), libblkid1 (= 2.38.1-5ubuntu1), libbrotli1 (= 1.0.9-2build8), libbsd0 (= 0.11.7-4), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.37-0ubuntu2), libc-dev-bin (= 2.37-0ubuntu2), libc6 (= 2.37-0ubuntu2), libc6-dev (= 2.37-0ubuntu2), libcap-ng0 (= 0.8.3-1build2), libcap2 (= 1:2.66-3ubuntu2), libcapnp-0.9.2 (= 0.9.2-2), libcc1-0 (= 13.1.0-2ubuntu2), libcom-err2 (= 1.47.0-1ubuntu1), libcrypt-dev (= 1:4.4.33-2), libcrypt1 (= 1:4.4.33-2), libctf-nobfd0 (= 2.40-2ubuntu6), libctf0 (= 2.40-2ubuntu6), libdb5.3 (= 5.3.28+dfsg2-1), libdebconfclient0 (= 0.267ubuntu1), libdebhelper-perl (= 13.11.4ubuntu3), libdeflate0 (= 1.15-1), libdpkg-perl (= 1.21.22ubuntu1), libdw1 (= 0.188-2.1), libelf1 (= 0.188-2.1), libexpat1 (= 2.5.0-1), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libfontenc1 (= 1:1.1.4-1build3), libfreetype6 (= 2.12.1+dfsg-5), libfribidi0 (= 1.0.8-2.1ubuntu1), libgcc-12-dev (= 12.3.0-1ubuntu1), libgcc-s1 (= 13.1.0-2ubuntu2), libgcrypt20 (= 1.10.1-3ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgfortran5 (= 13.1.0-2ubuntu2), libglib2.0-0 (= 2.76.2-1ubuntu1), libgmp10 (= 2:6.2.1+dfsg1-1.1ubuntu1), libgomp1 (= 13.1.0-2ubuntu2), libgpg-error0 (= 1.46-1), libgraphite2-3 (= 1.3.14-1build2), libgsl27 (= 2.7.1+dfsg-4), libgslcblas0 (= 2.7.1+dfsg-4), libgssapi-krb5-2 (= 1.20.1-2), libharfbuzz0b (= 6.0.0+dfsg-3build1), libicu72 (= 72.1-3ubuntu2), libimagequant0 (= 2.17.0-1), libisl23 (= 0.25-1), libitm1 (= 13.1.0-2ubuntu2), libjansson4 (= 2.14-2), libjbig0 (= 2.1-6.1ubuntu1), libjpeg-turbo8 (= 2.1.5-2ubuntu1), libjpeg8 (= 8c-2ubuntu11), libk5crypto3 (= 1.20.1-2), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-2), libkrb5support0 (= 1.20.1-2), liblapack3 (= 3.11.0-2), liblcms2-2 (= 2.14-2), liblmdb0 (= 0.9.24-1build2), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmbedcrypto7 (= 2.28.3-1), libmbedtls14 (= 2.28.3-1), libmbedx509-1 (= 2.28.3-1), libmd0 (= 1.0.4-2), libmount1 (= 2.38.1-5ubuntu1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libmurmurhash2 (= 1.5-3), libncursesw6 (= 6.4-4), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libopenjp2-7 (= 2.5.0-1build1), libpam-modules (= 1.5.2-6ubuntu1), libpam-modules-bin (= 1.5.2-6ubuntu1), libpam-runtime (= 1.5.2-6ubuntu1), libpam0g (= 1.5.2-6ubuntu1), libpcre2-8-0 (= 10.42-1), libpcre3 (= 2:8.39-15), libperl5.36 (= 5.36.0-7), libpipeline1 (= 1.5.7-1), libpng16-16 (= 1.6.39-2), libpython3-stdlib (= 3.11.2-1), libpython3.11-minimal (= 3.11.3-1), libpython3.11-stdlib (= 3.11.3-1), libraqm0 (= 0.10.1-1), libreadline8 (= 8.2-1.3), libseccomp2 (= 2.5.4-1ubuntu3), libselinux1 (= 3.4-1build4), libsmartcols1 (= 2.38.1-5ubuntu1), libsqlite3-0 (= 3.40.1-2), libssl3 (= 3.0.8-1ubuntu2), libstdc++-12-dev (= 12.3.0-1ubuntu1), libstdc++6 (= 13.1.0-2ubuntu2), libsub-override-perl (= 0.09-4), libsystemd0 (= 252.5-2ubuntu3), libtiff6 (= 4.5.0-6ubuntu1), libtinfo6 (= 6.4-4), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-5), libubsan1 (= 13.1.0-2ubuntu2), libuchardet0 (= 0.0.7-1build2), libudev1 (= 252.5-2ubuntu3), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-5ubuntu1), libwebp7 (= 1.2.4-0.2), libwebpdemux2 (= 1.2.4-0.2), libwebpmux3 (= 1.2.4-0.2), libxau6 (= 1:1.0.9-1build5), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxml2 (= 2.9.14+dfsg-1.2), libzstd1 (= 1.5.4+dfsg2-5), linux-libc-dev (= 6.3.0-4.4), login (= 1:4.13+dfsg1-1ubuntu1), lsb-base (= 11.6), lto-disabled-list (= 41), m4 (= 1.4.19-3), mailcap (= 3.70+nmu1ubuntu1), make (= 4.3-4.1build1), man-db (= 2.11.2-2), mash (= 2.3+dfsg-3build1), mawk (= 1.3.4.20200120-3.1), media-types (= 10.0.0), mime-support (= 3.66), ncbi-blast+ (= 2.12.0+ds-3build1), ncbi-data (= 6.1.20170106+dfsg1-10), ncurses-base (= 6.4-4), ncurses-bin (= 6.4-4), patch (= 2.7.6-7build2), perl (= 5.36.0-7), perl-base (= 5.36.0-7), perl-modules-5.36 (= 5.36.0-7), po-debconf (= 1.0.21+nmu1), python3 (= 3.11.2-1), python3-biopython (= 1.80+dfsg-4build1), python3-distutils (= 3.11.3-2), python3-lib2to3 (= 3.11.3-2), python3-minimal (= 3.11.2-1), python3-numpy (= 1:1.24.2-1), python3-pil (= 9.4.0-1.1build1), python3-pkg-resources (= 66.1.1-1), python3-renderpm (= 3.6.12-1build1), python3-reportlab (= 3.6.12-1build1), python3-reportlab-accel (= 3.6.12-1build1), python3-setuptools (= 66.1.1-1), python3.11 (= 3.11.3-1), python3.11-minimal (= 3.11.3-1), readline-common (= 8.2-1.3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.17+nmu1), sgml-base (= 1.31), sysvinit-utils (= 3.06-4ubuntu1), tar (= 1.34+dfsg-1.2), usrmerge (= 35ubuntu1), util-linux (= 2.38.1-5ubuntu1), util-linux-extra (= 2.38.1-5ubuntu1), w3c-sgml-lib (= 1.3-3), x11-common (= 1:7.7+23ubuntu2), xfonts-encodings (= 1:1.0.5-0ubuntu2), xfonts-utils (= 1:7.7+6build2), xml-core (= 0.18+nmu1), xz-utils (= 5.4.1-0.2), zlib1g (= 1:1.2.13.dfsg-1ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1685018898" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kleborate_2.3.1-2_s390x.deb --------------------------- new Debian package, version 2.0. size 8719494 bytes: control archive=3812 bytes. 1035 bytes, 23 lines control 9044 bytes, 93 lines md5sums 717 bytes, 36 lines * postinst #!/bin/sh 768 bytes, 34 lines * prerm #!/bin/sh Package: kleborate Version: 2.3.1-2 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 61970 Depends: python3-biopython, python3:any, ncbi-blast+, mash, kaptive, kaptive-data, python3-distutils Section: science Priority: optional Homepage: https://github.com/katholt/Kleborate Description: tool to screen Klebsiella genome assemblies Kleborate is a tool to screen Klebsiella genome assemblies for: . * MLST sequence type * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.) * ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb) * virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2) * antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive drwxr-xr-x root/root 0 2023-05-25 12:48 ./ drwxr-xr-x root/root 0 2023-05-25 12:48 ./usr/ drwxr-xr-x root/root 0 2023-05-25 12:48 ./usr/bin/ -rwxr-xr-x root/root 968 2023-05-25 12:48 ./usr/bin/kleborate drwxr-xr-x root/root 0 2023-05-25 12:48 ./usr/lib/ drwxr-xr-x root/root 0 2023-05-25 12:48 ./usr/lib/python3/ drwxr-xr-x root/root 0 2023-05-25 12:48 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2023-05-25 12:48 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/ -rw-r--r-- root/root 3043 2023-05-25 12:48 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2023-05-25 12:48 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/dependency_links.txt -rw-r--r-- root/root 54 2023-05-25 12:48 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/entry_points.txt -rw-r--r-- root/root 1 2023-05-25 12:48 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/not-zip-safe -rw-r--r-- root/root 0 2023-05-25 12:48 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/requires.txt -rw-r--r-- root/root 18 2023-05-25 12:48 ./usr/lib/python3/dist-packages/Kleborate-2.2.0.egg-info/top_level.txt drwxr-xr-x root/root 0 2023-05-25 12:48 ./usr/lib/python3/dist-packages/kleborate/ -rw-r--r-- root/root 0 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/__init__.py -rw-r--r-- root/root 27543 2023-05-25 12:48 ./usr/lib/python3/dist-packages/kleborate/__main__.py -rw-r--r-- root/root 5846 2023-05-25 12:48 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./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ -rw-r--r-- root/root 159849 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp1.embl -rw-r--r-- root/root 288072 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp10.embl -rw-r--r-- root/root 200467 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp11.embl -rw-r--r-- root/root 209427 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp12.embl -rw-r--r-- root/root 135487 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp13.embl -rw-r--r-- root/root 156338 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp14.embl -rw-r--r-- root/root 98000 2023-01-23 03:28 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp15.gff -rw-r--r-- root/root 76259 2023-01-23 03:28 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+------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: 365132 Build-Time: 77 Distribution: mantic-proposed Host Architecture: s390x Install-Time: 45 Job: kleborate_2.3.1-2.dsc Machine Architecture: s390x Package: kleborate Package-Time: 126 Source-Version: 2.3.1-2 Space: 365132 Status: successful Version: 2.3.1-2 -------------------------------------------------------------------------------- Finished at 2023-05-25T17:25:59Z Build needed 00:02:06, 365132k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=mantic --arch=s390x PACKAGEBUILD-26218150 Scanning for processes to kill in build PACKAGEBUILD-26218150