https://launchpad.net/ubuntu/+source/kleborate/2.3.2-1/+build/26436019 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-009 5.4.0-153-generic #170-Ubuntu SMP Fri Jun 16 13:43:01 UTC 2023 s390x Buildd toolchain package versions: launchpad-buildd_234~642~ubuntu20.04.1 python3-lpbuildd_234~642~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 20 Jul 05:11:56 ntpdate[1899]: adjust time server 10.211.37.1 offset 0.000386 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=mantic --arch=s390x PACKAGEBUILD-26436019 --image-type chroot /home/buildd/filecache-default/22b7ec405c1fe881d1e0795ebcfd3bff662be15c Creating target for build PACKAGEBUILD-26436019 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=mantic --arch=s390x PACKAGEBUILD-26436019 Starting target for build PACKAGEBUILD-26436019 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=mantic --arch=s390x PACKAGEBUILD-26436019 'deb http://ftpmaster.internal/ubuntu mantic main universe' 'deb http://ftpmaster.internal/ubuntu mantic-security main universe' 'deb http://ftpmaster.internal/ubuntu mantic-updates main universe' 'deb http://ftpmaster.internal/ubuntu mantic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-26436019 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=mantic --arch=s390x PACKAGEBUILD-26436019 Updating target for build PACKAGEBUILD-26436019 Get:1 http://ftpmaster.internal/ubuntu mantic InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu mantic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu mantic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu mantic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main s390x Packages [1329 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/universe s390x Packages [13.9 MB] Get:8 http://ftpmaster.internal/ubuntu mantic/universe Translation-en [5957 kB] Get:9 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x Packages [106 kB] Get:10 http://ftpmaster.internal/ubuntu mantic-proposed/main Translation-en [40.3 kB] Get:11 http://ftpmaster.internal/ubuntu mantic-proposed/universe s390x Packages [335 kB] Get:12 http://ftpmaster.internal/ubuntu mantic-proposed/universe Translation-en [142 kB] Fetched 22.9 MB in 6s (3931 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-12 libstdc++-12-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-13 g++-13 gcc-13 gcc-13-base libgcc-13-dev libproc2-0 libsframe1 libstdc++-13-dev systemd-dev The following packages will be upgraded: adduser advancecomp apt base-files bash binutils binutils-common binutils-s390x-linux-gnu bsdutils build-essential ca-certificates coreutils cpp cpp-12 dash debconf debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-12 gcc gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv grep hostname init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfakeroot libfdisk1 libgcc-12-dev libgcc-s1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblzma5 libmd0 libmount1 libmpfr6 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev logsave lsb-base lto-disabled-list mawk mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.36 pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tar tzdata usrmerge util-linux util-linux-extra xz-utils zlib1g 143 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 261 MB of archives. After this operation, 517 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu mantic/main s390x libcrypt-dev s390x 1:4.4.35-1 [114 kB] Get:2 http://ftpmaster.internal/ubuntu mantic/main s390x libc6-dev s390x 2.37-0ubuntu2 [1511 kB] Get:3 http://ftpmaster.internal/ubuntu mantic/main s390x libc-dev-bin s390x 2.37-0ubuntu2 [19.6 kB] Get:4 http://ftpmaster.internal/ubuntu mantic/main s390x libcrypt1 s390x 1:4.4.35-1 [83.8 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main s390x linux-libc-dev s390x 6.3.0-7.7 [1539 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main s390x libc6 s390x 2.37-0ubuntu2 [2684 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/main s390x libc-bin s390x 2.37-0ubuntu2 [599 kB] Get:8 http://ftpmaster.internal/ubuntu mantic/main s390x gcc-13-base s390x 13.1.0-8ubuntu1 [42.3 kB] Get:9 http://ftpmaster.internal/ubuntu mantic/main s390x libgcc-s1 s390x 13.1.0-8ubuntu1 [35.8 kB] Get:10 http://ftpmaster.internal/ubuntu mantic/main s390x base-files s390x 13ubuntu1 [74.0 kB] Get:11 http://ftpmaster.internal/ubuntu mantic/main s390x debianutils s390x 5.8-1 [103 kB] Get:12 http://ftpmaster.internal/ubuntu mantic/main s390x bash s390x 5.2.15-2ubuntu1 [786 kB] Get:13 http://ftpmaster.internal/ubuntu mantic/main s390x bsdutils s390x 1:2.38.1-5ubuntu2 [90.3 kB] Get:14 http://ftpmaster.internal/ubuntu mantic/main s390x coreutils s390x 9.1-1ubuntu2 [1390 kB] Get:15 http://ftpmaster.internal/ubuntu mantic/main s390x liblzma5 s390x 5.4.1-0.2 [124 kB] Get:16 http://ftpmaster.internal/ubuntu mantic/main s390x libzstd1 s390x 1.5.5+dfsg2-1ubuntu2 [273 kB] Get:17 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libgcrypt20 s390x 1.10.2-2ubuntu1 [513 kB] Get:18 http://ftpmaster.internal/ubuntu mantic/main s390x libstdc++6 s390x 13.1.0-8ubuntu1 [876 kB] Get:19 http://ftpmaster.internal/ubuntu mantic/main s390x libacl1 s390x 2.3.1-3 [16.5 kB] Get:20 http://ftpmaster.internal/ubuntu mantic/main s390x libapparmor1 s390x 3.0.8-1ubuntu4 [46.3 kB] Get:21 http://ftpmaster.internal/ubuntu mantic/main s390x libaudit-common all 1:3.1.1-1 [5426 B] Get:22 http://ftpmaster.internal/ubuntu mantic/main s390x libcap-ng0 s390x 0.8.3-1build2 [15.1 kB] Get:23 http://ftpmaster.internal/ubuntu mantic/main s390x libaudit1 s390x 1:3.1.1-1 [46.2 kB] Get:24 http://ftpmaster.internal/ubuntu mantic/main s390x libblkid1 s390x 2.38.1-5ubuntu2 [107 kB] Get:25 http://ftpmaster.internal/ubuntu mantic/main s390x libcap2 s390x 1:2.66-4ubuntu1 [29.5 kB] Get:26 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libip4tc2 s390x 1.8.9-2ubuntu1 [22.0 kB] Get:27 http://ftpmaster.internal/ubuntu mantic/main s390x libperl5.36 s390x 5.36.0-7ubuntu1 [4717 kB] Get:28 http://ftpmaster.internal/ubuntu mantic/main s390x perl s390x 5.36.0-7ubuntu1 [235 kB] Get:29 http://ftpmaster.internal/ubuntu mantic/main s390x perl-base s390x 5.36.0-7ubuntu1 [1716 kB] Get:30 http://ftpmaster.internal/ubuntu mantic/main s390x perl-modules-5.36 all 5.36.0-7ubuntu1 [2984 kB] Get:31 http://ftpmaster.internal/ubuntu mantic/main s390x libdb5.3 s390x 5.3.28+dfsg2-1 [707 kB] Get:32 http://ftpmaster.internal/ubuntu mantic/main s390x zlib1g s390x 1:1.2.13.dfsg-1ubuntu4 [65.6 kB] Get:33 http://ftpmaster.internal/ubuntu mantic/main s390x debconf all 1.5.82 [125 kB] Get:34 http://ftpmaster.internal/ubuntu mantic/main s390x libssl3 s390x 3.0.9-1ubuntu1 [1575 kB] Get:35 http://ftpmaster.internal/ubuntu mantic/main s390x libkmod2 s390x 30+20221128-1ubuntu1 [48.1 kB] Get:36 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libpcre2-8-0 s390x 10.42-2 [210 kB] Get:37 http://ftpmaster.internal/ubuntu mantic/main s390x libselinux1 s390x 3.5-1 [77.6 kB] Get:38 http://ftpmaster.internal/ubuntu mantic/main s390x libmount1 s390x 2.38.1-5ubuntu2 [118 kB] Get:39 http://ftpmaster.internal/ubuntu mantic/main s390x libpam0g s390x 1.5.2-6ubuntu1 [64.8 kB] Get:40 http://ftpmaster.internal/ubuntu mantic/main s390x libseccomp2 s390x 2.5.4-1ubuntu3 [49.1 kB] Get:41 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x systemd-sysv s390x 253.5-1ubuntu1 [11.5 kB] Get:42 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x systemd s390x 253.5-1ubuntu1 [3076 kB] Get:43 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libsystemd-shared s390x 253.5-1ubuntu1 [1902 kB] Get:44 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x systemd-dev all 253.5-1ubuntu1 [78.5 kB] Get:45 http://ftpmaster.internal/ubuntu mantic/main s390x libargon2-1 s390x 0~20190702+dfsg-3 [50.4 kB] Get:46 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libudev1 s390x 253.5-1ubuntu1 [162 kB] Get:47 http://ftpmaster.internal/ubuntu mantic/main s390x libdevmapper1.02.1 s390x 2:1.02.185-2ubuntu1 [141 kB] Get:48 http://ftpmaster.internal/ubuntu mantic/main s390x libuuid1 s390x 2.38.1-5ubuntu2 [32.5 kB] Get:49 http://ftpmaster.internal/ubuntu mantic/main s390x libcryptsetup12 s390x 2:2.6.1-4ubuntu1 [229 kB] Get:50 http://ftpmaster.internal/ubuntu mantic/main s390x libfdisk1 s390x 2.38.1-5ubuntu2 [141 kB] Get:51 http://ftpmaster.internal/ubuntu mantic/main s390x libp11-kit0 s390x 0.24.1-2ubuntu1 [249 kB] Get:52 http://ftpmaster.internal/ubuntu mantic/main s390x mount s390x 2.38.1-5ubuntu2 [112 kB] Get:53 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libsystemd0 s390x 253.5-1ubuntu1 [413 kB] Get:54 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libapt-pkg6.0 s390x 2.7.2 [874 kB] Get:55 http://ftpmaster.internal/ubuntu mantic/main s390x tar s390x 1.34+dfsg-1.2ubuntu1 [289 kB] Get:56 http://ftpmaster.internal/ubuntu mantic/main s390x dpkg s390x 1.21.22ubuntu1 [1380 kB] Get:57 http://ftpmaster.internal/ubuntu mantic/main s390x dash s390x 0.5.12-2ubuntu1 [88.8 kB] Get:58 http://ftpmaster.internal/ubuntu mantic/main s390x diffutils s390x 1:3.8-4 [177 kB] Get:59 http://ftpmaster.internal/ubuntu mantic/main s390x findutils s390x 4.9.0-5 [297 kB] Get:60 http://ftpmaster.internal/ubuntu mantic/main s390x grep s390x 3.11-1 [172 kB] Get:61 http://ftpmaster.internal/ubuntu mantic/main s390x hostname s390x 3.23+nmu1ubuntu1 [10.8 kB] Get:62 http://ftpmaster.internal/ubuntu mantic/main s390x libncurses6 s390x 6.4+20230625-1 [111 kB] Get:63 http://ftpmaster.internal/ubuntu mantic/main s390x libncursesw6 s390x 6.4+20230625-1 [144 kB] Get:64 http://ftpmaster.internal/ubuntu mantic/main s390x libtinfo6 s390x 6.4+20230625-1 [106 kB] Get:65 http://ftpmaster.internal/ubuntu mantic/main s390x ncurses-bin s390x 6.4+20230625-1 [186 kB] Get:66 http://ftpmaster.internal/ubuntu mantic/main s390x sed s390x 4.9-1 [193 kB] Get:67 http://ftpmaster.internal/ubuntu mantic/main s390x libsmartcols1 s390x 2.38.1-5ubuntu2 [59.2 kB] Get:68 http://ftpmaster.internal/ubuntu mantic/main s390x util-linux-extra s390x 2.38.1-5ubuntu2 [80.2 kB] Get:69 http://ftpmaster.internal/ubuntu mantic/main s390x util-linux s390x 2.38.1-5ubuntu2 [1065 kB] Get:70 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x init-system-helpers all 1.65.2ubuntu1 [38.7 kB] Get:71 http://ftpmaster.internal/ubuntu mantic/main s390x ncurses-base all 6.4+20230625-1 [24.1 kB] Get:72 http://ftpmaster.internal/ubuntu mantic/main s390x sysvinit-utils s390x 3.06-4ubuntu1 [33.1 kB] Get:73 http://ftpmaster.internal/ubuntu mantic/main s390x lsb-base all 11.6 [4606 B] Get:74 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x adduser all 3.137ubuntu1 [101 kB] Get:75 http://ftpmaster.internal/ubuntu mantic/main s390x gpgv s390x 2.2.40-1.1ubuntu1 [136 kB] Get:76 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libgmp10 s390x 2:6.2.1+dfsg1-1.1ubuntu2 [269 kB] Get:77 http://ftpmaster.internal/ubuntu mantic/main s390x libidn2-0 s390x 2.3.4-1 [109 kB] Get:78 http://ftpmaster.internal/ubuntu mantic/main s390x libtasn1-6 s390x 4.19.0-3 [43.9 kB] Get:79 http://ftpmaster.internal/ubuntu mantic/main s390x libgnutls30 s390x 3.7.9-2ubuntu1 [904 kB] Get:80 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x apt s390x 2.7.2 [1319 kB] Get:81 http://ftpmaster.internal/ubuntu mantic/main s390x libpam-modules-bin s390x 1.5.2-6ubuntu1 [48.2 kB] Get:82 http://ftpmaster.internal/ubuntu mantic/main s390x libpam-modules s390x 1.5.2-6ubuntu1 [280 kB] Get:83 http://ftpmaster.internal/ubuntu mantic/main s390x logsave s390x 1.47.0-1ubuntu2 [21.7 kB] Get:84 http://ftpmaster.internal/ubuntu mantic/main s390x libext2fs2 s390x 1.47.0-1ubuntu2 [220 kB] Get:85 http://ftpmaster.internal/ubuntu mantic/main s390x e2fsprogs s390x 1.47.0-1ubuntu2 [588 kB] Get:86 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x init s390x 1.65.2ubuntu1 [5508 B] Get:87 http://ftpmaster.internal/ubuntu mantic/main s390x libattr1 s390x 1:2.5.1-4 [12.4 kB] Get:88 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libdebconfclient0 s390x 0.270ubuntu1 [11.1 kB] Get:89 http://ftpmaster.internal/ubuntu mantic/main s390x libmd0 s390x 1.1.0-1 [23.4 kB] Get:90 http://ftpmaster.internal/ubuntu mantic/main s390x libpam-runtime all 1.5.2-6ubuntu1 [41.5 kB] Get:91 http://ftpmaster.internal/ubuntu mantic/main s390x libsemanage-common all 3.5-1 [9890 B] Get:92 http://ftpmaster.internal/ubuntu mantic/main s390x libsepol2 s390x 3.5-1 [283 kB] Get:93 http://ftpmaster.internal/ubuntu mantic/main s390x libsemanage2 s390x 3.5-1 [88.4 kB] Get:94 http://ftpmaster.internal/ubuntu mantic/main s390x usrmerge all 35ubuntu1 [58.2 kB] Get:95 http://ftpmaster.internal/ubuntu mantic/main s390x libcom-err2 s390x 1.47.0-1ubuntu2 [22.1 kB] Get:96 http://ftpmaster.internal/ubuntu mantic/main s390x libproc2-0 s390x 2:4.0.3-1ubuntu1 [52.0 kB] Get:97 http://ftpmaster.internal/ubuntu mantic/main s390x libss2 s390x 1.47.0-1ubuntu2 [16.6 kB] Get:98 http://ftpmaster.internal/ubuntu mantic/main s390x mawk s390x 1.3.4.20230525-1 [109 kB] Get:99 http://ftpmaster.internal/ubuntu mantic/main s390x procps s390x 2:4.0.3-1ubuntu1 [605 kB] Get:100 http://ftpmaster.internal/ubuntu mantic/main s390x sensible-utils all 0.0.20 [19.6 kB] Get:101 http://ftpmaster.internal/ubuntu mantic/main s390x openssl s390x 3.0.9-1ubuntu1 [1174 kB] Get:102 http://ftpmaster.internal/ubuntu mantic/main s390x ca-certificates all 20230311ubuntu1 [152 kB] Get:103 http://ftpmaster.internal/ubuntu mantic/main s390x libgssapi-krb5-2 s390x 1.20.1-2 [136 kB] Get:104 http://ftpmaster.internal/ubuntu mantic/main s390x libkrb5-3 s390x 1.20.1-2 [340 kB] Get:105 http://ftpmaster.internal/ubuntu mantic/main s390x libkrb5support0 s390x 1.20.1-2 [32.6 kB] Get:106 http://ftpmaster.internal/ubuntu mantic/main s390x libk5crypto3 s390x 1.20.1-2 [82.6 kB] Get:107 http://ftpmaster.internal/ubuntu mantic/main s390x readline-common all 8.2-1.3 [55.7 kB] Get:108 http://ftpmaster.internal/ubuntu mantic/main s390x libreadline8 s390x 8.2-1.3 [151 kB] Get:109 http://ftpmaster.internal/ubuntu mantic/main s390x libsqlite3-0 s390x 3.42.0-1 [657 kB] Get:110 http://ftpmaster.internal/ubuntu mantic/main s390x tzdata all 2023c-7ubuntu1 [272 kB] Get:111 http://ftpmaster.internal/ubuntu mantic/main s390x libpng16-16 s390x 1.6.40-1 [183 kB] Get:112 http://ftpmaster.internal/ubuntu mantic/main s390x xz-utils s390x 5.4.1-0.2 [270 kB] Get:113 http://ftpmaster.internal/ubuntu mantic/main s390x advancecomp s390x 2.5-1 [174 kB] Get:114 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libctf0 s390x 2.40.90.20230714-2ubuntu1 [97.8 kB] Get:115 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libctf-nobfd0 s390x 2.40.90.20230714-2ubuntu1 [98.9 kB] Get:116 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x binutils-s390x-linux-gnu s390x 2.40.90.20230714-2ubuntu1 [2274 kB] Get:117 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libbinutils s390x 2.40.90.20230714-2ubuntu1 [452 kB] Get:118 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x binutils s390x 2.40.90.20230714-2ubuntu1 [3052 B] Get:119 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x binutils-common s390x 2.40.90.20230714-2ubuntu1 [228 kB] Get:120 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libsframe1 s390x 2.40.90.20230714-2ubuntu1 [13.9 kB] Get:121 http://ftpmaster.internal/ubuntu mantic/main s390x libisl23 s390x 0.26-3 [722 kB] Get:122 http://ftpmaster.internal/ubuntu mantic/main s390x libmpfr6 s390x 4.2.0-1 [278 kB] Get:123 http://ftpmaster.internal/ubuntu mantic/main s390x cpp-13 s390x 13.1.0-8ubuntu1 [50.7 MB] Get:124 http://ftpmaster.internal/ubuntu mantic/main s390x g++ s390x 4:13.1.0-4ubuntu2 [1116 B] Get:125 http://ftpmaster.internal/ubuntu mantic/main s390x gcc s390x 4:13.1.0-4ubuntu2 [5170 B] Get:126 http://ftpmaster.internal/ubuntu mantic/main s390x cpp s390x 4:13.1.0-4ubuntu2 [28.9 kB] Get:127 http://ftpmaster.internal/ubuntu mantic/main s390x libcc1-0 s390x 13.1.0-8ubuntu1 [50.3 kB] Get:128 http://ftpmaster.internal/ubuntu mantic/main s390x libgomp1 s390x 13.1.0-8ubuntu1 [146 kB] Get:129 http://ftpmaster.internal/ubuntu mantic/main s390x libitm1 s390x 13.1.0-8ubuntu1 [31.3 kB] Get:130 http://ftpmaster.internal/ubuntu mantic/main s390x libatomic1 s390x 13.1.0-8ubuntu1 [9382 B] Get:131 http://ftpmaster.internal/ubuntu mantic/main s390x libasan8 s390x 13.1.0-8ubuntu1 [2844 kB] Get:132 http://ftpmaster.internal/ubuntu mantic/main s390x libubsan1 s390x 13.1.0-8ubuntu1 [1112 kB] Get:133 http://ftpmaster.internal/ubuntu mantic/main s390x libgcc-13-dev s390x 13.1.0-8ubuntu1 [999 kB] Get:134 http://ftpmaster.internal/ubuntu mantic/main s390x gcc-13 s390x 13.1.0-8ubuntu1 [58.2 MB] Get:135 http://ftpmaster.internal/ubuntu mantic/main s390x libstdc++-13-dev s390x 13.1.0-8ubuntu1 [2453 kB] Get:136 http://ftpmaster.internal/ubuntu mantic/main s390x g++-13 s390x 13.1.0-8ubuntu1 [55.7 MB] Get:137 http://ftpmaster.internal/ubuntu mantic/main s390x dpkg-dev all 1.21.22ubuntu1 [1118 kB] Get:138 http://ftpmaster.internal/ubuntu mantic/main s390x libdpkg-perl all 1.21.22ubuntu1 [247 kB] Get:139 http://ftpmaster.internal/ubuntu mantic/main s390x lto-disabled-list all 41 [12.4 kB] Get:140 http://ftpmaster.internal/ubuntu mantic/main s390x build-essential s390x 12.10ubuntu1 [4930 B] Get:141 http://ftpmaster.internal/ubuntu mantic/universe s390x g++-12 s390x 12.3.0-6ubuntu1 [9455 kB] Get:142 http://ftpmaster.internal/ubuntu mantic/universe s390x gcc-12 s390x 12.3.0-6ubuntu1 [16.2 MB] Get:143 http://ftpmaster.internal/ubuntu mantic/main s390x libstdc++-12-dev s390x 12.3.0-6ubuntu1 [2207 kB] Get:144 http://ftpmaster.internal/ubuntu mantic/main s390x libgcc-12-dev s390x 12.3.0-6ubuntu1 [853 kB] Get:145 http://ftpmaster.internal/ubuntu mantic/universe s390x cpp-12 s390x 12.3.0-6ubuntu1 [8178 kB] Get:146 http://ftpmaster.internal/ubuntu mantic/main s390x gcc-12-base s390x 12.3.0-6ubuntu1 [43.1 kB] Get:147 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libfakeroot s390x 1.32.1-1 [31.0 kB] Get:148 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x fakeroot s390x 1.32.1-1 [59.6 kB] Get:149 http://ftpmaster.internal/ubuntu mantic/main s390x gpg s390x 2.2.40-1.1ubuntu1 [508 kB] Get:150 http://ftpmaster.internal/ubuntu mantic/main s390x gpgconf s390x 2.2.40-1.1ubuntu1 [97.4 kB] Get:151 http://ftpmaster.internal/ubuntu mantic/main s390x gpg-agent s390x 2.2.40-1.1ubuntu1 [213 kB] Get:152 http://ftpmaster.internal/ubuntu mantic/main s390x pkgbinarymangler all 153 [16.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 261 MB in 1min 8s (3829 kB/s) (Reading database ... 12875 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.35-1_s390x.deb ... Unpacking libcrypt-dev:s390x (1:4.4.35-1) over (1:4.4.33-1) ... Preparing to unpack .../libc6-dev_2.37-0ubuntu2_s390x.deb ... Unpacking libc6-dev:s390x (2.37-0ubuntu2) over (2.36-0ubuntu4) ... Preparing to unpack .../libc-dev-bin_2.37-0ubuntu2_s390x.deb ... Unpacking libc-dev-bin (2.37-0ubuntu2) over (2.36-0ubuntu4) ... Preparing to unpack .../libcrypt1_1%3a4.4.35-1_s390x.deb ... Unpacking libcrypt1:s390x (1:4.4.35-1) over (1:4.4.33-1) ... Setting up libcrypt1:s390x (1:4.4.35-1) ... (Reading database ... 12875 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_6.3.0-7.7_s390x.deb ... Unpacking linux-libc-dev:s390x (6.3.0-7.7) over (5.19.0-21.21) ... Preparing to unpack .../libc6_2.37-0ubuntu2_s390x.deb ... Unpacking libc6:s390x (2.37-0ubuntu2) over (2.36-0ubuntu4) ... Setting up libc6:s390x (2.37-0ubuntu2) ... (Reading database ... 12881 files and directories currently installed.) Preparing to unpack .../libc-bin_2.37-0ubuntu2_s390x.deb ... Unpacking libc-bin (2.37-0ubuntu2) over (2.36-0ubuntu4) ... Setting up libc-bin (2.37-0ubuntu2) ... Selecting previously unselected package gcc-13-base:s390x. (Reading database ... 12881 files and directories currently installed.) Preparing to unpack .../gcc-13-base_13.1.0-8ubuntu1_s390x.deb ... Unpacking gcc-13-base:s390x (13.1.0-8ubuntu1) ... Setting up gcc-13-base:s390x (13.1.0-8ubuntu1) ... (Reading database ... 12886 files and directories currently installed.) Preparing to unpack .../libgcc-s1_13.1.0-8ubuntu1_s390x.deb ... Unpacking libgcc-s1:s390x (13.1.0-8ubuntu1) over (12.2.0-10ubuntu1) ... Setting up libgcc-s1:s390x (13.1.0-8ubuntu1) ... (Reading database ... 12886 files and directories currently installed.) Preparing to unpack .../base-files_13ubuntu1_s390x.deb ... Unpacking base-files (13ubuntu1) over (12.3ubuntu1) ... Setting up base-files (13ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12886 files and directories currently installed.) Preparing to unpack .../debianutils_5.8-1_s390x.deb ... Unpacking debianutils (5.8-1) over (5.7-0.4) ... Setting up debianutils (5.8-1) ... (Reading database ... 12886 files and directories currently installed.) Preparing to unpack .../bash_5.2.15-2ubuntu1_s390x.deb ... Unpacking bash (5.2.15-2ubuntu1) over (5.2-1ubuntu2) ... Setting up bash (5.2.15-2ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12886 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38.1-5ubuntu2_s390x.deb ... Unpacking bsdutils (1:2.38.1-5ubuntu2) over (1:2.38.1-4ubuntu1) ... Setting up bsdutils (1:2.38.1-5ubuntu2) ... (Reading database ... 12886 files and directories currently installed.) Preparing to unpack .../coreutils_9.1-1ubuntu2_s390x.deb ... Unpacking coreutils (9.1-1ubuntu2) over (8.32-4.1ubuntu1) ... Setting up coreutils (9.1-1ubuntu2) ... (Reading database ... 12886 files and directories currently installed.) Preparing to unpack .../liblzma5_5.4.1-0.2_s390x.deb ... Unpacking liblzma5:s390x (5.4.1-0.2) over (5.2.9-0.0) ... Setting up liblzma5:s390x (5.4.1-0.2) ... (Reading database ... 12886 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.5+dfsg2-1ubuntu2_s390x.deb ... Unpacking libzstd1:s390x (1.5.5+dfsg2-1ubuntu2) over (1.5.2+dfsg-1) ... Setting up libzstd1:s390x (1.5.5+dfsg2-1ubuntu2) ... (Reading database ... 12886 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.2-2ubuntu1_s390x.deb ... Unpacking libgcrypt20:s390x (1.10.2-2ubuntu1) over (1.10.1-2ubuntu1) ... Setting up libgcrypt20:s390x (1.10.2-2ubuntu1) ... (Reading database ... 12886 files and directories currently installed.) Preparing to unpack .../libstdc++6_13.1.0-8ubuntu1_s390x.deb ... Unpacking libstdc++6:s390x (13.1.0-8ubuntu1) over (12.2.0-10ubuntu1) ... Setting up libstdc++6:s390x (13.1.0-8ubuntu1) ... (Reading database ... 12886 files and directories currently installed.) Preparing to unpack .../libacl1_2.3.1-3_s390x.deb ... Unpacking libacl1:s390x (2.3.1-3) over (2.3.1-2) ... Setting up libacl1:s390x (2.3.1-3) ... (Reading database ... 12886 files and directories currently installed.) Preparing to unpack .../libapparmor1_3.0.8-1ubuntu4_s390x.deb ... Unpacking libapparmor1:s390x (3.0.8-1ubuntu4) over (3.0.8-1ubuntu1) ... Preparing to unpack .../libaudit-common_1%3a3.1.1-1_all.deb ... Unpacking libaudit-common (1:3.1.1-1) over (1:3.0.7-1ubuntu3) ... Setting up libaudit-common (1:3.1.1-1) ... (Reading database ... 12886 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.3-1build2_s390x.deb ... Unpacking libcap-ng0:s390x (0.8.3-1build2) over (0.8.3-1build1) ... Setting up libcap-ng0:s390x (0.8.3-1build2) ... (Reading database ... 12886 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.1.1-1_s390x.deb ... Unpacking libaudit1:s390x (1:3.1.1-1) over (1:3.0.7-1ubuntu3) ... Setting up libaudit1:s390x (1:3.1.1-1) ... (Reading database ... 12886 files and directories currently installed.) Preparing to unpack .../libblkid1_2.38.1-5ubuntu2_s390x.deb ... Unpacking libblkid1:s390x (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up libblkid1:s390x (2.38.1-5ubuntu2) ... (Reading database ... 12886 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-4ubuntu1_s390x.deb ... Unpacking libcap2:s390x (1:2.66-4ubuntu1) over (1:2.44-1build3) ... Setting up libcap2:s390x (1:2.66-4ubuntu1) ... (Reading database ... 12888 files and directories currently installed.) Preparing to unpack .../libip4tc2_1.8.9-2ubuntu1_s390x.deb ... Unpacking libip4tc2:s390x (1.8.9-2ubuntu1) over (1.8.7-1ubuntu7) ... Preparing to unpack .../libperl5.36_5.36.0-7ubuntu1_s390x.deb ... Unpacking libperl5.36:s390x (5.36.0-7ubuntu1) over (5.36.0-4ubuntu2) ... Preparing to unpack .../perl_5.36.0-7ubuntu1_s390x.deb ... Unpacking perl (5.36.0-7ubuntu1) over (5.36.0-4ubuntu2) ... Preparing to unpack .../perl-base_5.36.0-7ubuntu1_s390x.deb ... Unpacking perl-base (5.36.0-7ubuntu1) over (5.36.0-4ubuntu2) ... Setting up perl-base (5.36.0-7ubuntu1) ... (Reading database ... 12889 files and directories currently installed.) Preparing to unpack .../perl-modules-5.36_5.36.0-7ubuntu1_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7ubuntu1) over (5.36.0-4ubuntu2) ... Preparing to unpack .../libdb5.3_5.3.28+dfsg2-1_s390x.deb ... Unpacking libdb5.3:s390x (5.3.28+dfsg2-1) over (5.3.28+dfsg1-0.10) ... Setting up libdb5.3:s390x (5.3.28+dfsg2-1) ... (Reading database ... 12889 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.13.dfsg-1ubuntu4_s390x.deb ... Unpacking zlib1g:s390x (1:1.2.13.dfsg-1ubuntu4) over (1:1.2.11.dfsg-4.1ubuntu1) ... Setting up zlib1g:s390x (1:1.2.13.dfsg-1ubuntu4) ... (Reading database ... 12889 files and directories currently installed.) Preparing to unpack .../debconf_1.5.82_all.deb ... Unpacking debconf (1.5.82) over (1.5.79ubuntu1) ... Setting up debconf (1.5.82) ... (Reading database ... 12889 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.9-1ubuntu1_s390x.deb ... Unpacking libssl3:s390x (3.0.9-1ubuntu1) over (3.0.5-2ubuntu2) ... Preparing to unpack .../libkmod2_30+20221128-1ubuntu1_s390x.deb ... Unpacking libkmod2:s390x (30+20221128-1ubuntu1) over (30+20220905-1ubuntu1) ... Preparing to unpack .../libpcre2-8-0_10.42-2_s390x.deb ... Unpacking libpcre2-8-0:s390x (10.42-2) over (10.40-1ubuntu1) ... Setting up libpcre2-8-0:s390x (10.42-2) ... (Reading database ... 12889 files and directories currently installed.) Preparing to unpack .../libselinux1_3.5-1_s390x.deb ... Unpacking libselinux1:s390x (3.5-1) over (3.4-1build1) ... Setting up libselinux1:s390x (3.5-1) ... (Reading database ... 12889 files and directories currently installed.) Preparing to unpack .../libmount1_2.38.1-5ubuntu2_s390x.deb ... Unpacking libmount1:s390x (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up libmount1:s390x (2.38.1-5ubuntu2) ... (Reading database ... 12889 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.2-6ubuntu1_s390x.deb ... Unpacking libpam0g:s390x (1.5.2-6ubuntu1) over (1.5.2-5ubuntu1) ... Setting up libpam0g:s390x (1.5.2-6ubuntu1) ... (Reading database ... 12889 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.4-1ubuntu3_s390x.deb ... Unpacking libseccomp2:s390x (2.5.4-1ubuntu3) over (2.5.4-1ubuntu2) ... Setting up libseccomp2:s390x (2.5.4-1ubuntu3) ... (Reading database ... 12889 files and directories currently installed.) Preparing to unpack .../systemd-sysv_253.5-1ubuntu1_s390x.deb ... Unpacking systemd-sysv (253.5-1ubuntu1) over (251.4-1ubuntu7) ... Setting up libssl3:s390x (3.0.9-1ubuntu1) ... (Reading database ... 12890 files and directories currently installed.) Preparing to unpack .../systemd_253.5-1ubuntu1_s390x.deb ... Unpacking systemd (253.5-1ubuntu1) over (251.4-1ubuntu7) ... Preparing to unpack .../libsystemd-shared_253.5-1ubuntu1_s390x.deb ... Unpacking libsystemd-shared:s390x (253.5-1ubuntu1) over (251.4-1ubuntu7) ... Selecting previously unselected package systemd-dev. Preparing to unpack .../systemd-dev_253.5-1ubuntu1_all.deb ... Unpacking systemd-dev (253.5-1ubuntu1) ... Preparing to unpack .../libargon2-1_0~20190702+dfsg-3_s390x.deb ... Unpacking libargon2-1:s390x (0~20190702+dfsg-3) over (0~20171227-0.3) ... Preparing to unpack .../libudev1_253.5-1ubuntu1_s390x.deb ... Unpacking libudev1:s390x (253.5-1ubuntu1) over (251.4-1ubuntu7) ... Setting up libudev1:s390x (253.5-1ubuntu1) ... (Reading database ... 12924 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.185-2ubuntu1_s390x.deb ... Unpacking libdevmapper1.02.1:s390x (2:1.02.185-2ubuntu1) over (2:1.02.185-1ubuntu1) ... Preparing to unpack .../libuuid1_2.38.1-5ubuntu2_s390x.deb ... Unpacking libuuid1:s390x (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up libuuid1:s390x (2.38.1-5ubuntu2) ... (Reading database ... 12924 files and directories currently installed.) Preparing to unpack .../libcryptsetup12_2%3a2.6.1-4ubuntu1_s390x.deb ... Unpacking libcryptsetup12:s390x (2:2.6.1-4ubuntu1) over (2:2.5.0-6ubuntu3) ... Preparing to unpack .../libfdisk1_2.38.1-5ubuntu2_s390x.deb ... Unpacking libfdisk1:s390x (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Preparing to unpack .../libp11-kit0_0.24.1-2ubuntu1_s390x.deb ... Unpacking libp11-kit0:s390x (0.24.1-2ubuntu1) over (0.24.1-1ubuntu2) ... Setting up libp11-kit0:s390x (0.24.1-2ubuntu1) ... (Reading database ... 12924 files and directories currently installed.) Preparing to unpack .../mount_2.38.1-5ubuntu2_s390x.deb ... Unpacking mount (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Preparing to unpack .../libsystemd0_253.5-1ubuntu1_s390x.deb ... Unpacking libsystemd0:s390x (253.5-1ubuntu1) over (251.4-1ubuntu7) ... Setting up libsystemd0:s390x (253.5-1ubuntu1) ... (Reading database ... 12925 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.7.2_s390x.deb ... Unpacking libapt-pkg6.0:s390x (2.7.2) over (2.5.4) ... Setting up libapt-pkg6.0:s390x (2.7.2) ... (Reading database ... 12925 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1.2ubuntu1_s390x.deb ... Unpacking tar (1.34+dfsg-1.2ubuntu1) over (1.34+dfsg-1.1) ... Setting up tar (1.34+dfsg-1.2ubuntu1) ... (Reading database ... 12925 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.22ubuntu1_s390x.deb ... Unpacking dpkg (1.21.22ubuntu1) over (1.21.11ubuntu2) ... Setting up dpkg (1.21.22ubuntu1) ... (Reading database ... 12928 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-2ubuntu1_s390x.deb ... Unpacking dash (0.5.12-2ubuntu1) over (0.5.11+git20210903+057cd650a4ed-9ubuntu1) ... Setting up dash (0.5.12-2ubuntu1) ... (Reading database ... 12928 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.8-4_s390x.deb ... Unpacking diffutils (1:3.8-4) over (1:3.8-1) ... Setting up diffutils (1:3.8-4) ... (Reading database ... 12928 files and directories currently installed.) Preparing to unpack .../findutils_4.9.0-5_s390x.deb ... Unpacking findutils (4.9.0-5) over (4.9.0-3ubuntu1) ... Setting up findutils (4.9.0-5) ... (Reading database ... 12928 files and directories currently installed.) Preparing to unpack .../archives/grep_3.11-1_s390x.deb ... Unpacking grep (3.11-1) over (3.8-3) ... Setting up grep (3.11-1) ... (Reading database ... 12928 files and directories currently installed.) Preparing to unpack .../hostname_3.23+nmu1ubuntu1_s390x.deb ... Unpacking hostname (3.23+nmu1ubuntu1) over (3.23ubuntu2) ... Setting up hostname (3.23+nmu1ubuntu1) ... (Reading database ... 12928 files and directories currently installed.) Preparing to unpack .../libncurses6_6.4+20230625-1_s390x.deb ... Unpacking libncurses6:s390x (6.4+20230625-1) over (6.3+20220423-2) ... Preparing to unpack .../libncursesw6_6.4+20230625-1_s390x.deb ... Unpacking libncursesw6:s390x (6.4+20230625-1) over (6.3+20220423-2) ... Preparing to unpack .../libtinfo6_6.4+20230625-1_s390x.deb ... Unpacking libtinfo6:s390x (6.4+20230625-1) over (6.3+20220423-2) ... Setting up libtinfo6:s390x (6.4+20230625-1) ... (Reading database ... 12928 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4+20230625-1_s390x.deb ... Unpacking ncurses-bin (6.4+20230625-1) over (6.3+20220423-2) ... Setting up ncurses-bin (6.4+20230625-1) ... (Reading database ... 12928 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-1_s390x.deb ... Unpacking sed (4.9-1) over (4.8-1ubuntu2) ... Setting up sed (4.9-1) ... (Reading database ... 12928 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.38.1-5ubuntu2_s390x.deb ... Unpacking libsmartcols1:s390x (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up libsmartcols1:s390x (2.38.1-5ubuntu2) ... (Reading database ... 12928 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.38.1-5ubuntu2_s390x.deb ... Unpacking util-linux-extra (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up util-linux-extra (2.38.1-5ubuntu2) ... (Reading database ... 12928 files and directories currently installed.) Preparing to unpack .../util-linux_2.38.1-5ubuntu2_s390x.deb ... Unpacking util-linux (2.38.1-5ubuntu2) over (2.38.1-4ubuntu1) ... Setting up util-linux (2.38.1-5ubuntu2) ... (Reading database ... 12928 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.65.2ubuntu1_all.deb ... Unpacking init-system-helpers (1.65.2ubuntu1) over (1.65.2) ... Setting up init-system-helpers (1.65.2ubuntu1) ... (Reading database ... 12928 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4+20230625-1_all.deb ... Unpacking ncurses-base (6.4+20230625-1) over (6.3+20220423-2) ... Setting up ncurses-base (6.4+20230625-1) ... (Reading database ... 12926 files and directories currently installed.) Preparing to unpack .../archives/lsb-base_11.6_all.deb ... Unpacking lsb-base (11.6) over (11.2ubuntu1) ... Preparing to unpack .../sysvinit-utils_3.06-4ubuntu1_s390x.deb ... Unpacking sysvinit-utils (3.06-4ubuntu1) over (3.04-1ubuntu1) ... Setting up sysvinit-utils (3.06-4ubuntu1) ... (Reading database ... 12926 files and directories currently installed.) Preparing to unpack .../adduser_3.137ubuntu1_all.deb ... moving unchanged adduser.conf to adduser.conf.update-old. New dpkg-conffile will come from the package. Unpacking adduser (3.137ubuntu1) over (3.121ubuntu1) ... Setting up adduser (3.137ubuntu1) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... 12890 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.40-1.1ubuntu1_s390x.deb ... Unpacking gpgv (2.2.40-1.1ubuntu1) over (2.2.40-1ubuntu1) ... Setting up gpgv (2.2.40-1.1ubuntu1) ... (Reading database ... 12890 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.2.1+dfsg1-1.1ubuntu2_s390x.deb ... Unpacking libgmp10:s390x (2:6.2.1+dfsg1-1.1ubuntu2) over (2:6.2.1+dfsg1-1.1ubuntu1) ... Setting up libgmp10:s390x (2:6.2.1+dfsg1-1.1ubuntu2) ... (Reading database ... 12890 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.4-1_s390x.deb ... Unpacking libidn2-0:s390x (2.3.4-1) over (2.3.3-1build1) ... Setting up libidn2-0:s390x (2.3.4-1) ... (Reading database ... 12890 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-3_s390x.deb ... Unpacking libtasn1-6:s390x (4.19.0-3) over (4.19.0-2) ... Setting up libtasn1-6:s390x (4.19.0-3) ... (Reading database ... 12890 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.9-2ubuntu1_s390x.deb ... Unpacking libgnutls30:s390x (3.7.9-2ubuntu1) over (3.7.7-2ubuntu2) ... Setting up libgnutls30:s390x (3.7.9-2ubuntu1) ... (Reading database ... 12890 files and directories currently installed.) Preparing to unpack .../archives/apt_2.7.2_s390x.deb ... Unpacking apt (2.7.2) over (2.5.4) ... Setting up apt (2.7.2) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... (Reading database ... 12887 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.2-6ubuntu1_s390x.deb ... Unpacking libpam-modules-bin (1.5.2-6ubuntu1) over (1.5.2-5ubuntu1) ... Setting up libpam-modules-bin (1.5.2-6ubuntu1) ... (Reading database ... 12887 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.2-6ubuntu1_s390x.deb ... Unpacking libpam-modules:s390x (1.5.2-6ubuntu1) over (1.5.2-5ubuntu1) ... Setting up libpam-modules:s390x (1.5.2-6ubuntu1) ... (Reading database ... 12887 files and directories currently installed.) Preparing to unpack .../logsave_1.47.0-1ubuntu2_s390x.deb ... Unpacking logsave (1.47.0-1ubuntu2) over (1.46.6~rc1-1ubuntu1) ... Preparing to unpack .../libext2fs2_1.47.0-1ubuntu2_s390x.deb ... Unpacking libext2fs2:s390x (1.47.0-1ubuntu2) over (1.46.6~rc1-1ubuntu1) ... Setting up libext2fs2:s390x (1.47.0-1ubuntu2) ... (Reading database ... 12887 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.0-1ubuntu2_s390x.deb ... Unpacking e2fsprogs (1.47.0-1ubuntu2) over (1.46.6~rc1-1ubuntu1) ... Setting up libargon2-1:s390x (0~20190702+dfsg-3) ... Setting up libdevmapper1.02.1:s390x (2:1.02.185-2ubuntu1) ... Setting up libcryptsetup12:s390x (2:2.6.1-4ubuntu1) ... Setting up libfdisk1:s390x (2.38.1-5ubuntu2) ... Setting up libkmod2:s390x (30+20221128-1ubuntu1) ... Setting up libapparmor1:s390x (3.0.8-1ubuntu4) ... Setting up libip4tc2:s390x (1.8.9-2ubuntu1) ... Setting up libsystemd-shared:s390x (253.5-1ubuntu1) ... Setting up systemd-dev (253.5-1ubuntu1) ... Setting up mount (2.38.1-5ubuntu2) ... Setting up systemd (253.5-1ubuntu1) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/sleep.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (253.5-1ubuntu1) ... (Reading database ... 12887 files and directories currently installed.) Preparing to unpack .../init_1.65.2ubuntu1_s390x.deb ... Unpacking init (1.65.2ubuntu1) over (1.65.2) ... Preparing to unpack .../libattr1_1%3a2.5.1-4_s390x.deb ... Unpacking libattr1:s390x (1:2.5.1-4) over (1:2.5.1-3) ... Setting up libattr1:s390x (1:2.5.1-4) ... (Reading database ... 12887 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.270ubuntu1_s390x.deb ... Unpacking libdebconfclient0:s390x (0.270ubuntu1) over (0.264ubuntu1) ... Setting up libdebconfclient0:s390x (0.270ubuntu1) ... (Reading database ... 12887 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-1_s390x.deb ... Unpacking libmd0:s390x (1.1.0-1) over (1.0.4-2) ... Setting up libmd0:s390x (1.1.0-1) ... (Reading database ... 12887 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.5.2-6ubuntu1_all.deb ... Unpacking libpam-runtime (1.5.2-6ubuntu1) over (1.5.2-5ubuntu1) ... Setting up libpam-runtime (1.5.2-6ubuntu1) ... (Reading database ... 12887 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1_all.deb ... Unpacking libsemanage-common (3.5-1) over (3.4-1build1) ... Setting up libsemanage-common (3.5-1) ... (Reading database ... 12887 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-1_s390x.deb ... Unpacking libsepol2:s390x (3.5-1) over (3.4-2) ... Setting up libsepol2:s390x (3.5-1) ... (Reading database ... 12887 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1_s390x.deb ... Unpacking libsemanage2:s390x (3.5-1) over (3.4-1build1) ... Setting up libsemanage2:s390x (3.5-1) ... (Reading database ... 12887 files and directories currently installed.) Preparing to unpack .../usrmerge_35ubuntu1_all.deb ... Unpacking usrmerge (35ubuntu1) over (33ubuntu1) ... Setting up usrmerge (35ubuntu1) ... (Reading database ... 12887 files and directories currently installed.) Preparing to unpack .../00-libcom-err2_1.47.0-1ubuntu2_s390x.deb ... Unpacking libcom-err2:s390x (1.47.0-1ubuntu2) over (1.46.6~rc1-1ubuntu1) ... Selecting previously unselected package libproc2-0:s390x. Preparing to unpack .../01-libproc2-0_2%3a4.0.3-1ubuntu1_s390x.deb ... Unpacking libproc2-0:s390x (2:4.0.3-1ubuntu1) ... Preparing to unpack .../02-libss2_1.47.0-1ubuntu2_s390x.deb ... Unpacking libss2:s390x (1.47.0-1ubuntu2) over (1.46.6~rc1-1ubuntu1) ... Preparing to unpack .../03-mawk_1.3.4.20230525-1_s390x.deb ... Unpacking mawk (1.3.4.20230525-1) over (1.3.4.20200120-3.1) ... Preparing to unpack .../04-procps_2%3a4.0.3-1ubuntu1_s390x.deb ... Unpacking procps (2:4.0.3-1ubuntu1) over (2:3.3.17-7ubuntu1) ... Preparing to unpack .../05-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) over (0.0.17) ... Preparing to unpack .../06-openssl_3.0.9-1ubuntu1_s390x.deb ... Unpacking openssl (3.0.9-1ubuntu1) over (3.0.5-2ubuntu2) ... Preparing to unpack .../07-ca-certificates_20230311ubuntu1_all.deb ... Unpacking ca-certificates (20230311ubuntu1) over (20211016ubuntu1) ... Preparing to unpack .../08-libgssapi-krb5-2_1.20.1-2_s390x.deb ... Unpacking libgssapi-krb5-2:s390x (1.20.1-2) over (1.20.1-1build1) ... Preparing to unpack .../09-libkrb5-3_1.20.1-2_s390x.deb ... Unpacking libkrb5-3:s390x (1.20.1-2) over (1.20.1-1build1) ... Preparing to unpack .../10-libkrb5support0_1.20.1-2_s390x.deb ... Unpacking libkrb5support0:s390x (1.20.1-2) over (1.20.1-1build1) ... Preparing to unpack .../11-libk5crypto3_1.20.1-2_s390x.deb ... Unpacking libk5crypto3:s390x (1.20.1-2) over (1.20.1-1build1) ... Preparing to unpack .../12-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) over (8.2-1.2) ... Preparing to unpack .../13-libreadline8_8.2-1.3_s390x.deb ... Unpacking libreadline8:s390x (8.2-1.3) over (8.2-1.2) ... Preparing to unpack .../14-libsqlite3-0_3.42.0-1_s390x.deb ... Unpacking libsqlite3-0:s390x (3.42.0-1) over (3.40.0-1) ... Preparing to unpack .../15-tzdata_2023c-7ubuntu1_all.deb ... Unpacking tzdata (2023c-7ubuntu1) over (2022g-1ubuntu1) ... Preparing to unpack .../16-libpng16-16_1.6.40-1_s390x.deb ... Unpacking libpng16-16:s390x (1.6.40-1) over (1.6.39-2) ... Preparing to unpack .../17-xz-utils_5.4.1-0.2_s390x.deb ... Unpacking xz-utils (5.4.1-0.2) over (5.2.9-0.0) ... Preparing to unpack .../18-advancecomp_2.5-1_s390x.deb ... Unpacking advancecomp (2.5-1) over (2.4-1) ... Preparing to unpack .../19-libctf0_2.40.90.20230714-2ubuntu1_s390x.deb ... Unpacking libctf0:s390x (2.40.90.20230714-2ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../20-libctf-nobfd0_2.40.90.20230714-2ubuntu1_s390x.deb ... Unpacking libctf-nobfd0:s390x (2.40.90.20230714-2ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../21-binutils-s390x-linux-gnu_2.40.90.20230714-2ubuntu1_s390x.deb ... Unpacking binutils-s390x-linux-gnu (2.40.90.20230714-2ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../22-libbinutils_2.40.90.20230714-2ubuntu1_s390x.deb ... Unpacking libbinutils:s390x (2.40.90.20230714-2ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../23-binutils_2.40.90.20230714-2ubuntu1_s390x.deb ... Unpacking binutils (2.40.90.20230714-2ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Preparing to unpack .../24-binutils-common_2.40.90.20230714-2ubuntu1_s390x.deb ... Unpacking binutils-common:s390x (2.40.90.20230714-2ubuntu1) over (2.39.50.20221224-1ubuntu1) ... Selecting previously unselected package libsframe1:s390x. Preparing to unpack .../25-libsframe1_2.40.90.20230714-2ubuntu1_s390x.deb ... Unpacking libsframe1:s390x (2.40.90.20230714-2ubuntu1) ... Preparing to unpack .../26-libisl23_0.26-3_s390x.deb ... Unpacking libisl23:s390x (0.26-3) over (0.25-1) ... Preparing to unpack .../27-libmpfr6_4.2.0-1_s390x.deb ... Unpacking libmpfr6:s390x (4.2.0-1) over (4.1.0-3build3) ... Selecting previously unselected package cpp-13. Preparing to unpack .../28-cpp-13_13.1.0-8ubuntu1_s390x.deb ... Unpacking cpp-13 (13.1.0-8ubuntu1) ... Preparing to unpack .../29-g++_4%3a13.1.0-4ubuntu2_s390x.deb ... Unpacking g++ (4:13.1.0-4ubuntu2) over (4:12.2.0-1ubuntu1) ... Preparing to unpack .../30-gcc_4%3a13.1.0-4ubuntu2_s390x.deb ... Unpacking gcc (4:13.1.0-4ubuntu2) over (4:12.2.0-1ubuntu1) ... Preparing to unpack .../31-cpp_4%3a13.1.0-4ubuntu2_s390x.deb ... Unpacking cpp (4:13.1.0-4ubuntu2) over (4:12.2.0-1ubuntu1) ... Preparing to unpack .../32-libcc1-0_13.1.0-8ubuntu1_s390x.deb ... Unpacking libcc1-0:s390x (13.1.0-8ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../33-libgomp1_13.1.0-8ubuntu1_s390x.deb ... Unpacking libgomp1:s390x (13.1.0-8ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../34-libitm1_13.1.0-8ubuntu1_s390x.deb ... Unpacking libitm1:s390x (13.1.0-8ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../35-libatomic1_13.1.0-8ubuntu1_s390x.deb ... Unpacking libatomic1:s390x (13.1.0-8ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../36-libasan8_13.1.0-8ubuntu1_s390x.deb ... Unpacking libasan8:s390x (13.1.0-8ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../37-libubsan1_13.1.0-8ubuntu1_s390x.deb ... Unpacking libubsan1:s390x (13.1.0-8ubuntu1) over (12.2.0-10ubuntu1) ... Selecting previously unselected package libgcc-13-dev:s390x. Preparing to unpack .../38-libgcc-13-dev_13.1.0-8ubuntu1_s390x.deb ... Unpacking libgcc-13-dev:s390x (13.1.0-8ubuntu1) ... Selecting previously unselected package gcc-13. Preparing to unpack .../39-gcc-13_13.1.0-8ubuntu1_s390x.deb ... Unpacking gcc-13 (13.1.0-8ubuntu1) ... Selecting previously unselected package libstdc++-13-dev:s390x. Preparing to unpack .../40-libstdc++-13-dev_13.1.0-8ubuntu1_s390x.deb ... Unpacking libstdc++-13-dev:s390x (13.1.0-8ubuntu1) ... Selecting previously unselected package g++-13. Preparing to unpack .../41-g++-13_13.1.0-8ubuntu1_s390x.deb ... Unpacking g++-13 (13.1.0-8ubuntu1) ... Preparing to unpack .../42-dpkg-dev_1.21.22ubuntu1_all.deb ... Unpacking dpkg-dev (1.21.22ubuntu1) over (1.21.11ubuntu2) ... Preparing to unpack .../43-libdpkg-perl_1.21.22ubuntu1_all.deb ... Unpacking libdpkg-perl (1.21.22ubuntu1) over (1.21.11ubuntu2) ... Preparing to unpack .../44-lto-disabled-list_41_all.deb ... Unpacking lto-disabled-list (41) over (37) ... Preparing to unpack .../45-build-essential_12.10ubuntu1_s390x.deb ... Unpacking build-essential (12.10ubuntu1) over (12.9ubuntu3) ... Preparing to unpack .../46-g++-12_12.3.0-6ubuntu1_s390x.deb ... Unpacking g++-12 (12.3.0-6ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../47-gcc-12_12.3.0-6ubuntu1_s390x.deb ... Unpacking gcc-12 (12.3.0-6ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../48-libstdc++-12-dev_12.3.0-6ubuntu1_s390x.deb ... Unpacking libstdc++-12-dev:s390x (12.3.0-6ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../49-libgcc-12-dev_12.3.0-6ubuntu1_s390x.deb ... Unpacking libgcc-12-dev:s390x (12.3.0-6ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../50-cpp-12_12.3.0-6ubuntu1_s390x.deb ... Unpacking cpp-12 (12.3.0-6ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../51-gcc-12-base_12.3.0-6ubuntu1_s390x.deb ... Unpacking gcc-12-base:s390x (12.3.0-6ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../52-libfakeroot_1.32.1-1_s390x.deb ... Unpacking libfakeroot:s390x (1.32.1-1) over (1.30.1-1ubuntu1) ... Preparing to unpack .../53-fakeroot_1.32.1-1_s390x.deb ... Unpacking fakeroot (1.32.1-1) over (1.30.1-1ubuntu1) ... Preparing to unpack .../54-gpg_2.2.40-1.1ubuntu1_s390x.deb ... Unpacking gpg (2.2.40-1.1ubuntu1) over (2.2.40-1ubuntu1) ... Preparing to unpack .../55-gpgconf_2.2.40-1.1ubuntu1_s390x.deb ... Unpacking gpgconf (2.2.40-1.1ubuntu1) over (2.2.40-1ubuntu1) ... Preparing to unpack .../56-gpg-agent_2.2.40-1.1ubuntu1_s390x.deb ... Unpacking gpg-agent (2.2.40-1.1ubuntu1) over (2.2.40-1ubuntu1) ... Preparing to unpack .../57-pkgbinarymangler_153_all.deb ... Unpacking pkgbinarymangler (153) over (149) ... Setting up lsb-base (11.6) ... Setting up lto-disabled-list (41) ... Setting up init (1.65.2ubuntu1) ... Setting up libsqlite3-0:s390x (3.42.0-1) ... Setting up binutils-common:s390x (2.40.90.20230714-2ubuntu1) ... Setting up linux-libc-dev:s390x (6.3.0-7.7) ... Setting up libctf-nobfd0:s390x (2.40.90.20230714-2ubuntu1) ... Setting up libcom-err2:s390x (1.47.0-1ubuntu2) ... Setting up libgomp1:s390x (13.1.0-8ubuntu1) ... Setting up libsframe1:s390x (2.40.90.20230714-2ubuntu1) ... Setting up libfakeroot:s390x (1.32.1-1) ... Setting up libkrb5support0:s390x (1.20.1-2) ... Setting up gcc-12-base:s390x (12.3.0-6ubuntu1) ... Setting up tzdata (2023c-7ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Jul 20 05:13:30 UTC 2023. Universal Time is now: Thu Jul 20 05:13:30 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.32.1-1) ... Setting up perl-modules-5.36 (5.36.0-7ubuntu1) ... Setting up libmpfr6:s390x (4.2.0-1) ... Setting up libncurses6:s390x (6.4+20230625-1) ... Setting up xz-utils (5.4.1-0.2) ... Setting up libproc2-0:s390x (2:4.0.3-1ubuntu1) ... Setting up libpng16-16:s390x (1.6.40-1) ... Setting up libatomic1:s390x (13.1.0-8ubuntu1) ... Setting up libss2:s390x (1.47.0-1ubuntu2) ... Setting up libncursesw6:s390x (6.4+20230625-1) ... Setting up libk5crypto3:s390x (1.20.1-2) ... Setting up logsave (1.47.0-1ubuntu2) ... Setting up libubsan1:s390x (13.1.0-8ubuntu1) ... Setting up advancecomp (2.5-1) ... Setting up sensible-utils (0.0.20) ... Setting up libcrypt-dev:s390x (1:4.4.35-1) ... Setting up libasan8:s390x (13.1.0-8ubuntu1) ... Setting up procps (2:4.0.3-1ubuntu1) ... Setting up mawk (1.3.4.20230525-1) ... Setting up libkrb5-3:s390x (1.20.1-2) ... Setting up libbinutils:s390x (2.40.90.20230714-2ubuntu1) ... Setting up libisl23:s390x (0.26-3) ... Setting up libc-dev-bin (2.37-0ubuntu2) ... Setting up openssl (3.0.9-1ubuntu1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.2-1.3) ... Setting up libcc1-0:s390x (13.1.0-8ubuntu1) ... Setting up libperl5.36:s390x (5.36.0-7ubuntu1) ... Setting up libitm1:s390x (13.1.0-8ubuntu1) ... Setting up libctf0:s390x (2.40.90.20230714-2ubuntu1) ... Setting up cpp-12 (12.3.0-6ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.40.90.20230714-2ubuntu1) ... Setting up pkgbinarymangler (153) ... Setting up cpp-13 (13.1.0-8ubuntu1) ... Setting up libreadline8:s390x (8.2-1.3) ... Setting up e2fsprogs (1.47.0-1ubuntu2) ... Setting up binutils (2.40.90.20230714-2ubuntu1) ... Setting up ca-certificates (20230311ubuntu1) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 19 added, 6 removed; done. Setting up perl (5.36.0-7ubuntu1) ... Setting up libgcc-12-dev:s390x (12.3.0-6ubuntu1) ... Setting up libgssapi-krb5-2:s390x (1.20.1-2) ... Setting up libdpkg-perl (1.21.22ubuntu1) ... Setting up libgcc-13-dev:s390x (13.1.0-8ubuntu1) ... Setting up cpp (4:13.1.0-4ubuntu2) ... Setting up gpgconf (2.2.40-1.1ubuntu1) ... Setting up libc6-dev:s390x (2.37-0ubuntu2) ... Setting up gpg (2.2.40-1.1ubuntu1) ... Setting up libstdc++-13-dev:s390x (13.1.0-8ubuntu1) ... Setting up gpg-agent (2.2.40-1.1ubuntu1) ... Setting up libstdc++-12-dev:s390x (12.3.0-6ubuntu1) ... Setting up dpkg-dev (1.21.22ubuntu1) ... Setting up gcc-12 (12.3.0-6ubuntu1) ... Setting up gcc-13 (13.1.0-8ubuntu1) ... Setting up g++-12 (12.3.0-6ubuntu1) ... Setting up g++-13 (13.1.0-8ubuntu1) ... Setting up gcc (4:13.1.0-4ubuntu2) ... Setting up g++ (4:13.1.0-4ubuntu2) ... Setting up build-essential (12.10ubuntu1) ... Processing triggers for libc-bin (2.37-0ubuntu2) ... Processing triggers for debianutils (5.8-1) ... Processing triggers for ca-certificates (20230311ubuntu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-26436019 s390x mantic-proposed -c chroot:build-PACKAGEBUILD-26436019 --arch=s390x --dist=mantic-proposed --nolog kleborate_2.3.2-1.dsc Initiating build PACKAGEBUILD-26436019 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-153-generic #170-Ubuntu SMP Fri Jun 16 13:43:01 UTC 2023 s390x sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-s390x-009.buildd +==============================================================================+ | kleborate 2.3.2-1 (s390x) Thu, 20 Jul 2023 05:13:34 +0000 | +==============================================================================+ Package: kleborate Version: 2.3.2-1 Source Version: 2.3.2-1 Distribution: mantic-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-26436019/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/kleborate-HYaHHi/resolver-gb7C4I' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- kleborate_2.3.2-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/kleborate-HYaHHi/kleborate-2.3.2' with '<>' I: NOTICE: Log filtering will replace 'build/kleborate-HYaHHi' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, ncbi-blast+, mash, kaptive, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, ncbi-blast+, mash, kaptive, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [419 B] Get:5 copy:/<>/apt_archive ./ Packages [488 B] Fetched 1864 B in 0s (167 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-12 libstdc++-12-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-urw-base35 gettext gettext-base groff-base intltool-debian kaptive libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcairo2 libcapnp-0.9.2 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmurmurhash2 libopenjp2-7 libpcre3 libpipeline1 libpixman-1-0 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libraqm0 libsub-override-perl libtiff6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxrender1 m4 mailcap man-db mash media-types mime-support ncbi-blast+ ncbi-data po-debconf python3 python3-biopython python3-cairo python3-distutils python3-freetype python3-lib2to3 python3-minimal python3-numpy python3-pil python3-pkg-resources python3-reportlab python3-rlpycairo python3-setuptools python3.11 python3.11-minimal sgml-base ttf-bitstream-vera w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build python3-installer python3-wheel fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev groff kaptive-data kaptive-example low-memory-monitor gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise gfortran python3-dev python3-pytest python-pil-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-setuptools-doc python3.11-venv python3.11-doc binfmt-support sgml-base-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl python-biopython-doc python3-olefile The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-urw-base35 gettext gettext-base groff-base intltool-debian kaptive libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcairo2 libcapnp-0.9.2 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmurmurhash2 libopenjp2-7 libpcre3 libpipeline1 libpixman-1-0 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libraqm0 libsub-override-perl libtiff6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxrender1 m4 mailcap man-db mash media-types mime-support ncbi-blast+ ncbi-data po-debconf python3 python3-biopython python3-cairo python3-distutils python3-freetype python3-lib2to3 python3-minimal python3-numpy python3-pil python3-pkg-resources python3-reportlab python3-rlpycairo python3-setuptools python3.11 python3.11-minimal sbuild-build-depends-main-dummy sgml-base ttf-bitstream-vera w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 113 newly installed, 0 to remove and 0 not upgraded. Need to get 72.8 MB of archives. After this operation, 266 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [706 B] Get:2 http://ftpmaster.internal/ubuntu mantic/main s390x libpython3.11-minimal s390x 3.11.4-1 [834 kB] Get:3 http://ftpmaster.internal/ubuntu mantic/main s390x libexpat1 s390x 2.5.0-2 [82.5 kB] Get:4 http://ftpmaster.internal/ubuntu mantic/main s390x python3.11-minimal s390x 3.11.4-1 [2118 kB] Get:5 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x python3-minimal s390x 3.11.4-5 [26.8 kB] Get:6 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x media-types all 10.1.0 [27.5 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/main s390x mailcap all 3.70+nmu1ubuntu1 [23.8 kB] Get:8 http://ftpmaster.internal/ubuntu mantic/main s390x mime-support all 3.66 [3696 B] Get:9 http://ftpmaster.internal/ubuntu mantic/main s390x libpython3.11-stdlib s390x 3.11.4-1 [1878 kB] Get:10 http://ftpmaster.internal/ubuntu mantic/main s390x python3.11 s390x 3.11.4-1 [572 kB] Get:11 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libpython3-stdlib s390x 3.11.4-5 [9506 B] Get:12 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x python3 s390x 3.11.4-5 [22.9 kB] Get:13 http://ftpmaster.internal/ubuntu mantic/main s390x sgml-base all 1.31 [11.4 kB] Get:14 http://ftpmaster.internal/ubuntu mantic/main s390x libbsd0 s390x 0.11.7-4 [42.5 kB] Get:15 http://ftpmaster.internal/ubuntu mantic/main s390x libelf1 s390x 0.189-4 [59.7 kB] Get:16 http://ftpmaster.internal/ubuntu mantic/main s390x libfribidi0 s390x 1.0.13-3 [27.2 kB] Get:17 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libglib2.0-0 s390x 2.77.0-0ubuntu2 [1471 kB] Get:18 http://ftpmaster.internal/ubuntu mantic/main s390x libicu72 s390x 72.1-3ubuntu2 [10.7 MB] Get:19 http://ftpmaster.internal/ubuntu mantic/main s390x libxml2 s390x 2.9.14+dfsg-1.3 [715 kB] Get:20 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x python3-pkg-resources all 68.0.0-1 [167 kB] Get:21 http://ftpmaster.internal/ubuntu mantic/main s390x bsdextrautils s390x 2.38.1-5ubuntu2 [71.4 kB] Get:22 http://ftpmaster.internal/ubuntu mantic/main s390x libmagic-mgc s390x 1:5.44-3 [296 kB] Get:23 http://ftpmaster.internal/ubuntu mantic/main s390x libmagic1 s390x 1:5.44-3 [84.5 kB] Get:24 http://ftpmaster.internal/ubuntu mantic/main s390x file s390x 1:5.44-3 [21.7 kB] Get:25 http://ftpmaster.internal/ubuntu mantic/main s390x gettext-base s390x 0.21-13 [38.1 kB] Get:26 http://ftpmaster.internal/ubuntu mantic/main s390x libuchardet0 s390x 0.0.7-1build2 [76.4 kB] Get:27 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x groff-base s390x 1.23.0-2 [1046 kB] Get:28 http://ftpmaster.internal/ubuntu mantic/main s390x liblmdb0 s390x 0.9.24-1build2 [48.6 kB] Get:29 http://ftpmaster.internal/ubuntu mantic/main s390x libpipeline1 s390x 1.5.7-1 [23.4 kB] Get:30 http://ftpmaster.internal/ubuntu mantic/main s390x libxau6 s390x 1:1.0.9-1build5 [7522 B] Get:31 http://ftpmaster.internal/ubuntu mantic/main s390x libxdmcp6 s390x 1:1.1.3-0ubuntu5 [10.8 kB] Get:32 http://ftpmaster.internal/ubuntu mantic/main s390x libxcb1 s390x 1.15-1 [48.3 kB] Get:33 http://ftpmaster.internal/ubuntu mantic/main s390x libx11-data all 2:1.8.6-1 [115 kB] Get:34 http://ftpmaster.internal/ubuntu mantic/main s390x libx11-6 s390x 2:1.8.6-1 [645 kB] Get:35 http://ftpmaster.internal/ubuntu mantic/main s390x libxext6 s390x 2:1.3.4-1build1 [30.5 kB] Get:36 http://ftpmaster.internal/ubuntu mantic/main s390x man-db s390x 2.11.2-2 [1218 kB] Get:37 http://ftpmaster.internal/ubuntu mantic/main s390x m4 s390x 1.4.19-3 [243 kB] Get:38 http://ftpmaster.internal/ubuntu mantic/main s390x autoconf all 2.71-3 [339 kB] Get:39 http://ftpmaster.internal/ubuntu mantic/main s390x autotools-dev all 20220109.1 [44.9 kB] Get:40 http://ftpmaster.internal/ubuntu mantic/main s390x automake all 1:1.16.5-1.3 [558 kB] Get:41 http://ftpmaster.internal/ubuntu mantic/main s390x autopoint all 0.21-13 [422 kB] Get:42 http://ftpmaster.internal/ubuntu mantic/main s390x libdebhelper-perl all 13.11.4ubuntu3 [66.1 kB] Get:43 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libtool all 2.4.7-6 [166 kB] Get:44 http://ftpmaster.internal/ubuntu mantic/main s390x dh-autoreconf all 20 [16.1 kB] Get:45 http://ftpmaster.internal/ubuntu mantic/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:46 http://ftpmaster.internal/ubuntu mantic/main s390x libsub-override-perl all 0.09-4 [8706 B] Get:47 http://ftpmaster.internal/ubuntu mantic/main s390x libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:48 http://ftpmaster.internal/ubuntu mantic/main s390x dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:49 http://ftpmaster.internal/ubuntu mantic/main s390x libdw1 s390x 0.189-4 [253 kB] Get:50 http://ftpmaster.internal/ubuntu mantic/main s390x debugedit s390x 1:5.0-5 [47.5 kB] Get:51 http://ftpmaster.internal/ubuntu mantic/main s390x dwz s390x 0.15-1 [108 kB] Get:52 http://ftpmaster.internal/ubuntu mantic/main s390x gettext s390x 0.21-13 [850 kB] Get:53 http://ftpmaster.internal/ubuntu mantic/main s390x intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:54 http://ftpmaster.internal/ubuntu mantic/main s390x po-debconf all 1.0.21+nmu1 [233 kB] Get:55 http://ftpmaster.internal/ubuntu mantic/main s390x debhelper all 13.11.4ubuntu3 [925 kB] Get:56 http://ftpmaster.internal/ubuntu mantic/main s390x python3-lib2to3 all 3.11.4-1 [79.0 kB] Get:57 http://ftpmaster.internal/ubuntu mantic/main s390x python3-distutils all 3.11.4-1 [131 kB] Get:58 http://ftpmaster.internal/ubuntu mantic-proposed/universe s390x dh-python all 6.20230603 [107 kB] Get:59 http://ftpmaster.internal/ubuntu mantic/main s390x fonts-dejavu-core all 2.37-6 [1137 kB] Get:60 http://ftpmaster.internal/ubuntu mantic/universe s390x ttf-bitstream-vera all 1.10-8.2 [244 kB] Get:61 http://ftpmaster.internal/ubuntu mantic/main s390x libfontenc1 s390x 1:1.1.4-1build3 [14.2 kB] Get:62 http://ftpmaster.internal/ubuntu mantic/main s390x libbrotli1 s390x 1.0.9-2build8 [312 kB] Get:63 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libfreetype6 s390x 2.13.0+dfsg-1 [430 kB] Get:64 http://ftpmaster.internal/ubuntu mantic/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:65 http://ftpmaster.internal/ubuntu mantic/main s390x xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] Get:66 http://ftpmaster.internal/ubuntu mantic/main s390x xfonts-utils s390x 1:7.7+6build2 [94.8 kB] Get:67 http://ftpmaster.internal/ubuntu mantic/main s390x fonts-urw-base35 all 20200910-7 [11.0 MB] Get:68 http://ftpmaster.internal/ubuntu mantic/main s390x fontconfig-config s390x 2.14.1-4ubuntu1 [35.0 kB] Get:69 http://ftpmaster.internal/ubuntu mantic/main s390x libblas3 s390x 3.11.0-2 [180 kB] Get:70 http://ftpmaster.internal/ubuntu mantic/main s390x libgfortran5 s390x 13.1.0-8ubuntu1 [564 kB] Get:71 http://ftpmaster.internal/ubuntu mantic/main s390x liblapack3 s390x 3.11.0-2 [2233 kB] Get:72 http://ftpmaster.internal/ubuntu mantic/main s390x python3-numpy s390x 1:1.24.2-1 [3765 kB] Get:73 http://ftpmaster.internal/ubuntu mantic/main s390x libimagequant0 s390x 2.17.0-1 [35.7 kB] Get:74 http://ftpmaster.internal/ubuntu mantic/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] Get:75 http://ftpmaster.internal/ubuntu mantic/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] Get:76 http://ftpmaster.internal/ubuntu mantic/main s390x liblcms2-2 s390x 2.14-2 [155 kB] Get:77 http://ftpmaster.internal/ubuntu mantic/main s390x libopenjp2-7 s390x 2.5.0-2 [169 kB] Get:78 http://ftpmaster.internal/ubuntu mantic/main s390x libgraphite2-3 s390x 1.3.14-1build2 [68.1 kB] Get:79 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x libharfbuzz0b s390x 8.0.1-1 [436 kB] Get:80 http://ftpmaster.internal/ubuntu mantic/main s390x libraqm0 s390x 0.10.1-1 [14.4 kB] Get:81 http://ftpmaster.internal/ubuntu mantic/main s390x libdeflate0 s390x 1.15-1 [36.6 kB] Get:82 http://ftpmaster.internal/ubuntu mantic/main s390x libjbig0 s390x 2.1-6.1ubuntu1 [29.8 kB] Get:83 http://ftpmaster.internal/ubuntu mantic/main s390x libwebp7 s390x 1.2.4-0.2 [172 kB] Get:84 http://ftpmaster.internal/ubuntu mantic/main s390x libtiff6 s390x 4.5.0-6ubuntu1 [189 kB] Get:85 http://ftpmaster.internal/ubuntu mantic/main s390x libwebpdemux2 s390x 1.2.4-0.2 [9636 B] Get:86 http://ftpmaster.internal/ubuntu mantic/main s390x libwebpmux3 s390x 1.2.4-0.2 [19.3 kB] Get:87 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x python3-pil s390x 10.0.0-1 [443 kB] Get:88 http://ftpmaster.internal/ubuntu mantic/main s390x libfontconfig1 s390x 2.14.1-4ubuntu1 [136 kB] Get:89 http://ftpmaster.internal/ubuntu mantic/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] Get:90 http://ftpmaster.internal/ubuntu mantic/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] Get:91 http://ftpmaster.internal/ubuntu mantic/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] Get:92 http://ftpmaster.internal/ubuntu mantic/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] Get:93 http://ftpmaster.internal/ubuntu mantic/main s390x libcairo2 s390x 1.17.8-2 [528 kB] Get:94 http://ftpmaster.internal/ubuntu mantic/main s390x python3-cairo s390x 1.24.0-1 [114 kB] Get:95 http://ftpmaster.internal/ubuntu mantic/universe s390x python3-freetype all 2.4.0-1 [83.1 kB] Get:96 http://ftpmaster.internal/ubuntu mantic/universe s390x python3-rlpycairo all 0.3.0-2 [9076 B] Get:97 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x python3-reportlab all 4.0.4-9 [567 kB] Get:98 http://ftpmaster.internal/ubuntu mantic/main s390x xml-core all 0.18+nmu1 [21.6 kB] Get:99 http://ftpmaster.internal/ubuntu mantic/universe s390x w3c-sgml-lib all 1.3-3 [280 kB] Get:100 http://ftpmaster.internal/ubuntu mantic-proposed/universe s390x python3-biopython s390x 1.81+dfsg-1 [1666 kB] Get:101 http://ftpmaster.internal/ubuntu mantic/universe s390x ncbi-data all 6.1.20170106+dfsg1-10 [4395 kB] Get:102 http://ftpmaster.internal/ubuntu mantic/universe s390x libmbedcrypto7 s390x 2.28.3-1 [200 kB] Get:103 http://ftpmaster.internal/ubuntu mantic/universe s390x libmbedx509-1 s390x 2.28.3-1 [44.8 kB] Get:104 http://ftpmaster.internal/ubuntu mantic/universe s390x libmbedtls14 s390x 2.28.3-1 [78.8 kB] Get:105 http://ftpmaster.internal/ubuntu mantic/main s390x libpcre3 s390x 2:8.39-15 [170 kB] Get:106 http://ftpmaster.internal/ubuntu mantic/universe s390x ncbi-blast+ s390x 2.12.0+ds-3build1 [11.6 MB] Get:107 http://ftpmaster.internal/ubuntu mantic/universe s390x kaptive all 2.0.4-1 [24.3 kB] Get:108 http://ftpmaster.internal/ubuntu mantic/universe s390x libcapnp-0.9.2 s390x 0.9.2-3 [1280 kB] Get:109 http://ftpmaster.internal/ubuntu mantic-proposed/universe s390x libgslcblas0 s390x 2.7.1+dfsg-5 [109 kB] Get:110 http://ftpmaster.internal/ubuntu mantic-proposed/universe s390x libgsl27 s390x 2.7.1+dfsg-5 [939 kB] Get:111 http://ftpmaster.internal/ubuntu mantic/universe s390x libmurmurhash2 s390x 1.5-3 [5920 B] Get:112 http://ftpmaster.internal/ubuntu mantic/universe s390x mash s390x 2.3+dfsg-3build1 [146 kB] Get:113 http://ftpmaster.internal/ubuntu mantic-proposed/main s390x python3-setuptools all 68.0.0-1 [396 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 72.8 MB in 8s (9035 kB/s) Selecting previously unselected package libpython3.11-minimal:s390x. (Reading database ... 13374 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.4-1_s390x.deb ... Unpacking libpython3.11-minimal:s390x (3.11.4-1) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../libexpat1_2.5.0-2_s390x.deb ... Unpacking libexpat1:s390x (2.5.0-2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.4-1_s390x.deb ... Unpacking python3.11-minimal (3.11.4-1) ... Setting up libpython3.11-minimal:s390x (3.11.4-1) ... Setting up libexpat1:s390x (2.5.0-2) ... Setting up python3.11-minimal (3.11.4-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13688 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.4-5_s390x.deb ... Unpacking python3-minimal (3.11.4-5) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.70+nmu1ubuntu1_all.deb ... Unpacking mailcap (3.70+nmu1ubuntu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libpython3.11-stdlib:s390x. Preparing to unpack .../4-libpython3.11-stdlib_3.11.4-1_s390x.deb ... Unpacking libpython3.11-stdlib:s390x (3.11.4-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.4-1_s390x.deb ... Unpacking python3.11 (3.11.4-1) ... Selecting previously unselected package libpython3-stdlib:s390x. Preparing to unpack .../6-libpython3-stdlib_3.11.4-5_s390x.deb ... Unpacking libpython3-stdlib:s390x (3.11.4-5) ... Setting up python3-minimal (3.11.4-5) ... Selecting previously unselected package python3. (Reading database ... 14121 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.4-5_s390x.deb ... Unpacking python3 (3.11.4-5) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libbsd0:s390x. Preparing to unpack .../002-libbsd0_0.11.7-4_s390x.deb ... Unpacking libbsd0:s390x (0.11.7-4) ... Selecting previously unselected package libelf1:s390x. Preparing to unpack .../003-libelf1_0.189-4_s390x.deb ... Unpacking libelf1:s390x (0.189-4) ... Selecting previously unselected package libfribidi0:s390x. Preparing to unpack .../004-libfribidi0_1.0.13-3_s390x.deb ... Unpacking libfribidi0:s390x (1.0.13-3) ... Selecting previously unselected package libglib2.0-0:s390x. Preparing to unpack .../005-libglib2.0-0_2.77.0-0ubuntu2_s390x.deb ... Unpacking libglib2.0-0:s390x (2.77.0-0ubuntu2) ... Selecting previously unselected package libicu72:s390x. Preparing to unpack .../006-libicu72_72.1-3ubuntu2_s390x.deb ... Unpacking libicu72:s390x (72.1-3ubuntu2) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../007-libxml2_2.9.14+dfsg-1.3_s390x.deb ... Unpacking libxml2:s390x (2.9.14+dfsg-1.3) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../008-python3-pkg-resources_68.0.0-1_all.deb ... Unpacking python3-pkg-resources (68.0.0-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../009-bsdextrautils_2.38.1-5ubuntu2_s390x.deb ... Unpacking bsdextrautils (2.38.1-5ubuntu2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../010-libmagic-mgc_1%3a5.44-3_s390x.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../011-libmagic1_1%3a5.44-3_s390x.deb ... Unpacking libmagic1:s390x (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../012-file_1%3a5.44-3_s390x.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../013-gettext-base_0.21-13_s390x.deb ... Unpacking gettext-base (0.21-13) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../014-libuchardet0_0.0.7-1build2_s390x.deb ... Unpacking libuchardet0:s390x (0.0.7-1build2) ... Selecting previously unselected package groff-base. Preparing to unpack .../015-groff-base_1.23.0-2_s390x.deb ... Unpacking groff-base (1.23.0-2) ... Selecting previously unselected package liblmdb0:s390x. Preparing to unpack .../016-liblmdb0_0.9.24-1build2_s390x.deb ... Unpacking liblmdb0:s390x (0.9.24-1build2) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../017-libpipeline1_1.5.7-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.7-1) ... Selecting previously unselected package libxau6:s390x. Preparing to unpack .../018-libxau6_1%3a1.0.9-1build5_s390x.deb ... Unpacking libxau6:s390x (1:1.0.9-1build5) ... Selecting previously unselected package libxdmcp6:s390x. Preparing to unpack .../019-libxdmcp6_1%3a1.1.3-0ubuntu5_s390x.deb ... Unpacking libxdmcp6:s390x (1:1.1.3-0ubuntu5) ... Selecting previously unselected package libxcb1:s390x. Preparing to unpack .../020-libxcb1_1.15-1_s390x.deb ... Unpacking libxcb1:s390x (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../021-libx11-data_2%3a1.8.6-1_all.deb ... Unpacking libx11-data (2:1.8.6-1) ... Selecting previously unselected package libx11-6:s390x. Preparing to unpack .../022-libx11-6_2%3a1.8.6-1_s390x.deb ... Unpacking libx11-6:s390x (2:1.8.6-1) ... Selecting previously unselected package libxext6:s390x. Preparing to unpack .../023-libxext6_2%3a1.3.4-1build1_s390x.deb ... Unpacking libxext6:s390x (2:1.3.4-1build1) ... Selecting previously unselected package man-db. Preparing to unpack .../024-man-db_2.11.2-2_s390x.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../025-m4_1.4.19-3_s390x.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../026-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../027-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../028-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../029-autopoint_0.21-13_all.deb ... Unpacking autopoint (0.21-13) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../030-libdebhelper-perl_13.11.4ubuntu3_all.deb ... Unpacking libdebhelper-perl (13.11.4ubuntu3) ... Selecting previously unselected package libtool. Preparing to unpack .../031-libtool_2.4.7-6_all.deb ... Unpacking libtool (2.4.7-6) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../032-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../033-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../034-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../035-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../036-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libdw1:s390x. Preparing to unpack .../037-libdw1_0.189-4_s390x.deb ... Unpacking libdw1:s390x (0.189-4) ... Selecting previously unselected package debugedit. Preparing to unpack .../038-debugedit_1%3a5.0-5_s390x.deb ... Unpacking debugedit (1:5.0-5) ... Selecting previously unselected package dwz. Preparing to unpack .../039-dwz_0.15-1_s390x.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../040-gettext_0.21-13_s390x.deb ... Unpacking gettext (0.21-13) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../041-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../042-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../043-debhelper_13.11.4ubuntu3_all.deb ... Unpacking debhelper (13.11.4ubuntu3) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../044-python3-lib2to3_3.11.4-1_all.deb ... Unpacking python3-lib2to3 (3.11.4-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../045-python3-distutils_3.11.4-1_all.deb ... Unpacking python3-distutils (3.11.4-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../046-dh-python_6.20230603_all.deb ... Unpacking dh-python (6.20230603) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../047-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../048-ttf-bitstream-vera_1.10-8.2_all.deb ... Unpacking ttf-bitstream-vera (1.10-8.2) ... Selecting previously unselected package libfontenc1:s390x. Preparing to unpack .../049-libfontenc1_1%3a1.1.4-1build3_s390x.deb ... Unpacking libfontenc1:s390x (1:1.1.4-1build3) ... Selecting previously unselected package libbrotli1:s390x. Preparing to unpack .../050-libbrotli1_1.0.9-2build8_s390x.deb ... Unpacking libbrotli1:s390x (1.0.9-2build8) ... Selecting previously unselected package libfreetype6:s390x. Preparing to unpack .../051-libfreetype6_2.13.0+dfsg-1_s390x.deb ... Unpacking libfreetype6:s390x (2.13.0+dfsg-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../052-x11-common_1%3a7.7+23ubuntu2_all.deb ... Unpacking x11-common (1:7.7+23ubuntu2) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../053-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../054-xfonts-utils_1%3a7.7+6build2_s390x.deb ... Unpacking xfonts-utils (1:7.7+6build2) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../055-fonts-urw-base35_20200910-7_all.deb ... Unpacking fonts-urw-base35 (20200910-7) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../056-fontconfig-config_2.14.1-4ubuntu1_s390x.deb ... Unpacking fontconfig-config (2.14.1-4ubuntu1) ... Selecting previously unselected package libblas3:s390x. Preparing to unpack .../057-libblas3_3.11.0-2_s390x.deb ... Unpacking libblas3:s390x (3.11.0-2) ... Selecting previously unselected package libgfortran5:s390x. Preparing to unpack .../058-libgfortran5_13.1.0-8ubuntu1_s390x.deb ... Unpacking libgfortran5:s390x (13.1.0-8ubuntu1) ... Selecting previously unselected package liblapack3:s390x. Preparing to unpack .../059-liblapack3_3.11.0-2_s390x.deb ... Unpacking liblapack3:s390x (3.11.0-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../060-python3-numpy_1%3a1.24.2-1_s390x.deb ... Unpacking python3-numpy (1:1.24.2-1) ... Selecting previously unselected package libimagequant0:s390x. Preparing to unpack .../061-libimagequant0_2.17.0-1_s390x.deb ... Unpacking libimagequant0:s390x (2.17.0-1) ... Selecting previously unselected package libjpeg-turbo8:s390x. Preparing to unpack .../062-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... Selecting previously unselected package libjpeg8:s390x. Preparing to unpack .../063-libjpeg8_8c-2ubuntu11_s390x.deb ... Unpacking libjpeg8:s390x (8c-2ubuntu11) ... Selecting previously unselected package liblcms2-2:s390x. Preparing to unpack .../064-liblcms2-2_2.14-2_s390x.deb ... Unpacking liblcms2-2:s390x (2.14-2) ... Selecting previously unselected package libopenjp2-7:s390x. Preparing to unpack .../065-libopenjp2-7_2.5.0-2_s390x.deb ... Unpacking libopenjp2-7:s390x (2.5.0-2) ... Selecting previously unselected package libgraphite2-3:s390x. Preparing to unpack .../066-libgraphite2-3_1.3.14-1build2_s390x.deb ... Unpacking libgraphite2-3:s390x (1.3.14-1build2) ... Selecting previously unselected package libharfbuzz0b:s390x. Preparing to unpack .../067-libharfbuzz0b_8.0.1-1_s390x.deb ... Unpacking libharfbuzz0b:s390x (8.0.1-1) ... Selecting previously unselected package libraqm0:s390x. Preparing to unpack .../068-libraqm0_0.10.1-1_s390x.deb ... Unpacking libraqm0:s390x (0.10.1-1) ... Selecting previously unselected package libdeflate0:s390x. Preparing to unpack .../069-libdeflate0_1.15-1_s390x.deb ... Unpacking libdeflate0:s390x (1.15-1) ... Selecting previously unselected package libjbig0:s390x. Preparing to unpack .../070-libjbig0_2.1-6.1ubuntu1_s390x.deb ... Unpacking libjbig0:s390x (2.1-6.1ubuntu1) ... Selecting previously unselected package libwebp7:s390x. Preparing to unpack .../071-libwebp7_1.2.4-0.2_s390x.deb ... Unpacking libwebp7:s390x (1.2.4-0.2) ... Selecting previously unselected package libtiff6:s390x. Preparing to unpack .../072-libtiff6_4.5.0-6ubuntu1_s390x.deb ... Unpacking libtiff6:s390x (4.5.0-6ubuntu1) ... Selecting previously unselected package libwebpdemux2:s390x. Preparing to unpack .../073-libwebpdemux2_1.2.4-0.2_s390x.deb ... Unpacking libwebpdemux2:s390x (1.2.4-0.2) ... Selecting previously unselected package libwebpmux3:s390x. Preparing to unpack .../074-libwebpmux3_1.2.4-0.2_s390x.deb ... Unpacking libwebpmux3:s390x (1.2.4-0.2) ... Selecting previously unselected package python3-pil:s390x. Preparing to unpack .../075-python3-pil_10.0.0-1_s390x.deb ... Unpacking python3-pil:s390x (10.0.0-1) ... Selecting previously unselected package libfontconfig1:s390x. Preparing to unpack .../076-libfontconfig1_2.14.1-4ubuntu1_s390x.deb ... Unpacking libfontconfig1:s390x (2.14.1-4ubuntu1) ... Selecting previously unselected package libpixman-1-0:s390x. Preparing to unpack .../077-libpixman-1-0_0.42.2-1_s390x.deb ... Unpacking libpixman-1-0:s390x (0.42.2-1) ... Selecting previously unselected package libxcb-render0:s390x. Preparing to unpack .../078-libxcb-render0_1.15-1_s390x.deb ... Unpacking libxcb-render0:s390x (1.15-1) ... Selecting previously unselected package libxcb-shm0:s390x. Preparing to unpack .../079-libxcb-shm0_1.15-1_s390x.deb ... Unpacking libxcb-shm0:s390x (1.15-1) ... Selecting previously unselected package libxrender1:s390x. Preparing to unpack .../080-libxrender1_1%3a0.9.10-1.1_s390x.deb ... Unpacking libxrender1:s390x (1:0.9.10-1.1) ... Selecting previously unselected package libcairo2:s390x. Preparing to unpack .../081-libcairo2_1.17.8-2_s390x.deb ... Unpacking libcairo2:s390x (1.17.8-2) ... Selecting previously unselected package python3-cairo:s390x. Preparing to unpack .../082-python3-cairo_1.24.0-1_s390x.deb ... Unpacking python3-cairo:s390x (1.24.0-1) ... Selecting previously unselected package python3-freetype. Preparing to unpack .../083-python3-freetype_2.4.0-1_all.deb ... Unpacking python3-freetype (2.4.0-1) ... Selecting previously unselected package python3-rlpycairo. Preparing to unpack .../084-python3-rlpycairo_0.3.0-2_all.deb ... Unpacking python3-rlpycairo (0.3.0-2) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../085-python3-reportlab_4.0.4-9_all.deb ... Unpacking python3-reportlab (4.0.4-9) ... Selecting previously unselected package xml-core. Preparing to unpack .../086-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package w3c-sgml-lib. Preparing to unpack .../087-w3c-sgml-lib_1.3-3_all.deb ... Unpacking w3c-sgml-lib (1.3-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../088-python3-biopython_1.81+dfsg-1_s390x.deb ... Unpacking python3-biopython (1.81+dfsg-1) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../089-ncbi-data_6.1.20170106+dfsg1-10_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg1-10) ... Selecting previously unselected package libmbedcrypto7:s390x. Preparing to unpack .../090-libmbedcrypto7_2.28.3-1_s390x.deb ... Unpacking libmbedcrypto7:s390x (2.28.3-1) ... Selecting previously unselected package libmbedx509-1:s390x. Preparing to unpack .../091-libmbedx509-1_2.28.3-1_s390x.deb ... Unpacking libmbedx509-1:s390x (2.28.3-1) ... Selecting previously unselected package libmbedtls14:s390x. Preparing to unpack .../092-libmbedtls14_2.28.3-1_s390x.deb ... Unpacking libmbedtls14:s390x (2.28.3-1) ... Selecting previously unselected package libpcre3:s390x. Preparing to unpack .../093-libpcre3_2%3a8.39-15_s390x.deb ... Unpacking libpcre3:s390x (2:8.39-15) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../094-ncbi-blast+_2.12.0+ds-3build1_s390x.deb ... Unpacking ncbi-blast+ (2.12.0+ds-3build1) ... Selecting previously unselected package kaptive. Preparing to unpack .../095-kaptive_2.0.4-1_all.deb ... Unpacking kaptive (2.0.4-1) ... Selecting previously unselected package libcapnp-0.9.2:s390x. Preparing to unpack .../096-libcapnp-0.9.2_0.9.2-3_s390x.deb ... Unpacking libcapnp-0.9.2:s390x (0.9.2-3) ... Selecting previously unselected package libgslcblas0:s390x. Preparing to unpack .../097-libgslcblas0_2.7.1+dfsg-5_s390x.deb ... Unpacking libgslcblas0:s390x (2.7.1+dfsg-5) ... Selecting previously unselected package libgsl27:s390x. Preparing to unpack .../098-libgsl27_2.7.1+dfsg-5_s390x.deb ... Unpacking libgsl27:s390x (2.7.1+dfsg-5) ... Selecting previously unselected package libmurmurhash2:s390x. Preparing to unpack .../099-libmurmurhash2_1.5-3_s390x.deb ... Unpacking libmurmurhash2:s390x (1.5-3) ... Selecting previously unselected package mash. Preparing to unpack .../100-mash_2.3+dfsg-3build1_s390x.deb ... Unpacking mash (2.3+dfsg-3build1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../101-python3-setuptools_68.0.0-1_all.deb ... Unpacking python3-setuptools (68.0.0-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../102-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:s390x (1.5.7-1) ... Setting up liblmdb0:s390x (0.9.24-1build2) ... Setting up libgraphite2-3:s390x (1.3.14-1build2) ... Setting up liblcms2-2:s390x (2.14-2) ... Setting up ncbi-data (6.1.20170106+dfsg1-10) ... Setting up libpixman-1-0:s390x (0.42.2-1) ... Setting up libxau6:s390x (1:1.0.9-1build5) ... Setting up ttf-bitstream-vera (1.10-8.2) ... Setting up libicu72:s390x (72.1-3ubuntu2) ... Setting up bsdextrautils (2.38.1-5ubuntu2) ... Setting up libgslcblas0:s390x (2.7.1+dfsg-5) ... Setting up libmurmurhash2:s390x (1.5-3) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:s390x (2.77.0-0ubuntu2) ... No schema files found: doing nothing. Setting up fontconfig-config (2.14.1-4ubuntu1) ... Setting up libpython3.11-stdlib:s390x (3.11.4-1) ... Setting up libdebhelper-perl (13.11.4ubuntu3) ... Setting up libbrotli1:s390x (1.0.9-2build8) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:s390x (1:5.44-3) ... Setting up libdeflate0:s390x (1.15-1) ... Setting up gettext-base (0.21-13) ... Setting up libgsl27:s390x (2.7.1+dfsg-5) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libjbig0:s390x (2.1-6.1ubuntu1) ... Setting up libpcre3:s390x (2:8.39-15) ... Setting up libfontenc1:s390x (1:1.1.4-1build3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:s390x (3.11.0-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode Setting up libfreetype6:s390x (2.13.0+dfsg-1) ... Setting up libmbedcrypto7:s390x (2.28.3-1) ... Setting up libx11-data (2:1.8.6-1) ... Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... Setting up libfribidi0:s390x (1.0.13-3) ... Setting up libimagequant0:s390x (2.17.0-1) ... Setting up autopoint (0.21-13) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... Setting up libgfortran5:s390x (13.1.0-8ubuntu1) ... Setting up libcapnp-0.9.2:s390x (0.9.2-3) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:s390x (1.2.4-0.2) ... Setting up libuchardet0:s390x (0.0.7-1build2) ... Setting up libopenjp2-7:s390x (2.5.0-2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libharfbuzz0b:s390x (8.0.1-1) ... Setting up sgml-base (1.31) ... Setting up libfontconfig1:s390x (2.14.1-4ubuntu1) ... Setting up libwebpmux3:s390x (1.2.4-0.2) ... Setting up libbsd0:s390x (0.11.7-4) ... Setting up mailcap (3.70+nmu1ubuntu1) ... Setting up libelf1:s390x (0.189-4) ... Setting up libxml2:s390x (2.9.14+dfsg-1.3) ... Setting up libpython3-stdlib:s390x (3.11.4-5) ... Setting up libjpeg8:s390x (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.11 (3.11.4-1) ... Setting up libdw1:s390x (0.189-4) ... Setting up libxdmcp6:s390x (1:1.1.3-0ubuntu5) ... Setting up liblapack3:s390x (3.11.0-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode Setting up libxcb1:s390x (1.15-1) ... Setting up gettext (0.21-13) ... Setting up mime-support (3.66) ... Setting up libmbedx509-1:s390x (2.28.3-1) ... Setting up libmbedtls14:s390x (2.28.3-1) ... Setting up libtool (2.4.7-6) ... Setting up libxcb-render0:s390x (1.15-1) ... Setting up libwebpdemux2:s390x (1.2.4-0.2) ... Setting up python3 (3.11.4-5) ... Setting up libxcb-shm0:s390x (1.15-1) ... Setting up python3-freetype (2.4.0-1) ... Setting up xfonts-utils (1:7.7+6build2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up ncbi-blast+ (2.12.0+ds-3build1) ... Setting up dh-autoreconf (20) ... Setting up libraqm0:s390x (0.10.1-1) ... Setting up mash (2.3+dfsg-3build1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-2) ... Setting up libtiff6:s390x (4.5.0-6ubuntu1) ... Setting up xml-core (0.18+nmu1) ... Setting up debugedit (1:5.0-5) ... Setting up libx11-6:s390x (2:1.8.6-1) ... Setting up python3-lib2to3 (3.11.4-1) ... Setting up python3-pkg-resources (68.0.0-1) ... Setting up python3-distutils (3.11.4-1) ... Setting up dh-python (6.20230603) ... Setting up python3-setuptools (68.0.0-1) ... Setting up libxrender1:s390x (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:s390x (2:1.3.4-1build1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcairo2:s390x (1.17.8-2) ... Setting up python3-pil:s390x (10.0.0-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-cairo:s390x (1.24.0-1) ... Setting up debhelper (13.11.4ubuntu3) ... Setting up python3-rlpycairo (0.3.0-2) ... Setting up python3-reportlab (4.0.4-9) ... Processing triggers for libc-bin (2.37-0ubuntu2) ... Processing triggers for systemd (253.5-1ubuntu1) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.81+dfsg-1) ... Setting up kaptive (2.0.4-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-153-generic #170-Ubuntu SMP Fri Jun 16 13:43:01 UTC 2023 s390x (s390x) Toolchain package versions: binutils_2.40.90.20230714-2ubuntu1 dpkg-dev_1.21.22ubuntu1 g++-12_12.3.0-6ubuntu1 g++-13_13.1.0-8ubuntu1 gcc-12_12.3.0-6ubuntu1 gcc-13_13.1.0-8ubuntu1 libc6-dev_2.37-0ubuntu2 libstdc++-12-dev_12.3.0-6ubuntu1 libstdc++-13-dev_13.1.0-8ubuntu1 libstdc++6_13.1.0-8ubuntu1 linux-libc-dev_6.3.0-7.7 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.2 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13ubuntu1 base-passwd_3.6.1 bash_5.2.15-2ubuntu1 binutils_2.40.90.20230714-2ubuntu1 binutils-common_2.40.90.20230714-2ubuntu1 binutils-s390x-linux-gnu_2.40.90.20230714-2ubuntu1 bsdextrautils_2.38.1-5ubuntu2 bsdutils_1:2.38.1-5ubuntu2 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 coreutils_9.1-1ubuntu2 cpp_4:13.1.0-4ubuntu2 cpp-12_12.3.0-6ubuntu1 cpp-13_13.1.0-8ubuntu1 dash_0.5.12-2ubuntu1 debconf_1.5.82 debhelper_13.11.4ubuntu3 debianutils_5.8-1 debugedit_1:5.0-5 dh-autoreconf_20 dh-python_6.20230603 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.22ubuntu1 dpkg-dev_1.21.22ubuntu1 dwz_0.15-1 e2fsprogs_1.47.0-1ubuntu2 fakeroot_1.32.1-1 file_1:5.44-3 findutils_4.9.0-5 fontconfig-config_2.14.1-4ubuntu1 fonts-dejavu-core_2.37-6 fonts-urw-base35_20200910-7 g++_4:13.1.0-4ubuntu2 g++-12_12.3.0-6ubuntu1 g++-13_13.1.0-8ubuntu1 gcc_4:13.1.0-4ubuntu2 gcc-12_12.3.0-6ubuntu1 gcc-12-base_12.3.0-6ubuntu1 gcc-13_13.1.0-8ubuntu1 gcc-13-base_13.1.0-8ubuntu1 gettext_0.21-13 gettext-base_0.21-13 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 gpgv_2.2.40-1.1ubuntu1 grep_3.11-1 groff-base_1.23.0-2 gzip_1.12-1ubuntu1 hostname_3.23+nmu1ubuntu1 init_1.65.2ubuntu1 init-system-helpers_1.65.2ubuntu1 intltool-debian_0.35.0+20060710.6 kaptive_2.0.4-1 libacl1_2.3.1-3 libapparmor1_3.0.8-1ubuntu4 libapt-pkg6.0_2.7.2 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-3 libasan8_13.1.0-8ubuntu1 libassuan0_2.5.5-5 libatomic1_13.1.0-8ubuntu1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.40.90.20230714-2ubuntu1 libblas3_3.11.0-2 libblkid1_2.38.1-5ubuntu2 libbrotli1_1.0.9-2build8 libbsd0_0.11.7-4 libbz2-1.0_1.0.8-5build1 libc-bin_2.37-0ubuntu2 libc-dev-bin_2.37-0ubuntu2 libc6_2.37-0ubuntu2 libc6-dev_2.37-0ubuntu2 libcairo2_1.17.8-2 libcap-ng0_0.8.3-1build2 libcap2_1:2.66-4ubuntu1 libcapnp-0.9.2_0.9.2-3 libcc1-0_13.1.0-8ubuntu1 libcom-err2_1.47.0-1ubuntu2 libcrypt-dev_1:4.4.35-1 libcrypt1_1:4.4.35-1 libcryptsetup12_2:2.6.1-4ubuntu1 libctf-nobfd0_2.40.90.20230714-2ubuntu1 libctf0_2.40.90.20230714-2ubuntu1 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.270ubuntu1 libdebhelper-perl_13.11.4ubuntu3 libdeflate0_1.15-1 libdevmapper1.02.1_2:1.02.185-2ubuntu1 libdpkg-perl_1.21.22ubuntu1 libdw1_0.189-4 libelf1_0.189-4 libexpat1_2.5.0-2 libext2fs2_1.47.0-1ubuntu2 libfakeroot_1.32.1-1 libfdisk1_2.38.1-5ubuntu2 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libfontconfig1_2.14.1-4ubuntu1 libfontenc1_1:1.1.4-1build3 libfreetype6_2.13.0+dfsg-1 libfribidi0_1.0.13-3 libgcc-12-dev_12.3.0-6ubuntu1 libgcc-13-dev_13.1.0-8ubuntu1 libgcc-s1_13.1.0-8ubuntu1 libgcrypt20_1.10.2-2ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_13.1.0-8ubuntu1 libglib2.0-0_2.77.0-0ubuntu2 libgmp10_2:6.2.1+dfsg1-1.1ubuntu2 libgnutls30_3.7.9-2ubuntu1 libgomp1_13.1.0-8ubuntu1 libgpg-error0_1.46-1 libgraphite2-3_1.3.14-1build2 libgsl27_2.7.1+dfsg-5 libgslcblas0_2.7.1+dfsg-5 libgssapi-krb5-2_1.20.1-2 libharfbuzz0b_8.0.1-1 libhogweed6_3.8.1-2 libicu72_72.1-3ubuntu2 libidn2-0_2.3.4-1 libimagequant0_2.17.0-1 libip4tc2_1.8.9-2ubuntu1 libisl23_0.26-3 libitm1_13.1.0-8ubuntu1 libjansson4_2.14-2 libjbig0_2.1-6.1ubuntu1 libjpeg-turbo8_2.1.5-2ubuntu1 libjpeg8_8c-2ubuntu11 libjson-c5_0.16-2 libk5crypto3_1.20.1-2 libkeyutils1_1.6.3-2 libkmod2_30+20221128-1ubuntu1 libkrb5-3_1.20.1-2 libkrb5support0_1.20.1-2 liblapack3_3.11.0-2 liblcms2-2_2.14-2 liblmdb0_0.9.24-1build2 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblz4-1_1.9.4-1 liblzma5_5.4.1-0.2 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmbedcrypto7_2.28.3-1 libmbedtls14_2.28.3-1 libmbedx509-1_2.28.3-1 libmd0_1.1.0-1 libmount1_2.38.1-5ubuntu2 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libmurmurhash2_1.5-3 libncurses6_6.4+20230625-1 libncursesw6_6.4+20230625-1 libnettle8_3.8.1-2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libopenjp2-7_2.5.0-2 libp11-kit0_0.24.1-2ubuntu1 libpam-modules_1.5.2-6ubuntu1 libpam-modules-bin_1.5.2-6ubuntu1 libpam-runtime_1.5.2-6ubuntu1 libpam0g_1.5.2-6ubuntu1 libpcre2-8-0_10.42-2 libpcre3_2:8.39-15 libperl5.36_5.36.0-7ubuntu1 libpipeline1_1.5.7-1 libpixman-1-0_0.42.2-1 libpng16-16_1.6.40-1 libproc2-0_2:4.0.3-1ubuntu1 libprocps8_2:3.3.17-7ubuntu1 libpython3-stdlib_3.11.4-5 libpython3.11-minimal_3.11.4-1 libpython3.11-stdlib_3.11.4-1 libraqm0_0.10.1-1 libreadline8_8.2-1.3 libseccomp2_2.5.4-1ubuntu3 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol2_3.5-1 libsframe1_2.40.90.20230714-2ubuntu1 libsmartcols1_2.38.1-5ubuntu2 libsqlite3-0_3.42.0-1 libss2_1.47.0-1ubuntu2 libssl3_3.0.9-1ubuntu1 libstdc++-12-dev_12.3.0-6ubuntu1 libstdc++-13-dev_13.1.0-8ubuntu1 libstdc++6_13.1.0-8ubuntu1 libsub-override-perl_0.09-4 libsystemd-shared_253.5-1ubuntu1 libsystemd0_253.5-1ubuntu1 libtasn1-6_4.19.0-3 libtiff6_4.5.0-6ubuntu1 libtinfo6_6.4+20230625-1 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-6 libubsan1_13.1.0-8ubuntu1 libuchardet0_0.0.7-1build2 libudev1_253.5-1ubuntu1 libunistring2_1.0-2 libuuid1_2.38.1-5ubuntu2 libwebp7_1.2.4-0.2 libwebpdemux2_1.2.4-0.2 libwebpmux3_1.2.4-0.2 libx11-6_2:1.8.6-1 libx11-data_2:1.8.6-1 libxau6_1:1.0.9-1build5 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.3-0ubuntu5 libxext6_2:1.3.4-1build1 libxml2_2.9.14+dfsg-1.3 libxrender1_1:0.9.10-1.1 libxxhash0_0.8.1-1 libzstd1_1.5.5+dfsg2-1ubuntu2 linux-libc-dev_6.3.0-7.7 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.47.0-1ubuntu2 lsb-base_11.6 lto-disabled-list_41 m4_1.4.19-3 mailcap_3.70+nmu1ubuntu1 make_4.3-4.1build1 man-db_2.11.2-2 mash_2.3+dfsg-3build1 mawk_1.3.4.20230525-1 media-types_10.1.0 mime-support_3.66 mount_2.38.1-5ubuntu2 ncbi-blast+_2.12.0+ds-3build1 ncbi-data_6.1.20170106+dfsg1-10 ncurses-base_6.4+20230625-1 ncurses-bin_6.4+20230625-1 openssl_3.0.9-1ubuntu1 optipng_0.7.7-2build1 passwd_1:4.13+dfsg1-1ubuntu1 patch_2.7.6-7build2 perl_5.36.0-7ubuntu1 perl-base_5.36.0-7ubuntu1 perl-modules-5.36_5.36.0-7ubuntu1 pinentry-curses_1.2.1-1ubuntu1 pkgbinarymangler_153 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.3-1ubuntu1 python3_3.11.4-5 python3-biopython_1.81+dfsg-1 python3-cairo_1.24.0-1 python3-distutils_3.11.4-1 python3-freetype_2.4.0-1 python3-lib2to3_3.11.4-1 python3-minimal_3.11.4-5 python3-numpy_1:1.24.2-1 python3-pil_10.0.0-1 python3-pkg-resources_68.0.0-1 python3-reportlab_4.0.4-9 python3-rlpycairo_0.3.0-2 python3-setuptools_68.0.0-1 python3.11_3.11.4-1 python3.11-minimal_3.11.4-1 readline-common_8.2-1.3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 systemd_253.5-1ubuntu1 systemd-dev_253.5-1ubuntu1 systemd-sysv_253.5-1ubuntu1 sysvinit-utils_3.06-4ubuntu1 tar_1.34+dfsg-1.2ubuntu1 ttf-bitstream-vera_1.10-8.2 tzdata_2023c-7ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_35ubuntu1 util-linux_2.38.1-5ubuntu2 util-linux-extra_2.38.1-5ubuntu2 w3c-sgml-lib_1.3-3 x11-common_1:7.7+23ubuntu2 xfonts-encodings_1:1.0.5-0ubuntu2 xfonts-utils_1:7.7+6build2 xml-core_0.18+nmu1 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: kleborate Binary: kleborate, kleborate-examples Architecture: any all Version: 2.3.2-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/katholt/Kleborate Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/kleborate Vcs-Git: https://salsa.debian.org/med-team/kleborate.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, ncbi-blast+ , mash , kaptive Package-List: kleborate deb science optional arch=any kleborate-examples deb science optional arch=all Checksums-Sha1: 9c5e25aeaf6b2b176a93b00166227be180d2e7d1 91569258 kleborate_2.3.2.orig.tar.gz 42be28ec6de2accf612da54d2b1e322a9d5e1fc4 5996420 kleborate_2.3.2-1.debian.tar.xz Checksums-Sha256: da7cb9a27ddba4e5440063e2d4a0c4a9f9e668a65ae9f019db126dc5b10d7002 91569258 kleborate_2.3.2.orig.tar.gz 8634dc2a19e455e447dadd3f9ca7a1cdb580bfd58c640639b64c99a77fb02e50 5996420 kleborate_2.3.2-1.debian.tar.xz Files: 9772fb524841a8415e80ec9a95563562 91569258 kleborate_2.3.2.orig.tar.gz abbbe47c15159e1a3441977e3944a72e 5996420 kleborate_2.3.2-1.debian.tar.xz Dgit: 28e362323f6114a0f21907c814384c377db2f165 debian archive/debian/2.3.2-1 https://git.dgit.debian.org/kleborate -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmS4ZhgUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoZ4xAAxAjZPYJKVNXpr4Zy7fi9fpw4/BgD Z+S5s+CIQcw27c2XYdBlJA+Ky4pLjYU0aj6l4YKk2AkIm6xqaL3uVeoEz7tIaOHl oX8jDfrz0rhDTv+V65TeD0NLK9Xyilwb/EL9PQ20kDQO/JEudYPeUSZKlw5kthrf fQwAwgi91KIWdgA/lwv4dCEE+VSZhtMTSVIswSwX1HjtfeKuEcmzOfvh2+DxfO5W NZpGxD/loH8OfcUhWYXbhPwPc0cBjg85VhTYCYF3nqBPcGxxkKBSBhXpQqjoBdQ9 59GMJI7fgkcwIzTNTmtp+70hLcxIE7roMXIoi+cw9EcJel4uwHhhuLEjlzckAwfr egQiNa3Ct5euG+W7mdAoe6IuSTC2iOtxQfQwnoBYCjPlzQSJe0rsOeFCW3Aojv3N 8/mJybuSp/EdYP12c16W89Fr2rSvazAJMc/57fa6Hl2LOQDix7Vx61gzTLvc4Gv2 0OMA1rw/aqycwHy1NrxoJfjJ1n1t1WdAJCmbMC73+1Ys6RL9fMhkuR2h7Vh/VWIk /86W7slnc9po3VqVKVtb8fpKOY+WwS6YLA2eytDm3cZtH9iqfE0n0sItQyEj7SSO FehfPVHd1w0deMVTPH6J+g2zBHxqACjTrzBEb8tE/N/sB3hVbedGItdN/Z4P/kXN DjNMFZ853Qtd+bA= =6Kwo -----END PGP SIGNATURE----- gpgv: Signature made Wed Jul 19 22:39:20 2023 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./kleborate_2.3.2-1.dsc: no acceptable signature found dpkg-source: info: extracting kleborate in /<> dpkg-source: info: unpacking kleborate_2.3.2.orig.tar.gz dpkg-source: info: unpacking kleborate_2.3.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3.patch dpkg-source: info: applying use_debian_installed_kaptive.patch dpkg-source: info: applying bigendian.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-26436019 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-26436019 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-26436019 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package kleborate dpkg-buildpackage: info: source version 2.3.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:275: python3.11 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-s390x' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:275: python3.11 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:275: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/mlstBLAST.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/truncation.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/resBLAST.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/misc.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/help_formatter.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/blastn.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/contig_stats.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/shv_mutations.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/__main__.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/rmpA.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/species.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/__init__.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/version.py -> /<>/.pybuild/cpython3_3.11/build/kleborate copying kleborate/kaptive.py -> /<>/.pybuild/cpython3_3.11/build/kleborate running egg_info creating Kleborate.egg-info writing Kleborate.egg-info/PKG-INFO writing dependency_links to Kleborate.egg-info/dependency_links.txt writing entry points to Kleborate.egg-info/entry_points.txt writing requirements to Kleborate.egg-info/requires.txt writing top-level names to Kleborate.egg-info/top_level.txt writing manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'kleborate/ICEKp_references' warning: no directories found matching 'kaptive/reference_database' warning: no directories found matching 'kaptive/sample_data' adding license file 'LICENSE' writing manifest file 'Kleborate.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'kleborate.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'kleborate.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'kleborate.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'kleborate.data' to be distributed and are already explicitly excluding 'kleborate.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'kleborate.data.ICEKp_references' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'kleborate.data.ICEKp_references' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'kleborate.data.ICEKp_references' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'kleborate.data.ICEKp_references' to be distributed and are already explicitly excluding 'kleborate.data.ICEKp_references' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/AbST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/CARD_AMR_clustered.csv -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/CARD_v3.1.13.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/CbST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/Klebsiella_pneumoniae.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/MgrB_and_PmrB.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/OmpK.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/QRDR_120.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/RmST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/SmST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/YbST_profiles.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/clb_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/iro_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/iuc_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/kpneumoniae.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/rmpA2.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/rmp_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/species_mash_sketches.msh -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/wzi.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/wzi.txt -> /<>/.pybuild/cpython3_3.11/build/kleborate/data copying kleborate/data/ybt_alleles.fasta -> /<>/.pybuild/cpython3_3.11/build/kleborate/data creating /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp1.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp10.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp11.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp12.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp13.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp14.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp15.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp16.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp17.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp18.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp19.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp2.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp20.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp21.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp22.gff -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp3.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp4.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp5.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp6.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp7.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp8.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp9.embl -> /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references dh_auto_test -a -O--buildsystem=pybuild I: pybuild base:275: cd /<>/.pybuild/cpython3_3.11/build; python3.11 -m unittest discover -v /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. warnings.warn( test_ambiguous_bases_1 (test.test_contig_stats.TestContigStats.test_ambiguous_bases_1) ... ok test_ambiguous_bases_2 (test.test_contig_stats.TestContigStats.test_ambiguous_bases_2) ... ok test_ambiguous_bases_3 (test.test_contig_stats.TestContigStats.test_ambiguous_bases_3) ... ok test_ambiguous_bases_4 (test.test_contig_stats.TestContigStats.test_ambiguous_bases_4) ... ok test_count_1 (test.test_contig_stats.TestContigStats.test_count_1) ... ok test_count_2 (test.test_contig_stats.TestContigStats.test_count_2) ... ok test_longest_1 (test.test_contig_stats.TestContigStats.test_longest_1) ... ok test_longest_2 (test.test_contig_stats.TestContigStats.test_longest_2) ... ok test_n50_1 (test.test_contig_stats.TestContigStats.test_n50_1) ... ok test_n50_2 (test.test_contig_stats.TestContigStats.test_n50_2) ... ok test_qc_warnings_1 (test.test_contig_stats.TestContigStats.test_qc_warnings_1) ... ok test_qc_warnings_2 (test.test_contig_stats.TestContigStats.test_qc_warnings_2) ... ok test_qc_warnings_3 (test.test_contig_stats.TestContigStats.test_qc_warnings_3) ... ok test_qc_warnings_4 (test.test_contig_stats.TestContigStats.test_qc_warnings_4) ... ok test_qc_warnings_5 (test.test_contig_stats.TestContigStats.test_qc_warnings_5) ... ok test_qc_warnings_6 (test.test_contig_stats.TestContigStats.test_qc_warnings_6) ... ok test_qc_warnings_7 (test.test_contig_stats.TestContigStats.test_qc_warnings_7) ... ok test_qc_warnings_8 (test.test_contig_stats.TestContigStats.test_qc_warnings_8) ... ok test_total_size_1 (test.test_contig_stats.TestContigStats.test_total_size_1) ... ok test_total_size_2 (test.test_contig_stats.TestContigStats.test_total_size_2) ... ok test_total_size_3 (test.test_contig_stats.TestContigStats.test_total_size_3) ... ok test_total_size_4 (test.test_contig_stats.TestContigStats.test_total_size_4) ... ok test_iro_exact_1 (test.test_iro.TestIro.test_iro_exact_1) This test is an exact match for SmST1. ... ok test_iro_exact_33 (test.test_iro.TestIro.test_iro_exact_33) This test is an exact match for SmST33. ... ok test_iro_incomplete (test.test_iro.TestIro.test_iro_incomplete) This test is an exact match for only one allele. ... ok test_iro_inexact (test.test_iro.TestIro.test_iro_inexact) This test is an inexact match for SmST33. There are single base changes in iroC and in ... ok test_iro_missing_1 (test.test_iro.TestIro.test_iro_missing_1) This test is a match for SmST1, except that it's missing iroN. ... ok test_iro_novel (test.test_iro.TestIro.test_iro_novel) This test is an exact match for alleles, but an unknown combination. ... ok test_iro_random (test.test_iro.TestIro.test_iro_random) This test has just random sequence and should give no iro call. ... ok test_confidence_meets_threshold_01 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_01) ... ok test_confidence_meets_threshold_02 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_02) ... ok test_confidence_meets_threshold_03 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_03) ... ok test_confidence_meets_threshold_04 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_04) ... ok test_confidence_meets_threshold_05 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_05) ... ok test_confidence_meets_threshold_06 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_06) ... ok test_confidence_meets_threshold_07 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_07) ... ok test_confidence_meets_threshold_08 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_08) ... ok test_confidence_meets_threshold_09 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_09) ... ok test_confidence_meets_threshold_10 (test.test_kaptive.TestKaptive.test_confidence_meets_threshold_10) ... ok test_134 (test.test_mlst.TestMlst.test_134) ... ok test_83 (test.test_mlst.TestMlst.test_83) ... ok test_ba779 (test.test_mlst.TestMlst.test_ba779) ... ok test_chromosome_exact (test.test_mlst.TestMlst.test_chromosome_exact) This test is an exact match for ST23. ... ok test_chromosome_inexact (test.test_mlst.TestMlst.test_chromosome_inexact) This test is is one base off from ST23 (single substitution in mdh_1 of G to A). ... ok test_chromosome_random (test.test_mlst.TestMlst.test_chromosome_random) This test has just random sequence and should give no MLST call. ... ok test_kp_subspecies_1 (test.test_mlst.TestMlst.test_kp_subspecies_1) ... ok test_kp_subspecies_2 (test.test_mlst.TestMlst.test_kp_subspecies_2) ... ok test_kp_subspecies_3 (test.test_mlst.TestMlst.test_kp_subspecies_3) ... ok test_kp_subspecies_4 (test.test_mlst.TestMlst.test_kp_subspecies_4) ... ok test_kp_subspecies_5 (test.test_mlst.TestMlst.test_kp_subspecies_5) ... ok test_kp_subspecies_6 (test.test_mlst.TestMlst.test_kp_subspecies_6) ... ok test_kp_subspecies_7 (test.test_mlst.TestMlst.test_kp_subspecies_7) ... ok test_ozaenae (test.test_mlst.TestMlst.test_ozaenae) ... ok test_rhinoscleromatis (test.test_mlst.TestMlst.test_rhinoscleromatis) ... ok test_unknown_ST (test.test_mlst.TestMlst.test_unknown_ST) This test has exact matches for alleles but in an unknown ST combination ... ok test_res_01 (test.test_res_aac.TestResAac.test_res_01) ... /usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/__init__.py:519: ResourceWarning: unclosed file <_io.TextIOWrapper name='/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM62' mode='r' encoding='utf-8'> matrix = read(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_res_02 (test.test_res_aac.TestResAac.test_res_02) ... ok test_res_03 (test.test_res_aac.TestResAac.test_res_03) ... ok test_res_04 (test.test_res_aac.TestResAac.test_res_04) This is a tricky one (and the one which first highlighted the problem). The best bit-score ... ok test_res_05 (test.test_res_aac.TestResAac.test_res_05) Same as test_res_04, but with the hit on the other strand. ... ok test_exact_aa_match_1 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_1) Simple case: full protein sequence ending in a stop codon. ... ok test_exact_aa_match_2 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_2) These two seqs have a stop codon in the middle but still match exactly. ... ok test_exact_aa_match_3 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_3) These two seqs have a stop codon in the middle and mismatch after the stop. ... ok test_exact_aa_match_4 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_4) These two seqs have a stop codon in the middle and mismatch after the stop. ... ok test_exact_aa_match_5 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_5) These two seqs are non-multiple-of-three in length and match in their remainder. ... ok test_exact_aa_match_6 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_6) These two seqs are non-multiple-of-three in length and match in their remainder. ... ok test_exact_aa_match_7 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_7) These two seqs are non-multiple-of-three in length and don't match in their remainder. ... ok test_exact_aa_match_8 (test.test_res_alleles.TestResAlleles.test_exact_aa_match_8) The first seq's protein sequence contains the second seq's protein sequence. ... ok test_res_01 (test.test_res_alleles.TestResAlleles.test_res_01) ... ok test_res_02 (test.test_res_alleles.TestResAlleles.test_res_02) ... ok test_res_03 (test.test_res_alleles.TestResAlleles.test_res_03) ... ok test_res_04 (test.test_res_alleles.TestResAlleles.test_res_04) ... ok test_res_05 (test.test_res_alleles.TestResAlleles.test_res_05) ... ok test_res_06 (test.test_res_alleles.TestResAlleles.test_res_06) ... ok test_res_07 (test.test_res_alleles.TestResAlleles.test_res_07) ... ok test_res_08 (test.test_res_alleles.TestResAlleles.test_res_08) ... ok test_res_09 (test.test_res_alleles.TestResAlleles.test_res_09) ... ok test_res_10 (test.test_res_alleles.TestResAlleles.test_res_10) ... ok test_res_11 (test.test_res_alleles.TestResAlleles.test_res_11) This test has the ABC-1 gene but with a stop codon in the middle. ... ok test_res_12 (test.test_res_alleles.TestResAlleles.test_res_12) This test has the ABC-1 gene but missing the first (start) codon. ... ok test_res_13 (test.test_res_alleles.TestResAlleles.test_res_13) This test has the ABC-1 gene but at only 50% coverage, so it goes to spurious hits. ... ok test_res_14 (test.test_res_alleles.TestResAlleles.test_res_14) I added this test to catch a weird BLAST-related bug where an exact amino acid match for ... ok test_res_15 (test.test_res_alleles.TestResAlleles.test_res_15) Same as the previous test, but with the nucleotide sequence reverse-complemented. ... ok test_res_16 (test.test_res_alleles.TestResAlleles.test_res_16) I added this test to catch a weird BLAST-related bug where an exact amino acid match for ... ok test_res_17 (test.test_res_alleles.TestResAlleles.test_res_17) Same as the previous test, but with the nucleotide sequence reverse-complemented. ... ok test_res_18 (test.test_res_alleles.TestResAlleles.test_res_18) This is the uncomplicated case for a OKP-B-6^ result (later tests cover more challenging ... ok test_res_19 (test.test_res_alleles.TestResAlleles.test_res_19) Same as the previous test, but with the nucleotide sequence reverse-complemented. ... ok test_res_20 (test.test_res_alleles.TestResAlleles.test_res_20) I added this test to catch a bug where there is an exact amino acid match but inexact ... ok test_res_21 (test.test_res_alleles.TestResAlleles.test_res_21) Same as the previous test, but with the nucleotide sequence reverse-complemented. ... ok test_res_22 (test.test_res_alleles.TestResAlleles.test_res_22) I added this test to catch a bug where there is an exact amino acid match but inexact ... ok test_res_23 (test.test_res_alleles.TestResAlleles.test_res_23) Same as the previous test, but with the nucleotide sequence reverse-complemented. ... ok test_both_genes_intact (test.test_res_mgrb_pmrb.TestResMgrBPmrB.test_both_genes_intact) ... ok test_mgrb_missing (test.test_res_mgrb_pmrb.TestResMgrBPmrB.test_mgrb_missing) ... ok test_mgrb_missing_non_kp_complex (test.test_res_mgrb_pmrb.TestResMgrBPmrB.test_mgrb_missing_non_kp_complex) Setting the Kp complex variable to False should turn off the MgrB/PmrB tests. ... ok test_pmrb_early_stop (test.test_res_mgrb_pmrb.TestResMgrBPmrB.test_pmrb_early_stop) This tests an early stop mutation (without a frameshift) in pmrB. ... ok test_pmrb_early_stop_SRR2098701 (test.test_res_mgrb_pmrb.TestResMgrBPmrB.test_pmrb_early_stop_SRR2098701) ... ok test_pmrb_frameshift (test.test_res_mgrb_pmrb.TestResMgrBPmrB.test_pmrb_frameshift) A frameshift in pmrB should cause an early stop and lead to a colisitin resistance call. ... ok test_both_genes_intact (test.test_res_omp.TestResOmp.test_both_genes_intact) ... ok test_ompk35_early_stop (test.test_res_omp.TestResOmp.test_ompk35_early_stop) This tests an early stop mutation (without a frameshift) in OmpK35. ... ok test_ompk35_frameshift (test.test_res_omp.TestResOmp.test_ompk35_frameshift) A frameshift in OmpK35 should cause an early stop and lead to a carbapenem resistance call. ... ok test_ompk36_missing (test.test_res_omp.TestResOmp.test_ompk36_missing) ... ok test_ompk36gd (test.test_res_omp.TestResOmp.test_ompk36gd) ... ok test_ompk36td (test.test_res_omp.TestResOmp.test_ompk36td) ... ok test_ompk36td_non_kp_complex (test.test_res_omp.TestResOmp.test_ompk36td_non_kp_complex) Setting the Kp complex variable to False should turn off the OmpK tests. ... ok test_gyra (test.test_res_qrdr.TestResGyrAParC.test_gyra) ... ok test_gyra_and_parc (test.test_res_qrdr.TestResGyrAParC.test_gyra_and_parc) ... ok test_gyra_and_parc_non_kp_complex (test.test_res_qrdr.TestResGyrAParC.test_gyra_and_parc_non_kp_complex) Setting the Kp complex variable to False should turn off the QRDR tests. ... ok test_no_mutations (test.test_res_qrdr.TestResGyrAParC.test_no_mutations) ... ok test_parc (test.test_res_qrdr.TestResGyrAParC.test_parc) ... ok test_tem (test.test_res_tem.TestResTem.test_tem) ... ok test_rmp_19 (test.test_rmp.TestRmp.test_rmp_19) This test is an exact match for RmST19, an ST without any truncated alleles. ... ok test_rmp_21 (test.test_rmp.TestRmp.test_rmp_21) This test is an exact match for RmST21, an ST with a truncated allele. ... ok test_rmp_missing_1 (test.test_rmp.TestRmp.test_rmp_missing_1) This test is a match for RmST1, except that it's missing rmpC. ... ok test_rmp_novel (test.test_rmp.TestRmp.test_rmp_novel) This test is an exact match for alleles, but an unknown combination. ... ok test_rmp_random (test.test_rmp.TestRmp.test_rmp_random) This test has just random sequence and should give no rmp call. ... ok test_rmpa2_exact (test.test_rmp.TestRmp.test_rmpa2_exact) This test has an exact match for rmpA2_1. ... ok test_rmpa2_exact_truncated (test.test_rmp.TestRmp.test_rmpa2_exact_truncated) This test has an exact match for rmpA2_7. ... ok test_rmpa2_inexact (test.test_rmp.TestRmp.test_rmpa2_inexact) This test has an inexact match for rmpA2_1. ... ok test_rmpa2_random (test.test_rmp.TestRmp.test_rmpa2_random) This test has just random sequence and should give no rmpA2 call. ... ok test_bla_class_01 (test.test_shv.TestShvMutations.test_bla_class_01) ... ok test_bla_class_02 (test.test_shv.TestShvMutations.test_bla_class_02) ... ok test_bla_class_03 (test.test_shv.TestShvMutations.test_bla_class_03) ... ok test_bla_class_04 (test.test_shv.TestShvMutations.test_bla_class_04) ... ok test_get_class_changing_mutations_01 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_01) ... ok test_get_class_changing_mutations_02 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_02) ... ok test_get_class_changing_mutations_03 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_03) ... ok test_get_class_changing_mutations_04 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_04) ... ok test_get_class_changing_mutations_05 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_05) ... ok test_get_class_changing_mutations_06 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_06) ... ok test_get_class_changing_mutations_07 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_07) ... ok test_get_class_changing_mutations_08 (test.test_shv.TestShvMutations.test_get_class_changing_mutations_08) ... ok test_shv_01 (test.test_shv.TestShvMutations.test_shv_01) This test has an exact match for SHV-1. ... ok test_shv_02 (test.test_shv.TestShvMutations.test_shv_02) This test has a match for SHV-1 with a mutation at site 238 (G -> Y). This changes the ... ok test_shv_03 (test.test_shv.TestShvMutations.test_shv_03) Same as test 2, but the gene is on the reverse strand. ... ok test_shv_04 (test.test_shv.TestShvMutations.test_shv_04) This test has a match for SHV-1 with a mutation at site 50 (G -> Y). This doesn't change ... ok test_shv_05 (test.test_shv.TestShvMutations.test_shv_05) This test has an exact match for SHV-29. ... ok test_shv_06 (test.test_shv.TestShvMutations.test_shv_06) This test has SHV-29 plus an inhibition mutation. ... ok test_shv_07 (test.test_shv.TestShvMutations.test_shv_07) This test has SHV-1 with position 238 deleted. Since it's not in the omega loop, this isn't ... ok test_shv_08 (test.test_shv.TestShvMutations.test_shv_08) This test has SHV-1 with a synonymous mutation in the omega loop (so not reported). ... ok test_shv_09 (test.test_shv.TestShvMutations.test_shv_09) This test has SHV-1 with a nonsynonymous mutation in the omega loop (so it is reported). ... ok test_citrobacter (test.test_species.TestKpComplex.test_citrobacter) ... ok test_klebsiella_aerogenes (test.test_species.TestKpComplex.test_klebsiella_aerogenes) ... ok test_klebsiella_africanensis (test.test_species.TestKpComplex.test_klebsiella_africanensis) ... ok test_klebsiella_grimontii (test.test_species.TestKpComplex.test_klebsiella_grimontii) ... ok test_klebsiella_michiganensis (test.test_species.TestKpComplex.test_klebsiella_michiganensis) ... ok test_klebsiella_oxytoca (test.test_species.TestKpComplex.test_klebsiella_oxytoca) ... ok test_klebsiella_pneumoniae (test.test_species.TestKpComplex.test_klebsiella_pneumoniae) ... ok test_klebsiella_quasipneumoniae_subsp_quasipneumoniae (test.test_species.TestKpComplex.test_klebsiella_quasipneumoniae_subsp_quasipneumoniae) ... ok test_klebsiella_quasipneumoniae_subsp_similipneumoniae (test.test_species.TestKpComplex.test_klebsiella_quasipneumoniae_subsp_similipneumoniae) ... ok test_klebsiella_quasivariicola (test.test_species.TestKpComplex.test_klebsiella_quasivariicola) ... ok test_klebsiella_variicola_subsp_tropicalensis (test.test_species.TestKpComplex.test_klebsiella_variicola_subsp_tropicalensis) ... ok test_klebsiella_variicola_subsp_variicola (test.test_species.TestKpComplex.test_klebsiella_variicola_subsp_variicola) ... ok test_raoultella_ornithinolytica (test.test_species.TestKpComplex.test_raoultella_ornithinolytica) ... ok test_raoultella_planticola (test.test_species.TestKpComplex.test_raoultella_planticola) ... ok test_raoultella_terrigena (test.test_species.TestKpComplex.test_raoultella_terrigena) ... ok test_salmonella (test.test_species.TestKpComplex.test_salmonella) ... ok test_citrobacter (test.test_species.TestSpecies.test_citrobacter) ... ok test_klebsiella_aerogenes (test.test_species.TestSpecies.test_klebsiella_aerogenes) ... ok test_klebsiella_africana (test.test_species.TestSpecies.test_klebsiella_africana) ... ok test_klebsiella_grimontii (test.test_species.TestSpecies.test_klebsiella_grimontii) ... ok test_klebsiella_indica (test.test_species.TestSpecies.test_klebsiella_indica) ... ok test_klebsiella_michiganensis (test.test_species.TestSpecies.test_klebsiella_michiganensis) ... ok test_klebsiella_oxytoca (test.test_species.TestSpecies.test_klebsiella_oxytoca) ... ok test_klebsiella_pasteurii (test.test_species.TestSpecies.test_klebsiella_pasteurii) ... ok test_klebsiella_pneumoniae (test.test_species.TestSpecies.test_klebsiella_pneumoniae) ... ok test_klebsiella_quasipneumoniae_subsp_quasipneumoniae (test.test_species.TestSpecies.test_klebsiella_quasipneumoniae_subsp_quasipneumoniae) ... ok test_klebsiella_quasipneumoniae_subsp_similipneumoniae (test.test_species.TestSpecies.test_klebsiella_quasipneumoniae_subsp_similipneumoniae) ... ok test_klebsiella_quasivariicola (test.test_species.TestSpecies.test_klebsiella_quasivariicola) ... ok test_klebsiella_spallanzanii (test.test_species.TestSpecies.test_klebsiella_spallanzanii) ... ok test_klebsiella_variicola_subsp_tropicalensis (test.test_species.TestSpecies.test_klebsiella_variicola_subsp_tropicalensis) ... ok test_klebsiella_variicola_subsp_variicola (test.test_species.TestSpecies.test_klebsiella_variicola_subsp_variicola) ... ok test_raoultella_ornithinolytica (test.test_species.TestSpecies.test_raoultella_ornithinolytica) ... ok test_raoultella_planticola (test.test_species.TestSpecies.test_raoultella_planticola) ... ok test_raoultella_terrigena (test.test_species.TestSpecies.test_raoultella_terrigena) ... ok test_salmonella (test.test_species.TestSpecies.test_salmonella) ... ok test_yersinia_unknown (test.test_species.TestSpecies.test_yersinia_unknown) ... ok test_nothing (test.test_summary.TestResScore.test_nothing) ... ok test_res_counts_1 (test.test_summary.TestResScore.test_res_counts_1) ... ok test_res_counts_10 (test.test_summary.TestResScore.test_res_counts_10) Resistance-by-truncation should add to the class count but not to the gene count (because ... ok test_res_counts_11 (test.test_summary.TestResScore.test_res_counts_11) Spurious hits should not add to either the gene or class counts. ... ok test_res_counts_2 (test.test_summary.TestResScore.test_res_counts_2) ... ok test_res_counts_3 (test.test_summary.TestResScore.test_res_counts_3) Intrinsic Bla genes should not add to the counts. ... ok test_res_counts_4 (test.test_summary.TestResScore.test_res_counts_4) Bla genes in columns other than 'Bla_chr' (e.g. 'Bla_ESBL_acquired') should add to the ... ok test_res_counts_5 (test.test_summary.TestResScore.test_res_counts_5) Bla genes in columns other than 'Bla_chr' (e.g. 'Bla_acquired') should add to the counts. ... ok test_res_counts_6 (test.test_summary.TestResScore.test_res_counts_6) Omp gene truncations should not add to the gene or class counts. ... ok test_res_counts_7 (test.test_summary.TestResScore.test_res_counts_7) Mutations should add to the class count but not to the gene count (because that is for ... ok test_res_counts_8 (test.test_summary.TestResScore.test_res_counts_8) Mutations should add to the class count but not to the gene count (because that is for ... ok test_res_counts_9 (test.test_summary.TestResScore.test_res_counts_9) Mutations should add to the class count but not to the gene count (because that is for ... ok test_res_score_1 (test.test_summary.TestResScore.test_res_score_1) ... ok test_res_score_2 (test.test_summary.TestResScore.test_res_score_2) ... ok test_res_score_3 (test.test_summary.TestResScore.test_res_score_3) ... ok test_res_score_4 (test.test_summary.TestResScore.test_res_score_4) ... ok test_res_score_5 (test.test_summary.TestResScore.test_res_score_5) ... ok test_res_score_6 (test.test_summary.TestResScore.test_res_score_6) ... ok test_res_score_7 (test.test_summary.TestResScore.test_res_score_7) ... ok test_res_score_8 (test.test_summary.TestResScore.test_res_score_8) ... ok test_vir_score_1 (test.test_summary.TestResScore.test_vir_score_1) ... ok test_vir_score_2 (test.test_summary.TestResScore.test_vir_score_2) ... ok test_vir_score_3 (test.test_summary.TestResScore.test_vir_score_3) ... ok test_vir_score_4 (test.test_summary.TestResScore.test_vir_score_4) ... ok test_vir_score_5 (test.test_summary.TestResScore.test_vir_score_5) ... ok test_vir_score_6 (test.test_summary.TestResScore.test_vir_score_6) ... ok test_vir_score_7 (test.test_summary.TestResScore.test_vir_score_7) ... ok ---------------------------------------------------------------------- Ran 203 tests in 47.429s OK {'Sul_acquired': 'sul2^', 'Tet_acquired': '-', 'Bla_acquired': '-', 'Bla_inhR_acquired': '-', 'Bla_ESBL_acquired': '-', 'Bla_ESBL_inhR_acquired': '-', 'Bla_Carb_acquired': '-', 'Bla_chr': '-', 'SHV_mutations': '-', 'Omp_mutations': 'OmpK35-0%;OmpK36-0%', 'Col_mutations': 'MgrB-0%;PmrB-0%', 'Flq_mutations': '-', 'truncated_resistance_hits': '-', 'spurious_resistance_hits': '-'} {'Sul_acquired': '-', 'Tet_acquired': '-', 'Bla_acquired': '-', 'Bla_inhR_acquired': '-', 'Bla_ESBL_acquired': '-', 'Bla_ESBL_inhR_acquired': '-', 'Bla_Carb_acquired': '-', 'Bla_chr': 'OKP-B-6^', 'SHV_mutations': '-', 'Omp_mutations': 'OmpK35-0%;OmpK36-0%', 'Col_mutations': 'MgrB-0%;PmrB-0%', 'Flq_mutations': '-', 'truncated_resistance_hits': '-', 'spurious_resistance_hits': '-'} {'Sul_acquired': '-', 'Tet_acquired': '-', 'Bla_acquired': '-', 'Bla_inhR_acquired': '-', 'Bla_ESBL_acquired': '-', 'Bla_ESBL_inhR_acquired': '-', 'Bla_Carb_acquired': '-', 'Bla_chr': 'OKP-B-6^', 'SHV_mutations': '-', 'Omp_mutations': 'OmpK35-0%;OmpK36-0%', 'Col_mutations': 'MgrB-0%;PmrB-0%', 'Flq_mutations': '-', 'truncated_resistance_hits': '-', 'spurious_resistance_hits': '-'} {'Sul_acquired': '-', 'Tet_acquired': '-', 'Bla_acquired': '-', 'Bla_inhR_acquired': '-', 'Bla_ESBL_acquired': '-', 'Bla_ESBL_inhR_acquired': '-', 'Bla_Carb_acquired': '-', 'Bla_chr': 'OKP-B-6^', 'SHV_mutations': '-', 'Omp_mutations': 'OmpK35-0%;OmpK36-0%', 'Col_mutations': 'MgrB-0%;PmrB-0%', 'Flq_mutations': '-', 'truncated_resistance_hits': '-', 'spurious_resistance_hits': '-'} create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:275: /usr/bin/python3 setup.py install --root /<>/debian/tmp running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing Kleborate.egg-info/PKG-INFO writing dependency_links to Kleborate.egg-info/dependency_links.txt writing entry points to Kleborate.egg-info/entry_points.txt writing requirements to Kleborate.egg-info/requires.txt writing top-level names to Kleborate.egg-info/top_level.txt reading manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'kleborate/ICEKp_references' warning: no directories found matching 'kaptive/reference_database' warning: no directories found matching 'kaptive/sample_data' adding license file 'LICENSE' writing manifest file 'Kleborate.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'kleborate.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'kleborate.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'kleborate.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'kleborate.data' to be distributed and are already explicitly excluding 'kleborate.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'kleborate.data.ICEKp_references' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'kleborate.data.ICEKp_references' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'kleborate.data.ICEKp_references' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'kleborate.data.ICEKp_references' to be distributed and are already explicitly excluding 'kleborate.data.ICEKp_references' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running install_lib creating /<>/debian/tmp/usr creating /<>/debian/tmp/usr/lib creating /<>/debian/tmp/usr/lib/python3.11 creating /<>/debian/tmp/usr/lib/python3.11/dist-packages creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/mlstBLAST.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/truncation.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/resBLAST.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/misc.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/help_formatter.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/blastn.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/contig_stats.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/shv_mutations.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/__main__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/rmpA.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/species.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/__init__.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate copying /<>/.pybuild/cpython3_3.11/build/kleborate/version.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/shv_mutations.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/mlstBLAST.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/kaptive.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/blastn.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/species.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/help_formatter.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/contig_stats.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/__main__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/version.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/misc.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/truncation.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/__init__.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/resBLAST.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ copying /<>/.pybuild/cpython3_3.11/build/kleborate/__pycache__/rmpA.cpython-311.pyc -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__pycache__ creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/iro_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/Klebsiella_pneumoniae.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/iuc_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/YbST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/CbST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ybt_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/SmST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/kpneumoniae.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/rmp_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/CARD_v3.1.13.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/MgrB_and_PmrB.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/RmST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/QRDR_120.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/wzi.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/CARD_AMR_clustered.csv -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/wzi.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/species_mash_sketches.msh -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/OmpK.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data creating /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp10.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp11.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp17.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp21.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp13.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp8.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp9.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp16.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp20.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp15.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp1.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp12.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp2.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp19.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp18.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp22.gff -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp3.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp5.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp7.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp6.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp4.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/ICEKp_references/ICEKp14.embl -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ICEKp_references copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/AbST_profiles.txt -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/rmpA2.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/data/clb_alleles.fasta -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data copying /<>/.pybuild/cpython3_3.11/build/kleborate/kaptive.py -> /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/mlstBLAST.py to mlstBLAST.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/truncation.py to truncation.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/resBLAST.py to resBLAST.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/misc.py to misc.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/help_formatter.py to help_formatter.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/blastn.py to blastn.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/contig_stats.py to contig_stats.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/shv_mutations.py to shv_mutations.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__main__.py to __main__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/rmpA.py to rmpA.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/species.py to species.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/version.py to version.cpython-311.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/kaptive.py to kaptive.cpython-311.pyc running install_egg_info Copying Kleborate.egg-info to /<>/debian/tmp/usr/lib/python3.11/dist-packages/Kleborate-2.3.2.egg-info Skipping SOURCES.txt running install_scripts Installing kleborate script to /<>/debian/tmp/usr/bin Building BLAST databases with makeblastdb: makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/CARD_v3.1.13.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/clb_alleles.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/rmpA2.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/iro_alleles.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/iuc_alleles.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/rmp_alleles.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/wzi.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/ybt_alleles.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/MgrB_and_PmrB.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/OmpK.fasta -blastdb_version 4 makeblastdb -dbtype nucl -in /<>/debian/tmp/usr/lib/python3.11/dist-packages/kleborate/data/QRDR_120.fasta -blastdb_version 4  _ __ _ ______ ____ ____ _____ _______ ______ | | / /| | | ____| _ \ / __ \| __ \ /\|__ __| ____| | |/ / | | | |__ | |_) | | | | |__) | / \ | | | |__ | < | | | __| | _ <| | | | _ / / /\ \ | | | __| | |\ \ | |___| |____| |_) | |__| | | \ \/ ____ \| | | |____ |_| \_\|_____|______|____/ \____/|_| \_\/ \_\_| |______|  Kleborate is installed and ready to use! Example commands: kleborate --help kleborate -o results.txt -a *.fasta kleborate --resistance -o results.txt -a *.fasta kleborate --all -o results.txt -a *.fasta debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install # fasta.nin files will be (re)build at package installation time to not # contain build path. Other fasta.* are rebuilt by makeblastdb and may # cause inconsistencies in the package itself when makeblastdb is # upgraded and changes format, e.g. during a major operating system # upgrade. See Bug#1036743. find debian -name "*.fasta.nin" -delete find debian -name "*.fasta.ndb" -delete find debian -name "*.fasta.ntf" -delete make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -name "*.msh" -exec chmod -x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 153 pkgstriptranslations: processing kleborate (in debian/kleborate); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/kleborate/DEBIAN/control, package kleborate, directory debian/kleborate pkgstripfiles: Truncating usr/share/doc/kleborate/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package kleborate ... pkgstripfiles: No PNG files. dpkg-deb: building package 'kleborate' in '../kleborate_2.3.2-1_s390x.deb'. dpkg-genbuildinfo --build=any -O../kleborate_2.3.2-1_s390x.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../kleborate_2.3.2-1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-07-20T05:15:35Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kleborate_2.3.2-1_s390x.changes: -------------------------------- Format: 1.8 Date: Thu, 20 Jul 2023 00:23:19 +0200 Source: kleborate Binary: kleborate Built-For-Profiles: noudeb Architecture: s390x Version: 2.3.2-1 Distribution: mantic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Étienne Mollier Description: kleborate - tool to screen Klebsiella genome assemblies Changes: kleborate (2.3.2-1) unstable; urgency=medium . * New upstream version * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Checksums-Sha1: 9582bce074222f110e08bcb6d317ee1c1514cc58 8008 kleborate_2.3.2-1_s390x.buildinfo 9e58288eaf02a561c9e04b1986c24d5007ba071a 8722290 kleborate_2.3.2-1_s390x.deb Checksums-Sha256: 0b1ec3068259f264511bd3f2245db02d9316931b5606b201781cfa4ec938f254 8008 kleborate_2.3.2-1_s390x.buildinfo ff6ff1055329d7c63ffdbba6744479e188bb5573d0bfc0c020b46521e26e1fa0 8722290 kleborate_2.3.2-1_s390x.deb Files: d3cffe252f860168d97559bb13a1a65f 8008 science optional kleborate_2.3.2-1_s390x.buildinfo d8d94fb7a0c0192309c44eab08aec54d 8722290 science optional kleborate_2.3.2-1_s390x.deb /<>/kleborate_2.3.2-1_s390x.changes.new could not be renamed to /<>/kleborate_2.3.2-1_s390x.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: kleborate Binary: kleborate Architecture: s390x Version: 2.3.2-1 Checksums-Md5: d8d94fb7a0c0192309c44eab08aec54d 8722290 kleborate_2.3.2-1_s390x.deb Checksums-Sha1: 9e58288eaf02a561c9e04b1986c24d5007ba071a 8722290 kleborate_2.3.2-1_s390x.deb Checksums-Sha256: ff6ff1055329d7c63ffdbba6744479e188bb5573d0bfc0c020b46521e26e1fa0 8722290 kleborate_2.3.2-1_s390x.deb Build-Origin: Ubuntu Build-Architecture: s390x Build-Date: Thu, 20 Jul 2023 05:15:34 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13ubuntu1), base-passwd (= 3.6.1), bash (= 5.2.15-2ubuntu1), binutils (= 2.40.90.20230714-2ubuntu1), binutils-common (= 2.40.90.20230714-2ubuntu1), binutils-s390x-linux-gnu (= 2.40.90.20230714-2ubuntu1), bsdextrautils (= 2.38.1-5ubuntu2), bsdutils (= 1:2.38.1-5ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), coreutils (= 9.1-1ubuntu2), cpp (= 4:13.1.0-4ubuntu2), cpp-12 (= 12.3.0-6ubuntu1), cpp-13 (= 13.1.0-8ubuntu1), dash (= 0.5.12-2ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.4ubuntu3), debianutils (= 5.8-1), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-python (= 6.20230603), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.22ubuntu1), dpkg-dev (= 1.21.22ubuntu1), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-5), fontconfig-config (= 2.14.1-4ubuntu1), fonts-dejavu-core (= 2.37-6), fonts-urw-base35 (= 20200910-7), g++ (= 4:13.1.0-4ubuntu2), g++-13 (= 13.1.0-8ubuntu1), gcc (= 4:13.1.0-4ubuntu2), gcc-12 (= 12.3.0-6ubuntu1), gcc-12-base (= 12.3.0-6ubuntu1), gcc-13 (= 13.1.0-8ubuntu1), gcc-13-base (= 13.1.0-8ubuntu1), gettext (= 0.21-13), gettext-base (= 0.21-13), grep (= 3.11-1), groff-base (= 1.23.0-2), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), init-system-helpers (= 1.65.2ubuntu1), intltool-debian (= 0.35.0+20060710.6), kaptive (= 2.0.4-1), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.1.0-8ubuntu1), libatomic1 (= 13.1.0-8ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libbinutils (= 2.40.90.20230714-2ubuntu1), libblas3 (= 3.11.0-2), libblkid1 (= 2.38.1-5ubuntu2), libbrotli1 (= 1.0.9-2build8), libbsd0 (= 0.11.7-4), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.37-0ubuntu2), libc-dev-bin (= 2.37-0ubuntu2), libc6 (= 2.37-0ubuntu2), libc6-dev (= 2.37-0ubuntu2), libcairo2 (= 1.17.8-2), libcap-ng0 (= 0.8.3-1build2), libcap2 (= 1:2.66-4ubuntu1), libcapnp-0.9.2 (= 0.9.2-3), libcc1-0 (= 13.1.0-8ubuntu1), libcom-err2 (= 1.47.0-1ubuntu2), libcrypt-dev (= 1:4.4.35-1), libcrypt1 (= 1:4.4.35-1), libctf-nobfd0 (= 2.40.90.20230714-2ubuntu1), libctf0 (= 2.40.90.20230714-2ubuntu1), libdb5.3 (= 5.3.28+dfsg2-1), libdebconfclient0 (= 0.270ubuntu1), libdebhelper-perl (= 13.11.4ubuntu3), libdeflate0 (= 1.15-1), libdpkg-perl (= 1.21.22ubuntu1), libdw1 (= 0.189-4), libelf1 (= 0.189-4), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libfontconfig1 (= 2.14.1-4ubuntu1), libfontenc1 (= 1:1.1.4-1build3), libfreetype6 (= 2.13.0+dfsg-1), libfribidi0 (= 1.0.13-3), libgcc-12-dev (= 12.3.0-6ubuntu1), libgcc-13-dev (= 13.1.0-8ubuntu1), libgcc-s1 (= 13.1.0-8ubuntu1), libgcrypt20 (= 1.10.2-2ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgfortran5 (= 13.1.0-8ubuntu1), libglib2.0-0 (= 2.77.0-0ubuntu2), libgmp10 (= 2:6.2.1+dfsg1-1.1ubuntu2), libgomp1 (= 13.1.0-8ubuntu1), libgpg-error0 (= 1.46-1), libgraphite2-3 (= 1.3.14-1build2), libgsl27 (= 2.7.1+dfsg-5), libgslcblas0 (= 2.7.1+dfsg-5), libgssapi-krb5-2 (= 1.20.1-2), libharfbuzz0b (= 8.0.1-1), libicu72 (= 72.1-3ubuntu2), libimagequant0 (= 2.17.0-1), libisl23 (= 0.26-3), libitm1 (= 13.1.0-8ubuntu1), libjansson4 (= 2.14-2), libjbig0 (= 2.1-6.1ubuntu1), libjpeg-turbo8 (= 2.1.5-2ubuntu1), libjpeg8 (= 8c-2ubuntu11), libk5crypto3 (= 1.20.1-2), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-2), libkrb5support0 (= 1.20.1-2), liblapack3 (= 3.11.0-2), liblcms2-2 (= 2.14-2), liblmdb0 (= 0.9.24-1build2), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmbedcrypto7 (= 2.28.3-1), libmbedtls14 (= 2.28.3-1), libmbedx509-1 (= 2.28.3-1), libmd0 (= 1.1.0-1), libmount1 (= 2.38.1-5ubuntu2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libmurmurhash2 (= 1.5-3), libncursesw6 (= 6.4+20230625-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libopenjp2-7 (= 2.5.0-2), libpam-modules (= 1.5.2-6ubuntu1), libpam-modules-bin (= 1.5.2-6ubuntu1), libpam-runtime (= 1.5.2-6ubuntu1), libpam0g (= 1.5.2-6ubuntu1), libpcre2-8-0 (= 10.42-2), libpcre3 (= 2:8.39-15), libperl5.36 (= 5.36.0-7ubuntu1), libpipeline1 (= 1.5.7-1), libpixman-1-0 (= 0.42.2-1), libpng16-16 (= 1.6.40-1), libpython3-stdlib (= 3.11.4-5), libpython3.11-minimal (= 3.11.4-1), libpython3.11-stdlib (= 3.11.4-1), libraqm0 (= 0.10.1-1), libreadline8 (= 8.2-1.3), libseccomp2 (= 2.5.4-1ubuntu3), libselinux1 (= 3.5-1), libsframe1 (= 2.40.90.20230714-2ubuntu1), libsmartcols1 (= 2.38.1-5ubuntu2), libsqlite3-0 (= 3.42.0-1), libssl3 (= 3.0.9-1ubuntu1), libstdc++-13-dev (= 13.1.0-8ubuntu1), libstdc++6 (= 13.1.0-8ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 253.5-1ubuntu1), libtiff6 (= 4.5.0-6ubuntu1), libtinfo6 (= 6.4+20230625-1), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-6), libubsan1 (= 13.1.0-8ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 253.5-1ubuntu1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-5ubuntu2), libwebp7 (= 1.2.4-0.2), libwebpdemux2 (= 1.2.4-0.2), libwebpmux3 (= 1.2.4-0.2), libx11-6 (= 2:1.8.6-1), libx11-data (= 2:1.8.6-1), libxau6 (= 1:1.0.9-1build5), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxml2 (= 2.9.14+dfsg-1.3), libxrender1 (= 1:0.9.10-1.1), libzstd1 (= 1.5.5+dfsg2-1ubuntu2), linux-libc-dev (= 6.3.0-7.7), login (= 1:4.13+dfsg1-1ubuntu1), lsb-base (= 11.6), lto-disabled-list (= 41), m4 (= 1.4.19-3), mailcap (= 3.70+nmu1ubuntu1), make (= 4.3-4.1build1), man-db (= 2.11.2-2), mash (= 2.3+dfsg-3build1), mawk (= 1.3.4.20230525-1), media-types (= 10.1.0), mime-support (= 3.66), ncbi-blast+ (= 2.12.0+ds-3build1), ncbi-data (= 6.1.20170106+dfsg1-10), ncurses-base (= 6.4+20230625-1), ncurses-bin (= 6.4+20230625-1), patch (= 2.7.6-7build2), perl (= 5.36.0-7ubuntu1), perl-base (= 5.36.0-7ubuntu1), perl-modules-5.36 (= 5.36.0-7ubuntu1), po-debconf (= 1.0.21+nmu1), python3 (= 3.11.4-5), python3-biopython (= 1.81+dfsg-1), python3-cairo (= 1.24.0-1), python3-distutils (= 3.11.4-1), python3-freetype (= 2.4.0-1), python3-lib2to3 (= 3.11.4-1), python3-minimal (= 3.11.4-5), python3-numpy (= 1:1.24.2-1), python3-pil (= 10.0.0-1), python3-pkg-resources (= 68.0.0-1), python3-reportlab (= 4.0.4-9), python3-rlpycairo (= 0.3.0-2), python3-setuptools (= 68.0.0-1), python3.11 (= 3.11.4-1), python3.11-minimal (= 3.11.4-1), readline-common (= 8.2-1.3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sgml-base (= 1.31), sysvinit-utils (= 3.06-4ubuntu1), tar (= 1.34+dfsg-1.2ubuntu1), ttf-bitstream-vera (= 1.10-8.2), util-linux (= 2.38.1-5ubuntu2), util-linux-extra (= 2.38.1-5ubuntu2), w3c-sgml-lib (= 1.3-3), x11-common (= 1:7.7+23ubuntu2), xfonts-encodings (= 1:1.0.5-0ubuntu2), xfonts-utils (= 1:7.7+6build2), xml-core (= 0.18+nmu1), xz-utils (= 5.4.1-0.2), zlib1g (= 1:1.2.13.dfsg-1ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1689805399" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kleborate_2.3.2-1_s390x.deb --------------------------- new Debian package, version 2.0. size 8722290 bytes: control archive=3812 bytes. 1035 bytes, 23 lines control 9044 bytes, 93 lines md5sums 717 bytes, 36 lines * postinst #!/bin/sh 768 bytes, 34 lines * prerm #!/bin/sh Package: kleborate Version: 2.3.2-1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 61971 Depends: python3-biopython, python3:any, ncbi-blast+, mash, kaptive, kaptive-data, python3-distutils Section: science Priority: optional Homepage: https://github.com/katholt/Kleborate Description: tool to screen Klebsiella genome assemblies Kleborate is a tool to screen Klebsiella genome assemblies for: . * MLST sequence type * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.) * ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb) * virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2) * antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive drwxr-xr-x root/root 0 2023-07-19 22:23 ./ drwxr-xr-x root/root 0 2023-07-19 22:23 ./usr/ drwxr-xr-x root/root 0 2023-07-19 22:23 ./usr/bin/ -rwxr-xr-x root/root 968 2023-07-19 22:23 ./usr/bin/kleborate drwxr-xr-x root/root 0 2023-07-19 22:23 ./usr/lib/ drwxr-xr-x root/root 0 2023-07-19 22:23 ./usr/lib/python3/ drwxr-xr-x root/root 0 2023-07-19 22:23 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2023-07-19 22:23 ./usr/lib/python3/dist-packages/Kleborate-2.3.2.egg-info/ -rw-r--r-- root/root 3144 2023-07-19 22:23 ./usr/lib/python3/dist-packages/Kleborate-2.3.2.egg-info/PKG-INFO -rw-r--r-- root/root 1 2023-07-19 22:23 ./usr/lib/python3/dist-packages/Kleborate-2.3.2.egg-info/dependency_links.txt -rw-r--r-- root/root 54 2023-07-19 22:23 ./usr/lib/python3/dist-packages/Kleborate-2.3.2.egg-info/entry_points.txt -rw-r--r-- root/root 1 2023-07-19 22:23 ./usr/lib/python3/dist-packages/Kleborate-2.3.2.egg-info/not-zip-safe -rw-r--r-- root/root 0 2023-07-19 22:23 ./usr/lib/python3/dist-packages/Kleborate-2.3.2.egg-info/requires.txt -rw-r--r-- root/root 18 2023-07-19 22:23 ./usr/lib/python3/dist-packages/Kleborate-2.3.2.egg-info/top_level.txt drwxr-xr-x root/root 0 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/ -rw-r--r-- root/root 0 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/__init__.py -rw-r--r-- root/root 27543 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/__main__.py -rw-r--r-- root/root 5846 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/blastn.py -rw-r--r-- root/root 2916 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/contig_stats.py drwxr-xr-x root/root 0 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/ -rw-r--r-- root/root 2034 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/AbST_profiles.txt -rw-r--r-- root/root 246517 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/CARD_AMR_clustered.csv -rw-r--r-- root/root 2503292 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta -rw-r--r-- root/root 245794 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta.nhr -rw-r--r-- root/root 607403 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta.nsq -rw-r--r-- root/root 3178 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/CbST_profiles.txt drwxr-xr-x root/root 0 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ -rw-r--r-- root/root 159849 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp1.embl -rw-r--r-- root/root 288072 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp10.embl -rw-r--r-- root/root 200467 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp11.embl -rw-r--r-- root/root 209427 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp12.embl -rw-r--r-- root/root 135487 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp13.embl -rw-r--r-- root/root 156338 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp14.embl -rw-r--r-- root/root 98000 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp15.gff -rw-r--r-- root/root 76259 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp16.gff -rw-r--r-- root/root 62700 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp17.gff -rw-r--r-- root/root 70640 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp18.gff -rw-r--r-- root/root 46679 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp19.gff -rw-r--r-- root/root 132081 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp2.embl -rw-r--r-- root/root 68397 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp20.gff -rw-r--r-- root/root 69836 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp21.gff -rw-r--r-- root/root 132015 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp22.gff -rw-r--r-- root/root 133407 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp3.embl -rw-r--r-- root/root 123468 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp4.embl -rw-r--r-- root/root 139146 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp5.embl -rw-r--r-- root/root 143055 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp6.embl -rw-r--r-- root/root 179088 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp7.embl -rw-r--r-- root/root 95993 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp8.embl -rw-r--r-- root/root 119119 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ICEKp_references/ICEKp9.embl -rw-r--r-- root/root 1354966 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta -rw-r--r-- root/root 215766 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta.nhr -rw-r--r-- root/root 328075 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta.nsq -rw-r--r-- root/root 1256 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/MgrB_and_PmrB.fasta -rw-r--r-- root/root 134 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/MgrB_and_PmrB.fasta.nhr -rw-r--r-- root/root 313 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/MgrB_and_PmrB.fasta.nsq -rw-r--r-- root/root 2202 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/OmpK.fasta -rw-r--r-- root/root 138 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/OmpK.fasta.nhr -rw-r--r-- root/root 549 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/OmpK.fasta.nsq -rw-r--r-- root/root 733 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/QRDR_120.fasta -rw-r--r-- root/root 134 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/QRDR_120.fasta.nhr -rw-r--r-- root/root 183 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/QRDR_120.fasta.nsq -rw-r--r-- root/root 4457 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/RmST_profiles.txt -rw-r--r-- root/root 917 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/SmST_profiles.txt -rw-r--r-- root/root 28037 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/YbST_profiles.txt -rw-r--r-- root/root 1206537 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/clb_alleles.fasta -rw-r--r-- root/root 19478 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/clb_alleles.fasta.nhr -rw-r--r-- root/root 296281 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/clb_alleles.fasta.nsq -rw-r--r-- root/root 372155 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/iro_alleles.fasta -rw-r--r-- root/root 10628 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/iro_alleles.fasta.nhr -rw-r--r-- root/root 91253 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/iro_alleles.fasta.nsq -rw-r--r-- root/root 368435 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/iuc_alleles.fasta -rw-r--r-- root/root 15589 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/iuc_alleles.fasta.nhr -rw-r--r-- root/root 90245 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/iuc_alleles.fasta.nsq -rw-r--r-- root/root 132321 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/kpneumoniae.txt -rw-r--r-- root/root 39631 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/rmpA2.fasta -rw-r--r-- root/root 4625 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/rmpA2.fasta.nhr -rw-r--r-- root/root 9711 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/rmpA2.fasta.nsq -rw-r--r-- root/root 102285 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/rmp_alleles.fasta -rw-r--r-- root/root 18969 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/rmp_alleles.fasta.nhr -rw-r--r-- root/root 24403 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/rmp_alleles.fasta.nsq -rw-r--r-- root/root 37390336 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/species_mash_sketches.msh -rw-r--r-- root/root 257314 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/wzi.fasta -rw-r--r-- root/root 39169 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/wzi.fasta.nhr -rw-r--r-- root/root 62140 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/wzi.fasta.nsq -rw-r--r-- root/root 7252 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/wzi.txt -rw-r--r-- root/root 11322768 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/data/ybt_alleles.fasta -rw-r--r-- root/root 189988 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/ybt_alleles.fasta.nhr -rw-r--r-- root/root 2825755 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/data/ybt_alleles.fasta.nsq -rw-r--r-- root/root 7044 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/help_formatter.py -rw-r--r-- root/root 7005 2023-07-19 22:23 ./usr/lib/python3/dist-packages/kleborate/kaptive.py -rw-r--r-- root/root 3224 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/misc.py -rw-r--r-- root/root 11439 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/mlstBLAST.py -rw-r--r-- root/root 15686 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/resBLAST.py -rw-r--r-- root/root 1911 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/rmpA.py -rw-r--r-- root/root 9028 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/shv_mutations.py -rw-r--r-- root/root 2684 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/species.py -rw-r--r-- root/root 2102 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/truncation.py -rw-r--r-- root/root 895 2023-03-07 02:48 ./usr/lib/python3/dist-packages/kleborate/version.py drwxr-xr-x root/root 0 2023-07-19 22:23 ./usr/share/ drwxr-xr-x root/root 0 2023-07-19 22:23 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-07-19 22:23 ./usr/share/doc/kleborate/ -rw-r--r-- root/root 2522 2023-03-07 02:48 ./usr/share/doc/kleborate/README.md -rw-r--r-- root/root 331 2023-07-19 22:23 ./usr/share/doc/kleborate/README.test -rw-r--r-- root/root 1243 2023-07-19 22:23 ./usr/share/doc/kleborate/changelog.Debian.gz -rw-r--r-- root/root 1146 2023-07-19 22:23 ./usr/share/doc/kleborate/copyright drwxr-xr-x root/root 0 2023-07-19 22:23 ./usr/share/man/ drwxr-xr-x root/root 0 2023-07-19 22:23 ./usr/share/man/man1/ -rw-r--r-- root/root 808 2023-07-19 22:23 ./usr/share/man/man1/kleborate.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: 365372 Build-Time: 72 Distribution: mantic-proposed Host Architecture: s390x Install-Time: 46 Job: kleborate_2.3.2-1.dsc Machine Architecture: s390x Package: kleborate Package-Time: 121 Source-Version: 2.3.2-1 Space: 365372 Status: successful Version: 2.3.2-1 -------------------------------------------------------------------------------- Finished at 2023-07-20T05:15:35Z Build needed 00:02:01, 365372k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=mantic --arch=s390x PACKAGEBUILD-26436019 Scanning for processes to kill in build PACKAGEBUILD-26436019