https://launchpad.net/ubuntu/+source/kmc/2.3+dfsg-7build1/+build/18871137 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy01-amd64-011 4.4.0-176-generic #206-Ubuntu SMP Fri Feb 28 05:02:04 UTC 2020 x86_64 Buildd toolchain package versions: launchpad-buildd_186 python-lpbuildd_186 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 22 Mar 17:15:56 ntpdate[1932]: adjust time server 10.211.37.1 offset 0.057353 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18871137 --image-type chroot /home/buildd/filecache-default/e96c25c651525abc9f0cabeb95ea71010abf4ecb Creating target for build PACKAGEBUILD-18871137 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18871137 Starting target for build PACKAGEBUILD-18871137 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18871137 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18871137 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18871137 Updating target for build PACKAGEBUILD-18871137 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [255 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main amd64 Packages [976 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [502 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe amd64 Packages [8615 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5150 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 Packages [102 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [43.6 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 Packages [465 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [271 kB] Fetched 16.8 MB in 4s (4315 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: gcc-10-base libapt-pkg6.0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libffi7 libgcc-s1 libhogweed5 libisl22 libnettle7 libperl5.30 libprocps8 perl-modules-5.30 The following packages will be upgraded: advancecomp apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils bzip2 cpp-9 debianutils e2fsprogs fdisk findutils g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv grep gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcryptsetup12 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libext2fs2 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblsan0 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpcre3 libpng16-16 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lsb-base mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base procps readline-common sensible-utils systemd systemd-sysv sysvinit-utils tzdata ubuntu-keyring util-linux zlib1g 120 upgraded, 14 newly installed, 0 to remove and 0 not upgraded. Need to get 71.3 MB of archives. After this operation, 52.5 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main amd64 gcc-10-base amd64 10-20200321-1ubuntu1 [18.7 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main amd64 libgcc-s1 amd64 10-20200321-1ubuntu1 [41.5 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main amd64 libc6-dev amd64 2.31-0ubuntu6 [2515 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main amd64 libc-dev-bin amd64 2.31-0ubuntu6 [71.6 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main amd64 libcrypt-dev amd64 1:4.4.10-10ubuntu4 [104 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main amd64 linux-libc-dev amd64 5.4.0-18.22 [1156 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main amd64 libcrypt1 amd64 1:4.4.10-10ubuntu4 [78.2 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main amd64 libc6 amd64 2.31-0ubuntu6 [2715 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main amd64 libc-bin amd64 2.31-0ubuntu6 [633 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main amd64 base-files amd64 11ubuntu4 [60.2 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main amd64 debianutils amd64 4.9.1 [85.8 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main amd64 bash amd64 5.0-6ubuntu1 [638 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main amd64 bsdutils amd64 1:2.34-0.1ubuntu8 [63.1 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main amd64 findutils amd64 4.7.0-1ubuntu1 [329 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main amd64 grep amd64 3.4-1 [151 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main amd64 gzip amd64 1.10-0ubuntu4 [95.3 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main amd64 hostname amd64 3.23 [11.4 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main amd64 login amd64 1:4.8.1-1ubuntu3 [221 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main amd64 libncurses6 amd64 6.2-0ubuntu2 [101 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main amd64 libtinfo6 amd64 6.2-0ubuntu2 [87.0 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main amd64 ncurses-bin amd64 6.2-0ubuntu2 [173 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main amd64 libncursesw6 amd64 6.2-0ubuntu2 [132 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main amd64 perl-modules-5.30 all 5.30.0-9build1 [2737 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main amd64 libperl5.30 amd64 5.30.0-9build1 [3943 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main amd64 perl amd64 5.30.0-9build1 [224 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main amd64 perl-base amd64 5.30.0-9build1 [1511 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main amd64 bzip2 amd64 1.0.8-2 [34.1 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main amd64 libbz2-1.0 amd64 1.0.8-2 [32.3 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.6ubuntu2 [675 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main amd64 zlib1g amd64 1:1.2.11.dfsg-2ubuntu1 [53.7 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main amd64 libblkid1 amd64 2.34-0.1ubuntu8 [137 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main amd64 libuuid1 amd64 2.34-0.1ubuntu8 [20.1 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main amd64 libfdisk1 amd64 2.34-0.1ubuntu8 [175 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre2-8-0 amd64 10.34-7 [197 kB] Get:35 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libselinux1 amd64 3.0-1build2 [68.8 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main amd64 libmount1 amd64 2.34-0.1ubuntu8 [149 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main amd64 libsmartcols1 amd64 2.34-0.1ubuntu8 [100 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main amd64 fdisk amd64 2.34-0.1ubuntu8 [120 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main amd64 util-linux amd64 2.34-0.1ubuntu8 [1021 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main amd64 libdebconfclient0 amd64 0.251ubuntu1 [6160 B] Get:41 http://ftpmaster.internal/ubuntu focal/main amd64 base-passwd amd64 3.5.47 [47.7 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main amd64 ncurses-base all 6.2-0ubuntu2 [18.7 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main amd64 lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main amd64 sysvinit-utils amd64 2.96-2.1ubuntu1 [20.6 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main amd64 libgpg-error0 amd64 1.37-1 [58.0 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main amd64 libgcrypt20 amd64 1.8.5-5ubuntu1 [419 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main amd64 liblz4-1 amd64 1.9.2-2 [55.9 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main amd64 libstdc++6 amd64 10-20200321-1ubuntu1 [503 kB] Get:49 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 systemd-sysv amd64 245.2-1ubuntu1 [9524 B] Get:50 http://ftpmaster.internal/ubuntu focal/main amd64 libacl1 amd64 2.2.53-6 [18.8 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main amd64 libapparmor1 amd64 2.13.3-7ubuntu2 [34.1 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main amd64 libaudit-common all 1:2.8.5-2ubuntu6 [3936 B] Get:53 http://ftpmaster.internal/ubuntu focal/main amd64 libcap-ng0 amd64 0.7.9-2.1build1 [11.1 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main amd64 libaudit1 amd64 1:2.8.5-2ubuntu6 [38.9 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main amd64 libcap2 amd64 1:2.32-1 [15.9 kB] Get:56 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libudev1 amd64 245.2-1ubuntu1 [77.8 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main amd64 libdevmapper1.02.1 amd64 2:1.02.167-1ubuntu1 [127 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main amd64 libjson-c4 amd64 0.13.1+dfsg-7 [29.2 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main amd64 libssl1.1 amd64 1.1.1d-2ubuntu6 [1318 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main amd64 libcryptsetup12 amd64 2:2.2.2-3ubuntu2 [182 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main amd64 libnettle7 amd64 3.5.1+really3.5.1-2 [114 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main amd64 libgmp10 amd64 2:6.2.0+dfsg-4 [240 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main amd64 libhogweed5 amd64 3.5.1+really3.5.1-2 [138 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main amd64 libffi7 amd64 3.3-3 [19.6 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main amd64 libp11-kit0 amd64 0.23.20-1build1 [188 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main amd64 libtasn1-6 amd64 4.16.0-2 [38.1 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main amd64 libgnutls30 amd64 3.6.11.1-2ubuntu2 [793 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main amd64 libip4tc2 amd64 1.8.4-3ubuntu2 [18.8 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main amd64 libkmod2 amd64 27-1ubuntu2 [44.3 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main amd64 libpam0g amd64 1.3.1-5ubuntu4 [55.4 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main amd64 libseccomp2 amd64 2.4.3-0ubuntu2 [40.0 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main amd64 mount amd64 2.34-0.1ubuntu8 [115 kB] Get:73 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 systemd amd64 245.2-1ubuntu1 [3806 kB] Get:74 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libsystemd0 amd64 245.2-1ubuntu1 [270 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main amd64 libzstd1 amd64 1.4.4+dfsg-3 [237 kB] Get:76 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libapt-pkg6.0 amd64 2.0.0 [832 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main amd64 libapt-pkg5.90 amd64 1.9.10 [852 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main amd64 gpgv amd64 2.2.19-3ubuntu2 [200 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main amd64 ubuntu-keyring all 2020.02.11.1 [22.3 kB] Get:80 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 apt amd64 2.0.0 [1285 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-modules-bin amd64 1.3.1-5ubuntu4 [37.7 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-modules amd64 1.3.1-5ubuntu4 [250 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main amd64 logsave amd64 1.45.5-2ubuntu1 [10.2 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main amd64 libext2fs2 amd64 1.45.5-2ubuntu1 [183 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main amd64 e2fsprogs amd64 1.45.5-2ubuntu1 [527 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main amd64 libattr1 amd64 1:2.4.48-5 [12.7 kB] Get:87 http://ftpmaster.internal/ubuntu focal/universe amd64 libgcc1 amd64 1:10-20200321-1ubuntu1 [41.5 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:89 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libpcre3 amd64 2:8.39-12build1 [232 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main amd64 libsepol1 amd64 3.0-1 [252 kB] Get:91 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libsemanage-common all 3.0-1build2 [9792 B] Get:92 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libsemanage1 amd64 3.0-1build2 [85.5 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main amd64 passwd amd64 1:4.8.1-1ubuntu3 [797 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main amd64 libisl22 amd64 0.22.1-1 [592 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main amd64 libcc1-0 amd64 10-20200321-1ubuntu1 [41.1 kB] Get:96 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libctf-nobfd0 amd64 2.34-5ubuntu1 [46.9 kB] Get:97 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libctf0 amd64 2.34-5ubuntu1 [46.7 kB] Get:98 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libbinutils amd64 2.34-5ubuntu1 [476 kB] Get:99 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 binutils-common amd64 2.34-5ubuntu1 [207 kB] Get:100 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 binutils amd64 2.34-5ubuntu1 [3376 B] Get:101 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.34-5ubuntu1 [1613 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main amd64 libgomp1 amd64 10-20200321-1ubuntu1 [101 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main amd64 libitm1 amd64 10-20200321-1ubuntu1 [26.3 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main amd64 libatomic1 amd64 10-20200321-1ubuntu1 [9296 B] Get:105 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libasan5 amd64 9.3.0-6ubuntu1 [395 kB] Get:106 http://ftpmaster.internal/ubuntu focal/main amd64 liblsan0 amd64 10-20200321-1ubuntu1 [144 kB] Get:107 http://ftpmaster.internal/ubuntu focal/main amd64 libtsan0 amd64 10-20200321-1ubuntu1 [319 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main amd64 libubsan1 amd64 10-20200321-1ubuntu1 [136 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main amd64 libquadmath0 amd64 10-20200321-1ubuntu1 [146 kB] Get:110 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 g++-9 amd64 9.3.0-6ubuntu1 [8398 kB] Get:111 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libstdc++-9-dev amd64 9.3.0-6ubuntu1 [1711 kB] Get:112 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 gcc-9 amd64 9.3.0-6ubuntu1 [8233 kB] Get:113 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libgcc-9-dev amd64 9.3.0-6ubuntu1 [2354 kB] Get:114 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 cpp-9 amd64 9.3.0-6ubuntu1 [7489 kB] Get:115 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 gcc-9-base amd64 9.3.0-6ubuntu1 [19.2 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main amd64 libcom-err2 amd64 1.45.5-2ubuntu1 [9544 B] Get:117 http://ftpmaster.internal/ubuntu focal/main amd64 libprocps8 amd64 2:3.3.16-1ubuntu2 [33.1 kB] Get:118 http://ftpmaster.internal/ubuntu focal/main amd64 libss2 amd64 1.45.5-2ubuntu1 [11.3 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main amd64 mawk amd64 1.3.4.20200120-2 [96.0 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main amd64 procps amd64 2:3.3.16-1ubuntu2 [233 kB] Get:121 http://ftpmaster.internal/ubuntu focal/main amd64 sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:122 http://ftpmaster.internal/ubuntu focal/main amd64 readline-common all 8.0-4 [53.5 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main amd64 libreadline8 amd64 8.0-4 [131 kB] Get:124 http://ftpmaster.internal/ubuntu focal/main amd64 libsqlite3-0 amd64 3.31.1-3 [548 kB] Get:125 http://ftpmaster.internal/ubuntu focal/main amd64 openssl amd64 1.1.1d-2ubuntu6 [620 kB] Get:126 http://ftpmaster.internal/ubuntu focal/main amd64 tzdata all 2019c-3ubuntu1 [294 kB] Get:127 http://ftpmaster.internal/ubuntu focal/main amd64 libpng16-16 amd64 1.6.37-2 [179 kB] Get:128 http://ftpmaster.internal/ubuntu focal/main amd64 advancecomp amd64 2.1-2.1build1 [201 kB] Get:129 http://ftpmaster.internal/ubuntu focal/main amd64 libassuan0 amd64 2.5.3-7ubuntu2 [35.7 kB] Get:130 http://ftpmaster.internal/ubuntu focal/main amd64 gpg amd64 2.2.19-3ubuntu2 [482 kB] Get:131 http://ftpmaster.internal/ubuntu focal/main amd64 gpgconf amd64 2.2.19-3ubuntu2 [124 kB] Get:132 http://ftpmaster.internal/ubuntu focal/main amd64 gpg-agent amd64 2.2.19-3ubuntu2 [232 kB] Get:133 http://ftpmaster.internal/ubuntu focal/main amd64 liblockfile-bin amd64 1.16-1.1 [11.7 kB] Get:134 http://ftpmaster.internal/ubuntu focal/main amd64 liblockfile1 amd64 1.16-1.1 [6680 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 71.3 MB in 4s (20.2 MB/s) Selecting previously unselected package gcc-10-base:amd64. (Reading database ... 12741 files and directories currently installed.) Preparing to unpack .../gcc-10-base_10-20200321-1ubuntu1_amd64.deb ... Unpacking gcc-10-base:amd64 (10-20200321-1ubuntu1) ... Setting up gcc-10-base:amd64 (10-20200321-1ubuntu1) ... Selecting previously unselected package libgcc-s1:amd64. (Reading database ... 12747 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200321-1ubuntu1_amd64.deb ... Unpacking libgcc-s1:amd64 (10-20200321-1ubuntu1) ... Replacing files in old package libgcc1:amd64 (1:9.2.1-9ubuntu2) ... Setting up libgcc-s1:amd64 (10-20200321-1ubuntu1) ... (Reading database ... 12749 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.31-0ubuntu6_amd64.deb ... Unpacking libc6-dev:amd64 (2.31-0ubuntu6) over (2.30-0ubuntu2) ... Preparing to unpack .../1-libc-dev-bin_2.31-0ubuntu6_amd64.deb ... Unpacking libc-dev-bin (2.31-0ubuntu6) over (2.30-0ubuntu2) ... 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Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libasan5:amd64 (9.3.0-6ubuntu1) ... Setting up libncurses6:amd64 (6.2-0ubuntu2) ... Setting up libquadmath0:amd64 (10-20200321-1ubuntu1) ... Setting up libpng16-16:amd64 (1.6.37-2) ... Setting up libatomic1:amd64 (10-20200321-1ubuntu1) ... Setting up libss2:amd64 (1.45.5-2ubuntu1) ... Setting up logsave (1.45.5-2ubuntu1) ... Setting up libubsan1:amd64 (10-20200321-1ubuntu1) ... Setting up advancecomp (2.1-2.1build1) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.167-1ubuntu1) ... Setting up mount (2.34-0.1ubuntu8) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.10-10ubuntu4) ... Setting up libperl5.30:amd64 (5.30.0-9build1) ... Setting up libisl22:amd64 (0.22.1-1) ... Setting up mawk (1.3.4.20200120-2) ... Setting up liblockfile1:amd64 (1.16-1.1) ... Setting up libjson-c4:amd64 (0.13.1+dfsg-7) ... Setting up libbinutils:amd64 (2.34-5ubuntu1) ... Setting up libc-dev-bin (2.31-0ubuntu6) ... Setting up openssl (1.1.1d-2ubuntu6) ... Setting up readline-common (8.0-4) ... Setting up libcc1-0:amd64 (10-20200321-1ubuntu1) ... Setting up liblsan0:amd64 (10-20200321-1ubuntu1) ... Setting up libprocps8:amd64 (2:3.3.16-1ubuntu2) ... Setting up libitm1:amd64 (10-20200321-1ubuntu1) ... Setting up libkmod2:amd64 (27-1ubuntu2) ... Setting up libtsan0:amd64 (10-20200321-1ubuntu1) ... Setting up libctf0:amd64 (2.34-5ubuntu1) ... Setting up libreadline8:amd64 (8.0-4) ... Setting up e2fsprogs (1.45.5-2ubuntu1) ... Setting up libgcc-9-dev:amd64 (9.3.0-6ubuntu1) ... Setting up perl (5.30.0-9build1) ... Setting up procps (2:3.3.16-1ubuntu2) ... Removing obsolete conffile /etc/sysctl.d/protect-links.conf ... Removing obsolete conffile /etc/sysctl.d/10-link-restrictions.conf ... Setting up gpgconf (2.2.19-3ubuntu2) ... Setting up cpp-9 (9.3.0-6ubuntu1) ... Setting up libc6-dev:amd64 (2.31-0ubuntu6) ... Setting up libcryptsetup12:amd64 (2:2.2.2-3ubuntu2) ... Setting up gpg (2.2.19-3ubuntu2) ... Setting up binutils-x86-64-linux-gnu (2.34-5ubuntu1) ... Setting up gpg-agent (2.2.19-3ubuntu2) ... Installing new version of config file /etc/logcheck/ignore.d.server/gpg-agent ... Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket -> /usr/lib/systemd/user/gpg-agent-browser.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up libstdc++-9-dev:amd64 (9.3.0-6ubuntu1) ... Setting up systemd (245.2-1ubuntu1) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from KVM UUID. Setting up binutils (2.34-5ubuntu1) ... Setting up gcc-9 (9.3.0-6ubuntu1) ... Setting up systemd-sysv (245.2-1ubuntu1) ... Setting up g++-9 (9.3.0-6ubuntu1) ... Processing triggers for libc-bin (2.31-0ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18871137 amd64 focal-proposed -c chroot:build-PACKAGEBUILD-18871137 --arch=amd64 --dist=focal-proposed --nolog -A kmc_2.3+dfsg-7build1.dsc Initiating build PACKAGEBUILD-18871137 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-176-generic #206-Ubuntu SMP Fri Feb 28 05:02:04 UTC 2020 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lcy01-amd64-011.buildd +==============================================================================+ | kmc 2.3+dfsg-7build1 (amd64) 22 Mar 2020 17:16 | +==============================================================================+ Package: kmc Version: 2.3+dfsg-7build1 Source Version: 2.3+dfsg-7build1 Distribution: focal-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/kmc-SRyxwl/kmc-2.3+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/kmc-SRyxwl' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18871137/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- kmc_2.3+dfsg-7build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-V7GjLa/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-V7GjLa/apt_archive ./ InRelease Get:2 copy:/<>/resolver-V7GjLa/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-V7GjLa/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-V7GjLa/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-V7GjLa/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (160 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-V7GjLa/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14763 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), dh-exec, zlib1g-dev, libbz2-dev, help2man, asciidoctor, d-shlibs Filtered Build-Depends: debhelper (>= 11~), dh-exec, zlib1g-dev, libbz2-dev, help2man, asciidoctor, d-shlibs dpkg-deb: building package 'sbuild-build-depends-kmc-dummy' in '/<>/resolver-a23Rzp/apt_archive/sbuild-build-depends-kmc-dummy.deb'. Ign:1 copy:/<>/resolver-a23Rzp/apt_archive ./ InRelease Get:2 copy:/<>/resolver-a23Rzp/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-a23Rzp/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-a23Rzp/apt_archive ./ Sources [250 B] Get:5 copy:/<>/resolver-a23Rzp/apt_archive ./ Packages [568 B] Fetched 2937 B in 0s (164 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install kmc build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libbz2-dev libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu66 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libruby2.7 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 libyaml-0-2 m4 man-db po-debconf rake ruby ruby-asciidoctor ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl ri ruby-dev bundler Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl zip fonts-lato libjs-jquery The following NEW packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libbz2-dev libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu66 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libruby2.7 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 libyaml-0-2 m4 man-db po-debconf rake ruby ruby-asciidoctor ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration sbuild-build-depends-kmc-dummy zlib1g-dev 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. Need to get 21.8 MB of archives. After this operation, 88.6 MB of additional disk space will be used. 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http://ftpmaster.internal/ubuntu focal/main amd64 file amd64 1:5.38-4 [23.3 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main amd64 libelf1 amd64 0.176-1.1build1 [44.0 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main amd64 libglib2.0-0 amd64 2.64.1-1 [1284 kB] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libicu66 amd64 66.1-2ubuntu2 [8520 kB] Get:15 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libxml2 amd64 2.9.10+dfsg-4build1 [640 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main amd64 libyaml-0-2 amd64 0.2.2-1 [48.9 kB] Get:17 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 gettext-base amd64 0.19.8.1-10build1 [50.2 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main amd64 rubygems-integration all 1.16 [5092 B] Get:19 http://ftpmaster.internal/ubuntu focal/main amd64 rake all 13.0.1-2 [45.2 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main amd64 ruby-did-you-mean all 1.2.1-1 [9828 B] Get:21 http://ftpmaster.internal/ubuntu focal/main amd64 ruby-minitest all 5.13.0-1 [40.9 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main amd64 ruby-net-telnet all 0.1.1-2 [12.6 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main amd64 ruby-power-assert all 1.1.5-1 [11.3 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main amd64 ruby-test-unit all 3.3.4-1 [73.1 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main amd64 ruby-xmlrpc all 0.3.0-2 [23.8 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main amd64 libruby2.7 amd64 2.7.0-4 [3524 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main amd64 ruby2.7 amd64 2.7.0-4 [95.6 kB] Get:28 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 ruby amd64 1:2.7~0 [5504 B] Get:29 http://ftpmaster.internal/ubuntu focal/universe amd64 ruby-asciidoctor all 2.0.10-2 [166 kB] Get:30 http://ftpmaster.internal/ubuntu focal/universe amd64 asciidoctor all 2.0.10-2 [40.3 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main amd64 libsigsegv2 amd64 2.12-2 [13.9 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main amd64 m4 amd64 1.4.18-4 [199 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main amd64 autoconf all 2.69-11.1 [321 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main amd64 autotools-dev all 20180224.1 [39.6 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main amd64 automake all 1:1.16.1-4ubuntu6 [522 kB] Get:36 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 autopoint all 0.19.8.1-10build1 [412 kB] Get:37 http://ftpmaster.internal/ubuntu focal/universe amd64 d-shlibs all 0.89 [10.4 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main amd64 libtool all 2.4.6-13 [161 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main amd64 dh-autoreconf all 19 [16.1 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main amd64 libdebhelper-perl all 12.9ubuntu1 [62.0 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-2 [90.5 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:43 http://ftpmaster.internal/ubuntu focal/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main amd64 dh-strip-nondeterminism all 1.6.3-2 [5228 B] Get:45 http://ftpmaster.internal/ubuntu focal/main amd64 dwz amd64 0.13-5 [151 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] Get:47 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main amd64 po-debconf all 1.0.21 [233 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main amd64 debhelper all 12.9ubuntu1 [869 kB] Get:51 http://ftpmaster.internal/ubuntu focal/universe amd64 help2man amd64 1.47.12 [172 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main amd64 libbz2-dev amd64 1.0.8-2 [30.2 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu1 [156 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main amd64 dh-exec amd64 0.23.2 [25.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.8 MB in 0s (47.5 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 14763 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_11.1.2ubuntu2_amd64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../03-libuchardet0_0.0.6-3build1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../04-groff-base_1.22.4-4build1_amd64.deb ... Unpacking groff-base (1.22.4-4build1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../05-libpipeline1_1.5.2-2build1_amd64.deb ... 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Setting up ruby-xmlrpc (0.3.0-2) ... Setting up libxml2:amd64 (2.9.10+dfsg-4build1) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libbz2-dev:amd64 (1.0.8-2) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libtool (2.4.6-13) ... Setting up m4 (1.4.18-4) ... Setting up help2man (1.47.12) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4build1) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10build1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up ruby2.7 (2.7.0-4) ... Setting up debhelper (12.9ubuntu1) ... Setting up dh-exec (0.23.2) ... Setting up ruby (1:2.7~0) ... Setting up ruby-asciidoctor (2.0.10-2) ... Setting up rake (13.0.1-2) ... Setting up asciidoctor (2.0.10-2) ... Setting up libruby2.7:amd64 (2.7.0-4) ... Setting up sbuild-build-depends-kmc-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu6) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-176-generic amd64 (x86_64) Toolchain package versions: binutils_2.34-5ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-9_9.3.0-6ubuntu1 gcc-9_9.3.0-6ubuntu1 libc6-dev_2.31-0ubuntu6 libstdc++-9-dev_9.3.0-6ubuntu1 libstdc++6_10-20200321-1ubuntu1 linux-libc-dev_5.4.0-18.22 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1build1 apt_2.0.0 asciidoctor_2.0.10-2 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu4 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-5ubuntu1 binutils-common_2.34-5ubuntu1 binutils-x86-64-linux-gnu_2.34-5ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu8 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.3.0-6ubuntu1 d-shlibs_0.89 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-exec_0.23.2 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu8 file_1:5.38-4 findutils_4.7.0-1ubuntu1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.3.0-6ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-10-base_10-20200321-1ubuntu1 gcc-9_9.3.0-6ubuntu1 gcc-9-base_9.3.0-6ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.19-3ubuntu2 gpg-agent_2.2.19-3ubuntu2 gpgconf_2.2.19-3ubuntu2 gpgv_2.2.19-3ubuntu2 grep_3.4-1 groff-base_1.22.4-4build1 gzip_1.10-0ubuntu4 help2man_1.47.12 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapparmor1_2.13.3-7ubuntu2 libapt-pkg5.90_1.9.10 libapt-pkg6.0_2.0.0 libarchive-zip-perl_1.67-2 libargon2-1_0~20171227-0.2 libasan5_9.3.0-6ubuntu1 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200321-1ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-5ubuntu1 libblkid1_2.34-0.1ubuntu8 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.31-0ubuntu6 libc-dev-bin_2.31-0ubuntu6 libc6_2.31-0ubuntu6 libc6-dev_2.31-0ubuntu6 libcap-ng0_0.7.9-2.1build1 libcap2_1:2.32-1 libcc1-0_10-20200321-1ubuntu1 libcom-err2_1.45.5-2ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10ubuntu4 libcrypt1_1:4.4.10-10ubuntu4 libcryptsetup12_2:2.2.2-3ubuntu2 libctf-nobfd0_2.34-5ubuntu1 libctf0_2.34-5ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_12.9ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu1 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1build1 libext2fs2_1.45.5-2ubuntu1 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu8 libffi6_3.2.1-9 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-9-dev_9.3.0-6ubuntu1 libgcc-s1_10-20200321-1ubuntu1 libgcc1_1:10-20200321-1ubuntu1 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.11.1-2ubuntu2 libgomp1_10-20200321-1ubuntu1 libgpg-error0_1.37-1 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu66_66.1-2ubuntu2 libidn2-0_2.2.0-2 libip4tc2_1.8.4-3ubuntu2 libisl21_0.21-2 libisl22_0.22.1-1 libitm1_10-20200321-1ubuntu1 libjson-c4_0.13.1+dfsg-7 libkmod2_27-1ubuntu2 liblocale-gettext-perl_1.07-4 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10-20200321-1ubuntu1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu8 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.2-0ubuntu2 libncursesw6_6.2-0ubuntu2 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9build1 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libprocps7_2:3.3.15-2ubuntu3 libprocps8_2:3.3.16-1ubuntu2 libquadmath0_10-20200321-1ubuntu1 libreadline8_8.0-4 libruby2.7_2.7.0-4 libseccomp2_2.4.3-0ubuntu2 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu8 libsqlite3-0_3.31.1-3 libss2_1.45.5-2ubuntu1 libssl1.1_1.1.1d-2ubuntu6 libstdc++-9-dev_9.3.0-6ubuntu1 libstdc++6_10-20200321-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_245.2-1ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2-0ubuntu2 libtool_2.4.6-13 libtsan0_10-20200321-1ubuntu1 libubsan1_10-20200321-1ubuntu1 libuchardet0_0.0.6-3build1 libudev1_245.2-1ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu8 libxml2_2.9.10+dfsg-4build1 libyaml-0-2_0.2.2-1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-18.22 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu3 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1ubuntu8 ncurses-base_6.2-0ubuntu2 ncurses-bin_6.2-0ubuntu2 openssl_1.1.1d-2ubuntu6 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu3 patch_2.7.6-6 perl_5.30.0-9build1 perl-base_5.30.0-9build1 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9build1 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-1ubuntu2 rake_13.0.1-2 readline-common_8.0-4 ruby_1:2.7~0 ruby-asciidoctor_2.0.10-2 ruby-did-you-mean_1.2.1-1 ruby-minitest_5.13.0-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.5-1 ruby-test-unit_3.3.4-1 ruby-xmlrpc_0.3.0-2 ruby2.7_2.7.0-4 rubygems-integration_1.16 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kmc-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_245.2-1ubuntu1 systemd-sysv_245.2-1ubuntu1 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.1 util-linux_2.34-0.1ubuntu8 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Mar 22 16:25:34 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kmc_2.3+dfsg-7build1.dsc dpkg-source: info: extracting kmc in kmc-2.3+dfsg dpkg-source: info: unpacking kmc_2.3+dfsg.orig.tar.gz dpkg-source: info: unpacking kmc_2.3+dfsg-7build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying disable-asmlib dpkg-source: info: applying use-shared-libs dpkg-source: info: applying hardening dpkg-source: info: applying 0005-Add-static-library-target-to-makefile.patch dpkg-source: info: applying 0007-Use-standard-compiler-environment-variables.patch dpkg-source: info: applying spelling dpkg-source: info: applying newish_gcc_build_fix.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18871137 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18871137 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18871137 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package kmc dpkg-buildpackage: info: source version 2.3+dfsg-7build1 dpkg-buildpackage: info: source distribution focal dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/kmc-2.3+dfsg' rm -rf /<>/kmc-2.3+dfsg/debian/man_src/*.html /<>/kmc-2.3+dfsg/debian/man_src/*.? rm -rf /<>/kmc-2.3+dfsg/debian/man dh_auto_clean -- make -j4 clean make[2]: Entering directory '/<>/kmc-2.3+dfsg' makefile:56: target 'kmc_api/mmer.o' given more than once in the same rule rm kmer_counter/*.o rm: cannot remove 'kmer_counter/*.o': No such file or directory make[2]: [makefile:80: clean] Error 1 (ignored) rm kmc_api/*.o rm: cannot remove 'kmc_api/*.o': No such file or directory make[2]: [makefile:81: clean] Error 1 (ignored) rm kmc_dump/*.o rm: cannot remove 'kmc_dump/*.o': No such file or directory make[2]: [makefile:82: clean] Error 1 (ignored) rm kmc_tools/*.o rm: cannot remove 'kmc_tools/*.o': No such file or directory make[2]: [makefile:83: clean] Error 1 (ignored) rm -rf bin rm -f libkmc.a make[2]: Leaving directory '/<>/kmc-2.3+dfsg' make[1]: Leaving directory '/<>/kmc-2.3+dfsg' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars debian/files rm -fr -- debian/kmc/ debian/tmp/ debian/libkmc-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/kmc-2.3+dfsg' makefile:56: target 'kmc_api/mmer.o' given more than once in the same rule g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/kmer_counter.cpp -o kmer_counter/kmer_counter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/mmer.cpp -o kmer_counter/mmer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/mem_disk_file.cpp -o kmer_counter/mem_disk_file.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/rev_byte.cpp -o kmer_counter/rev_byte.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/bkb_writer.cpp -o kmer_counter/bkb_writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/bkb_reader.cpp -o kmer_counter/bkb_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/fastq_reader.cpp -o kmer_counter/fastq_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/timer.cpp -o kmer_counter/timer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/radix.cpp -o kmer_counter/radix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/kb_completer.cpp -o kmer_counter/kb_completer.o kmer_counter/kmer_counter.cpp: In function ‘int main(int, char**)’: kmer_counter/kmer_counter.cpp:473:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 473 | else | ^~~~ kmer_counter/kmer_counter.cpp:475:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 475 | cout << " Total no. of super-k-mers : " << setw(12) << n_total_super_kmers << "\n"; | ^~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/kb_storer.cpp -o kmer_counter/kb_storer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/kmer.cpp -o kmer_counter/kmer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/prob_qual.cpp -o kmer_counter/prob_qual.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_dump/nc_utils.cpp -o kmc_dump/nc_utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_api/mmer.cpp -o kmc_api/mmer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_dump/kmc_dump.cpp -o kmc_dump/kmc_dump.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_api/kmc_file.cpp -o kmc_api/kmc_file.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_api/kmer_api.cpp -o kmc_api/kmer_api.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/kmc_header.cpp -o kmc_tools/kmc_header.o kmc_api/kmc_file.cpp: In member function ‘bool CKMCFile::BinarySearch(int64, int64, const CKmerAPI&, uint64&, uint32)’: kmc_api/kmc_file.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long int’} and ‘uint64’ {aka ‘long long unsigned int’} [-Wsign-compare] 1360 | if (index_start >= total_kmers) | ~~~~~~~~~~~~^~~~~~~~~~~~~~ kmc_api/kmc_file.cpp: In member function ‘void CKMCFile::Reload_sufix_file_buf()’: kmc_api/kmc_file.cpp:607:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 607 | fread (sufix_file_buf, 1, (size_t) part_size, file_suf); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_api/kmc_file.cpp: In member function ‘bool CKMCFile::RestartListing()’: kmc_api/kmc_file.cpp:653:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 653 | fread (sufix_file_buf, 1, (size_t) part_size, file_suf); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/kmc_tools.cpp -o kmc_tools/kmc_tools.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/parser.cpp -o kmc_tools/parser.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/fastq_writer.cpp -o kmc_tools/fastq_writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fdebug-prefix-map=/<>/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/percent_progress.cpp -o kmc_tools/percent_progress.o ar rcs libkmc.a kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o ranlib libkmc.a mkdir -p bin g++ -o bin/kmc_dump kmc_dump/nc_utils.o kmc_api/mmer.o kmc_dump/kmc_dump.o kmc_api/kmc_file.o kmc_api/kmer_api.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lz -lbz2 -fopenmp -lpthread mkdir -p bin g++ -o bin/kmc_tools kmc_tools/kmc_header.o kmc_tools/kmc_tools.o kmc_tools/nc_utils.o kmc_tools/parameters_parser.o kmc_tools/parser.o kmc_tools/tokenizer.o kmc_tools/fastq_filter.o kmc_tools/fastq_reader.o kmc_tools/fastq_writer.o kmc_tools/percent_progress.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lz -lbz2 -fopenmp -lpthread In file included from kmer_counter/kmc.h:16, from kmer_counter/kmer_counter.cpp:18: kmer_counter/kmer.h: In static member function ‘static void CKmerBinSorter_Impl, SIZE>::Expand(CKmerBinSorter, SIZE>&, uint64) [with unsigned int SIZE = 1]’: kmer_counter/kmer.h:931:15: warning: ‘current_kmer’ may be used uninitialized in this function [-Wmaybe-uninitialized] 931 | data = (data << 2) + x; | ~~~~~~^~~~~ In file included from kmer_counter/kmc.h:29, from kmer_counter/kmer_counter.cpp:18: kmer_counter/kb_sorter.h:684:19: note: ‘current_kmer’ was declared here 684 | CKmerQuake current_kmer; | ^~~~~~~~~~~~ mkdir -p bin g++ -o bin/kmc kmer_counter/kmer_counter.o kmer_counter/mmer.o kmer_counter/mem_disk_file.o kmer_counter/rev_byte.o kmer_counter/bkb_writer.o kmer_counter/bkb_reader.o kmer_counter/fastq_reader.o kmer_counter/timer.o kmer_counter/radix.o kmer_counter/kb_completer.o kmer_counter/kb_storer.o kmer_counter/kmer.o kmer_counter/prob_qual.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -lm -lz -lbz2 -fopenmp -lpthread make[1]: Leaving directory '/<>/kmc-2.3+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars rm -fr -- debian/.debhelper/generated/kmc/ debian/kmc/ debian/tmp/ debian/.debhelper/generated/libkmc-dev/ debian/libkmc-dev/ dh_auto_install install -d /<>/kmc-2.3\+dfsg/debian/tmp debian/rules override_dh_install make[1]: Entering directory '/<>/kmc-2.3+dfsg' dh_install install -d debian/kmc/usr/bin cp --reflink=auto -a ./bin/kmc ./bin/kmc_dump ./bin/kmc_tools debian/kmc/usr/bin/ install -d debian/.debhelper/generated/kmc install -d debian/libkmc-dev/usr/include/kmc cp --reflink=auto -a ./kmc_api/kmc_file.h ./kmc_api/kmer_api.h ./kmc_api/kmer_defs.h ./kmc_api/mmer.h ./kmc_api/stdafx.h debian/libkmc-dev/usr/include/kmc/ install -d debian/libkmc-dev/usr/lib/x86_64-linux-gnu cp --reflink=auto -a ./libkmc.a debian/libkmc-dev/usr/lib/x86_64-linux-gnu/ install -d debian/.debhelper/generated/libkmc-dev make[1]: Leaving directory '/<>/kmc-2.3+dfsg' dh_installdocs install -d debian/kmc/usr/share/doc/kmc install -p -m0644 debian/copyright debian/kmc/usr/share/doc/kmc/copyright install -d debian/libkmc-dev/usr/share/doc/libkmc-dev install -p -m0644 debian/copyright debian/libkmc-dev/usr/share/doc/libkmc-dev/copyright dh_installchangelogs install -p -m0644 debian/changelog debian/libkmc-dev/usr/share/doc/libkmc-dev/changelog.Debian install -p -m0644 debian/changelog debian/kmc/usr/share/doc/kmc/changelog.Debian rm -f debian/kmc.debhelper.log debian/libkmc-dev.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/<>/kmc-2.3+dfsg' mkdir -p /<>/kmc-2.3+dfsg/debian/man /<>/kmc-2.3+dfsg/debian/usage_to_man Can't exec "1": No such file or directory at /<>/kmc-2.3+dfsg/debian/usage_to_man line 19. Creating manpages Manpage creation complete Manpage creation complete asciidoctor -a docdate='' -b manpage /<>/kmc-2.3+dfsg/debian/man_src/*.adoc cp /<>/kmc-2.3+dfsg/debian/man_src/*.? /<>/kmc-2.3+dfsg/debian/man dh_installman -- install -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./man/kmc.1 debian/kmc/usr/share/man/man1/kmc.1 install -p -m0644 ./man/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_dump.1 install -p -m0644 ./debian/man/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 install -p -m0644 ./debian/man/kmc_tools-complex.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 install -p -m0644 ./debian/man/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 install -p -m0644 ./debian/man/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 install -p -m0644 ./debian/man/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 install -p -m0644 ./debian/man/kmc_tools-histogram.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 install -p -m0644 ./debian/man/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 install -p -m0644 ./debian/man/kmc_tools-kmers_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 install -p -m0644 ./debian/man/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1 install -p -m0644 ./debian/man/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 install -p -m0644 ./debian/man/kmc_tools.1 debian/kmc/usr/share/man/man1/kmc_tools.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 mv debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 mv debian/kmc/usr/share/man/man1/kmc_tools-dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1 mv debian/kmc/usr/share/man/man1/kmc_tools-filter.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 mv debian/kmc/usr/share/man/man1/kmc_tools-histogram.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 mv debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools.1 mv debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 mv debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 mv debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 mv debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 mv debian/kmc/usr/share/man/man1/kmc.1.dh-new debian/kmc/usr/share/man/man1/kmc.1 mv debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 mv debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 mv debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-complex.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 make[1]: Leaving directory '/<>/kmc-2.3+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress cd debian/kmc cd debian/libkmc-dev chmod a-x usr/share/doc/libkmc-dev/changelog.Debian chmod a-x usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 gzip -9nf usr/share/doc/libkmc-dev/changelog.Debian gzip -9nf usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 cd '/<>/kmc-2.3+dfsg' cd '/<>/kmc-2.3+dfsg' dh_fixperms find debian/kmc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libkmc-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libkmc-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/kmc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libkmc-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libkmc-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/share/doc -type f -a -true -a ! -regex 'debian/kmc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/kmc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libkmc-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/kmc/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_strip strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/x86_64-linux-gnu/libkmc.a install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/eb objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/eb/2df831da7c27b540218578a25ff91712d66eb7.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/eb/2df831da7c27b540218578a25ff91712d66eb7.debug chown 0:0 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/eb/2df831da7c27b540218578a25ff91712d66eb7.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/eb/2df831da7c27b540218578a25ff91712d66eb7.debug debian/kmc/usr/bin/kmc install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1e objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_tools debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1e/d2a24bab72d72af96c7075a78989010b957b7a.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1e/d2a24bab72d72af96c7075a78989010b957b7a.debug chown 0:0 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1e/d2a24bab72d72af96c7075a78989010b957b7a.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_tools objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1e/d2a24bab72d72af96c7075a78989010b957b7a.debug debian/kmc/usr/bin/kmc_tools install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/01 objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_dump debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/01/272543ba664597fa5bcc84acb10c1ffec2e052.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/01/272543ba664597fa5bcc84acb10c1ffec2e052.debug chown 0:0 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/01/272543ba664597fa5bcc84acb10c1ffec2e052.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_dump objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/01/272543ba664597fa5bcc84acb10c1ffec2e052.debug debian/kmc/usr/bin/kmc_dump install -d debian/.debhelper/kmc/dbgsym-root/usr/share/doc ln -s kmc debian/.debhelper/kmc/dbgsym-root/usr/share/doc/kmc-dbgsym dh_makeshlibs rm -f debian/kmc/DEBIAN/shlibs rm -f debian/libkmc-dev/DEBIAN/shlibs dh_shlibdeps install -d debian/kmc/DEBIAN dpkg-shlibdeps -Tdebian/kmc.substvars debian/kmc/usr/bin/kmc debian/kmc/usr/bin/kmc_tools debian/kmc/usr/bin/kmc_dump dh_installdeb install -d debian/libkmc-dev/DEBIAN dh_gencontrol echo misc:Depends= >> debian/libkmc-dev.substvars echo misc:Pre-Depends= >> debian/libkmc-dev.substvars dpkg-gencontrol -plibkmc-dev -ldebian/changelog -Tdebian/libkmc-dev.substvars -Pdebian/libkmc-dev -UMulti-Arch echo misc:Depends= >> debian/kmc.substvars echo misc:Pre-Depends= >> debian/kmc.substvars install -d debian/.debhelper/kmc/dbgsym-root/DEBIAN dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -Pdebian/.debhelper/kmc/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -DPackage=kmc-dbgsym "-DDepends=kmc (= \${binary:Version})" "-DDescription=debug symbols for kmc" "-DBuild-Ids=01272543ba664597fa5bcc84acb10c1ffec2e052 1ed2a24bab72d72af96c7075a78989010b957b7a eb2df831da7c27b540218578a25ff91712d66eb7" -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: Depends field of package libkmc-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/libkmc-dev/DEBIAN/control chown 0:0 -- debian/libkmc-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/control dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -Pdebian/kmc -UMulti-Arch chmod 0644 -- debian/kmc/DEBIAN/control chown 0:0 -- debian/kmc/DEBIAN/control dh_md5sums cd debian/kmc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libkmc-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libkmc-dev/DEBIAN/md5sums chown 0:0 -- debian/libkmc-dev/DEBIAN/md5sums chmod 0644 -- debian/kmc/DEBIAN/md5sums chown 0:0 -- debian/kmc/DEBIAN/md5sums cd debian/.debhelper/kmc/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --build debian/kmc .. dpkg-deb --build debian/libkmc-dev .. install -d debian/.debhelper/scratch-space/build-kmc dpkg-deb --build debian/.debhelper/kmc/dbgsym-root debian/.debhelper/scratch-space/build-kmc INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing kmc-dbgsym (in debian/.debhelper/kmc/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing kmc (in debian/kmc); do_strip: , oemstrip: pkgstriptranslations: processing libkmc-dev (in debian/libkmc-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/kmc/DEBIAN/control, package kmc, directory debian/kmc pkgstripfiles: processing control file: debian/libkmc-dev/DEBIAN/control, package libkmc-dev, directory debian/libkmc-dev INFO: pkgstripfiles: waiting for lock (libkmc-dev) ... pkgstripfiles: Truncating usr/share/doc/kmc/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package kmc ... pkgstripfiles: No PNG files. dpkg-deb: building package 'kmc' in '../kmc_2.3+dfsg-7build1_amd64.deb'. pkgstripfiles: Truncating usr/share/doc/libkmc-dev/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libkmc-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libkmc-dev' in '../libkmc-dev_2.3+dfsg-7build1_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/kmc/dbgsym-root/DEBIAN/control, package kmc-dbgsym, directory debian/.debhelper/kmc/dbgsym-root dpkg-deb: building package 'kmc-dbgsym' in 'debian/.debhelper/scratch-space/build-kmc/kmc-dbgsym_2.3+dfsg-7build1_amd64.deb'. Renaming kmc-dbgsym_2.3+dfsg-7build1_amd64.deb to kmc-dbgsym_2.3+dfsg-7build1_amd64.ddeb mv debian/.debhelper/scratch-space/build-kmc/kmc-dbgsym_2.3\+dfsg-7build1_amd64.deb ../kmc-dbgsym_2.3\+dfsg-7build1_amd64.ddeb dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../kmc_2.3+dfsg-7build1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200322-1720 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kmc_2.3+dfsg-7build1_amd64.changes: ----------------------------------- Format: 1.8 Date: Sun, 22 Mar 2020 16:44:59 +0100 Source: kmc Binary: kmc libkmc-dev Architecture: amd64 Version: 2.3+dfsg-7build1 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: kmc - count kmers in genomic sequences libkmc-dev - library to access KMC k-mer count files Changes: kmc (2.3+dfsg-7build1) focal; urgency=medium . * No-change rebuild for libgcc-s1 package name change. Checksums-Sha1: f262d759b675d1cb7de35b082cbe1aedcb46b8b4 11113528 kmc-dbgsym_2.3+dfsg-7build1_amd64.ddeb 6d4e3dfa8289964dce11dabbdf199edaf859a708 6673 kmc_2.3+dfsg-7build1_amd64.buildinfo 5db5597923fd394c086ee8360d68cdb35ea6b7a0 513156 kmc_2.3+dfsg-7build1_amd64.deb ff2edb8d25d23a9dfadc0fbe293c966d4b6142c7 27756 libkmc-dev_2.3+dfsg-7build1_amd64.deb Checksums-Sha256: 470e4e2113a29fd330904ac1df9138f259260829ce85387d3618caec9a610125 11113528 kmc-dbgsym_2.3+dfsg-7build1_amd64.ddeb 6481de80b77553cd49d9ee559e5f6dc478f074125d41c6a372a0c499ee5cd9fc 6673 kmc_2.3+dfsg-7build1_amd64.buildinfo bdd16c0d7e3041df2417242fe20fadf32431ad37b13184c68f0e173555770e99 513156 kmc_2.3+dfsg-7build1_amd64.deb ae1ce9793e0fe339d96e6846b2032610b7fe95c86d860d3922cbfe0fee5267b2 27756 libkmc-dev_2.3+dfsg-7build1_amd64.deb Files: 305ae1e5f53b403228d59d663a446833 11113528 debug optional kmc-dbgsym_2.3+dfsg-7build1_amd64.ddeb 57e4d5cd66457290ddb5e660e3531445 6673 science optional kmc_2.3+dfsg-7build1_amd64.buildinfo 7ee337b46dbb3333386a6797cb7c3919 513156 science optional kmc_2.3+dfsg-7build1_amd64.deb 9ed5a3fc359977a544275132ef85aa94 27756 libdevel optional libkmc-dev_2.3+dfsg-7build1_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kmc_2.3+dfsg-7build1_amd64.deb ------------------------------ new debian package, version 2.0. size 513156 bytes: control archive=1744 bytes. 1694 bytes, 32 lines control 1252 bytes, 18 lines md5sums Package: kmc Version: 2.3+dfsg-7build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2348 Depends: libbz2-1.0, libc6 (>= 2.14), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 6), zlib1g (>= 1:1.2.6) Section: science Priority: optional Homepage: http://sun.aei.polsl.pl/kmc Description: count kmers in genomic sequences The kmc software is designed for counting k-mers (sequences of consecutive k symbols) in a set of reads. K-mer counting is important for many bioinformatics applications, e.g. developing de Bruijn graph assemblers. . Building de Bruijn graphs is a commonly used approach for genome assembly with data from second-generation sequencing. Unfortunately, sequencing errors (frequent in practice) result in huge memory requirements for de Bruijn graphs, as well as long build time. One of the popular approaches to handle this problem is filtering the input reads in such a way that unique k-mers (very likely obtained as a result of an error) are discarded. . Thus, KMC scans the raw reads and produces a compact representation of all non-unique reads accompanied with number of their occurrences. The algorithm implemented in KMC makes use mostly of disk space rather than RAM, which allows one to use KMC even on rather typical personal computers. When run on high-end servers (what is necessary for KMC competitors) it outperforms them in both memory requirements and speed of computation. The disk space necessary for computation is in order of the size of input data (usually it is smaller). drwxr-xr-x root/root 0 2020-03-22 15:44 ./ drwxr-xr-x root/root 0 2020-03-22 15:44 ./usr/ drwxr-xr-x root/root 0 2020-03-22 15:44 ./usr/bin/ -rwxr-xr-x root/root 1466296 2020-03-22 15:44 ./usr/bin/kmc -rwxr-xr-x root/root 55864 2020-03-22 15:44 ./usr/bin/kmc_dump -rwxr-xr-x root/root 851624 2020-03-22 15:44 ./usr/bin/kmc_tools drwxr-xr-x root/root 0 2020-03-22 15:44 ./usr/share/ drwxr-xr-x root/root 0 2020-03-22 15:44 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-03-22 15:44 ./usr/share/doc/kmc/ -rw-r--r-- root/root 1132 2020-03-22 15:44 ./usr/share/doc/kmc/changelog.Debian.gz -rw-r--r-- root/root 1211 2018-11-26 20:21 ./usr/share/doc/kmc/copyright drwxr-xr-x root/root 0 2020-03-22 15:44 ./usr/share/man/ drwxr-xr-x root/root 0 2020-03-22 15:44 ./usr/share/man/man1/ -rw-r--r-- root/root 1136 2020-03-22 15:44 ./usr/share/man/man1/kmc.1.gz -rw-r--r-- root/root 614 2020-03-22 15:44 ./usr/share/man/man1/kmc_dump.1.gz -rw-r--r-- root/root 830 2020-03-22 15:44 ./usr/share/man/man1/kmc_tools-compact.1.gz -rw-r--r-- root/root 1312 2020-03-22 15:44 ./usr/share/man/man1/kmc_tools-complex.1.gz -rw-r--r-- root/root 1009 2020-03-22 15:44 ./usr/share/man/man1/kmc_tools-counters_subtract.1.gz -rw-r--r-- root/root 856 2020-03-22 15:44 ./usr/share/man/man1/kmc_tools-dump.1.gz -rw-r--r-- root/root 1024 2020-03-22 15:44 ./usr/share/man/man1/kmc_tools-filter.1.gz -rw-r--r-- root/root 820 2020-03-22 15:44 ./usr/share/man/man1/kmc_tools-histogram.1.gz -rw-r--r-- root/root 966 2020-03-22 15:44 ./usr/share/man/man1/kmc_tools-intersect.1.gz -rw-r--r-- root/root 970 2020-03-22 15:44 ./usr/share/man/man1/kmc_tools-kmers_subtract.1.gz -rw-r--r-- root/root 878 2020-03-22 15:44 ./usr/share/man/man1/kmc_tools-sort.1.gz -rw-r--r-- root/root 951 2020-03-22 15:44 ./usr/share/man/man1/kmc_tools-union.1.gz -rw-r--r-- root/root 1205 2020-03-22 15:44 ./usr/share/man/man1/kmc_tools.1.gz libkmc-dev_2.3+dfsg-7build1_amd64.deb ------------------------------------- new debian package, version 2.0. size 27756 bytes: control archive=988 bytes. 700 bytes, 18 lines control 516 bytes, 8 lines md5sums Package: libkmc-dev Source: kmc Version: 2.3+dfsg-7build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 107 Section: libdevel Priority: optional Homepage: http://sun.aei.polsl.pl/kmc Description: library to access KMC k-mer count files The kmc software is designed for counting k-mers (sequences of consecutive k symbols) in a set of reads. K-mer counting is important for many bioinformatics applications, e.g. developing de Bruijn graph assemblers. . This package contains the C++ library headers for accessing kmc's output file format. drwxr-xr-x root/root 0 2020-03-22 15:44 ./ drwxr-xr-x root/root 0 2020-03-22 15:44 ./usr/ drwxr-xr-x root/root 0 2020-03-22 15:44 ./usr/include/ drwxr-xr-x root/root 0 2020-03-22 15:44 ./usr/include/kmc/ -rw-r--r-- root/root 5781 2015-09-10 15:25 ./usr/include/kmc/kmc_file.h -rw-r--r-- root/root 18341 2015-09-10 15:25 ./usr/include/kmc/kmer_api.h -rw-r--r-- root/root 1022 2015-09-10 15:25 ./usr/include/kmc/kmer_defs.h -rw-r--r-- root/root 4163 2015-09-10 15:25 ./usr/include/kmc/mmer.h -rw-r--r-- root/root 85 2015-09-10 15:25 ./usr/include/kmc/stdafx.h drwxr-xr-x root/root 0 2020-03-22 15:44 ./usr/lib/ drwxr-xr-x root/root 0 2020-03-22 15:44 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 62682 2020-03-22 15:44 ./usr/lib/x86_64-linux-gnu/libkmc.a drwxr-xr-x root/root 0 2020-03-22 15:44 ./usr/share/ drwxr-xr-x root/root 0 2020-03-22 15:44 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-03-22 15:44 ./usr/share/doc/libkmc-dev/ -rw-r--r-- root/root 1131 2020-03-22 15:44 ./usr/share/doc/libkmc-dev/changelog.Debian.gz -rw-r--r-- root/root 1211 2018-11-26 20:21 ./usr/share/doc/libkmc-dev/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 187836 Build-Time: 189 Distribution: focal-proposed Host Architecture: amd64 Install-Time: 13 Job: kmc_2.3+dfsg-7build1.dsc Machine Architecture: amd64 Package: kmc Package-Time: 203 Source-Version: 2.3+dfsg-7build1 Space: 187836 Status: successful Version: 2.3+dfsg-7build1 -------------------------------------------------------------------------------- Finished at 20200322-1720 Build needed 00:03:23, 187836k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18871137 Scanning for processes to kill in build PACKAGEBUILD-18871137