https://launchpad.net/ubuntu/+source/kmer/0~20150903+r2013-4/+build/15232606 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-s390x-016 4.4.0-131-generic #157-Ubuntu SMP Thu Jul 12 15:44:42 UTC 2018 s390x Buildd toolchain package versions: launchpad-buildd_163 python-lpbuildd_163 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 5 Aug 17:10:05 ntpdate[1806]: adjust time server 10.211.37.1 offset 0.001124 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-15232606 /home/buildd/filecache-default/17124f3eec304530bbb077109f97da7d4ad52147 Creating target for build PACKAGEBUILD-15232606 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-15232606 Starting target for build PACKAGEBUILD-15232606 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-15232606 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15232606 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-15232606 Updating target for build PACKAGEBUILD-15232606 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main s390x Packages [957 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe s390x Packages [8337 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5041 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x Packages [93.7 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [49.2 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x Packages [471 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [245 kB] Fetched 16.2 MB in 6s (2916 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libprocps6 libstdc++-7-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-8 g++-8 gcc-8 libargon2-1 libasan5 libgcc-8-dev libncurses6 libncursesw6 libprocps7 libstdc++-8-dev libtinfo6 libubsan1 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-s390x-linux-gnu bsdutils build-essential cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapparmor1 libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libcomerr2 libcryptsetup12 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libidn11 libidn2-0 libisl19 libitm1 libkmod2 liblz4-1 libmount1 libncurses5 libncursesw5 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libreadline7 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libunistring2 libusb-0.1-4 libuuid1 linux-libc-dev make mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv tar tzdata util-linux 106 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. Need to get 69.9 MB of archives. After this operation, 87.9 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main s390x base-files s390x 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main s390x libtinfo6 s390x 6.1+20180210-4ubuntu1 [80.5 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main s390x debianutils s390x 4.8.6 [85.2 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main s390x bash s390x 4.4.18-2ubuntu2 [583 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main s390x bsdutils s390x 1:2.32-0.1ubuntu1 [58.2 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main s390x tar s390x 1.30+dfsg-2 [230 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main s390x dpkg s390x 1.19.0.5ubuntu3 [1121 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main s390x libext2fs2 s390x 1.44.3-1 [154 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main s390x e2fsprogs s390x 1.44.3-1 [374 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main s390x ncurses-bin s390x 6.1+20180210-4ubuntu1 [160 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main s390x perl-modules-5.26 all 5.26.2-6 [2762 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main s390x libperl5.26 s390x 5.26.2-6 [3378 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main s390x perl s390x 5.26.2-6 [202 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main s390x perl-base s390x 5.26.2-6 [1310 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main s390x sed s390x 4.5-1 [183 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main s390x libuuid1 s390x 2.32-0.1ubuntu1 [20.0 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main s390x libblkid1 s390x 2.32-0.1ubuntu1 [120 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main s390x libfdisk1 s390x 2.32-0.1ubuntu1 [155 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main s390x libncursesw6 s390x 6.1+20180210-4ubuntu1 [120 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main s390x libpcre3 s390x 2:8.39-11 [154 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libselinux1 s390x 2.8-1build1 [64.2 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main s390x libmount1 s390x 2.32-0.1ubuntu1 [129 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main s390x libsmartcols1 s390x 2.32-0.1ubuntu1 [81.9 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main s390x fdisk s390x 2.32-0.1ubuntu1 [103 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main s390x util-linux s390x 2.32-0.1ubuntu1 [881 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main s390x base-passwd s390x 3.5.45 [46.4 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main s390x ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libgomp1 s390x 8.2.0-3ubuntu1 [69.9 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libitm1 s390x 8.2.0-3ubuntu1 [26.9 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x gcc-8-base s390x 8.2.0-3ubuntu1 [18.4 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libgcc1 s390x 1:8.2.0-3ubuntu1 [25.1 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libcc1-0 s390x 8.2.0-3ubuntu1 [37.2 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libatomic1 s390x 8.2.0-3ubuntu1 [8436 B] Get:34 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libstdc++6 s390x 8.2.0-3ubuntu1 [397 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main s390x liblz4-1 s390x 1.8.2-1ubuntu1 [58.4 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libudev1 s390x 239-7ubuntu2 [52.5 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main s390x libapt-pkg5.0 s390x 1.7.0~alpha2 [747 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x debconf all 1.5.69 [121 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main s390x adduser all 3.117ubuntu1 [163 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main s390x libgpg-error0 s390x 1.32-1 [53.1 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main s390x libgcrypt20 s390x 1.8.3-1ubuntu1 [351 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main s390x gpgv s390x 2.2.8-1ubuntu1 [181 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main s390x libseccomp2 s390x 2.3.3-3ubuntu1 [41.3 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main s390x apt s390x 1.7.0~alpha2 [1134 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main s390x libapparmor1 s390x 2.12-4ubuntu7 [29.4 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main s390x libaudit-common all 1:2.8.3-1ubuntu2 [4064 B] Get:47 http://ftpmaster.internal/ubuntu cosmic/main s390x libcap-ng0 s390x 0.7.9-1 [11.0 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main s390x libaudit1 s390x 1:2.8.3-1ubuntu2 [37.1 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main s390x libargon2-1 s390x 0~20171227-0.1 [35.9 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main s390x libcryptsetup12 s390x 2:2.0.3-6ubuntu1 [124 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main s390x libkmod2 s390x 25-1ubuntu1 [38.3 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main s390x mount s390x 2.32-0.1ubuntu1 [100 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main s390x libncurses6 s390x 6.1+20180210-4ubuntu1 [94.4 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main s390x libprocps7 s390x 2:3.3.15-2ubuntu1 [31.0 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main s390x procps s390x 2:3.3.15-2ubuntu1 [221 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x systemd s390x 239-7ubuntu2 [2667 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libsystemd0 s390x 239-7ubuntu2 [194 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x systemd-sysv s390x 239-7ubuntu2 [14.1 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main s390x libcom-err2 s390x 1.44.3-1 [9052 B] Get:60 http://ftpmaster.internal/ubuntu cosmic/main s390x libsepol1 s390x 2.8-1 [227 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main s390x libsemanage-common all 2.8-1build1 [7000 B] Get:62 http://ftpmaster.internal/ubuntu cosmic/main s390x libsemanage1 s390x 2.8-1build1 [79.0 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main s390x libss2 s390x 1.44.3-1 [10.7 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main s390x libgmp10 s390x 2:6.1.2+dfsg-3 [225 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main s390x libunistring2 s390x 0.9.10-1ubuntu1 [357 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main s390x libidn2-0 s390x 2.0.4-2.2 [46.9 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main s390x libp11-kit0 s390x 0.23.12-2 [188 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main s390x libtasn1-6 s390x 4.13-3 [34.1 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/universe s390x libncurses5 s390x 6.1+20180210-4ubuntu1 [89.1 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main s390x libncursesw5 s390x 6.1+20180210-4ubuntu1 [108 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main s390x libtinfo5 s390x 6.1+20180210-4ubuntu1 [76.4 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main s390x libidn11 s390x 1.33-2.2ubuntu1 [44.7 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main s390x readline-common all 7.0-5 [52.2 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main s390x libreadline7 s390x 7.0-5 [117 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main s390x libslang2 s390x 2.3.2-1ubuntu1 [417 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main s390x libsqlite3-0 s390x 3.24.0-1 [472 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main s390x libssl1.1 s390x 1.1.0g-2ubuntu5 [810 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main s390x openssl s390x 1.1.0g-2ubuntu5 [519 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main s390x tzdata all 2018e-1 [188 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libpng16-16 s390x 1.6.34-2 [171 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main s390x libbinutils s390x 2.31.1-2ubuntu1 [304 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic/main s390x binutils-common s390x 2.31.1-2ubuntu1 [194 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main s390x binutils s390x 2.31.1-2ubuntu1 [3324 B] Get:84 http://ftpmaster.internal/ubuntu cosmic/main s390x binutils-s390x-linux-gnu s390x 2.31.1-2ubuntu1 [1676 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main s390x libisl19 s390x 0.20-1 [523 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x cpp-8 s390x 8.2.0-3ubuntu1 [5505 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main s390x cpp s390x 4:8.1.0-2ubuntu1 [27.6 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libasan5 s390x 8.2.0-3ubuntu1 [326 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libubsan1 s390x 8.2.0-3ubuntu1 [116 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libgcc-8-dev s390x 8.2.0-3ubuntu1 [650 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x gcc-8 s390x 8.2.0-3ubuntu1 [6258 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic/main s390x gcc s390x 4:8.1.0-2ubuntu1 [5200 B] Get:93 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libstdc++-8-dev s390x 8.2.0-3ubuntu1 [1499 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x g++-8 s390x 8.2.0-3ubuntu1 [6356 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic/main s390x g++ s390x 4:8.1.0-2ubuntu1 [1600 B] Get:96 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x make s390x 4.2.1-1.2 [155 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main s390x dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic/main s390x libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main s390x build-essential s390x 12.5ubuntu2 [4740 B] Get:100 http://ftpmaster.internal/ubuntu cosmic/main s390x libasan4 s390x 7.3.0-27ubuntu1 [318 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic/main s390x libubsan0 s390x 7.3.0-27ubuntu1 [120 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic/universe s390x g++-7 s390x 7.3.0-27ubuntu1 [5993 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic/main s390x gcc-7 s390x 7.3.0-27ubuntu1 [5890 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/main s390x libstdc++-7-dev s390x 7.3.0-27ubuntu1 [1454 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic/main s390x libgcc-7-dev s390x 7.3.0-27ubuntu1 [642 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic/main s390x cpp-7 s390x 7.3.0-27ubuntu1 [5188 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/main s390x gcc-7-base s390x 7.3.0-27ubuntu1 [18.9 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic/main s390x e2fslibs s390x 1.44.3-1 [2704 B] Get:109 http://ftpmaster.internal/ubuntu cosmic/main s390x pinentry-curses s390x 1.1.0-1build2 [34.4 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic/main s390x libnpth0 s390x 1.6-1 [7500 B] Get:111 http://ftpmaster.internal/ubuntu cosmic/main s390x gpg s390x 2.2.8-1ubuntu1 [428 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic/main s390x gpgconf s390x 2.2.8-1ubuntu1 [115 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic/main s390x gpg-agent s390x 2.2.8-1ubuntu1 [208 kB] Get:114 http://ftpmaster.internal/ubuntu cosmic/universe s390x libargon2-0 s390x 0~20171227-0.1 [4536 B] Get:115 http://ftpmaster.internal/ubuntu cosmic/main s390x libcomerr2 s390x 1.44.3-1 [2704 B] Get:116 http://ftpmaster.internal/ubuntu cosmic/main s390x libusb-0.1-4 s390x 2:0.1.12-32 [16.5 kB] Get:117 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x linux-libc-dev s390x 4.17.0-7.8 [1016 kB] Get:118 http://ftpmaster.internal/ubuntu cosmic/main s390x pkgbinarymangler all 141 [53.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 69.9 MB in 36s (1931 kB/s) (Reading database ... 12382 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_s390x.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:s390x. (Reading database ... 12382 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-4ubuntu1_s390x.deb ... Unpacking libtinfo6:s390x (6.1+20180210-4ubuntu1) ... Setting up libtinfo6:s390x (6.1+20180210-4ubuntu1) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6_s390x.deb ... Unpacking debianutils (4.8.6) over (4.8.4) ... Setting up debianutils (4.8.6) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_s390x.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.32-0.1ubuntu1_s390x.deb ... Unpacking bsdutils (1:2.32-0.1ubuntu1) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.32-0.1ubuntu1) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-2_s390x.deb ... Unpacking tar (1.30+dfsg-2) over (1.29b-2) ... Setting up tar (1.30+dfsg-2) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_s390x.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.3-1_s390x.deb ... Unpacking libext2fs2:s390x (1.44.3-1) over (1.44.1-1) ... Setting up libext2fs2:s390x (1.44.3-1) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.3-1_s390x.deb ... Unpacking e2fsprogs (1.44.3-1) over (1.44.1-1) ... Setting up e2fsprogs (1.44.3-1) ... (Reading database ... 12393 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20180210-4ubuntu1_s390x.deb ... Unpacking ncurses-bin (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Setting up ncurses-bin (6.1+20180210-4ubuntu1) ... (Reading database ... 12393 files and directories currently installed.) Preparing to unpack .../perl_5.26.2-6_s390x.deb ... Unpacking perl (5.26.2-6) over (5.26.1-6) ... Preparing to unpack .../perl-modules-5.26_5.26.2-6_all.deb ... Unpacking perl-modules-5.26 (5.26.2-6) over (5.26.1-6) ... Preparing to unpack .../libperl5.26_5.26.2-6_s390x.deb ... 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Setting up libncursesw5:s390x (6.1+20180210-4ubuntu1) ... Setting up libreadline7:s390x (7.0-5) ... Setting up tzdata (2018e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Aug 5 17:11:03 UTC 2018. Universal Time is now: Sun Aug 5 17:11:03 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (239-7ubuntu2) ... Setting up gpgconf (2.2.8-1ubuntu1) ... Setting up linux-libc-dev:s390x (4.17.0-7.8) ... Setting up perl-modules-5.26 (5.26.2-6) ... Setting up libargon2-0 (0~20171227-0.1) ... Setting up gcc-7-base:s390x (7.3.0-27ubuntu1) ... Setting up binutils-common:s390x (2.31.1-2ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libperl5.26:s390x (5.26.2-6) ... Setting up libssl1.1:s390x (1.1.0g-2ubuntu5) ... Setting up openssl (1.1.0g-2ubuntu5) ... Setting up libsqlite3-0:s390x (3.24.0-1) ... Setting up pinentry-curses (1.1.0-1build2) ... Setting up libcomerr2:s390x (1.44.3-1) ... Setting up libslang2:s390x (2.3.2-1ubuntu1) ... Setting up libasan5:s390x (8.2.0-3ubuntu1) ... Setting up libusb-0.1-4:s390x (2:0.1.12-32) ... Setting up libitm1:s390x (8.2.0-3ubuntu1) ... Setting up libidn11:s390x (1.33-2.2ubuntu1) ... Setting up gpg (2.2.8-1ubuntu1) ... Setting up libubsan1:s390x (8.2.0-3ubuntu1) ... Setting up libisl19:s390x (0.20-1) ... Setting up cpp-8 (8.2.0-3ubuntu1) ... Setting up cpp (4:8.1.0-2ubuntu1) ... Setting up libasan4:s390x (7.3.0-27ubuntu1) ... Setting up libbinutils:s390x (2.31.1-2ubuntu1) ... Setting up libubsan0:s390x (7.3.0-27ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.31.1-2ubuntu1) ... Setting up gpg-agent (2.2.8-1ubuntu1) ... Setting up libgcc-7-dev:s390x (7.3.0-27ubuntu1) ... Setting up cpp-7 (7.3.0-27ubuntu1) ... Setting up libstdc++-7-dev:s390x (7.3.0-27ubuntu1) ... Setting up perl (5.26.2-6) ... Setting up libgcc-8-dev:s390x (8.2.0-3ubuntu1) ... Setting up binutils (2.31.1-2ubuntu1) ... Setting up libstdc++-8-dev:s390x (8.2.0-3ubuntu1) ... Setting up gcc-7 (7.3.0-27ubuntu1) ... Setting up g++-7 (7.3.0-27ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up gcc-8 (8.2.0-3ubuntu1) ... Setting up g++-8 (8.2.0-3ubuntu1) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up gcc (4:8.1.0-2ubuntu1) ... Setting up g++ (4:8.1.0-2ubuntu1) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15232606 s390x cosmic-proposed -c chroot:build-PACKAGEBUILD-15232606 --arch=s390x --dist=cosmic-proposed --nolog 'kmer_0~20150903+r2013-4.dsc' Initiating build PACKAGEBUILD-15232606 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-131-generic #157-Ubuntu SMP Thu Jul 12 15:44:42 UTC 2018 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-016.buildd +==============================================================================+ | kmer 0~20150903+r2013-4 (s390x) 05 Aug 2018 17:11 | +==============================================================================+ Package: kmer Version: 0~20150903+r2013-4 Source Version: 0~20150903+r2013-4 Distribution: cosmic-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/kmer-Net0IO/kmer-0~20150903+r2013' with '<>' I: NOTICE: Log filtering will replace 'build/kmer-Net0IO' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15232606/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- kmer_0~20150903+r2013-4.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-lmO4_x/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-lmO4_x/apt_archive ./ InRelease Get:2 copy:/<>/resolver-lmO4_x/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-lmO4_x/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-lmO4_x/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-lmO4_x/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libprocps6 libstdc++-7-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-lmO4_x/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13387 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), dh-exec, dh-python, python-all-dev Filtered Build-Depends: debhelper (>= 11~), dh-exec, dh-python, python-all-dev dpkg-deb: building package 'sbuild-build-depends-kmer-dummy' in '/<>/resolver-31JDD9/apt_archive/sbuild-build-depends-kmer-dummy.deb'. Ign:1 copy:/<>/resolver-31JDD9/apt_archive ./ InRelease Get:2 copy:/<>/resolver-31JDD9/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-31JDD9/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-31JDD9/apt_archive ./ Sources [231 B] Get:5 copy:/<>/resolver-31JDD9/apt_archive ./ Packages [547 B] Fetched 2897 B in 213503982334601d 7h 0min 15s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install kmer build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libprocps6 libstdc++-7-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev python-dev python-minimal python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.6-venv python3.6-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev python-dev python-minimal python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal sbuild-build-depends-kmer-dummy 0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded. Need to get 57.2 MB of archives. After this operation, 167 MB of additional disk space will be used. Get:1 copy:/<>/resolver-31JDD9/apt_archive ./ sbuild-build-depends-kmer-dummy 0.invalid.0 [876 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main s390x libpython3.6-minimal s390x 3.6.6-1 [527 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main s390x libexpat1 s390x 2.2.5-3 [79.3 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main s390x python3.6-minimal s390x 3.6.6-1 [1475 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main s390x python3-minimal s390x 3.6.6-1 [23.6 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main s390x mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main s390x libmpdec2 s390x 2.4.2-2 [80.6 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main s390x libpython3.6-stdlib s390x 3.6.6-1 [1664 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main s390x python3.6 s390x 3.6.6-1 [190 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main s390x libpython3-stdlib s390x 3.6.6-1 [7144 B] Get:11 http://ftpmaster.internal/ubuntu cosmic/main s390x python3 s390x 3.6.6-1 [33.5 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main s390x libbsd0 s390x 0.9.1-1 [43.1 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main s390x bsdmainutils s390x 11.1.2ubuntu2 [181 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main s390x groff-base s390x 1.22.3-10 [1174 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main s390x libpipeline1 s390x 1.5.0-1 [24.1 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main s390x man-db s390x 2.8.4-2 [1017 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libpython2.7-minimal s390x 2.7.15-3 [334 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x python2.7-minimal s390x 2.7.15-3 [1171 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main s390x python2-minimal s390x 2.7.15-3 [28.1 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main s390x python-minimal s390x 2.7.15-3 [5996 B] Get:21 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libpython2.7-stdlib s390x 2.7.15-3 [1853 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x python2.7 s390x 2.7.15-3 [239 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main s390x libpython2-stdlib s390x 2.7.15-3 [7728 B] Get:24 http://ftpmaster.internal/ubuntu cosmic/main s390x libpython-stdlib s390x 2.7.15-3 [5828 B] Get:25 http://ftpmaster.internal/ubuntu cosmic/main s390x python2 s390x 2.7.15-3 [26.5 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main s390x python s390x 2.7.15-3 [7832 B] Get:27 http://ftpmaster.internal/ubuntu cosmic/main s390x libmagic-mgc s390x 1:5.33-3 [193 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main s390x libmagic1 s390x 1:5.33-3 [68.2 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main s390x file s390x 1:5.33-3 [22.7 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main s390x libelf1 s390x 0.170-0.5 [42.6 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main s390x libglib2.0-0 s390x 2.57.2-1 [1080 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main s390x libicu60 s390x 60.2-6ubuntu1 [7837 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libxml2 s390x 2.9.4+dfsg1-7build1 [588 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main s390x gettext-base s390x 0.19.8.1-6build1 [48.2 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main s390x libsigsegv2 s390x 2.12-2 [13.8 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main s390x m4 s390x 1.4.18-1 [195 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main s390x autoconf all 2.69-11 [322 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main s390x automake all 1:1.15.1-3ubuntu2 [509 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main s390x autopoint all 0.19.8.1-6build1 [412 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main s390x libtool all 2.4.6-2.1build1 [196 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main s390x dh-autoreconf all 19 [16.1 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main s390x libarchive-zip-perl all 1.60-1ubuntu1 [84.6 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main s390x libfile-stripnondeterminism-perl all 0.042-1 [15.2 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main s390x libtimedate-perl all 2.3000-2 [37.5 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main s390x dh-strip-nondeterminism all 0.042-1 [5188 B] Get:47 http://ftpmaster.internal/ubuntu cosmic/main s390x dwz s390x 0.12-2 [73.2 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main s390x libcroco3 s390x 0.6.12-2 [74.2 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main s390x gettext s390x 0.19.8.1-6build1 [858 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main s390x intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main s390x po-debconf all 1.0.20 [232 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main s390x debhelper all 11.3.2ubuntu1 [883 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main s390x python3-lib2to3 all 3.6.6-1 [76.9 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main s390x python3-distutils all 3.6.6-1 [141 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main s390x dh-python all 3.20180723 [90.2 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main s390x libexpat1-dev s390x 2.2.5-3 [224 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libpython2.7 s390x 2.7.15-3 [964 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libpython2.7-dev s390x 2.7.15-3 [31.3 MB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main s390x libpython2-dev s390x 2.7.15-3 [7784 B] Get:60 http://ftpmaster.internal/ubuntu cosmic/main s390x libpython-dev s390x 2.7.15-3 [5884 B] Get:61 http://ftpmaster.internal/ubuntu cosmic/main s390x libpython-all-dev s390x 2.7.15-3 [1092 B] Get:62 http://ftpmaster.internal/ubuntu cosmic/main s390x python-all s390x 2.7.15-3 [1072 B] Get:63 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x python2.7-dev s390x 2.7.15-3 [286 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main s390x python2-dev s390x 2.7.15-3 [1240 B] Get:65 http://ftpmaster.internal/ubuntu cosmic/main s390x python-dev s390x 2.7.15-3 [1220 B] Get:66 http://ftpmaster.internal/ubuntu cosmic/main s390x python-all-dev s390x 2.7.15-3 [1096 B] Get:67 http://ftpmaster.internal/ubuntu cosmic/main s390x dh-exec s390x 0.23build1 [24.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 57.2 MB in 0s (260 MB/s) Selecting previously unselected package libpython3.6-minimal:s390x. (Reading database ... 13387 files and directories currently installed.) Preparing to unpack .../libpython3.6-minimal_3.6.6-1_s390x.deb ... Unpacking libpython3.6-minimal:s390x (3.6.6-1) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../libexpat1_2.2.5-3_s390x.deb ... Unpacking libexpat1:s390x (2.2.5-3) ... Selecting previously unselected package python3.6-minimal. Preparing to unpack .../python3.6-minimal_3.6.6-1_s390x.deb ... Unpacking python3.6-minimal (3.6.6-1) ... Setting up libpython3.6-minimal:s390x (3.6.6-1) ... Setting up libexpat1:s390x (2.2.5-3) ... Setting up python3.6-minimal (3.6.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13634 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.6.6-1_s390x.deb ... Unpacking python3-minimal (3.6.6-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.60ubuntu1_all.deb ... 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Setting up libelf1:s390x (0.170-0.5) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:s390x (2.57.2-1) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-6build1) ... Setting up libpipeline1:s390x (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:s390x (0.9.1-1) ... Setting up libxml2:s390x (2.9.4+dfsg1-7build1) ... Setting up libmagic-mgc (1:5.33-3) ... Setting up libmagic1:s390x (1:5.33-3) ... Setting up libcroco3:s390x (0.6.12-2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libexpat1-dev:s390x (2.2.5-3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpython2.7-stdlib:s390x (2.7.15-3) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up libmpdec2:s390x (2.4.2-2) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up libpython3.6-stdlib:s390x (3.6.6-1) ... Setting up python3.6 (3.6.6-1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up python2.7 (2.7.15-3) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libpython2.7:s390x (2.7.15-3) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2-stdlib:s390x (2.7.15-3) ... Setting up libpython2.7-dev:s390x (2.7.15-3) ... Setting up python2.7-dev (2.7.15-3) ... Setting up libtool (2.4.6-2.1build1) ... Setting up libpython3-stdlib:s390x (3.6.6-1) ... Setting up po-debconf (1.0.20) ... Setting up python3 (3.6.6-1) ... Setting up python2 (2.7.15-3) ... Setting up libpython2-dev:s390x (2.7.15-3) ... Setting up libpython-stdlib:s390x (2.7.15-3) ... Setting up python2-dev (2.7.15-3) ... Setting up python3-lib2to3 (3.6.6-1) ... Setting up python3-distutils (3.6.6-1) ... Setting up python (2.7.15-3) ... Setting up libpython-dev:s390x (2.7.15-3) ... Setting up python-dev (2.7.15-3) ... Setting up libpython-all-dev:s390x (2.7.15-3) ... Setting up dh-python (3.20180723) ... Setting up python-all (2.7.15-3) ... Setting up python-all-dev (2.7.15-3) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (0.042-1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up dh-exec (0.23build1) ... Setting up sbuild-build-depends-kmer-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-131-generic s390x (s390x) Toolchain package versions: binutils_2.31.1-2ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-27ubuntu1 g++-8_8.2.0-3ubuntu1 gcc-7_7.3.0-27ubuntu1 gcc-8_8.2.0-3ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-27ubuntu1 libstdc++-8-dev_8.2.0-3ubuntu1 libstdc++6_8.2.0-3ubuntu1 linux-libc-dev_4.17.0-7.8 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha2 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.31.1-2ubuntu1 binutils-common_2.31.1-2ubuntu1 binutils-s390x-linux-gnu_2.31.1-2ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:8.1.0-2ubuntu1 cpp-7_7.3.0-27ubuntu1 cpp-8_8.2.0-3ubuntu1 dash_0.5.8-2.10 debconf_1.5.69 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-exec_0.23build1 dh-python_3.20180723 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 dwz_0.12-2 e2fslibs_1.44.3-1 e2fsprogs_1.44.3-1 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu1 file_1:5.33-3 findutils_4.6.0+git+20170828-2 g++_4:8.1.0-2ubuntu1 g++-7_7.3.0-27ubuntu1 g++-8_8.2.0-3ubuntu1 gcc_4:8.1.0-2ubuntu1 gcc-7_7.3.0-27ubuntu1 gcc-7-base_7.3.0-27ubuntu1 gcc-8_8.2.0-3ubuntu1 gcc-8-base_8.2.0-3ubuntu1 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.8-1ubuntu1 gpg-agent_2.2.8-1ubuntu1 gpgconf_2.2.8-1ubuntu1 gpgv_2.2.8-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu7 libapt-pkg5.0_1.7.0~alpha2 libarchive-zip-perl_1.60-1ubuntu1 libargon2-0_0~20171227-0.1 libargon2-1_0~20171227-0.1 libasan4_7.3.0-27ubuntu1 libasan5_8.2.0-3ubuntu1 libassuan0_2.5.1-2 libatomic1_8.2.0-3ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu2 libaudit1_1:2.8.3-1ubuntu2 libbinutils_2.31.1-2ubuntu1 libblkid1_2.32-0.1ubuntu1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-3ubuntu1 libcom-err2_1.44.3-1 libcomerr2_1.44.3-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.3-6ubuntu1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libelf1_0.170-0.5 libexpat1_2.2.5-3 libexpat1-dev_2.2.5-3 libext2fs2_1.44.3-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libgcc-7-dev_7.3.0-27ubuntu1 libgcc-8-dev_8.2.0-3ubuntu1 libgcc1_1:8.2.0-3ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.57.2-1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.2.0-3ubuntu1 libgpg-error0_1.32-1 libhogweed4_3.4-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.4-2.2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.20-1 libitm1_8.2.0-3ubuntu1 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1ubuntu1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw5_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.6-1 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libpng16-16_1.6.34-2 libprocps6_2:3.3.12-3ubuntu1 libprocps7_2:3.3.15-2ubuntu1 libpython-all-dev_2.7.15-3 libpython-dev_2.7.15-3 libpython-stdlib_2.7.15-3 libpython2-dev_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7_2.7.15-3 libpython2.7-dev_2.7.15-3 libpython2.7-minimal_2.7.15-3 libpython2.7-stdlib_2.7.15-3 libpython3-stdlib_3.6.6-1 libpython3.6-minimal_3.6.6-1 libpython3.6-stdlib_3.6.6-1 libreadline7_7.0-5 libseccomp2_2.3.3-3ubuntu1 libselinux1_2.8-1build1 libsemanage-common_2.8-1build1 libsemanage1_2.8-1build1 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.3-1 libssl1.1_1.1.0g-2ubuntu5 libstdc++-7-dev_7.3.0-27ubuntu1 libstdc++-8-dev_8.2.0-3ubuntu1 libstdc++6_8.2.0-3ubuntu1 libsystemd0_239-7ubuntu2 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-2.1build1 libubsan0_7.3.0-27ubuntu1 libubsan1_8.2.0-3ubuntu1 libudev1_239-7ubuntu2 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1ubuntu1 libxml2_2.9.4+dfsg1-7build1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.17.0-7.8 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.2.1-1.2 man-db_2.8.4-2 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.32-0.1ubuntu1 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.0g-2ubuntu5 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1build2 pkgbinarymangler_141 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 python_2.7.15-3 python-all_2.7.15-3 python-all-dev_2.7.15-3 python-dev_2.7.15-3 python-minimal_2.7.15-3 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-3 python2.7-dev_2.7.15-3 python2.7-minimal_2.7.15-3 python3_3.6.6-1 python3-distutils_3.6.6-1 python3-lib2to3_3.6.6-1 python3-minimal_3.6.6-1 python3.6_3.6.6-1 python3.6-minimal_3.6.6-1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kmer-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 systemd_239-7ubuntu2 systemd-sysv_239-7ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.32-0.1ubuntu1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Aug 5 11:44:35 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kmer_0~20150903+r2013-4.dsc dpkg-source: info: extracting kmer in kmer-0~20150903+r2013 dpkg-source: info: unpacking kmer_0~20150903+r2013.orig.tar.gz dpkg-source: info: unpacking kmer_0~20150903+r2013-4.debian.tar.xz dpkg-source: info: applying allow-freebsd-build.patch dpkg-source: info: applying atac-helper-script-paths.patch dpkg-source: info: applying atac-readme.patch dpkg-source: info: applying spelling.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15232606 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15232606 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15232606 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package kmer dpkg-buildpackage: info: source version 0~20150903+r2013-4 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build kmer-0~20150903+r2013 dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean --with python2 debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/kmer-0~20150903+r2013' /usr/bin/make real-clean make[2]: Entering directory '/<>/kmer-0~20150903+r2013' rm -f ESTmapper/*.o ESTmapper/mergeCounts ESTmapper/terminate ESTmapper/Make.depends ESTmapper/mergeCounts.C.d ESTmapper/terminate.C.d ESTmapper/mergeCounts ESTmapper/terminate rm -f atac-driver/libatac/*.o atac-driver/libatac/*~ atac-driver/libatac/libatac.a atac-driver/libatac/Make.depends atac-driver/libatac/atacFeature.C.d atac-driver/libatac/atacFeatureList.C.d atac-driver/libatac/atacFile.C.d atac-driver/libatac/atacFileStreamMerge.C.d atac-driver/libatac/atacMatch.C.d atac-driver/libatac/atacMatchList.C.d atac-driver/libatac/atacMatchOrder.C.d rm -f atac-driver/alignOverlap/*.o atac-driver/alignOverlap/*~ atac-driver/alignOverlap/core atac-driver/alignOverlap/overlap-process1.C atac-driver/alignOverlap/overlap-process2.C atac-driver/alignOverlap/overlap atac-driver/alignOverlap/Make.depends atac-driver/alignOverlap/overlap.C.d atac-driver/alignOverlap/overlap-sort.C.d atac-driver/alignOverlap/overlap-printAnno.C.d atac-driver/alignOverlap/overlap-find.C.d rm -f atac-driver/gapShifter/*.o atac-driver/gapShifter/*~ atac-driver/gapShifter/core atac-driver/gapShifter/gapShifter atac-driver/gapShifter/extractSequence atac-driver/gapShifter/extractUnmapped atac-driver/gapShifter/coalesceMatches atac-driver/gapShifter/correctGaps atac-driver/gapShifter/testAtac atac-driver/gapShifter/cleanAtac atac-driver/gapShifter/projectFeatures atac-driver/gapShifter/Make.depends atac-driver/gapShifter/gapShifter.C.d atac-driver/gapShifter/extractSequence.C.d atac-driver/gapShifter/extractUnmapped.C.d atac-driver/gapShifter/coalesceMatches.C.d atac-driver/gapShifter/correctGaps.C.d atac-driver/gapShifter/testAtac.C.d atac-driver/gapShifter/cleanAtac.C.d atac-driver/gapShifter/projectFeatures.C.d rm -f atac-driver/lengthFilter/*.o atac-driver/lengthFilter/*~ atac-driver/lengthFilter/core atac-driver/lengthFilter/lengthFilter atac-driver/lengthFilter/Make.depends atac-driver/lengthFilter/lengthFilter.C.d rm -f atac-driver/matchExtender/*.o atac-driver/matchExtender/*~ atac-driver/matchExtender/core atac-driver/matchExtender/matchExtender atac-driver/matchExtender/Make.depends atac-driver/matchExtender/matchExtender.C.d atac-driver/matchExtender/matchExtender-dump.C.d atac-driver/matchExtender/matchExtender-func.C.d rm -f atac-driver/mismatchCounter/*.o atac-driver/mismatchCounter/*~ atac-driver/mismatchCounter/core atac-driver/mismatchCounter/mismatchCounter atac-driver/mismatchCounter/Make.depends atac-driver/mismatchCounter/mismatchCounter.C.d rm -f atac-driver/statsGenerator/*.o atac-driver/statsGenerator/*~ atac-driver/statsGenerator/core atac-driver/statsGenerator/statsGenerator atac-driver/statsGenerator/Make.depends atac-driver/statsGenerator/statsGenerator.C.d rm -f atac-driver/uniqueFilter/*.o atac-driver/uniqueFilter/*~ atac-driver/uniqueFilter/core atac-driver/uniqueFilter/uniqueFilter atac-driver/uniqueFilter/Make.depends atac-driver/uniqueFilter/uniqueFilter.C.d rm -f atac-driver/clumpMaker/*.o atac-driver/clumpMaker/*~ atac-driver/clumpMaker/core atac-driver/clumpMaker/clumpMaker atac-driver/clumpMaker/Make.depends atac-driver/clumpMaker/clumpMaker.C.d rm -f atac-driver/chainer/*.o atac-driver/chainer/*/*.o atac-driver/chainer/*.so atac-driver/chainer/python/*.pyc atac-driver/chainer/localAlignerInterfacemodule.so atac-driver/chainer/halignmodule.so atac-driver/chainer/Make.depends atac-driver/chainer/localalign/GF_ALN_dpaligner.C.d atac-driver/chainer/localalign/GF_ALN_local.C.d atac-driver/chainer/localalign/GF_ALN_overlap.C.d atac-driver/chainer/localalign/GF_ALN_loverlapper.C.d atac-driver/chainer/localalign/GF_ALN_pieceOlap.C.d atac-driver/chainer/localalign/localAlignerInterfacemodule.C.d atac-driver/chainer/halign/halign.C.d atac-driver/chainer/halign/halignmodule.C.d rm -f atac-driver/chimera/*.o atac-driver/chimera/*~ atac-driver/chimera/core atac-driver/chimera/happy-clones-span-clumps atac-driver/chimera/Make.depends atac-driver/chimera/happy-clones-span-clumps.C.d rm -f atac-driver/Make.depends rm -f seatac/*.o seatac/seatac seatac/heavychains seatac/filter-nop.so seatac/filter-heavychains.so seatac/Make.depends seatac/seatac.C.d seatac/configuration.C.d seatac/encodedQuery.C.d seatac/hitMatrix.C.d seatac/thr-search.C.d seatac/thr-loader.C.d seatac/thr-deadlock.C.d seatac/hitMatrix-sort.C.d rm -f leaff/*.o leaff/leaff leaff/Make.depends leaff/leaff.C.d leaff/blocks.C.d leaff/dups.C.d leaff/gc.C.d leaff/partition.C.d leaff/simseq.C.d leaff/stats.C.d rm -f meryl/*.o meryl/meryl meryl/simple meryl/mapMers meryl/mapMers-depth meryl/kmer-mask meryl/libmerylguts.a meryl/Make.depends meryl/args.C.d meryl/binaryOp.C.d meryl/build.C.d meryl/build-threads.C.d meryl/dump.C.d meryl/estimate.C.d meryl/merge.C.d meryl/unaryOp.C.d meryl/meryl.C.d meryl/simple.C.d meryl/mapMers.C.d meryl/mapMers-depth.C.d meryl/kmer-mask.C.d rm -f seagen/*.o seagen/seagen seagen/hitConverter seagen/filterEST seagen/filterMRNA seagen/filterNULL seagen/filtertest seagen/sortHits seagen/filterESTsimple seagen/Make.depends seagen/searchGENOME.C.d seagen/configuration.C.d seagen/encodedQuery.C.d seagen/thr-deadlock.C.d seagen/thr-loader.C.d seagen/thr-search.C.d seagen/thr-output.C.d seagen/hitMatrix-sort.C.d seagen/aHit.C.d seagen/hitConverter.C.d seagen/filterEST.C.d seagen/filterEST-complicated.C.d seagen/filterMRNA.C.d seagen/filterNULL.C.d seagen/sortHits.C.d seagen/filtertest.C.d seagen/hitReader.C.d seagen/hitMatrix.C.d rm -f sim4dbutils/*.o sim4dbutils/cleanPolishes sim4dbutils/fixPolishesIID sim4dbutils/comparePolishes sim4dbutils/convertToAtac sim4dbutils/convertToExtent sim4dbutils/convertPolishes sim4dbutils/detectChimera sim4dbutils/depthOfPolishes sim4dbutils/filterPolishes sim4dbutils/headPolishes sim4dbutils/mappedCoverage sim4dbutils/mergePolishes sim4dbutils/parseSNP sim4dbutils/pickBestPolish sim4dbutils/pickBestPair sim4dbutils/pickUniquePolish sim4dbutils/plotCoverageVsIdentity sim4dbutils/removeDuplicate sim4dbutils/sortPolishes sim4dbutils/summarizePolishes sim4dbutils/uniqPolishes sim4dbutils/vennPolishes sim4dbutils/realignPolishes sim4dbutils/removeRedundant sim4dbutils/reportAlignmentDifferences sim4dbutils/Make.depends sim4dbutils/cleanPolishes.C.d sim4dbutils/fixPolishesIID.C.d sim4dbutils/comparePolishes.C.d sim4dbutils/convertToAtac.C.d sim4dbutils/convertToExtent.C.d sim4dbutils/convertPolishes.C.d sim4dbutils/detectChimera.C.d sim4dbutils/depthOfPolishes.C.d sim4dbutils/filterPolishes.C.d sim4dbutils/headPolishes.C.d sim4dbutils/mappedCoverage.C.d sim4dbutils/mergePolishes.C.d sim4dbutils/parseSNP.C.d sim4dbutils/pickBestPolish.C.d sim4dbutils/pickBestPair.C.d sim4dbutils/pickUniquePolish.C.d sim4dbutils/plotCoverageVsIdentity.C.d sim4dbutils/removeDuplicate.C.d sim4dbutils/sortPolishes.C.d sim4dbutils/summarizePolishes.C.d sim4dbutils/uniqPolishes.C.d sim4dbutils/vennPolishes.C.d sim4dbutils/realignPolishes.C.d sim4dbutils/removeRedundant.C.d sim4dbutils/reportAlignmentDifferences.C.d sim4dbutils/s4p_overlap.C.d rm -f sim4db/*.o sim4db/sim4db sim4db/Make.depends sim4db/sim4th.C.d rm -f snapper/*.o snapper/snapper2 snapper/Make.depends snapper/snapper2.C.d snapper/configuration.C.d snapper/thr-search.C.d snapper/thr-filter.C.d snapper/thr-polish.C.d snapper/thr-polish-dp.C.d snapper/hitMatrix.C.d snapper/hitMatrix-sort.C.d rm -f tapper/*.o tapper/tagger tapper/tapper tapper/tapperconvert tapper/tappermerge tapper/tappersort tapper/tappererrorcorrect tapper/Make.depends tapper/tagger.C.d tapper/tapper.C.d tapper/tapperconvert.C.d tapper/tappermerge.C.d tapper/tappersort.C.d tapper/tappererrorcorrect.C.d rm -f /<>/kmer-0~20150903+r2013/libsim4/*.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/*.o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/*.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libsim4/Make.depends /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4parameters.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4string.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/Xtend1.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/align.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/exon_cores.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/extend.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/glimmerSplice.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/greedy.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/mspManager.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/pluri_align.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/poly.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1a.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-1.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-2.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-3.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-4.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1_s.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_donor.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_acceptor.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_score.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/splice.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/table.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4core/util.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-compare.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-copy.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-deleteexon.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-exons.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-read.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-updatescores.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishList.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishBuilder.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishReader.C.d /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishWriter.C.d rm -f /<>/kmer-0~20150903+r2013/libkmer/*.o /<>/kmer-0~20150903+r2013/libkmer/existDB /<>/kmer-0~20150903+r2013/libkmer/positionDB /<>/kmer-0~20150903+r2013/libkmer/libkmer.a /<>/kmer-0~20150903+r2013/libkmer/Make.depends /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-fasta.C.d /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C.d /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-sequence.C.d /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C.d /<>/kmer-0~20150903+r2013/libkmer/existDB.C.d /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.C.d /<>/kmer-0~20150903+r2013/libkmer/positionDB-dump.C.d /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C.d /<>/kmer-0~20150903+r2013/libkmer/positionDB-mismatch.C.d /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C.d /<>/kmer-0~20150903+r2013/libkmer/positionDB.C.d /<>/kmer-0~20150903+r2013/libkmer/driver-existDB.C.d /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C.d rm -f /<>/kmer-0~20150903+r2013/libmeryl/*.o /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a /<>/kmer-0~20150903+r2013/libmeryl/Make.depends /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C.d rm -f /<>/kmer-0~20150903+r2013/libbio/*.o /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libbio/Make.depends /<>/kmer-0~20150903+r2013/libbio/alphabet.c.d /<>/kmer-0~20150903+r2013/libbio/alphabet-acgtspace.c.d /<>/kmer-0~20150903+r2013/libbio/alphabet-colorspace.c.d /<>/kmer-0~20150903+r2013/libbio/halign.c.d /<>/kmer-0~20150903+r2013/libbio/reversecomplement.c.d /<>/kmer-0~20150903+r2013/libbio/kmer.C.d rm -f /<>/kmer-0~20150903+r2013/libseq/*.o /<>/kmer-0~20150903+r2013/libseq/test-seqCache /<>/kmer-0~20150903+r2013/libseq/test-seqStream /<>/kmer-0~20150903+r2013/libseq/test-merStream /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libseq/Make.depends /<>/kmer-0~20150903+r2013/libseq/fastaFile.C.d /<>/kmer-0~20150903+r2013/libseq/fastaStdin.C.d /<>/kmer-0~20150903+r2013/libseq/fastqFile.C.d /<>/kmer-0~20150903+r2013/libseq/fastqStdin.C.d /<>/kmer-0~20150903+r2013/libseq/seqStore.C.d /<>/kmer-0~20150903+r2013/libseq/sffFile.C.d /<>/kmer-0~20150903+r2013/libseq/seqFactory.C.d /<>/kmer-0~20150903+r2013/libseq/seqCache.C.d /<>/kmer-0~20150903+r2013/libseq/seqStream.C.d /<>/kmer-0~20150903+r2013/libseq/merStream.C.d /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C.d /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C.d /<>/kmer-0~20150903+r2013/libseq/test-merStream.C.d rm -f /<>/kmer-0~20150903+r2013/libutil/mt19937ar/*.o /<>/kmer-0~20150903+r2013/libutil/mt19937ar/test.c /<>/kmer-0~20150903+r2013/libutil/mt19937ar/diffs /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar-test /<>/kmer-0~20150903+r2013/libutil/mt19937ar/libmt19937ar.a /<>/kmer-0~20150903+r2013/libutil/mt19937ar/Make.depends /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar.c.d /<>/kmer-0~20150903+r2013/libutil/mt19937ar/test.c.d /<>/kmer-0~20150903+r2013/libutil/mt19937ar/*.o /<>/kmer-0~20150903+r2013/libutil/mt19937ar/test.c /<>/kmer-0~20150903+r2013/libutil/mt19937ar/diffs /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar-test rm -f /<>/kmer-0~20150903+r2013/libutil/kazlib/*.o /<>/kmer-0~20150903+r2013/libutil/kazlib/libkaz.a /<>/kmer-0~20150903+r2013/libutil/kazlib/Make.depends /<>/kmer-0~20150903+r2013/libutil/kazlib/dict.c.d /<>/kmer-0~20150903+r2013/libutil/kazlib/except.c.d /<>/kmer-0~20150903+r2013/libutil/kazlib/hash.c.d /<>/kmer-0~20150903+r2013/libutil/kazlib/list.c.d /<>/kmer-0~20150903+r2013/libutil/kazlib/sfx.c.d rm -f /<>/kmer-0~20150903+r2013/libutil/*.o /<>/kmer-0~20150903+r2013/libutil/libutil.a /<>/kmer-0~20150903+r2013/libutil/Make.depends /<>/kmer-0~20150903+r2013/libutil/file.c.d /<>/kmer-0~20150903+r2013/libutil/md5.c.d /<>/kmer-0~20150903+r2013/libutil/palloc.c.d /<>/kmer-0~20150903+r2013/libutil/qsort_mt.c.d /<>/kmer-0~20150903+r2013/libutil/util.c.d /<>/kmer-0~20150903+r2013/libutil/bigQueue.C.d /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.C.d /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.C.d /<>/kmer-0~20150903+r2013/libutil/fibonacciNumbers.C.d /<>/kmer-0~20150903+r2013/libutil/readBuffer.C.d /<>/kmer-0~20150903+r2013/libutil/recordFile.C.d /<>/kmer-0~20150903+r2013/libutil/speedCounter.C.d /<>/kmer-0~20150903+r2013/libutil/sweatShop.C.d rm -f Make.depends Make.compilers make[2]: Leaving directory '/<>/kmer-0~20150903+r2013' rm -rf installdir make[1]: Leaving directory '/<>/kmer-0~20150903+r2013' dh_clean debian/rules build-arch dh build-arch --with python2 dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>/kmer-0~20150903+r2013' /usr/bin/make install \ CLDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" \ CXXLDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>/kmer-0~20150903+r2013' making /<>/kmer-0~20150903+r2013/libutil/kazlib/sfx.c.d making /<>/kmer-0~20150903+r2013/libutil/kazlib/list.c.d making /<>/kmer-0~20150903+r2013/libutil/kazlib/hash.c.d making /<>/kmer-0~20150903+r2013/libutil/kazlib/except.c.d making /<>/kmer-0~20150903+r2013/libutil/kazlib/dict.c.d gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar.o -c /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar.c /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar.c: In function ‘mtRandomGaussian’: /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar.c:166:34: warning: variable ‘y2’ set but not used [-Wunused-but-set-variable] double x1=0, x2=0, w=0, y1=0, y2=0; ^~ gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar-test.o -c /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar-test.c gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar-test /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar.o /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar-test.o -pthread -ldl -lm /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar-test | diff - /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar.out > /<>/kmer-0~20150903+r2013/libutil/mt19937ar/diffs 2>&1 if test -s /<>/kmer-0~20150903+r2013/libutil/mt19937ar/diffs ; then echo 'MT19937: TEST FAILED'; else echo 'MT19937: Test Passed'; fi MT19937: Test Passed touch /<>/kmer-0~20150903+r2013/libutil/mt19937ar/test.c /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar-test | diff - /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar.out making /<>/kmer-0~20150903+r2013/libutil/mt19937ar/test.c.d making /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar.c.d making /<>/kmer-0~20150903+r2013/libutil/sweatShop.C.d making /<>/kmer-0~20150903+r2013/libutil/speedCounter.C.d making /<>/kmer-0~20150903+r2013/libutil/recordFile.C.d making /<>/kmer-0~20150903+r2013/libutil/readBuffer.C.d making /<>/kmer-0~20150903+r2013/libutil/fibonacciNumbers.C.d making /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.C.d making /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.C.d making /<>/kmer-0~20150903+r2013/libutil/bigQueue.C.d making /<>/kmer-0~20150903+r2013/libutil/util.c.d making /<>/kmer-0~20150903+r2013/libutil/qsort_mt.c.d making /<>/kmer-0~20150903+r2013/libutil/palloc.c.d making /<>/kmer-0~20150903+r2013/libutil/md5.c.d making /<>/kmer-0~20150903+r2013/libutil/file.c.d making /<>/kmer-0~20150903+r2013/libseq/test-merStream.C.d making /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C.d making /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C.d making /<>/kmer-0~20150903+r2013/libseq/merStream.C.d making /<>/kmer-0~20150903+r2013/libseq/seqStream.C.d making /<>/kmer-0~20150903+r2013/libseq/seqCache.C.d making /<>/kmer-0~20150903+r2013/libseq/seqFactory.C.d making /<>/kmer-0~20150903+r2013/libseq/sffFile.C.d making /<>/kmer-0~20150903+r2013/libseq/seqStore.C.d making /<>/kmer-0~20150903+r2013/libseq/fastqStdin.C.d making /<>/kmer-0~20150903+r2013/libseq/fastqFile.C.d making /<>/kmer-0~20150903+r2013/libseq/fastaStdin.C.d making /<>/kmer-0~20150903+r2013/libseq/fastaFile.C.d making /<>/kmer-0~20150903+r2013/libbio/kmer.C.d making /<>/kmer-0~20150903+r2013/libbio/reversecomplement.c.d making /<>/kmer-0~20150903+r2013/libbio/halign.c.d making /<>/kmer-0~20150903+r2013/libbio/alphabet-colorspace.c.d making /<>/kmer-0~20150903+r2013/libbio/alphabet-acgtspace.c.d making /<>/kmer-0~20150903+r2013/libbio/alphabet.c.d making /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C.d making /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C.d making /<>/kmer-0~20150903+r2013/libkmer/driver-existDB.C.d making /<>/kmer-0~20150903+r2013/libkmer/positionDB.C.d making /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C.d making /<>/kmer-0~20150903+r2013/libkmer/positionDB-mismatch.C.d making /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C.d making /<>/kmer-0~20150903+r2013/libkmer/positionDB-dump.C.d making /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.C.d making /<>/kmer-0~20150903+r2013/libkmer/existDB.C.d making /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C.d making /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-sequence.C.d making /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C.d making /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-fasta.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishWriter.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishReader.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishBuilder.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishList.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-updatescores.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-read.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-exons.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-deleteexon.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-copy.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-compare.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/util.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/table.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/splice.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_score.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_acceptor.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_donor.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1_s.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-4.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-3.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-2.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-1.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1a.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/poly.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/pluri_align.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/mspManager.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/greedy.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/glimmerSplice.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/extend.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/exon_cores.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/align.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/Xtend1.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4string.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4parameters.C.d making /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.C.d making tapper/tappererrorcorrect.C.d making tapper/tappersort.C.d making tapper/tappermerge.C.d making tapper/tapperconvert.C.d making tapper/tapper.C.d making tapper/tagger.C.d making snapper/hitMatrix-sort.C.d making snapper/hitMatrix.C.d making snapper/thr-polish-dp.C.d making snapper/thr-polish.C.d making snapper/thr-filter.C.d making snapper/thr-search.C.d making snapper/configuration.C.d making snapper/snapper2.C.d making sim4db/sim4th.C.d making sim4dbutils/s4p_overlap.C.d making sim4dbutils/reportAlignmentDifferences.C.d making sim4dbutils/removeRedundant.C.d making sim4dbutils/realignPolishes.C.d making sim4dbutils/vennPolishes.C.d making sim4dbutils/uniqPolishes.C.d making sim4dbutils/summarizePolishes.C.d making sim4dbutils/sortPolishes.C.d making sim4dbutils/removeDuplicate.C.d making sim4dbutils/plotCoverageVsIdentity.C.d making sim4dbutils/pickUniquePolish.C.d making sim4dbutils/pickBestPair.C.d making sim4dbutils/pickBestPolish.C.d making sim4dbutils/parseSNP.C.d making sim4dbutils/mergePolishes.C.d making sim4dbutils/mappedCoverage.C.d making sim4dbutils/headPolishes.C.d making sim4dbutils/filterPolishes.C.d making sim4dbutils/depthOfPolishes.C.d making sim4dbutils/detectChimera.C.d making sim4dbutils/convertPolishes.C.d making sim4dbutils/convertToExtent.C.d making sim4dbutils/convertToAtac.C.d making sim4dbutils/comparePolishes.C.d making sim4dbutils/fixPolishesIID.C.d making sim4dbutils/cleanPolishes.C.d making seagen/hitMatrix.C.d making seagen/hitReader.C.d making seagen/filtertest.C.d making seagen/sortHits.C.d making seagen/filterNULL.C.d making seagen/filterMRNA.C.d making seagen/filterEST-complicated.C.d making seagen/filterEST.C.d making seagen/hitConverter.C.d making seagen/aHit.C.d making seagen/hitMatrix-sort.C.d making seagen/thr-output.C.d making seagen/thr-search.C.d making seagen/thr-loader.C.d making seagen/thr-deadlock.C.d making seagen/encodedQuery.C.d making seagen/configuration.C.d making seagen/searchGENOME.C.d making meryl/kmer-mask.C.d making meryl/mapMers-depth.C.d making meryl/mapMers.C.d making meryl/simple.C.d making meryl/meryl.C.d making meryl/unaryOp.C.d making meryl/merge.C.d making meryl/estimate.C.d making meryl/dump.C.d making meryl/build-threads.C.d making meryl/build.C.d making meryl/binaryOp.C.d making meryl/args.C.d making leaff/stats.C.d making leaff/simseq.C.d making leaff/partition.C.d making leaff/gc.C.d making leaff/dups.C.d making leaff/blocks.C.d making leaff/leaff.C.d making seatac/hitMatrix-sort.C.d making seatac/thr-deadlock.C.d making seatac/thr-loader.C.d making seatac/thr-search.C.d making seatac/hitMatrix.C.d making seatac/encodedQuery.C.d making seatac/configuration.C.d making seatac/seatac.C.d making atac-driver/chimera/happy-clones-span-clumps.C.d making atac-driver/chainer/halign/halignmodule.C.d making atac-driver/chainer/halign/halign.C.d making atac-driver/chainer/localalign/localAlignerInterfacemodule.C.d making atac-driver/chainer/localalign/GF_ALN_pieceOlap.C.d making atac-driver/chainer/localalign/GF_ALN_loverlapper.C.d making atac-driver/chainer/localalign/GF_ALN_overlap.C.d making atac-driver/chainer/localalign/GF_ALN_local.C.d making atac-driver/chainer/localalign/GF_ALN_dpaligner.C.d making atac-driver/clumpMaker/clumpMaker.C.d making atac-driver/uniqueFilter/uniqueFilter.C.d making atac-driver/statsGenerator/statsGenerator.C.d making atac-driver/mismatchCounter/mismatchCounter.C.d making atac-driver/matchExtender/matchExtender-func.C.d making atac-driver/matchExtender/matchExtender-dump.C.d making atac-driver/matchExtender/matchExtender.C.d making atac-driver/lengthFilter/lengthFilter.C.d making atac-driver/gapShifter/projectFeatures.C.d making atac-driver/gapShifter/cleanAtac.C.d making atac-driver/gapShifter/testAtac.C.d making atac-driver/gapShifter/correctGaps.C.d making atac-driver/gapShifter/coalesceMatches.C.d making atac-driver/gapShifter/extractUnmapped.C.d making atac-driver/gapShifter/extractSequence.C.d making atac-driver/gapShifter/gapShifter.C.d making atac-driver/alignOverlap/overlap-find.C.d making atac-driver/alignOverlap/overlap-printAnno.C.d making atac-driver/alignOverlap/overlap-sort.C.d making atac-driver/alignOverlap/overlap.C.d making atac-driver/libatac/atacMatchOrder.C.d making atac-driver/libatac/atacMatchList.C.d making atac-driver/libatac/atacMatch.C.d making atac-driver/libatac/atacFileStreamMerge.C.d making atac-driver/libatac/atacFile.C.d making atac-driver/libatac/atacFeatureList.C.d making atac-driver/libatac/atacFeature.C.d making ESTmapper/terminate.C.d making ESTmapper/mergeCounts.C.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ESTmapper/mergeCounts.o -c ESTmapper/mergeCounts.C ESTmapper/mergeCounts.C: In function ‘int main(int, char**)’: ESTmapper/mergeCounts.C:33:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, 256, Fs[i]); ~~~~~^~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ESTmapper/mergeCounts ESTmapper/mergeCounts.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ESTmapper/terminate.o -c ESTmapper/terminate.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from ESTmapper/terminate.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from ESTmapper/terminate.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from ESTmapper/terminate.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from ESTmapper/terminate.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ ESTmapper/terminate.C: In member function ‘void iidReaderWriter::load(uint32)’: ESTmapper/terminate.C:82:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, uint32FMT, &iid); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ESTmapper/terminate.C:85:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, uint32FMT, &iid); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.C:5: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.C: In member function ‘void sim4command::finalize()’: /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.C:147:6: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] if (_genLo > _genHi) ^ /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.C: In member function ‘char* sim4command::getESTheader()’: /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.C:184:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] static char *xxx = "anonymous cDNA sequence"; ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.C: In member function ‘char* sim4command::getGENheader()’: /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.C:222:15: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] char *xxx = "anonymous genomic sequence"; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4parameters.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4parameters.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/mspManager.H:8, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4parameters.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4parameters.C:2: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/mspManager.H:8, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4parameters.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4parameters.C:2: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/mspManager.H:8, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4parameters.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4parameters.C:2: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/mspManager.H:8, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4parameters.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4parameters.C:2: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4string.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4string.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4string.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4string.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4string.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4string.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4string.C: In member function ‘void Sim4::IDISPLAY(sim4polishBuilder&, char*, char*, char*, char*, int, int, int*, int, int, int, Exon*)’: /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4string.C:682:71: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] "Empty exon list; no alignment possible!"); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4string.C:682:71: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4string.C:695:84: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] "Alignment fragment not found; no alignment possible!"); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4string.C:695:84: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/Xtend1.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/Xtend1.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/Xtend1.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/Xtend1.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/Xtend1.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/Xtend1.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/align.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/align.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/align.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/align.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/align.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/align.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/exon_cores.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/exon_cores.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/exon_cores.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/exon_cores.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/exon_cores.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/exon_cores.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/extend.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/extend.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/extend.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/extend.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/extend.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/extend.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/glimmerSplice.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/glimmerSplice.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/glimmerSplice.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/glimmerSplice.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/glimmerSplice.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/glimmerSplice.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libsim4/sim4core/glimmerSplice.C: In function ‘void readModel(Fixed_Length_ICM_t*, const char*)’: /<>/kmer-0~20150903+r2013/libsim4/sim4core/glimmerSplice.C:53:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (line, sizeof (char), ID_STRING_LEN, fp); // skip the text header line ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4core/glimmerSplice.C:84:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread ((*fixed).permutation, sizeof (int), (*fixed).length, fp); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/greedy.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/greedy.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/greedy.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/greedy.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/greedy.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/greedy.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/mspManager.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/mspManager.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/mspManager.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/mspManager.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/mspManager.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/mspManager.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/pluri_align.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/pluri_align.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/pluri_align.C:2: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/pluri_align.C:2: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/pluri_align.C:2: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/pluri_align.C:2: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/poly.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/poly.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/poly.C:2: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/poly.C:2: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/poly.C:2: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/poly.C:2: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1a.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1a.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1a.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1a.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1a.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1a.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-1.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-1.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-1.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-1.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-1.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-1.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-2.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-2.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-2.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-2.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-2.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-2.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-3.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-3.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-3.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-3.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-3.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-3.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-4.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-4.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-4.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-4.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-4.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-4.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1_s.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1_s.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1_s.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1_s.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1_s.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1_s.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites.C:4: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites.C:4: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites.C:4: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites.C:4: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites.C: In function ‘int readtree(Sim4*, char*, tree*, int)’: /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites.C:452:6: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] int len; ^~~ /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites.C: In function ‘int Is_Cod_NonCod(const int*, double*, int)’: /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites.C:791:62: warning: ‘scores’ may be used uninitialized in this function [-Wmaybe-uninitialized] Cod_Negative_Table[no][i][j][k] = scores[idx++]; ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_donor.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_donor.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_donor.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_donor.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_donor.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_donor.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_acceptor.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_acceptor.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_acceptor.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_acceptor.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_acceptor.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_acceptor.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_score.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_score.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_score.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_score.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_score.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_score.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/splice.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/splice.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/splice.C:2: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/splice.C:2: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/splice.C:2: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/splice.C:2: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/table.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/table.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/table.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/table.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/table.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/table.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libsim4/sim4core/table.C: In member function ‘void Sim4::bld_table(char*, int, mss_t, int)’: /<>/kmer-0~20150903+r2013/libsim4/sim4core/table.C:112:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (emer < 0) ^~ /<>/kmer-0~20150903+r2013/libsim4/sim4core/table.C:115:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ ecode <<= 2; ^~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4core/util.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4core/util.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/util.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/util.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/util.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4core/util.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-compare.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-compare.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-compare.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-compare.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-compare.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-compare.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-compare.C:249:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "s4p_compareExons()-- Can't allocate "uint32FMT" + "uint32FMT" words for counting exons.\n%s\n", A->_numExons, B->_numExons, strerror(errno)); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-compare.C:249:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "s4p_compareExons()-- Can't allocate "uint32FMT" + "uint32FMT" words for counting exons.\n%s\n", A->_numExons, B->_numExons, strerror(errno)); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-compare.C:365:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "s4p_compareExons()-- Can't allocate "uint32FMT" + "uint32FMT" words for counting exons.\n%s\n", A->_numExons, B->_numExons, strerror(errno)); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-compare.C:365:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "s4p_compareExons()-- Can't allocate "uint32FMT" + "uint32FMT" words for counting exons.\n%s\n", A->_numExons, B->_numExons, strerror(errno)); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-copy.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-copy.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-copy.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-copy.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-copy.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-copy.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-deleteexon.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-deleteexon.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-deleteexon.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-deleteexon.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-deleteexon.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-deleteexon.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-exons.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-exons.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-exons.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-exons.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-exons.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-exons.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:58:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(gpp, "%c"uint32FMT" ", gaptyp, gapcnt); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:68:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(gpp, "%c"uint32FMT" ", gaptyp, gapcnt); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:80:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(gpp, "%c"uint32FMT" ", gaptyp, gapcnt); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:91:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(gpp, "%c"uint32FMT"", gaptyp, gapcnt); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sim4reader: Unknown matchOrientation '"uint32FMT"' in printPolish()\n", _matchOrientation); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:176:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sim4reader: Unknown strandOrientation '"uint32FMT"' in printPolish()\n", _matchOrientation); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:181:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:181:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:181:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:181:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:181:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:181:88: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:181:100: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:181:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:181:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:181:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:212:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:212:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:212:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:212:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:212:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:212:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:212:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:323:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sim4reader: Unknown strandOrientation '"uint32FMT"' in printPolishGFF3()\n", _matchOrientation); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:346:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:346:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:346:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:350:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "ID=sim4db"uint32FMT";Name="uint32FMT":%s;Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:350:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "ID=sim4db"uint32FMT";Name="uint32FMT":%s;Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:350:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "ID=sim4db"uint32FMT";Name="uint32FMT":%s;Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:350:76: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "ID=sim4db"uint32FMT";Name="uint32FMT":%s;Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:350:91: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "ID=sim4db"uint32FMT";Name="uint32FMT":%s;Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:354:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "targetLen="uint32FMT";pA="uint32FMT";pT="uint32FMT";genRegion="uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:354:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "targetLen="uint32FMT";pA="uint32FMT";pT="uint32FMT";genRegion="uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:354:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "targetLen="uint32FMT";pA="uint32FMT";pT="uint32FMT";genRegion="uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:354:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "targetLen="uint32FMT";pA="uint32FMT";pT="uint32FMT";genRegion="uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:354:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "targetLen="uint32FMT";pA="uint32FMT";pT="uint32FMT";genRegion="uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:363:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:363:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:363:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:368:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;Gap=%s;nMatches="uint32FMT"", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:368:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;Gap=%s;nMatches="uint32FMT"", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:368:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;Gap=%s;nMatches="uint32FMT"", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:368:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;Gap=%s;nMatches="uint32FMT"", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:368:91: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;Gap=%s;nMatches="uint32FMT"", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:371:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;nMatches="uint32FMT"", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:371:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;nMatches="uint32FMT"", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:371:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;nMatches="uint32FMT"", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:371:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;nMatches="uint32FMT"", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.C:371:91: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;nMatches="uint32FMT"", ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-read.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-read.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-read.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-read.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-read.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-read.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-read.C:46:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sim4reader: Got '%s', expecting 'sim4begin' at byte "uint64FMT"\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-read.C:65:2: warning: #warning LAZY PROGRAMMER did not extend an array [-Wcpp] #warning LAZY PROGRAMMER did not extend an array ^~~~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-read.C:126:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sim4reader: Got '%s', expecting GFF3 mRNA line at byte "uint64FMT"\n", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-read.C:150:2: warning: #warning LAZY PROGRAMMER did not extend an array [-Wcpp] #warning LAZY PROGRAMMER did not extend an array ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:42:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:42:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:42:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:42:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:42:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:42:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:42:104: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:42:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:42:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:42:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:55:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sim4polish::s4p_linesToPolishS4DB()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:72:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sim4polish::s4p_linesToPolishS4DB()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sim4polish::s4p_linesToPolishS4DB()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:127:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:127:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:127:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:127:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:127:76: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:127:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:127:102: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:169:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sim4polish::s4p_linesToPolishS4DB()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:243:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:243:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:243:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:243:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:246:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sim4polish::s4p_linesToPolishGFF3()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:275:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(crttok, "ID=sim4db"uint32FMT"", &matchID); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:280:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(crttok, "Name="uint32FMT":%s", &_estID, _estDefLine); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:285:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(crttok, "Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c", &_estID, _estDefLine, &dummy1, &dummy2, &mOri); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:285:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(crttok, "Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c", &_estID, _estDefLine, &dummy1, &dummy2, &mOri); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:285:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(crttok, "Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c", &_estID, _estDefLine, &dummy1, &dummy2, &mOri); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:293:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(crttok, "targetLen="uint32FMT"", &_estLen); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:296:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(crttok, "pA="uint32FMT"", &_estPolyA); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:299:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(crttok, "pT="uint32FMT"", &_estPolyT); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:302:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(crttok, "genRegion="uint32FMT"-"uint32FMT"", &_genRegionOffset, &dummy1); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:302:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(crttok, "genRegion="uint32FMT"-"uint32FMT"", &_genRegionOffset, &dummy1); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:313:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sim4polish::s4p_linesToPolishGFF3()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:339:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:339:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:339:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:339:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:342:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sim4polish::s4p_linesToPolishGFF3()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:366:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(crttok, "Parent=sim4db"uint32FMT"", &dummy1); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:370:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(crttok, "Target=%s "uint32FMT" "uint32FMT" %c", &dummybuf, &exon._estFrom, &exon._estTo, &mOri); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:370:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(crttok, "Target=%s "uint32FMT" "uint32FMT" %c", &dummybuf, &exon._estFrom, &exon._estTo, &mOri); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:377:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] r = sscanf(crttok, "nMatches="uint32FMT"", &exon._numMatches); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:403:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sim4polish::s4p_linesToPolishGFF3()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:437:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sim4polish::s4p_linesToPolishGFF3()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C: In member function ‘void sim4polish::s4p_linesToPolishS4DB(uint32, uint32, char**, uint32*)’: /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:140:61: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘class sim4polishExon’; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(nnn, _exons, sizeof(sim4polishExon) * _numExons); ^ In file included from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:1: /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:49:7: note: ‘class sim4polishExon’ declared here class sim4polishExon { ^~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C: In member function ‘void sim4polish::s4p_linesToPolishGFF3(uint32, uint32, char**, uint32*)’: /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:261:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:261:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:262:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:262:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:263:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:263:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:264:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:264:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:265:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:265:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:266:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:266:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:267:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:267:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:268:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:268:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:346:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] if ((dummy1 != _genID) || strcmp(dummybuf, _genDefLine) || ~~~~~~~^~~~~~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:347:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] (sOri != '+') && (sOri != '-') && (sOri != '.')) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:352:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:352:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:353:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:353:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:354:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:354:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:355:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:355:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:356:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:356:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:357:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:357:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:358:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:358:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:359:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:359:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ while (*clptr!='\t') clptr++; clptr++; ^~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:370:30: warning: format ‘%s’ expects argument of type ‘char*’, but argument 3 has type ‘char (*)[1000]’ [-Wformat=] r = sscanf(crttok, "Target=%s "uint32FMT" "uint32FMT" %c", &dummybuf, &exon._estFrom, &exon._estTo, &mOri); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:383:30: warning: format ‘%s’ expects argument of type ‘char*’, but argument 3 has type ‘char (*)[1000]’ [-Wformat=] r = sscanf(crttok, "intron=%s", &dummybuf); ^~~~~~~~~~~ ~~~~~~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:414:61: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘class sim4polishExon’; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(nnn, _exons, sizeof(sim4polishExon) * _numExons); ^ In file included from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.C:1: /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:49:7: note: ‘class sim4polishExon’ declared here class sim4polishExon { ^~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-updatescores.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-updatescores.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-updatescores.C:2: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-updatescores.C:2: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-updatescores.C:2: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-updatescores.C:2: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishList.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishList.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishList.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishList.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishList.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishList.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishBuilder.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishBuilder.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishBuilder.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishBuilder.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishBuilder.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishBuilder.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishBuilder.C: In member function ‘sim4polish* sim4polishBuilder::release()’: /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishBuilder.C:246:57: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘class sim4polishExon’; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(it->_exons + i, ex[i], sizeof(sim4polishExon)); ^ In file included from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishBuilder.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishBuilder.C:7: /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:49:7: note: ‘class sim4polishExon’ declared here class sim4polishExon { ^~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Failed to reposition %s to record "uint32FMT", only "uint32FMT" records\n", _path, ordinal, _polishRecordLen), exit(1); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C:120:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Failed to reposition %s to record "uint32FMT", only "uint32FMT" records\n", _path, ordinal, _polishRecordLen), exit(1); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C:248:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "polishes: "uint32FMT"\r", _polishRecordLen); ^ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C: In member function ‘void sim4polishFile::loadIndex()’: /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C:141:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&magic, sizeof(char), 8, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C:145:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_polishRecordLen, sizeof(uint32), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C:151:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread( _polishRecord, sizeof(polishRecord), _polishRecordLen, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C:152:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread( _polishRecordEST, sizeof(uint32), _polishRecordLen, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C:153:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread( _polishRecordGEN, sizeof(uint32), _polishRecordLen, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C:155:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_maxEST, sizeof(uint32), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C:156:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_maxGEN, sizeof(uint32), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C:161:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread( _ESTiidLocation, sizeof(uint32), _maxEST, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.C:162:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread( _GENiidLocation, sizeof(uint32), _maxGEN, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishReader.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishReader.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishReader.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishReader.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishReader.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishReader.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishReader.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishReader.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishReader.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishReader.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/sim4polish/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishWriter.o -c /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishWriter.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishWriter.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishWriter.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishWriter.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishWriter.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishWriter.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishWriter.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishWriter.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishWriter.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ rm -f /<>/kmer-0~20150903+r2013/libsim4/libsim4.a && ar ruvs /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4parameters.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4string.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/Xtend1.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/align.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/exon_cores.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/extend.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/glimmerSplice.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/greedy.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/mspManager.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/pluri_align.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/poly.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1a.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-1.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-2.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-3.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-4.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1_s.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_donor.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_acceptor.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_score.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/splice.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/table.o /<>/kmer-0~20150903+r2013/libsim4/sim4core/util.o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-compare.o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-copy.o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-deleteexon.o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-exons.o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-read.o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-updatescores.o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishList.o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishBuilder.o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishReader.o /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishWriter.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/kmer-0~20150903+r2013/libsim4/libsim4.a a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4command.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4parameters.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4string.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/Xtend1.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/align.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/exon_cores.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/extend.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/glimmerSplice.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/greedy.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/mspManager.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/pluri_align.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/poly.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1a.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-1.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-2.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-3.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1-4.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/sim4b1_s.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_donor.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_acceptor.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/sites_score.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/splice.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/table.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4core/util.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-compare.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-copy.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-deleteexon.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-exons.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-polishtostring.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-read.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-stringtopolish.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish-updatescores.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishList.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishBuilder.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishFile.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishReader.o a - /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polishWriter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libseq/fastaFile.o -c /<>/kmer-0~20150903+r2013/libseq/fastaFile.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastaFile.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastaFile.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libseq/fastaFile.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastaFile.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libseq/fastaFile.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastaFile.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libseq/fastaFile.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastaFile.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libseq/fastaFile.C:151:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "fastaFile::getSequence(full)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/fastaFile.C:151:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "fastaFile::getSequence(full)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/fastaFile.C:252:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "fastaFile::getSequence(part)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/fastaFile.C:252:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "fastaFile::getSequence(part)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/fastaFile.C: In member function ‘void fastaFile::loadIndex(char*)’: /<>/kmer-0~20150903+r2013/libseq/fastaFile.C:357:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_header, sizeof(fastaFileHeader), 1, I); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libseq/fastaFile.C:379:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(_index, sizeof(fastaFileIndex), _header._numberOfSequences, I); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libseq/fastaFile.C:380:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(_names, sizeof(char), _header._namesLength, I); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libseq/fastaStdin.o -c /<>/kmer-0~20150903+r2013/libseq/fastaStdin.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastaStdin.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastaStdin.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libseq/fastaStdin.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastaStdin.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libseq/fastaStdin.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastaStdin.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libseq/fastaStdin.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastaStdin.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libseq/fastaStdin.C: In member function ‘virtual bool fastaStdin::getSequence(uint32, char*&, uint32&, uint32&, char*&, uint32&, uint32&)’: /<>/kmer-0~20150903+r2013/libseq/fastaStdin.C:110:9: warning: unused variable ‘ret’ [-Wunused-variable] bool ret = true; ^~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libseq/fastqFile.o -c /<>/kmer-0~20150903+r2013/libseq/fastqFile.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastqFile.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastqFile.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libseq/fastqFile.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastqFile.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libseq/fastqFile.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastqFile.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libseq/fastqFile.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastqFile.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libseq/fastqFile.C:141:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "fastqFile::getSequence(full)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/fastqFile.C:141:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "fastqFile::getSequence(full)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/fastqFile.C:253:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "fastqFile::getSequence(part)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/fastqFile.C:253:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "fastqFile::getSequence(part)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/fastqFile.C:533:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "REALLOC len="uint32FMT" from "uint32FMT" to "uint32FMT"\n", indexLen, indexMax, indexMax * 2); ^ /<>/kmer-0~20150903+r2013/libseq/fastqFile.C:533:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "REALLOC len="uint32FMT" from "uint32FMT" to "uint32FMT"\n", indexLen, indexMax, indexMax * 2); ^ /<>/kmer-0~20150903+r2013/libseq/fastqFile.C:533:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "REALLOC len="uint32FMT" from "uint32FMT" to "uint32FMT"\n", indexLen, indexMax, indexMax * 2); ^ /<>/kmer-0~20150903+r2013/libseq/fastqFile.C: In member function ‘void fastqFile::loadIndex(char*)’: /<>/kmer-0~20150903+r2013/libseq/fastqFile.C:354:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_header, sizeof(fastqFileHeader), 1, I); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libseq/fastqFile.C:374:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(_index, sizeof(fastqFileIndex), _header._numberOfSequences, I); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libseq/fastqFile.C:375:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(_names, sizeof(char), _header._namesLength, I); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libseq/fastqStdin.o -c /<>/kmer-0~20150903+r2013/libseq/fastqStdin.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastqStdin.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastqStdin.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libseq/fastqStdin.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastqStdin.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libseq/fastqStdin.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastqStdin.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libseq/fastqStdin.H:4, from /<>/kmer-0~20150903+r2013/libseq/fastqStdin.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libseq/fastqStdin.C: In member function ‘virtual bool fastqStdin::getSequence(uint32, char*&, uint32&, uint32&, char*&, uint32&, uint32&)’: /<>/kmer-0~20150903+r2013/libseq/fastqStdin.C:110:9: warning: unused variable ‘ret’ [-Wunused-variable] bool ret = true; ^~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libseq/seqStore.o -c /<>/kmer-0~20150903+r2013/libseq/seqStore.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libseq/seqStore.H:4, from /<>/kmer-0~20150903+r2013/libseq/seqStore.C:2: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libseq/seqStore.H:4, from /<>/kmer-0~20150903+r2013/libseq/seqStore.C:2: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libseq/seqStore.H:4, from /<>/kmer-0~20150903+r2013/libseq/seqStore.C:2: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libseq/seqStore.H:4, from /<>/kmer-0~20150903+r2013/libseq/seqStore.C:2: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libseq/seqStore.C:129:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStore::getSequence(full)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStore.C:129:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStore::getSequence(full)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStore.C:197:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStore::getSequence(part)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStore.C:197:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStore::getSequence(part)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStore.C:203:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStore::getSequence(part)-- for iid "uint32FMT"; invalid bgn="uint32FMT" end="uint32FMT"; seqLen="uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStore.C:203:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStore::getSequence(part)-- for iid "uint32FMT"; invalid bgn="uint32FMT" end="uint32FMT"; seqLen="uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStore.C:203:96: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStore::getSequence(part)-- for iid "uint32FMT"; invalid bgn="uint32FMT" end="uint32FMT"; seqLen="uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStore.C:203:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStore::getSequence(part)-- for iid "uint32FMT"; invalid bgn="uint32FMT" end="uint32FMT"; seqLen="uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStore.C:463:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "constructSeqStore()-- sequence %s too long, must be shorter than "uint64FMT" Gbp.\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStore.C:467:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "constructSeqStore()-- too many sequences, must be fewer than "uint64FMT".\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStore.C:620:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "constructSeqStore()-- seqStore '%s' constructed ("uint32FMT" sequences, "uint64FMT" ACGT letters, "uint32FMT" ACGT blocks, "uint32FMT" GAP blocks).\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStore.C:620:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "constructSeqStore()-- seqStore '%s' constructed ("uint32FMT" sequences, "uint64FMT" ACGT letters, "uint32FMT" ACGT blocks, "uint32FMT" GAP blocks).\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStore.C:620:102: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "constructSeqStore()-- seqStore '%s' constructed ("uint32FMT" sequences, "uint64FMT" ACGT letters, "uint32FMT" ACGT blocks, "uint32FMT" GAP blocks).\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStore.C:620:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "constructSeqStore()-- seqStore '%s' constructed ("uint32FMT" sequences, "uint64FMT" ACGT letters, "uint32FMT" ACGT blocks, "uint32FMT" GAP blocks).\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStore.C: In function ‘void constructSeqStore(char*, seqCache*)’: /<>/kmer-0~20150903+r2013/libseq/seqStore.C:410:42: warning: ‘memset’ used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args] memset(&HEAD, sizeof(seqStoreHeader), 0); ^ /<>/kmer-0~20150903+r2013/libseq/seqStore.C: In constructor ‘seqStore::seqStore(const char*)’: /<>/kmer-0~20150903+r2013/libseq/seqStore.C:21:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_header, sizeof(seqStoreHeader), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libseq/seqStore.C: In member function ‘virtual seqFile* seqStore::openFile(const char*)’: /<>/kmer-0~20150903+r2013/libseq/seqStore.C:73:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&magic1, sizeof(uint64), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libseq/seqStore.C:74:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&magic2, sizeof(uint64), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libseq/seqStore.C: In member function ‘void seqStore::loadIndex()’: /<>/kmer-0~20150903+r2013/libseq/seqStore.C:318:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_header, sizeof(seqStoreHeader), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libseq/seqStore.C:329:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread( _index, sizeof(seqStoreIndex), _header._numberOfSequences, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libseq/seqStore.C:343:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread( _block, sizeof(seqStoreBlock), _header._numberOfBlocks, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libseq/seqStore.C:347:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread( _names, sizeof(char), _header._namesLength, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libseq/sffFile.o -c /<>/kmer-0~20150903+r2013/libseq/sffFile.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libseq/sffFile.H:4, from /<>/kmer-0~20150903+r2013/libseq/sffFile.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libseq/sffFile.H:4, from /<>/kmer-0~20150903+r2013/libseq/sffFile.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libseq/sffFile.H:4, from /<>/kmer-0~20150903+r2013/libseq/sffFile.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libseq/sffFile.H:4, from /<>/kmer-0~20150903+r2013/libseq/sffFile.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libseq/seqFactory.o -c /<>/kmer-0~20150903+r2013/libseq/seqFactory.C In file included from /<>/kmer-0~20150903+r2013/libseq/seqFactory.H:4, from /<>/kmer-0~20150903+r2013/libseq/seqFactory.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libseq/fastaFile.H:4, from /<>/kmer-0~20150903+r2013/libseq/seqFactory.C:3: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libseq/fastaFile.H:4, from /<>/kmer-0~20150903+r2013/libseq/seqFactory.C:3: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libseq/fastaFile.H:4, from /<>/kmer-0~20150903+r2013/libseq/seqFactory.C:3: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libseq/seqCache.o -c /<>/kmer-0~20150903+r2013/libseq/seqCache.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libseq/seqCache.H:4, from /<>/kmer-0~20150903+r2013/libseq/seqCache.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libseq/seqCache.H:4, from /<>/kmer-0~20150903+r2013/libseq/seqCache.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libseq/seqCache.H:4, from /<>/kmer-0~20150903+r2013/libseq/seqCache.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libseq/seqCache.H:4, from /<>/kmer-0~20150903+r2013/libseq/seqCache.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libseq/seqCache.C:171:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqCache::loadAllSequences()-- Failed to load iid "uint32FMT".\n", ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libseq/seqStream.o -c /<>/kmer-0~20150903+r2013/libseq/seqStream.C In file included from /<>/kmer-0~20150903+r2013/libseq/seqFactory.H:4, from /<>/kmer-0~20150903+r2013/libseq/seqStream.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libseq/seqStream.H:4, from /<>/kmer-0~20150903+r2013/libseq/seqStream.C:2: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libseq/seqStream.H:4, from /<>/kmer-0~20150903+r2013/libseq/seqStream.C:2: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libseq/seqStream.H:4, from /<>/kmer-0~20150903+r2013/libseq/seqStream.C:2: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libseq/seqStream.C:236:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStream::setRange()-- ERROR: range ("uint64FMT","uint64FMT") too big; only "uint64FMT" positions.\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStream.C:236:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStream::setRange()-- ERROR: range ("uint64FMT","uint64FMT") too big; only "uint64FMT" positions.\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStream.C:236:82: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStream::setRange()-- ERROR: range ("uint64FMT","uint64FMT") too big; only "uint64FMT" positions.\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStream.C:268:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStream::sequenceNumberOfPosition()-- WARNING: position p="uint64FMT" too big; only "uint64FMT" positions.\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStream.C:268:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStream::sequenceNumberOfPosition()-- WARNING: position p="uint64FMT" too big; only "uint64FMT" positions.\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStream.C:340:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #1 iid="uint32FMT" bgn="uint32FMT" end="uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStream.C:340:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #1 iid="uint32FMT" bgn="uint32FMT" end="uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStream.C:340:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #1 iid="uint32FMT" bgn="uint32FMT" end="uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStream.C:386:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #2 iid="uint32FMT" bgn="uint32FMT" end="uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStream.C:386:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #2 iid="uint32FMT" bgn="uint32FMT" end="uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/seqStream.C:386:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #2 iid="uint32FMT" bgn="uint32FMT" end="uint32FMT"\n", ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libseq/merStream.o -c /<>/kmer-0~20150903+r2013/libseq/merStream.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libseq/merStream.H:4, from /<>/kmer-0~20150903+r2013/libseq/merStream.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libseq/merStream.H:4, from /<>/kmer-0~20150903+r2013/libseq/merStream.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libseq/merStream.H:4, from /<>/kmer-0~20150903+r2013/libseq/merStream.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libseq/merStream.H:4, from /<>/kmer-0~20150903+r2013/libseq/merStream.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libseq/test-seqCache.o -c /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C In file included from /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libseq/seqCache.H:4, from /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C:3: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libseq/seqCache.H:4, from /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C:3: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libseq/seqCache.H:4, from /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C:3: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C:7: /<>/kmer-0~20150903+r2013/libseq/test-correctSequence.H:33:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "generateCorrectSequence()-- Using seed "uint32FMT"\n", seed); ^ /<>/kmer-0~20150903+r2013/libseq/test-correctSequence.H:34:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); ^ /<>/kmer-0~20150903+r2013/libseq/test-correctSequence.H:34:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); ^ /<>/kmer-0~20150903+r2013/libseq/test-correctSequence.H:34:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C:15:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "testID:"uint32FMT" - empty sequence\n", testID); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C:22:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "testID:"uint32FMT" - header differs '%s' vs '%s'\n", testID, S->header(), correctSequence[sid].header); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C:26:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "testID:"uint32FMT" - header length differs "uint32FMT" vs "uint32FMT"\n", testID, S->headerLength(), correctSequence[sid].headerLength); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C:26:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "testID:"uint32FMT" - header length differs "uint32FMT" vs "uint32FMT"\n", testID, S->headerLength(), correctSequence[sid].headerLength); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C:26:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "testID:"uint32FMT" - header length differs "uint32FMT" vs "uint32FMT"\n", testID, S->headerLength(), correctSequence[sid].headerLength); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C:30:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "testID:"uint32FMT" - sequence differs\n", testID); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C:34:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "testID:"uint32FMT" - sequence length differs strlen "uint32FMT" vs "uint32FMT"\n", testID, (uint32)strlen(S->sequence()), correctSequence[sid].sequenceLength); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C:34:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "testID:"uint32FMT" - sequence length differs strlen "uint32FMT" vs "uint32FMT"\n", testID, (uint32)strlen(S->sequence()), correctSequence[sid].sequenceLength); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C:34:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "testID:"uint32FMT" - sequence length differs strlen "uint32FMT" vs "uint32FMT"\n", testID, (uint32)strlen(S->sequence()), correctSequence[sid].sequenceLength); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C:38:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "testID:"uint32FMT" - sequence length differs "uint32FMT" vs "uint32FMT"\n", testID, S->sequenceLength(), correctSequence[sid].sequenceLength); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C:38:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "testID:"uint32FMT" - sequence length differs "uint32FMT" vs "uint32FMT"\n", testID, S->sequenceLength(), correctSequence[sid].sequenceLength); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqCache.C:38:77: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "testID:"uint32FMT" - sequence length differs "uint32FMT" vs "uint32FMT"\n", testID, S->sequenceLength(), correctSequence[sid].sequenceLength); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libseq/test-seqStream.o -c /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C In file included from /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libseq/seqCache.H:4, from /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:3: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libseq/seqCache.H:4, from /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:3: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libseq/seqCache.H:4, from /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:3: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:7: /<>/kmer-0~20150903+r2013/libseq/test-correctSequence.H:33:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "generateCorrectSequence()-- Using seed "uint32FMT"\n", seed); ^ /<>/kmer-0~20150903+r2013/libseq/test-correctSequence.H:34:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); ^ /<>/kmer-0~20150903+r2013/libseq/test-correctSequence.H:34:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); ^ /<>/kmer-0~20150903+r2013/libseq/test-correctSequence.H:34:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:17:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "testIndexing()-- numSeq="uint32FMT" sep=%c sepLen="uint32FMT"\n", numSeq, sep, sepLen); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:17:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "testIndexing()-- numSeq="uint32FMT" sep=%c sepLen="uint32FMT"\n", numSeq, sep, sepLen); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:55:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "lengthOf "uint32FMT" returned "uint32FMT", not correct "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:55:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "lengthOf "uint32FMT" returned "uint32FMT", not correct "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:55:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "lengthOf "uint32FMT" returned "uint32FMT", not correct "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:60:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "startOf "uint32FMT" returned "uint64FMT", not correct "uint64FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:60:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "startOf "uint32FMT" returned "uint64FMT", not correct "uint64FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:60:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "startOf "uint32FMT" returned "uint64FMT", not correct "uint64FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:65:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "IIDOf "uint32FMT" returned "uint32FMT", not correct "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:65:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "IIDOf "uint32FMT" returned "uint32FMT", not correct "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:65:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "IIDOf "uint32FMT" returned "uint32FMT", not correct "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:74:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sequenceNumberOfPosition "uint64FMT" returned "uint32FMT", not correct "uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:74:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sequenceNumberOfPosition "uint64FMT" returned "uint32FMT", not correct "uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:74:82: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sequenceNumberOfPosition "uint64FMT" returned "uint32FMT", not correct "uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:95:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "wrong separator at sep "uint32FMT" got %d expected %d\n", x, s, sep); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:124:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- letter wrong got'%c'\n", sp, si, st, ch, chainSeq[sib]); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:124:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- letter wrong got'%c'\n", sp, si, st, ch, chainSeq[sib]); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:124:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- letter wrong got'%c'\n", sp, si, st, ch, chainSeq[sib]); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:128:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqPos wrong got "uint32FMT"\n", sp, si, st, ch, chainSeqPos[sib]); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:128:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqPos wrong got "uint32FMT"\n", sp, si, st, ch, chainSeqPos[sib]); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:128:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqPos wrong got "uint32FMT"\n", sp, si, st, ch, chainSeqPos[sib]); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:128:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqPos wrong got "uint32FMT"\n", sp, si, st, ch, chainSeqPos[sib]); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:132:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqIID wrong got"uint32FMT"\n", sp, si, st, ch, chainSeqIID[sib]); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:132:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqIID wrong got"uint32FMT"\n", sp, si, st, ch, chainSeqIID[sib]); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:132:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqIID wrong got"uint32FMT"\n", sp, si, st, ch, chainSeqIID[sib]); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:132:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqIID wrong got"uint32FMT"\n", sp, si, st, ch, chainSeqIID[sib]); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:136:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- strPos wrong got "uint64FMT"\n", sp, si, st, ch, chainStrPos[sib]); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:136:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- strPos wrong got "uint64FMT"\n", sp, si, st, ch, chainStrPos[sib]); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:136:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- strPos wrong got "uint64FMT"\n", sp, si, st, ch, chainStrPos[sib]); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:136:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- strPos wrong got "uint64FMT"\n", sp, si, st, ch, chainStrPos[sib]); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:145:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "iterated length wrong; sib="uint32FMT" sie="uint32FMT"\n", sib, sie); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:145:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "iterated length wrong; sib="uint32FMT" sie="uint32FMT"\n", sib, sie); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:159:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "testChaining()-- numSeq="uint32FMT" sep=%c sepLen="uint32FMT"\n", numSeq, sep, sepLen); ^ /<>/kmer-0~20150903+r2013/libseq/test-seqStream.C:159:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "testChaining()-- numSeq="uint32FMT" sep=%c sepLen="uint32FMT"\n", numSeq, sep, sepLen); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libseq/test-merStream.o -c /<>/kmer-0~20150903+r2013/libseq/test-merStream.C In file included from /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libseq/seqCache.H:4, from /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:3: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libseq/seqCache.H:4, from /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:3: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libseq/seqCache.H:4, from /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:3: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:7: /<>/kmer-0~20150903+r2013/libseq/test-correctSequence.H:33:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "generateCorrectSequence()-- Using seed "uint32FMT"\n", seed); ^ /<>/kmer-0~20150903+r2013/libseq/test-correctSequence.H:34:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); ^ /<>/kmer-0~20150903+r2013/libseq/test-correctSequence.H:34:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); ^ /<>/kmer-0~20150903+r2013/libseq/test-correctSequence.H:34:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); ^ /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:11:2: warning: #warning HOW DO WE TEST IF WE GET ALL THE MERS? [-Wcpp] #warning HOW DO WE TEST IF WE GET ALL THE MERS? ^~~~~~~ /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:33:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "MS pos="uint32FMT" posInSeq="uint64FMT" posInStr="uint64FMT" seqNum="uint64FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:33:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "MS pos="uint32FMT" posInSeq="uint64FMT" posInStr="uint64FMT" seqNum="uint64FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:33:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "MS pos="uint32FMT" posInSeq="uint64FMT" posInStr="uint64FMT" seqNum="uint64FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:33:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "MS pos="uint32FMT" posInSeq="uint64FMT" posInStr="uint64FMT" seqNum="uint64FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:39:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "MS pos="uint32FMT" failed '%s' != '%s'.\n", pos, testmer, seq + pos); ^ /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:124:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "mer stream position out of range; at "uint32FMT", range "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:124:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "mer stream position out of range; at "uint32FMT", range "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:124:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "mer stream position out of range; at "uint32FMT", range "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libseq/test-merStream.C: In function ‘int main(int, char**)’: /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:223:64: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] testMerStreamSimple(MS, 20, "GGGTCAACTCCGCCCGCACTCTAGC", SP); ^ /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:225:64: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] testMerStreamSimple(MS, 20, "GGGTCAACTCCGCCCGCACTCTAGC", SP); ^ /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:228:64: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] testMerStreamSimple(MS, 20, "GGGTCAACTCCGCCCGCACTCTAGC", SP); ^ /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:243:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] testMerStreamSimple(MS, 20, "GATCACTCGCGCACTCTAGCA", SP); ^ /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:245:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] testMerStreamSimple(MS, 20, "GATCACTCGCGCACTCTAGCA", SP); ^ /<>/kmer-0~20150903+r2013/libseq/test-merStream.C:248:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] testMerStreamSimple(MS, 20, "GATCACTCGCGCACTCTAGCA", SP); ^ rm -f /<>/kmer-0~20150903+r2013/libseq/libseq.a && ar ruvs /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libseq/fastaFile.o /<>/kmer-0~20150903+r2013/libseq/fastaStdin.o /<>/kmer-0~20150903+r2013/libseq/fastqFile.o /<>/kmer-0~20150903+r2013/libseq/fastqStdin.o /<>/kmer-0~20150903+r2013/libseq/seqStore.o /<>/kmer-0~20150903+r2013/libseq/sffFile.o /<>/kmer-0~20150903+r2013/libseq/seqFactory.o /<>/kmer-0~20150903+r2013/libseq/seqCache.o /<>/kmer-0~20150903+r2013/libseq/seqStream.o /<>/kmer-0~20150903+r2013/libseq/merStream.o /<>/kmer-0~20150903+r2013/libseq/test-seqCache.o /<>/kmer-0~20150903+r2013/libseq/test-seqStream.o /<>/kmer-0~20150903+r2013/libseq/test-merStream.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/kmer-0~20150903+r2013/libseq/libseq.a a - /<>/kmer-0~20150903+r2013/libseq/fastaFile.o a - /<>/kmer-0~20150903+r2013/libseq/fastaStdin.o a - /<>/kmer-0~20150903+r2013/libseq/fastqFile.o a - /<>/kmer-0~20150903+r2013/libseq/fastqStdin.o a - /<>/kmer-0~20150903+r2013/libseq/seqStore.o a - /<>/kmer-0~20150903+r2013/libseq/sffFile.o a - /<>/kmer-0~20150903+r2013/libseq/seqFactory.o a - /<>/kmer-0~20150903+r2013/libseq/seqCache.o a - /<>/kmer-0~20150903+r2013/libseq/seqStream.o a - /<>/kmer-0~20150903+r2013/libseq/merStream.o a - /<>/kmer-0~20150903+r2013/libseq/test-seqCache.o a - /<>/kmer-0~20150903+r2013/libseq/test-seqStream.o a - /<>/kmer-0~20150903+r2013/libseq/test-merStream.o gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libbio/alphabet.o -c /<>/kmer-0~20150903+r2013/libbio/alphabet.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libbio/alphabet-acgtspace.o -c /<>/kmer-0~20150903+r2013/libbio/alphabet-acgtspace.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libbio/alphabet-colorspace.o -c /<>/kmer-0~20150903+r2013/libbio/alphabet-colorspace.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libbio/halign.o -c /<>/kmer-0~20150903+r2013/libbio/halign.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libbio/reversecomplement.o -c /<>/kmer-0~20150903+r2013/libbio/reversecomplement.c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libbio/kmer.o -c /<>/kmer-0~20150903+r2013/libbio/kmer.C In file included from /<>/kmer-0~20150903+r2013/libbio/kmer.H:28, from /<>/kmer-0~20150903+r2013/libbio/kmer.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/kmer.H:29, from /<>/kmer-0~20150903+r2013/libbio/kmer.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/kmer.H:29, from /<>/kmer-0~20150903+r2013/libbio/kmer.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/kmer.H:29, from /<>/kmer-0~20150903+r2013/libbio/kmer.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ rm -f /<>/kmer-0~20150903+r2013/libbio/libbio.a && ar ruvs /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libbio/alphabet.o /<>/kmer-0~20150903+r2013/libbio/alphabet-acgtspace.o /<>/kmer-0~20150903+r2013/libbio/alphabet-colorspace.o /<>/kmer-0~20150903+r2013/libbio/halign.o /<>/kmer-0~20150903+r2013/libbio/reversecomplement.o /<>/kmer-0~20150903+r2013/libbio/kmer.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/kmer-0~20150903+r2013/libbio/libbio.a a - /<>/kmer-0~20150903+r2013/libbio/alphabet.o a - /<>/kmer-0~20150903+r2013/libbio/alphabet-acgtspace.o a - /<>/kmer-0~20150903+r2013/libbio/alphabet-colorspace.o a - /<>/kmer-0~20150903+r2013/libbio/halign.o a - /<>/kmer-0~20150903+r2013/libbio/reversecomplement.o a - /<>/kmer-0~20150903+r2013/libbio/kmer.o gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/file.o -c /<>/kmer-0~20150903+r2013/libutil/file.c /<>/kmer-0~20150903+r2013/libutil/file.c: In function ‘openFile’: /<>/kmer-0~20150903+r2013/libutil/file.c:382:9: warning: variable ‘isRW’ set but not used [-Wunused-but-set-variable] int isRW = 1; ^~~~ gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/md5.o -c /<>/kmer-0~20150903+r2013/libutil/md5.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/palloc.o -c /<>/kmer-0~20150903+r2013/libutil/palloc.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/qsort_mt.o -c /<>/kmer-0~20150903+r2013/libutil/qsort_mt.c /<>/kmer-0~20150903+r2013/libutil/qsort_mt.c: In function ‘qsort_algo’: /<>/kmer-0~20150903+r2013/libutil/qsort_mt.c:264:13: warning: variable ‘id’ set but not used [-Wunused-but-set-variable] pthread_t id; ^~ /<>/kmer-0~20150903+r2013/libutil/qsort_mt.c: In function ‘qsort_thread’: /<>/kmer-0~20150903+r2013/libutil/qsort_mt.c:370:13: warning: variable ‘id’ set but not used [-Wunused-but-set-variable] pthread_t id; ^~ gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/util.o -c /<>/kmer-0~20150903+r2013/libutil/util.c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/bigQueue.o -c /<>/kmer-0~20150903+r2013/libutil/bigQueue.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libutil/bigQueue.H:4, from /<>/kmer-0~20150903+r2013/libutil/bigQueue.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libutil/bigQueue.H:4, from /<>/kmer-0~20150903+r2013/libutil/bigQueue.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libutil/bigQueue.H:4, from /<>/kmer-0~20150903+r2013/libutil/bigQueue.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libutil/bigQueue.H:4, from /<>/kmer-0~20150903+r2013/libutil/bigQueue.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libutil/bigQueue.C: In member function ‘void bigQueue::mergeTemporaryFiles()’: /<>/kmer-0~20150903+r2013/libutil/bigQueue.C:204:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(thing, _objectSize, 1, _temporaryFiles[i]); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/bigQueue.C:255:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(thing, _objectSize, 1, _temporaryFiles[fileid]); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/bigQueue.C: In member function ‘bool bigQueue::next()’: /<>/kmer-0~20150903+r2013/libutil/bigQueue.C:302:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(_thingBuffer, _objectSize, 1, _temporaryFiles[0]); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.o -c /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.C:8: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.C:8: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.C:8: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.C:8: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.C:35:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "bitPackedArray::get()-- element index "uint64FMT" is out of range, only "uint64FMT" elements.\n", ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.C:35:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "bitPackedArray::get()-- element index "uint64FMT" is out of range, only "uint64FMT" elements.\n", ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.o -c /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.C:168:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " at position "uint64HEX"\n", file_offset); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.C:367:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "bitPackedFile::seekNormal() '%s' seek to pos="uint64FMT" failed: %s\n", ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.C:376:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "bitPackedFile::seekNormal() '%s' read of "uint64FMT" bytes failed': %s\n", ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.C: In constructor ‘bitPackedFile::bitPackedFile(const char*, uint64, bool)’: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.C:109:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, t, sizeof(char) * 16); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.C:110:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, &at, sizeof(uint64)); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.C:111:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, &bt, sizeof(uint64)); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.C: In member function ‘void bitPackedFile::flushDirty()’: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.C:232:8: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, _bfr, sizeof(uint64) * _bfrmax); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/fibonacciNumbers.o -c /<>/kmer-0~20150903+r2013/libutil/fibonacciNumbers.C In file included from /<>/kmer-0~20150903+r2013/libutil/fibonacciNumbers.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/readBuffer.o -c /<>/kmer-0~20150903+r2013/libutil/readBuffer.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libutil/readBuffer.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libutil/readBuffer.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libutil/readBuffer.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libutil/readBuffer.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libutil/readBuffer.C:132:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "readBuffer::fillBuffer()-- only read "uint64FMT" bytes, couldn't read "uint64FMT" bytes from '%s': %s\n", ^ /<>/kmer-0~20150903+r2013/libutil/readBuffer.C:132:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "readBuffer::fillBuffer()-- only read "uint64FMT" bytes, couldn't read "uint64FMT" bytes from '%s': %s\n", ^ /<>/kmer-0~20150903+r2013/libutil/readBuffer.C:165:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "readBuffer()-- '%s' couldn't seek to position "int64FMT": %s\n", ^ /<>/kmer-0~20150903+r2013/libutil/readBuffer.C:228:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "readBuffer()-- couldn't read "uint64FMT" bytes from '%s': n%s\n", ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/recordFile.o -c /<>/kmer-0~20150903+r2013/libutil/recordFile.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libutil/recordFile.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libutil/recordFile.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libutil/recordFile.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libutil/recordFile.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:227:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "recordFile::seek() '%s' seek to record="uint64FMT" at fileposition="uint64FMT" failed: %s\n", ^ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:227:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "recordFile::seek() '%s' seek to record="uint64FMT" at fileposition="uint64FMT" failed: %s\n", ^ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:233:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "recordFile::seek() '%s' read of "uint64FMT" bytes failed at record "uint64FMT", fileposition "uint64FMT"': %s\n", ^ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:233:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "recordFile::seek() '%s' read of "uint64FMT" bytes failed at record "uint64FMT", fileposition "uint64FMT"': %s\n", ^ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:233:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "recordFile::seek() '%s' read of "uint64FMT" bytes failed at record "uint64FMT", fileposition "uint64FMT"': %s\n", ^ /<>/kmer-0~20150903+r2013/libutil/recordFile.C: In constructor ‘recordFile::recordFile(const char*, uint32, uint32, char)’: /<>/kmer-0~20150903+r2013/libutil/recordFile.C:68:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, &recordFileMagic1, sizeof(uint64)); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:69:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, &recordFileMagic2, sizeof(uint64)); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:70:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, &_numRecords, sizeof(uint64)); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:71:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, &_recordSize, sizeof(uint32)); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:72:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, &_headerSize, sizeof(uint32)); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:73:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, _header, sizeof(char) * _headerSize); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:112:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] read(_file, &m1, sizeof(uint64)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:113:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] read(_file, &m2, sizeof(uint64)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:114:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] read(_file, &_numRecords, sizeof(uint64)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:115:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] read(_file, &_recordSize, sizeof(uint32)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:116:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] read(_file, &_headerSize, sizeof(uint32)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:117:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] read(_file, _header, sizeof(char) * _headerSize); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C: In destructor ‘recordFile::~recordFile()’: /<>/kmer-0~20150903+r2013/libutil/recordFile.C:151:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, &recordFileMagic1, sizeof(uint64)); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:152:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, &recordFileMagic2, sizeof(uint64)); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:153:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, &_numRecords, sizeof(uint64)); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:154:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, &_recordSize, sizeof(uint32)); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:155:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, &_headerSize, sizeof(uint32)); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C:156:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, _header, sizeof(char) * _headerSize); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C: In member function ‘void recordFile::flushDirty()’: /<>/kmer-0~20150903+r2013/libutil/recordFile.C:197:8: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, _bfr, _recordSize * _rec); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libutil/recordFile.C: In member function ‘void recordFile::seek(uint64, bool)’: /<>/kmer-0~20150903+r2013/libutil/recordFile.C:231:7: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] read(_file, _bfr, _recordSize * _bfrmax); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/speedCounter.o -c /<>/kmer-0~20150903+r2013/libutil/speedCounter.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libutil/speedCounter.C:4: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libutil/speedCounter.C:4: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libutil/speedCounter.C:4: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libutil/speedCounter.C:4: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/sweatShop.o -c /<>/kmer-0~20150903+r2013/libutil/sweatShop.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libutil/sweatShop.H:7, from /<>/kmer-0~20150903+r2013/libutil/sweatShop.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libutil/sweatShop.H:7, from /<>/kmer-0~20150903+r2013/libutil/sweatShop.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libutil/sweatShop.H:7, from /<>/kmer-0~20150903+r2013/libutil/sweatShop.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libutil/sweatShop.H:7, from /<>/kmer-0~20150903+r2013/libutil/sweatShop.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libutil/sweatShop.C:127:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sweatShop::setThreadData()-- worker ID "uint32FMT" more than number of workers="uint32FMT"\n", t, _numberOfWorkers), exit(1); ^ /<>/kmer-0~20150903+r2013/libutil/sweatShop.C:127:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sweatShop::setThreadData()-- worker ID "uint32FMT" more than number of workers="uint32FMT"\n", t, _numberOfWorkers), exit(1); ^ /<>/kmer-0~20150903+r2013/libutil/sweatShop.C:390:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" loaded; "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" written; "uint64FMTW(8)" queued for output)\r", ^ /<>/kmer-0~20150903+r2013/libutil/sweatShop.C:390:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" loaded; "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" written; "uint64FMTW(8)" queued for output)\r", ^ /<>/kmer-0~20150903+r2013/libutil/sweatShop.C:390:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" loaded; "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" written; "uint64FMTW(8)" queued for output)\r", ^ /<>/kmer-0~20150903+r2013/libutil/sweatShop.C:390:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" loaded; "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" written; "uint64FMTW(8)" queued for output)\r", ^ /<>/kmer-0~20150903+r2013/libutil/sweatShop.C:390:135: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" loaded; "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" written; "uint64FMTW(8)" queued for output)\r", ^ /<>/kmer-0~20150903+r2013/libutil/sweatShop.C:425:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" queued for output)\n", ^ /<>/kmer-0~20150903+r2013/libutil/sweatShop.C:425:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" queued for output)\n", ^ /<>/kmer-0~20150903+r2013/libutil/sweatShop.C:425:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" queued for output)\n", ^ /<>/kmer-0~20150903+r2013/libutil/sweatShop.C:560:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sweatShop::run()-- Failed to launch worker thread "uint32FMT": %s.\n", i, strerror(err)), exit(1); ^ /<>/kmer-0~20150903+r2013/libutil/sweatShop.C:580:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sweatShop::run()-- Failed to join worker thread "uint32FMT": %s.\n", i, strerror(err)), exit(1); ^ gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/kazlib/dict.o -c /<>/kmer-0~20150903+r2013/libutil/kazlib/dict.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/kazlib/except.o -c /<>/kmer-0~20150903+r2013/libutil/kazlib/except.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/kazlib/hash.o -c /<>/kmer-0~20150903+r2013/libutil/kazlib/hash.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/kazlib/list.o -c /<>/kmer-0~20150903+r2013/libutil/kazlib/list.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/kazlib/sfx.o -c /<>/kmer-0~20150903+r2013/libutil/kazlib/sfx.c rm -f /<>/kmer-0~20150903+r2013/libutil/libutil.a && ar ruvs /<>/kmer-0~20150903+r2013/libutil/libutil.a /<>/kmer-0~20150903+r2013/libutil/file.o /<>/kmer-0~20150903+r2013/libutil/md5.o /<>/kmer-0~20150903+r2013/libutil/palloc.o /<>/kmer-0~20150903+r2013/libutil/qsort_mt.o /<>/kmer-0~20150903+r2013/libutil/util.o /<>/kmer-0~20150903+r2013/libutil/bigQueue.o /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.o /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.o /<>/kmer-0~20150903+r2013/libutil/fibonacciNumbers.o /<>/kmer-0~20150903+r2013/libutil/readBuffer.o /<>/kmer-0~20150903+r2013/libutil/recordFile.o /<>/kmer-0~20150903+r2013/libutil/speedCounter.o /<>/kmer-0~20150903+r2013/libutil/sweatShop.o /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar.o /<>/kmer-0~20150903+r2013/libutil/kazlib/dict.o /<>/kmer-0~20150903+r2013/libutil/kazlib/except.o /<>/kmer-0~20150903+r2013/libutil/kazlib/hash.o /<>/kmer-0~20150903+r2013/libutil/kazlib/list.o /<>/kmer-0~20150903+r2013/libutil/kazlib/sfx.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/kmer-0~20150903+r2013/libutil/libutil.a a - /<>/kmer-0~20150903+r2013/libutil/file.o a - /<>/kmer-0~20150903+r2013/libutil/md5.o a - /<>/kmer-0~20150903+r2013/libutil/palloc.o a - /<>/kmer-0~20150903+r2013/libutil/qsort_mt.o a - /<>/kmer-0~20150903+r2013/libutil/util.o a - /<>/kmer-0~20150903+r2013/libutil/bigQueue.o a - /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.o a - /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.o a - /<>/kmer-0~20150903+r2013/libutil/fibonacciNumbers.o a - /<>/kmer-0~20150903+r2013/libutil/readBuffer.o a - /<>/kmer-0~20150903+r2013/libutil/recordFile.o a - /<>/kmer-0~20150903+r2013/libutil/speedCounter.o a - /<>/kmer-0~20150903+r2013/libutil/sweatShop.o a - /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar.o a - /<>/kmer-0~20150903+r2013/libutil/kazlib/dict.o a - /<>/kmer-0~20150903+r2013/libutil/kazlib/except.o a - /<>/kmer-0~20150903+r2013/libutil/kazlib/hash.o a - /<>/kmer-0~20150903+r2013/libutil/kazlib/list.o a - /<>/kmer-0~20150903+r2013/libutil/kazlib/sfx.o g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ESTmapper/terminate ESTmapper/terminate.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacFeature.o -c atac-driver/libatac/atacFeature.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/libatac/atacFeature.C:23: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atacFeature.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atacFeature.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atacFeature.C:23: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacFeature.C:24: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from atac-driver/libatac/atac.H:34, from atac-driver/libatac/atacFeature.C:24: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from atac-driver/libatac/atac.H:37, from atac-driver/libatac/atacFeature.C:24: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from atac-driver/libatac/atac.H:37, from atac-driver/libatac/atacFeature.C:24: atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/atacFeature.C:109:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Feature longer than sequence (by "uint32FMT"bp): seqLen="uint32FMTW(8)" %s\n", ^ atac-driver/libatac/atacFeature.C:109:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Feature longer than sequence (by "uint32FMT"bp): seqLen="uint32FMTW(8)" %s\n", ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacFeatureList.o -c atac-driver/libatac/atacFeatureList.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/libatac/atacFeatureList.C:23: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atacFeatureList.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atacFeatureList.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atacFeatureList.C:23: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacFeatureList.C:24: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from atac-driver/libatac/atac.H:34, from atac-driver/libatac/atacFeatureList.C:24: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from atac-driver/libatac/atac.H:37, from atac-driver/libatac/atacFeatureList.C:24: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from atac-driver/libatac/atac.H:37, from atac-driver/libatac/atacFeatureList.C:24: atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/atacFeatureList.C: In member function ‘void atacFeatureList::add(atacFeature&)’: atac-driver/libatac/atacFeatureList.C:50:52: warning: operation on ‘((atacFeatureList*)this)->atacFeatureList::_featuresLen’ may be undefined [-Wsequence-point] _features[_featuresLen].featureiid = _featuresLen++; ~~~~~~~~~~~~^~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacFile.o -c atac-driver/libatac/atacFile.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/libatac/atacFile.C:23: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atacFile.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atacFile.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atacFile.C:23: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacFile.C:24: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from atac-driver/libatac/atac.H:34, from atac-driver/libatac/atacFile.C:24: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from atac-driver/libatac/atac.H:37, from atac-driver/libatac/atacFile.C:24: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from atac-driver/libatac/atac.H:37, from atac-driver/libatac/atacFile.C:24: atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/atacFile.C: In member function ‘atacMatch* atacFileStream::nextMatch(char)’: atac-driver/libatac/atacFile.C:76:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(_inLine, 1024, _inFile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/libatac/atacFile.C: In member function ‘atacFeature* atacFileStream::nextFeature(char*)’: atac-driver/libatac/atacFile.C:105:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(_inLine, 1024, _inFile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/libatac/atacFile.C: In constructor ‘atacFile::atacFile(const char*)’: atac-driver/libatac/atacFile.C:171:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(inLine, 1024, inFile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ atac-driver/libatac/atacFile.C: In member function ‘void atacFileBase::readHeader(char*, FILE*)’: atac-driver/libatac/atacFile.C:206:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(inLine, 1024, in); ~~~~~^~~~~~~~~~~~~~~~~~ atac-driver/libatac/atacFile.C:245:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(inLine, 1024, in); ~~~~~^~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacFileStreamMerge.o -c atac-driver/libatac/atacFileStreamMerge.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/libatac/atacFileStreamMerge.C:23: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atacFileStreamMerge.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atacFileStreamMerge.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atacFileStreamMerge.C:23: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacFileStreamMerge.C:24: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from atac-driver/libatac/atac.H:34, from atac-driver/libatac/atacFileStreamMerge.C:24: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from atac-driver/libatac/atac.H:37, from atac-driver/libatac/atacFileStreamMerge.C:24: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from atac-driver/libatac/atac.H:37, from atac-driver/libatac/atacFileStreamMerge.C:24: atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/atacFileStreamMerge.C: In member function ‘void atacFileStreamMerge::addFile(const char*)’: atac-driver/libatac/atacFileStreamMerge.C:86:47: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘class afsm’; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(F, _files, sizeof(afsm) * _filesLen); ^ atac-driver/libatac/atacFileStreamMerge.C:27:7: note: ‘class afsm’ declared here class afsm { ^~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacMatch.o -c atac-driver/libatac/atacMatch.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/libatac/atac.H:26, from atac-driver/libatac/atacMatch.C:19: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atac.H:26, from atac-driver/libatac/atacMatch.C:19: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atac.H:26, from atac-driver/libatac/atacMatch.C:19: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atac.H:26, from atac-driver/libatac/atacMatch.C:19: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacMatch.C:19: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from atac-driver/libatac/atac.H:34, from atac-driver/libatac/atacMatch.C:19: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from atac-driver/libatac/atac.H:37, from atac-driver/libatac/atacMatch.C:19: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from atac-driver/libatac/atac.H:37, from atac-driver/libatac/atacMatch.C:19: atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/atacMatch.C:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Match longer than sequence (by "uint32FMT"bp) in 1: seqLen="uint32FMTW(8)" %s\n", ^ atac-driver/libatac/atacMatch.C:131:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Match longer than sequence (by "uint32FMT"bp) in 1: seqLen="uint32FMTW(8)" %s\n", ^ atac-driver/libatac/atacMatch.C:139:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Match longer than sequence (by "uint32FMT"bp) in 2: seqLen="uint32FMTW(8)" %s\n", ^ atac-driver/libatac/atacMatch.C:139:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Match longer than sequence (by "uint32FMT"bp) in 2: seqLen="uint32FMTW(8)" %s\n", ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacMatchList.o -c atac-driver/libatac/atacMatchList.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/libatac/atacMatchList.C:23: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atacMatchList.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atacMatchList.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atacMatchList.C:23: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacMatchList.C:24: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from atac-driver/libatac/atac.H:34, from atac-driver/libatac/atacMatchList.C:24: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from atac-driver/libatac/atac.H:37, from atac-driver/libatac/atacMatchList.C:24: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from atac-driver/libatac/atac.H:37, from atac-driver/libatac/atacMatchList.C:24: atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/atacMatchList.C: In member function ‘void atacMatchList::add(atacMatch&)’: atac-driver/libatac/atacMatchList.C:50:47: warning: operation on ‘((atacMatchList*)this)->atacMatchList::_matchesLen’ may be undefined [-Wsequence-point] _matches[_matchesLen].matchiid = _matchesLen++; ~~~~~~~~~~~^~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacMatchOrder.o -c atac-driver/libatac/atacMatchOrder.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/libatac/atacMatchOrder.C:23: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atacMatchOrder.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atacMatchOrder.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/libatac/atacMatchOrder.C:23: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacMatchOrder.C:24: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from atac-driver/libatac/atac.H:34, from atac-driver/libatac/atacMatchOrder.C:24: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from atac-driver/libatac/atac.H:37, from atac-driver/libatac/atacMatchOrder.C:24: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from atac-driver/libatac/atac.H:37, from atac-driver/libatac/atacMatchOrder.C:24: atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/libatac/atacMatchOrder.C:38:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(n.matchuid, "merge"uint32FMT, mergeuid); ^ rm -f atac-driver/libatac/libatac.a && ar ruvs atac-driver/libatac/libatac.a atac-driver/libatac/atacFeature.o atac-driver/libatac/atacFeatureList.o atac-driver/libatac/atacFile.o atac-driver/libatac/atacFileStreamMerge.o atac-driver/libatac/atacMatch.o atac-driver/libatac/atacMatchList.o atac-driver/libatac/atacMatchOrder.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating atac-driver/libatac/libatac.a a - atac-driver/libatac/atacFeature.o a - atac-driver/libatac/atacFeatureList.o a - atac-driver/libatac/atacFile.o a - atac-driver/libatac/atacFileStreamMerge.o a - atac-driver/libatac/atacMatch.o a - atac-driver/libatac/atacMatchList.o a - atac-driver/libatac/atacMatchOrder.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap.o -c atac-driver/alignOverlap/overlap.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap.C:19: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap.C:19: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap.C:19: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap.C:19: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ In file included from atac-driver/alignOverlap/overlap.H:41, from atac-driver/alignOverlap/overlap.C:19: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ In file included from atac-driver/alignOverlap/overlap.H:45, from atac-driver/alignOverlap/overlap.C:19: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); ^ atac-driver/alignOverlap/overlap.C:123:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "unmapped: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.unmapped.getSum(), statsB.unmapped.getSum()); ^ atac-driver/alignOverlap/overlap.C:123:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "unmapped: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.unmapped.getSum(), statsB.unmapped.getSum()); ^ atac-driver/alignOverlap/overlap.C:124:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "unique mapping 1: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.map1unique.getSum(), statsB.map1unique.getSum()); ^ atac-driver/alignOverlap/overlap.C:124:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "unique mapping 1: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.map1unique.getSum(), statsB.map1unique.getSum()); ^ atac-driver/alignOverlap/overlap.C:125:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "unique mapping 2: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.map2unique.getSum(), statsB.map2unique.getSum()); ^ atac-driver/alignOverlap/overlap.C:125:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "unique mapping 2: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.map2unique.getSum(), statsB.map2unique.getSum()); ^ atac-driver/alignOverlap/overlap.C:126:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "different: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.different.getSum(), statsB.different.getSum()); ^ atac-driver/alignOverlap/overlap.C:126:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "different: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.different.getSum(), statsB.different.getSum()); ^ atac-driver/alignOverlap/overlap.C:127:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "wild diff: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.wilddiff.getSum(), statsB.wilddiff.getSum()); ^ atac-driver/alignOverlap/overlap.C:127:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "wild diff: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.wilddiff.getSum(), statsB.wilddiff.getSum()); ^ atac-driver/alignOverlap/overlap.C:128:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "same: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.same.getSum(), statsB.same.getSum()); ^ atac-driver/alignOverlap/overlap.C:128:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "same: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.same.getSum(), statsB.same.getSum()); ^ atac-driver/alignOverlap/overlap.C:129:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "inconsistent: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.inconsistent.getSum(), statsB.inconsistent.getSum()); ^ atac-driver/alignOverlap/overlap.C:129:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "inconsistent: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.inconsistent.getSum(), statsB.inconsistent.getSum()); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-find.o -c atac-driver/alignOverlap/overlap-find.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-find.C:19: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-find.C:19: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-find.C:19: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-find.C:19: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-find.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-find.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-find.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-find.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ In file included from atac-driver/alignOverlap/overlap.H:41, from atac-driver/alignOverlap/overlap-find.C:19: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ In file included from atac-driver/alignOverlap/overlap.H:45, from atac-driver/alignOverlap/overlap-find.C:19: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); ^ atac-driver/alignOverlap/overlap-find.C:45:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "isolated Unique: map1: "uint32FMT" map2: "uint32FMT"\n", sumA, sumB); ^ atac-driver/alignOverlap/overlap-find.C:45:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "isolated Unique: map1: "uint32FMT" map2: "uint32FMT"\n", sumA, sumB); ^ atac-driver/alignOverlap/overlap-find.C:59:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "got invalid type; "uint32FMT" -- %c\n", type, (char)type), exit(1); ^ atac-driver/alignOverlap/overlap-find.C:91:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s: "uint32FMT" len:"uint32FMT"\n", msg, count, len); ^ atac-driver/alignOverlap/overlap-find.C:91:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s: "uint32FMT" len:"uint32FMT"\n", msg, count, len); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-matchTree.o -c atac-driver/alignOverlap/overlap-matchTree.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-matchTree.C:19: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-matchTree.C:19: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-matchTree.C:19: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-matchTree.C:19: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-matchTree.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-matchTree.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-matchTree.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-matchTree.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ In file included from atac-driver/alignOverlap/overlap.H:41, from atac-driver/alignOverlap/overlap-matchTree.C:19: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ In file included from atac-driver/alignOverlap/overlap.H:45, from atac-driver/alignOverlap/overlap-matchTree.C:19: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-printAnno.o -c atac-driver/alignOverlap/overlap-printAnno.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-printAnno.C:19: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-printAnno.C:19: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-printAnno.C:19: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-printAnno.C:19: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-printAnno.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-printAnno.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-printAnno.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-printAnno.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ In file included from atac-driver/alignOverlap/overlap.H:41, from atac-driver/alignOverlap/overlap-printAnno.C:19: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ In file included from atac-driver/alignOverlap/overlap.H:45, from atac-driver/alignOverlap/overlap-printAnno.C:19: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); ^ atac-driver/alignOverlap/overlap-printAnno.C:46:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%c "uint32FMTW(4)":"uint32FMTW(09)"-"uint32FMTW(09)"["uint32FMTW(6)"] ", ^ atac-driver/alignOverlap/overlap-printAnno.C:46:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%c "uint32FMTW(4)":"uint32FMTW(09)"-"uint32FMTW(09)"["uint32FMTW(6)"] ", ^ atac-driver/alignOverlap/overlap-printAnno.C:46:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%c "uint32FMTW(4)":"uint32FMTW(09)"-"uint32FMTW(09)"["uint32FMTW(6)"] ", ^ atac-driver/alignOverlap/overlap-printAnno.C:46:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%c "uint32FMTW(4)":"uint32FMTW(09)"-"uint32FMTW(09)"["uint32FMTW(6)"] ", ^ atac-driver/alignOverlap/overlap-printAnno.C:63:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m1->iid2, sta, end); ^ atac-driver/alignOverlap/overlap-printAnno.C:63:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m1->iid2, sta, end); ^ atac-driver/alignOverlap/overlap-printAnno.C:63:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m1->iid2, sta, end); ^ atac-driver/alignOverlap/overlap-printAnno.C:65:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m1->iid1, m1->pos1 + off1, m1->pos1 + off1 + len); ^ atac-driver/alignOverlap/overlap-printAnno.C:65:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m1->iid1, m1->pos1 + off1, m1->pos1 + off1 + len); ^ atac-driver/alignOverlap/overlap-printAnno.C:65:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m1->iid1, m1->pos1 + off1, m1->pos1 + off1 + len); ^ atac-driver/alignOverlap/overlap-printAnno.C:69:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", uint32ZERO, uint32ZERO, uint32ZERO); ^ atac-driver/alignOverlap/overlap-printAnno.C:69:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", uint32ZERO, uint32ZERO, uint32ZERO); ^ atac-driver/alignOverlap/overlap-printAnno.C:69:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", uint32ZERO, uint32ZERO, uint32ZERO); ^ atac-driver/alignOverlap/overlap-printAnno.C:85:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m2->iid2, sta, end); ^ atac-driver/alignOverlap/overlap-printAnno.C:85:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m2->iid2, sta, end); ^ atac-driver/alignOverlap/overlap-printAnno.C:85:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m2->iid2, sta, end); ^ atac-driver/alignOverlap/overlap-printAnno.C:87:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m2->iid1, m2->pos1 + off2, m2->pos1 + off2 + len); ^ atac-driver/alignOverlap/overlap-printAnno.C:87:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m2->iid1, m2->pos1 + off2, m2->pos1 + off2 + len); ^ atac-driver/alignOverlap/overlap-printAnno.C:87:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m2->iid1, m2->pos1 + off2, m2->pos1 + off2 + len); ^ atac-driver/alignOverlap/overlap-printAnno.C:91:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", uint32ZERO, uint32ZERO, uint32ZERO); ^ atac-driver/alignOverlap/overlap-printAnno.C:91:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", uint32ZERO, uint32ZERO, uint32ZERO); ^ atac-driver/alignOverlap/overlap-printAnno.C:91:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", uint32ZERO, uint32ZERO, uint32ZERO); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-sort.o -c atac-driver/alignOverlap/overlap-sort.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-sort.C:19: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-sort.C:19: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-sort.C:19: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-sort.C:19: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-sort.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-sort.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-sort.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-sort.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ In file included from atac-driver/alignOverlap/overlap.H:41, from atac-driver/alignOverlap/overlap-sort.C:19: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ In file included from atac-driver/alignOverlap/overlap.H:45, from atac-driver/alignOverlap/overlap-sort.C:19: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); ^ ln -f /<>/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-process.C /<>/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-process1.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -DINDEX=1 -DNAME=process1 -DPOS1=pos1 -DPOS2=pos2 -DLEN2=len2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-process1.o -c atac-driver/alignOverlap/overlap-process1.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-process1.C:19: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-process1.C:19: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-process1.C:19: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-process1.C:19: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-process1.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-process1.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-process1.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-process1.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ In file included from atac-driver/alignOverlap/overlap.H:41, from atac-driver/alignOverlap/overlap-process1.C:19: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ In file included from atac-driver/alignOverlap/overlap.H:45, from atac-driver/alignOverlap/overlap-process1.C:19: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); ^ ln -f /<>/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-process.C /<>/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-process2.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -DINDEX=2 -DNAME=process2 -DPOS1=pos2 -DPOS2=pos1 -DLEN2=len1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-process2.o -c atac-driver/alignOverlap/overlap-process2.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-process2.C:19: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-process2.C:19: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-process2.C:19: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-process2.C:19: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-process2.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-process2.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-process2.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/alignOverlap/overlap.H:28, from atac-driver/alignOverlap/overlap-process2.C:19: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ In file included from atac-driver/alignOverlap/overlap.H:41, from atac-driver/alignOverlap/overlap-process2.C:19: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); ^ In file included from atac-driver/alignOverlap/overlap.H:45, from atac-driver/alignOverlap/overlap-process2.C:19: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o atac-driver/alignOverlap/overlap atac-driver/alignOverlap/overlap.o atac-driver/alignOverlap/overlap-find.o atac-driver/alignOverlap/overlap-matchTree.o atac-driver/alignOverlap/overlap-printAnno.o atac-driver/alignOverlap/overlap-sort.o atac-driver/alignOverlap/overlap-process1.o atac-driver/alignOverlap/overlap-process2.o /<>/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/gapShifter.o -c atac-driver/gapShifter/gapShifter.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/gapShifter/gapShifter.C:23: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/gapShifter/gapShifter.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/gapShifter/gapShifter.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/gapShifter/gapShifter.C:23: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/gapShifter.C:23: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/gapShifter/gapShifter.C:23: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/gapShifter/gapShifter.C:23: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/gapShifter/gapShifter.C:23: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/gapShifter/gapShifter.C:203:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "iid1 "uint32FMT", iid2 "uint32FMT"\n", iid1, iid2); ^ atac-driver/gapShifter/gapShifter.C:203:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "iid1 "uint32FMT", iid2 "uint32FMT"\n", iid1, iid2); ^ atac-driver/gapShifter/gapShifter.C:223:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "iid1 "uint32FMT", iid2 "uint32FMT"\n", iid1, iid2); ^ atac-driver/gapShifter/gapShifter.C:223:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "iid1 "uint32FMT", iid2 "uint32FMT"\n", iid1, iid2); ^ atac-driver/gapShifter/gapShifter.C:510:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", ^ atac-driver/gapShifter/gapShifter.C:510:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", ^ atac-driver/gapShifter/gapShifter.C:510:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", ^ atac-driver/gapShifter/gapShifter.C:510:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", ^ atac-driver/gapShifter/gapShifter.C:510:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", ^ atac-driver/gapShifter/gapShifter.C:515:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", ^ atac-driver/gapShifter/gapShifter.C:515:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", ^ atac-driver/gapShifter/gapShifter.C:515:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", ^ atac-driver/gapShifter/gapShifter.C:515:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", ^ atac-driver/gapShifter/gapShifter.C:515:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", ^ atac-driver/gapShifter/gapShifter.C:523:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", ^ atac-driver/gapShifter/gapShifter.C:523:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", ^ atac-driver/gapShifter/gapShifter.C:523:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", ^ atac-driver/gapShifter/gapShifter.C:523:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", ^ atac-driver/gapShifter/gapShifter.C:523:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", ^ atac-driver/gapShifter/gapShifter.C:528:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", ^ atac-driver/gapShifter/gapShifter.C:528:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", ^ atac-driver/gapShifter/gapShifter.C:528:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", ^ atac-driver/gapShifter/gapShifter.C:528:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", ^ atac-driver/gapShifter/gapShifter.C:528:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", ^ atac-driver/gapShifter/gapShifter.C:738:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Shifting gaps of length at most "uint32FMT" bases, to the %s.\n", gapLimit, (shiftRight) ? "right" : "left"); ^ atac-driver/gapShifter/gapShifter.C:750:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "numShifted = "uint32FMT"\n", numShifted); ^ atac-driver/gapShifter/gapShifter.C:751:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "numNotShifted = "uint32FMT"\n", numNotShifted); ^ atac-driver/gapShifter/gapShifter.C:752:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "numDiffSeq = "uint32FMT"\n", numDiffSeq); ^ atac-driver/gapShifter/gapShifter.C:753:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "numDiffOri = "uint32FMT"\n", numDiffOri); ^ atac-driver/gapShifter/gapShifter.C:754:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "numZeroLen = "uint32FMT"\n", numZeroLen); ^ atac-driver/gapShifter/gapShifter.C:755:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "numOutOfOrder = "uint32FMT"\n", numOutOfOrder); ^ atac-driver/gapShifter/gapShifter.C:756:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "numNotAdjacent = "uint32FMT"\n", numNotAdjacent); ^ atac-driver/gapShifter/gapShifter.C:757:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "numNoGap = "uint32FMT"\n", numNoGap); ^ atac-driver/gapShifter/gapShifter.C:758:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "numGapTooBig = "uint32FMT"\n", numGapTooBig); ^ atac-driver/gapShifter/gapShifter.C:759:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "numOverlapping = "uint32FMT"\n", numOverlapping); ^ atac-driver/gapShifter/gapShifter.C:762:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "amountShifted["uint32FMT"] = "uint32FMT" (number of gaps shifted by [number of bases])\n", x, amountShifted[x]); ^ atac-driver/gapShifter/gapShifter.C:762:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "amountShifted["uint32FMT"] = "uint32FMT" (number of gaps shifted by [number of bases])\n", x, amountShifted[x]); ^ atac-driver/gapShifter/gapShifter.C:764:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shifted "uint32FMT" out of "uint32FMT" (%6.2f%%)\n", gapsShifted, ML.numMatches(), (double)gapsShifted / (double)ML.numMatches() * 100.0); ^ atac-driver/gapShifter/gapShifter.C:764:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shifted "uint32FMT" out of "uint32FMT" (%6.2f%%)\n", gapsShifted, ML.numMatches(), (double)gapsShifted / (double)ML.numMatches() * 100.0); ^ atac-driver/gapShifter/gapShifter.C:780:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/gapShifter.C:780:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/gapShifter.C:780:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/gapShifter.C:780:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/gapShifter.C:780:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/gapShifter.C:780:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/gapShifter atac-driver/gapShifter/gapShifter.o /<>/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/extractSequence.o -c atac-driver/gapShifter/extractSequence.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/gapShifter/extractSequence.C:23: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/gapShifter/extractSequence.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/gapShifter/extractSequence.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/gapShifter/extractSequence.C:23: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/extractSequence.C:23: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/gapShifter/extractSequence.C:23: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/gapShifter/extractSequence.C:23: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/gapShifter/extractSequence.C:23: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/gapShifter/extractSequence.C:110:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(Aoutput, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" match %s(%s)\n", ^ atac-driver/gapShifter/extractSequence.C:110:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(Aoutput, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" match %s(%s)\n", ^ atac-driver/gapShifter/extractSequence.C:110:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(Aoutput, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" match %s(%s)\n", ^ atac-driver/gapShifter/extractSequence.C:121:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(Boutput, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" match %s(%s)\n", ^ atac-driver/gapShifter/extractSequence.C:121:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(Boutput, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" match %s(%s)\n", ^ atac-driver/gapShifter/extractSequence.C:121:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(Boutput, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" match %s(%s)\n", ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/extractSequence atac-driver/gapShifter/extractSequence.o /<>/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/extractUnmapped.o -c atac-driver/gapShifter/extractUnmapped.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/gapShifter/extractUnmapped.C:23: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/gapShifter/extractUnmapped.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/gapShifter/extractUnmapped.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/gapShifter/extractUnmapped.C:23: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/extractUnmapped.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/gapShifter/extractUnmapped.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/gapShifter/extractUnmapped.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/gapShifter/extractUnmapped.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/gapShifter/extractUnmapped.C:105:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(output, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" between match %s(%s) and %s(%s)\n", ^ atac-driver/gapShifter/extractUnmapped.C:105:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(output, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" between match %s(%s) and %s(%s)\n", ^ atac-driver/gapShifter/extractUnmapped.C:105:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(output, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" between match %s(%s) and %s(%s)\n", ^ atac-driver/gapShifter/extractUnmapped.C:583:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Done masking. "uint32FMT" in A, "uint32FMT" in B.\n", stats[0], stats[1]); ^ atac-driver/gapShifter/extractUnmapped.C:583:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Done masking. "uint32FMT" in A, "uint32FMT" in B.\n", stats[0], stats[1]); ^ atac-driver/gapShifter/extractUnmapped.C: In function ‘int main(int, char**)’: atac-driver/gapShifter/extractUnmapped.C:541:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(L, 1024, F); ~~~~~^~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/extractUnmapped atac-driver/gapShifter/extractUnmapped.o /<>/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/coalesceMatches.o -c atac-driver/gapShifter/coalesceMatches.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/gapShifter/coalesceMatches.C:23: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/gapShifter/coalesceMatches.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/gapShifter/coalesceMatches.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/gapShifter/coalesceMatches.C:23: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/coalesceMatches.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/gapShifter/coalesceMatches.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/gapShifter/coalesceMatches.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/gapShifter/coalesceMatches.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/coalesceMatches atac-driver/gapShifter/coalesceMatches.o /<>/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/correctGaps.o -c atac-driver/gapShifter/correctGaps.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/gapShifter/correctGaps.C:23: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/gapShifter/correctGaps.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/gapShifter/correctGaps.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/gapShifter/correctGaps.C:23: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/correctGaps.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/gapShifter/correctGaps.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/gapShifter/correctGaps.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/gapShifter/correctGaps.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/gapShifter/correctGaps.C:138:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "HEY! F gap of size "uint32FMT" not in a run?\n", gap1); ^ atac-driver/gapShifter/correctGaps.C:200:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "HEY! R gap of size "uint32FMT" not in a run?\n", gap1); ^ atac-driver/gapShifter/correctGaps.C:222:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "CLOSE "uint32FMT"----------------------------------------\n", gap1); ^ atac-driver/gapShifter/correctGaps.C:235:22: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "At gapSize="uint32FMT" closed "uint32FMT" f-gaps and "uint32FMT" r-gaps.\n", gapsize, fgaps, rgaps); ^ atac-driver/gapShifter/correctGaps.C:235:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "At gapSize="uint32FMT" closed "uint32FMT" f-gaps and "uint32FMT" r-gaps.\n", gapsize, fgaps, rgaps); ^ atac-driver/gapShifter/correctGaps.C:235:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, "At gapSize="uint32FMT" closed "uint32FMT" f-gaps and "uint32FMT" r-gaps.\n", gapsize, fgaps, rgaps); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/correctGaps atac-driver/gapShifter/correctGaps.o /<>/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/testAtac.o -c atac-driver/gapShifter/testAtac.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/gapShifter/testAtac.C:23: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/gapShifter/testAtac.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/gapShifter/testAtac.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/gapShifter/testAtac.C:23: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/testAtac.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/gapShifter/testAtac.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/gapShifter/testAtac.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/gapShifter/testAtac.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/gapShifter/testAtac.C:89:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "match "uint32FMT" is only %6.2f%% identity: ", ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/testAtac atac-driver/gapShifter/testAtac.o /<>/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/cleanAtac.o -c atac-driver/gapShifter/cleanAtac.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/gapShifter/cleanAtac.C:23: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/gapShifter/cleanAtac.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/gapShifter/cleanAtac.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/gapShifter/cleanAtac.C:23: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/cleanAtac.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/gapShifter/cleanAtac.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/gapShifter/cleanAtac.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/gapShifter/cleanAtac.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/gapShifter/cleanAtac.C:149:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "match "uint32FMT" is only %6.2f%% identity and "uint32FMT" long: ", ^ atac-driver/gapShifter/cleanAtac.C:149:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "match "uint32FMT" is only %6.2f%% identity and "uint32FMT" long: ", ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/cleanAtac atac-driver/gapShifter/cleanAtac.o /<>/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/projectFeatures.o -c atac-driver/gapShifter/projectFeatures.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/gapShifter/projectFeatures.C:23: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/gapShifter/projectFeatures.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/gapShifter/projectFeatures.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/gapShifter/projectFeatures.C:23: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/projectFeatures.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/gapShifter/projectFeatures.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/gapShifter/projectFeatures.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/gapShifter/projectFeatures.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/gapShifter/projectFeatures.C:72:2: warning: #warning BROKEN [-Wcpp] #warning BROKEN ^~~~~~~ atac-driver/gapShifter/projectFeatures.C:132:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:132:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:132:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:132:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:132:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:132:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:132:124: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:146:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:146:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:146:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:146:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:146:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:146:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:146:124: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:171:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:171:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:171:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:171:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:171:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:171:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:171:124: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:192:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:192:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:192:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:192:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:192:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:192:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/gapShifter/projectFeatures.C:192:124: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/projectFeatures atac-driver/gapShifter/projectFeatures.o /<>/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/lengthFilter/lengthFilter.o -c atac-driver/lengthFilter/lengthFilter.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from atac-driver/lengthFilter/lengthFilter.C:24: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from atac-driver/lengthFilter/lengthFilter.C:24: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from atac-driver/lengthFilter/lengthFilter.C:24: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from atac-driver/lengthFilter/lengthFilter.C:24: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ atac-driver/lengthFilter/lengthFilter.C:46:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(inLine, "/globalMatchMinSize="uint32FMT"\n", minLength); ^ atac-driver/lengthFilter/lengthFilter.C:57:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "/globalMatchMinSize="uint32FMT"\n", minLength); ^ atac-driver/lengthFilter/lengthFilter.C:114:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "lengthFilter: Discarded "uint32FMTW(8)" matches with total length "uint32FMTW(10)", %7.3f%% of the sequence in matches.\n", ^ atac-driver/lengthFilter/lengthFilter.C:114:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "lengthFilter: Discarded "uint32FMTW(8)" matches with total length "uint32FMTW(10)", %7.3f%% of the sequence in matches.\n", ^ atac-driver/lengthFilter/lengthFilter.C:116:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "lengthFilter: Saved "uint32FMTW(8)" matches with total length "uint32FMTW(10)", %7.3f%% of the sequence in matches.\n", ^ atac-driver/lengthFilter/lengthFilter.C:116:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "lengthFilter: Saved "uint32FMTW(8)" matches with total length "uint32FMTW(10)", %7.3f%% of the sequence in matches.\n", ^ atac-driver/lengthFilter/lengthFilter.C: In function ‘void readHeader(char*, FILE*, uint32&, FILE*)’: atac-driver/lengthFilter/lengthFilter.C:34:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(inLine, 1024, in); ~~~~~^~~~~~~~~~~~~~~~~~ atac-driver/lengthFilter/lengthFilter.C:53:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(inLine, 1024, in); ~~~~~^~~~~~~~~~~~~~~~~~ atac-driver/lengthFilter/lengthFilter.C: In function ‘int main(int, char**)’: atac-driver/lengthFilter/lengthFilter.C:111:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(inLine, 1024, stdin); ~~~~~^~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o atac-driver/lengthFilter/lengthFilter atac-driver/lengthFilter/lengthFilter.o /<>/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/matchExtender/matchExtender.o -c atac-driver/matchExtender/matchExtender.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/matchExtender/matchExtender.C:27: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/matchExtender/matchExtender.C:27: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/matchExtender/matchExtender.C:27: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/matchExtender/matchExtender.C:27: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/matchExtender/matchExtender.C:27: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/matchExtender/matchExtender.C:27: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/matchExtender/matchExtender.C:27: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/matchExtender/matchExtender.C:27: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/matchExtender/matchExtender.C:192:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" 1\n", ^ atac-driver/matchExtender/matchExtender.C:192:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" 1\n", ^ atac-driver/matchExtender/matchExtender.C:192:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" 1\n", ^ atac-driver/matchExtender/matchExtender.C:192:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" 1\n", ^ atac-driver/matchExtender/matchExtender.C:192:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" 1\n", ^ atac-driver/matchExtender/matchExtender.C:192:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" 1\n", ^ atac-driver/matchExtender/matchExtender.C:201:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" -1\n", ^ atac-driver/matchExtender/matchExtender.C:201:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" -1\n", ^ atac-driver/matchExtender/matchExtender.C:201:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" -1\n", ^ atac-driver/matchExtender/matchExtender.C:201:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" -1\n", ^ atac-driver/matchExtender/matchExtender.C:201:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" -1\n", ^ atac-driver/matchExtender/matchExtender.C:201:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" -1\n", ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/matchExtender/matchExtender-dump.o -c atac-driver/matchExtender/matchExtender-dump.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/matchExtender/matchExtender-dump.C:25: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/matchExtender/matchExtender-dump.C:25: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/matchExtender/matchExtender-dump.C:25: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/matchExtender/matchExtender-dump.C:25: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/matchExtender/match.H:8, from atac-driver/matchExtender/matchExtender-dump.C:26: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/matchExtender/match.H:8, from atac-driver/matchExtender/matchExtender-dump.C:26: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/matchExtender/match.H:8, from atac-driver/matchExtender/matchExtender-dump.C:26: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/matchExtender/match.H:8, from atac-driver/matchExtender/matchExtender-dump.C:26: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/matchExtender/matchExtender-dump.C:31:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "%s: ID:%s range1:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT")\n", ^ atac-driver/matchExtender/matchExtender-dump.C:31:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "%s: ID:%s range1:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT")\n", ^ atac-driver/matchExtender/matchExtender-dump.C:31:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "%s: ID:%s range1:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT")\n", ^ atac-driver/matchExtender/matchExtender-dump.C:31:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "%s: ID:%s range1:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT")\n", ^ atac-driver/matchExtender/matchExtender-dump.C:34:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "%s ID:%s range2:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT") diag:"uint32FMT" %s\n", ^ atac-driver/matchExtender/matchExtender-dump.C:34:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "%s ID:%s range2:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT") diag:"uint32FMT" %s\n", ^ atac-driver/matchExtender/matchExtender-dump.C:34:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "%s ID:%s range2:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT") diag:"uint32FMT" %s\n", ^ atac-driver/matchExtender/matchExtender-dump.C:34:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "%s ID:%s range2:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT") diag:"uint32FMT" %s\n", ^ atac-driver/matchExtender/matchExtender-dump.C:34:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "%s ID:%s range2:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT") diag:"uint32FMT" %s\n", ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/matchExtender/matchExtender-func.o -c atac-driver/matchExtender/matchExtender-func.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/matchExtender/matchExtender-func.C:26: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/matchExtender/matchExtender-func.C:26: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/matchExtender/matchExtender-func.C:26: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/matchExtender/matchExtender-func.C:26: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/matchExtender/matchExtender-func.C:27: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/matchExtender/matchExtender-func.C:27: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/matchExtender/matchExtender-func.C:27: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/matchExtender/matchExtender-func.C:27: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o atac-driver/matchExtender/matchExtender atac-driver/matchExtender/matchExtender.o atac-driver/matchExtender/matchExtender-dump.o atac-driver/matchExtender/matchExtender-func.o /<>/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/mismatchCounter/mismatchCounter.o -c atac-driver/mismatchCounter/mismatchCounter.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from atac-driver/mismatchCounter/mismatchCounter.C:23: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/mismatchCounter/mismatchCounter.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/mismatchCounter/mismatchCounter.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from atac-driver/mismatchCounter/mismatchCounter.C:23: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/mismatchCounter/mismatchCounter.C:25: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/mismatchCounter/mismatchCounter.C:25: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/mismatchCounter/mismatchCounter.C:25: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/mismatchCounter/mismatchCounter.C:25: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/mismatchCounter/mismatchCounter.C:197:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "globalSequence = "uint32FMT"\n", globalSequence); ^ atac-driver/mismatchCounter/mismatchCounter.C:198:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "globalMismatches = "uint32FMT"\n", globalMismatches); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o atac-driver/mismatchCounter/mismatchCounter atac-driver/mismatchCounter/mismatchCounter.o /<>/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/statsGenerator/statsGenerator.o -c atac-driver/statsGenerator/statsGenerator.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/statsGenerator/statsGenerator.C:26: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/statsGenerator/statsGenerator.C:26: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/statsGenerator/statsGenerator.C:26: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/statsGenerator/statsGenerator.C:26: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/statsGenerator/statsGenerator.C:26: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/statsGenerator/statsGenerator.C:26: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/statsGenerator/statsGenerator.C:26: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/statsGenerator/statsGenerator.C:26: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/statsGenerator/statsGenerator.C:91:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "histogram %s "uint32FMT" items %8.3f average %8.3f std.dev.\n", ^ atac-driver/statsGenerator/statsGenerator.C:102:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, uint64FMT" "uint32FMT"\n", i * _b, _h[i]); ^ atac-driver/statsGenerator/statsGenerator.C:103:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, ">"uint64FMT" "uint32FMT"\n", _m, _l); ^ atac-driver/statsGenerator/statsGenerator.C:103:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, ">"uint64FMT" "uint32FMT"\n", _m, _l); ^ atac-driver/statsGenerator/statsGenerator.C:133:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "plot [0:"uint64FMT"][0:"uint64FMT"] \"%s.%s.histogramdat\" using 2 with lines\n", ^ atac-driver/statsGenerator/statsGenerator.C:133:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "plot [0:"uint64FMT"][0:"uint64FMT"] \"%s.%s.histogramdat\" using 2 with lines\n", ^ atac-driver/statsGenerator/statsGenerator.C:136:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "plot [0:"uint64FMT"][0:"uint64FMT"] \"%s.%s.histogramdat\" using 2 with lines\n", ^ atac-driver/statsGenerator/statsGenerator.C:136:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "plot [0:"uint64FMT"][0:"uint64FMT"] \"%s.%s.histogramdat\" using 2 with lines\n", ^ atac-driver/statsGenerator/statsGenerator.C:172:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "totalLength %s "uint64FMT" %s "uint64FMT" # all letters, including N\n", ^ atac-driver/statsGenerator/statsGenerator.C:172:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "totalLength %s "uint64FMT" %s "uint64FMT" # all letters, including N\n", ^ atac-driver/statsGenerator/statsGenerator.C:193:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "totalLength %s "uint64FMT" %s "uint64FMT" # ACGT only\n", ^ atac-driver/statsGenerator/statsGenerator.C:193:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "totalLength %s "uint64FMT" %s "uint64FMT" # ACGT only\n", ^ atac-driver/statsGenerator/statsGenerator.C:282:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "numberOfItems "uint64FMT"\n", (uint64)ifa.numberOfIntervals()); ^ atac-driver/statsGenerator/statsGenerator.C:283:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "totalLength "uint64FMT" # sum of lengths of all features\n", ifa.sumOfLengths()); ^ atac-driver/statsGenerator/statsGenerator.C:285:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "numberOfItems "uint64FMT" # after merging overlapping regions\n", (uint64)ifa.numberOfIntervals()); ^ atac-driver/statsGenerator/statsGenerator.C:286:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "coveredLength "uint64FMT" # sequence covered by a feature, including N\n", ifa.sumOfLengths()); ^ atac-driver/statsGenerator/statsGenerator.C:287:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "coveredLength "uint64FMT" # sequence covered by a feature, ACGT only\n", tandemRepeatACGTLength(ifa, offset1, A)); ^ atac-driver/statsGenerator/statsGenerator.C:289:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "numberOfItems "uint64FMT" # after merging overlapping regions, only in matches\n", (uint64)mma.numberOfIntervals()); ^ atac-driver/statsGenerator/statsGenerator.C:290:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "inMatches "uint64FMT" # sequence covered by a feature and in a match, including N\n", mma.sumOfLengths()); ^ atac-driver/statsGenerator/statsGenerator.C:291:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "inMatches "uint64FMT" # sequence covered by a feature and in a match, ACGT only\n", tandemRepeatACGTLength(mma, offset1, A)); ^ atac-driver/statsGenerator/statsGenerator.C:295:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "numberOfItems "uint64FMT"\n", (uint64)ifb.numberOfIntervals()); ^ atac-driver/statsGenerator/statsGenerator.C:296:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "totalLength "uint64FMT" # sum of lengths of all features\n", ifb.sumOfLengths()); ^ atac-driver/statsGenerator/statsGenerator.C:298:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "numberOfItems "uint64FMT" # after merging overlapping regions\n", (uint64)ifb.numberOfIntervals()); ^ atac-driver/statsGenerator/statsGenerator.C:299:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "coveredLength "uint64FMT" # sequence covered by a feature, including N\n", ifb.sumOfLengths()); ^ atac-driver/statsGenerator/statsGenerator.C:300:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "coveredLength "uint64FMT" # sequence covered by a feature, ACGT only\n", tandemRepeatACGTLength(ifb, offset2, B)); ^ atac-driver/statsGenerator/statsGenerator.C:302:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "numberOfItems "uint64FMT" # after merging overlapping regions, only in matches\n", (uint64)mmb.numberOfIntervals()); ^ atac-driver/statsGenerator/statsGenerator.C:303:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "inMatches "uint64FMT" # sequence covered by a feature and in a match, including N\n", mmb.sumOfLengths()); ^ atac-driver/statsGenerator/statsGenerator.C:304:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "inMatches "uint64FMT" # sequence covered by a feature and in a match, ACGT only\n", tandemRepeatACGTLength(mmb, offset2, B)); ^ atac-driver/statsGenerator/statsGenerator.C:335:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "numberOfItems "uint64FMT"\n", (uint64)matches.numberOfMatches()); ^ atac-driver/statsGenerator/statsGenerator.C:337:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "matchLength %s "uint64FMT" %s "uint64FMT" # Sum of lengths of sequence in matches\n", ^ atac-driver/statsGenerator/statsGenerator.C:337:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "matchLength %s "uint64FMT" %s "uint64FMT" # Sum of lengths of sequence in matches\n", ^ atac-driver/statsGenerator/statsGenerator.C:349:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "coveredLength %s "uint64FMT" %s "uint64FMT" # sequence covered by a match, including N\n", ^ atac-driver/statsGenerator/statsGenerator.C:349:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "coveredLength %s "uint64FMT" %s "uint64FMT" # sequence covered by a match, including N\n", ^ atac-driver/statsGenerator/statsGenerator.C:353:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "coveredLength %s "uint64FMT" %s "uint64FMT" # sequence covered by a match, ACGT only (new)\n", ^ atac-driver/statsGenerator/statsGenerator.C:353:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "coveredLength %s "uint64FMT" %s "uint64FMT" # sequence covered by a match, ACGT only (new)\n", ^ atac-driver/statsGenerator/statsGenerator.C:409:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, uint64FMT" "uint32FMT"\n", n, n50[iter-1]); ^ atac-driver/statsGenerator/statsGenerator.C:507:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "chrCoveredLength["uint32FMTW(2)"] %s "uint64FMT" "uint64FMT" %6.2f%% "uint64FMT" "uint64FMT" %6.2f%% # seqCov, totalSeq for both ALL and ACGTonly\n", ^ atac-driver/statsGenerator/statsGenerator.C:507:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "chrCoveredLength["uint32FMTW(2)"] %s "uint64FMT" "uint64FMT" %6.2f%% "uint64FMT" "uint64FMT" %6.2f%% # seqCov, totalSeq for both ALL and ACGTonly\n", ^ atac-driver/statsGenerator/statsGenerator.C:507:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "chrCoveredLength["uint32FMTW(2)"] %s "uint64FMT" "uint64FMT" %6.2f%% "uint64FMT" "uint64FMT" %6.2f%% # seqCov, totalSeq for both ALL and ACGTonly\n", ^ atac-driver/statsGenerator/statsGenerator.C:507:82: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "chrCoveredLength["uint32FMTW(2)"] %s "uint64FMT" "uint64FMT" %6.2f%% "uint64FMT" "uint64FMT" %6.2f%% # seqCov, totalSeq for both ALL and ACGTonly\n", ^ atac-driver/statsGenerator/statsGenerator.C:507:104: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "chrCoveredLength["uint32FMTW(2)"] %s "uint64FMT" "uint64FMT" %6.2f%% "uint64FMT" "uint64FMT" %6.2f%% # seqCov, totalSeq for both ALL and ACGTonly\n", ^ atac-driver/statsGenerator/statsGenerator.C:516:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(label, "chr"uint32FMTW(02)"full", c); ^ atac-driver/statsGenerator/statsGenerator.C:520:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(label, "chr"uint32FMTW(02)"acgt", c); ^ atac-driver/statsGenerator/statsGenerator.C:628:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "runMissingFull %s "uint64FMT" %s "uint64FMT" # sequence in run, not covered, including N\n", ^ atac-driver/statsGenerator/statsGenerator.C:628:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "runMissingFull %s "uint64FMT" %s "uint64FMT" # sequence in run, not covered, including N\n", ^ atac-driver/statsGenerator/statsGenerator.C:631:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "runMissingFull %s "uint64FMT" %s "uint64FMT" # sequence in run, not covered, ACGT only\n", ^ atac-driver/statsGenerator/statsGenerator.C:631:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "runMissingFull %s "uint64FMT" %s "uint64FMT" # sequence in run, not covered, ACGT only\n", ^ atac-driver/statsGenerator/statsGenerator.C: In function ‘void tandemRepeatStats(atacFileStream&, atacFileStream&, atacFile&, seqCache*, seqCache*)’: atac-driver/statsGenerator/statsGenerator.C:267:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] while ((f = featuresA.nextFeature("tr")) != 0L) ^ atac-driver/statsGenerator/statsGenerator.C:269:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] while ((f = featuresB.nextFeature("tr")) != 0L) ^ atac-driver/statsGenerator/statsGenerator.C: In function ‘void MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’: atac-driver/statsGenerator/statsGenerator.C:99:23: warning: ‘.histogramdat’ directive writing 13 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(filename, "%s.%s.histogramdat", prefix, label); ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from atac-driver/statsGenerator/statsGenerator.C:21: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 15 or more bytes (assuming 1038) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C:127:23: warning: ‘.histogram.gnuplot’ directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(filename, "%s.%s.histogram.gnuplot", prefix, label); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from atac-driver/statsGenerator/statsGenerator.C:21: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 20 or more bytes (assuming 1043) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C:140:23: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] sprintf(filename, "gnuplot < %s.%s.histogram.gnuplot", prefix, label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C:518:32: hist1full[c]->plot(prefix, label); ~~~~~ In file included from /usr/include/stdio.h:862, from atac-driver/statsGenerator/statsGenerator.C:21: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 30 or more bytes (assuming 1053) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C:99:23: warning: ‘.histogramdat’ directive writing 13 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(filename, "%s.%s.histogramdat", prefix, label); ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from atac-driver/statsGenerator/statsGenerator.C:21: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 15 or more bytes (assuming 1038) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C:127:23: warning: ‘.histogram.gnuplot’ directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(filename, "%s.%s.histogram.gnuplot", prefix, label); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from atac-driver/statsGenerator/statsGenerator.C:21: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 20 or more bytes (assuming 1043) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C:140:23: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] sprintf(filename, "gnuplot < %s.%s.histogram.gnuplot", prefix, label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C:522:32: hist1acgt[c]->plot(prefix, label); ~~~~~ In file included from /usr/include/stdio.h:862, from atac-driver/statsGenerator/statsGenerator.C:21: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 30 or more bytes (assuming 1053) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C: In function ‘void MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’: atac-driver/statsGenerator/statsGenerator.C:99:23: warning: ‘.histogramdat’ directive writing 13 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(filename, "%s.%s.histogramdat", prefix, label); ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from atac-driver/statsGenerator/statsGenerator.C:21: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 15 or more bytes (assuming 1038) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C:127:23: warning: ‘.histogram.gnuplot’ directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(filename, "%s.%s.histogram.gnuplot", prefix, label); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from atac-driver/statsGenerator/statsGenerator.C:21: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 20 or more bytes (assuming 1043) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C:140:23: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] sprintf(filename, "gnuplot < %s.%s.histogram.gnuplot", prefix, label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C:518:32: hist1full[c]->plot(prefix, label); ~~~~~ In file included from /usr/include/stdio.h:862, from atac-driver/statsGenerator/statsGenerator.C:21: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 30 or more bytes (assuming 1053) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C:99:23: warning: ‘.histogramdat’ directive writing 13 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(filename, "%s.%s.histogramdat", prefix, label); ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from atac-driver/statsGenerator/statsGenerator.C:21: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 15 or more bytes (assuming 1038) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C:127:23: warning: ‘.histogram.gnuplot’ directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(filename, "%s.%s.histogram.gnuplot", prefix, label); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from atac-driver/statsGenerator/statsGenerator.C:21: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 20 or more bytes (assuming 1043) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C:140:23: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] sprintf(filename, "gnuplot < %s.%s.histogram.gnuplot", prefix, label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C:522:32: hist1acgt[c]->plot(prefix, label); ~~~~~ In file included from /usr/include/stdio.h:862, from atac-driver/statsGenerator/statsGenerator.C:21: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 30 or more bytes (assuming 1053) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o atac-driver/statsGenerator/statsGenerator atac-driver/statsGenerator/statsGenerator.o /<>/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/uniqueFilter/uniqueFilter.o -c atac-driver/uniqueFilter/uniqueFilter.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from atac-driver/uniqueFilter/uniqueFilter.C:23: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from atac-driver/uniqueFilter/uniqueFilter.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from atac-driver/uniqueFilter/uniqueFilter.C:23: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from atac-driver/uniqueFilter/uniqueFilter.C:23: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/uniqueFilter/uniqueFilter.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/uniqueFilter/uniqueFilter.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/uniqueFilter/uniqueFilter.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/uniqueFilter/uniqueFilter.C:24: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:226:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Sorting error -- have negative coverage (axis="uint32FMT" position="uint32FMT")!\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:226:80: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Sorting error -- have negative coverage (axis="uint32FMT" position="uint32FMT")!\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:236:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "offsetsToCoverage()-- Found "uint64FMT" bases at coverage "uint32FMT" or greater.\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:236:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "offsetsToCoverage()-- Found "uint64FMT" bases at coverage "uint32FMT" or greater.\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:370:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Got fwd intersection on i="uint32FMT" matchNumber="uint32FMT"\n", i, matchNumber); ^ atac-driver/uniqueFilter/uniqueFilter.C:370:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Got fwd intersection on i="uint32FMT" matchNumber="uint32FMT"\n", i, matchNumber); ^ atac-driver/uniqueFilter/uniqueFilter.C:371:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:371:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:371:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:371:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:374:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "--key1 beg="uint32FMT" end="uint32FMT"\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:374:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "--key1 beg="uint32FMT" end="uint32FMT"\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:379:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Got rev intersection on i="uint32FMT" matchNumber="uint32FMT"\n", i, matchNumber); ^ atac-driver/uniqueFilter/uniqueFilter.C:379:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Got rev intersection on i="uint32FMT" matchNumber="uint32FMT"\n", i, matchNumber); ^ atac-driver/uniqueFilter/uniqueFilter.C:380:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:380:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:380:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:380:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:383:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "--key2 beg="uint32FMT" end="uint32FMT"\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:383:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "--key2 beg="uint32FMT" end="uint32FMT"\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:418:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define D08D2 uint32FMTW(8)" "uint32FMTW(8) ^ atac-driver/uniqueFilter/uniqueFilter.C:419:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define KEY1THING "key1 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" ^ atac-driver/uniqueFilter/uniqueFilter.C:419:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define KEY1THING "key1 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" ^ atac-driver/uniqueFilter/uniqueFilter.C:419:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define KEY1THING "key1 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" ^ atac-driver/uniqueFilter/uniqueFilter.C:419:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define KEY1THING "key1 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" ^ atac-driver/uniqueFilter/uniqueFilter.C:419:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define KEY1THING "key1 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" ^ atac-driver/uniqueFilter/uniqueFilter.C:420:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define KEY2THING "key2 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" ^ atac-driver/uniqueFilter/uniqueFilter.C:420:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define KEY2THING "key2 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" ^ atac-driver/uniqueFilter/uniqueFilter.C:420:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define KEY2THING "key2 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" ^ atac-driver/uniqueFilter/uniqueFilter.C:420:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define KEY2THING "key2 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" ^ atac-driver/uniqueFilter/uniqueFilter.C:420:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define KEY2THING "key2 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" ^ atac-driver/uniqueFilter/uniqueFilter.C:818:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "match "uint32FMT" is outside the extent!\n", i); ^ atac-driver/uniqueFilter/uniqueFilter.C:828:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M %s %s."uint32FMT" . %s "uint32FMT" "uint32FMT" 1 %s "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:828:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M %s %s."uint32FMT" . %s "uint32FMT" "uint32FMT" 1 %s "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:828:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M %s %s."uint32FMT" . %s "uint32FMT" "uint32FMT" 1 %s "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:828:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M %s %s."uint32FMT" . %s "uint32FMT" "uint32FMT" 1 %s "uint32FMT" "uint32FMT" %d\n", ^ atac-driver/uniqueFilter/uniqueFilter.C:828:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M %s %s."uint32FMT" . %s "uint32FMT" "uint32FMT" 1 %s "uint32FMT" "uint32FMT" %d\n", ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o atac-driver/uniqueFilter/uniqueFilter atac-driver/uniqueFilter/uniqueFilter.o /<>/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/clumpMaker/clumpMaker.o -c atac-driver/clumpMaker/clumpMaker.C In file included from atac-driver/clumpMaker/clumpMaker.C:4: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/clumpMaker/clumpMaker.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/clumpMaker/clumpMaker.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:26, from atac-driver/clumpMaker/clumpMaker.C:5: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:30, from atac-driver/clumpMaker/clumpMaker.C:5: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:34, from atac-driver/clumpMaker/clumpMaker.C:5: /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/clumpMaker/clumpMaker.C:5: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", ^ In file included from /<>/kmer-0~20150903+r2013/atac-driver/libatac/atac.H:37, from atac-driver/clumpMaker/clumpMaker.C:5: /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", ^ atac-driver/clumpMaker/clumpMaker.C:341:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(C.matchuid, "clump"int32FMTW(06), cc); ^ atac-driver/clumpMaker/clumpMaker.C:377:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(hits[mm].match.parentuid, "clump"int32FMTW(06), cc); ^ atac-driver/clumpMaker/clumpMaker.C: In function ‘int main(int, char**)’: atac-driver/clumpMaker/clumpMaker.C:220:12: warning: variable ‘isSorted’ set but not used [-Wunused-but-set-variable] bool isSorted = false; ^~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o atac-driver/clumpMaker/clumpMaker atac-driver/clumpMaker/clumpMaker.o /<>/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_dpaligner.o -c atac-driver/chainer/localalign/GF_ALN_dpaligner.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_local.o -c atac-driver/chainer/localalign/GF_ALN_local.C atac-driver/chainer/localalign/GF_ALN_local.C: In function ‘void Align_Recursion(const char*, int, const char*, int, const Trapezoid*, int, int, int, double, int)’: atac-driver/chainer/localalign/GF_ALN_local.C:872:15: warning: variable ‘indel’ set but not used [-Wunused-but-set-variable] int j, mid, indel; ^~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_overlap.o -c atac-driver/chainer/localalign/GF_ALN_overlap.C atac-driver/chainer/localalign/GF_ALN_overlap.C: In function ‘void AVLinit()’: atac-driver/chainer/localalign/GF_ALN_overlap.C:93:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] OutOfMemory("Candidate list"); ^ atac-driver/chainer/localalign/GF_ALN_overlap.C: In function ‘AVLnode* NEW(AVLnode*, Candidate*, AVLnode*)’: atac-driver/chainer/localalign/GF_ALN_overlap.C:125:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] OutOfMemory("Candidate list"); ^ atac-driver/chainer/localalign/GF_ALN_overlap.C: In function ‘Local_Overlap* Find_Local_Overlap(int, int, int, int, Local_Segment*, int, int, double)’: atac-driver/chainer/localalign/GF_ALN_overlap.C:396:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] OutOfMemory("Overlap Trace Array"); ^ atac-driver/chainer/localalign/GF_ALN_overlap.C:662:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] OutOfMemory("Overlap descriptor"); ^ atac-driver/chainer/localalign/GF_ALN_overlap.C:614:20: warning: variable ‘beg’ set but not used [-Wunused-but-set-variable] int best, end, beg; ^~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_loverlapper.o -c atac-driver/chainer/localalign/GF_ALN_loverlapper.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_pieceOlap.o -c atac-driver/chainer/localalign/GF_ALN_pieceOlap.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -I/usr/include/python2.7 -o atac-driver/chainer/localalign/localAlignerInterfacemodule.o -c atac-driver/chainer/localalign/localAlignerInterfacemodule.C atac-driver/chainer/localalign/localAlignerInterfacemodule.C: In function ‘PyObject* spam_syntenicSegments(PyObject*, PyObject*)’: atac-driver/chainer/localalign/localAlignerInterfacemodule.C:176:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] char *Aseq = "undefined"; ^~~~~~~~~~~ atac-driver/chainer/localalign/localAlignerInterfacemodule.C:179:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] char *Bseq = "undefined"; ^~~~~~~~~~~ rm -f atac-driver/chainer/localAlignerInterfacemodule.so && g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -o atac-driver/chainer/localAlignerInterfacemodule.so atac-driver/chainer/localalign/GF_ALN_dpaligner.o atac-driver/chainer/localalign/GF_ALN_local.o atac-driver/chainer/localalign/GF_ALN_overlap.o atac-driver/chainer/localalign/GF_ALN_loverlapper.o atac-driver/chainer/localalign/GF_ALN_pieceOlap.o atac-driver/chainer/localalign/localAlignerInterfacemodule.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/halign/halign.o -c atac-driver/chainer/halign/halign.C atac-driver/chainer/halign/halign.C: In function ‘int diff(const char*, const char*, int, int, int*, int*, int*, int*, int, int, int, int, int, int, int, int, int, EditScript**, EditScript**)’: atac-driver/chainer/halign/halign.C:295:9: warning: variable ‘cost1’ set but not used [-Wunused-but-set-variable] int cost1, cost2; ^~~~~ atac-driver/chainer/halign/halign.C:295:16: warning: variable ‘cost2’ set but not used [-Wunused-but-set-variable] int cost1, cost2; ^~~~~ atac-driver/chainer/halign/halign.C:345:9: warning: variable ‘cost1’ set but not used [-Wunused-but-set-variable] int cost1, cost2; ^~~~~ atac-driver/chainer/halign/halign.C:345:16: warning: variable ‘cost2’ set but not used [-Wunused-but-set-variable] int cost1, cost2; ^~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -I/usr/include/python2.7 -o atac-driver/chainer/halign/halignmodule.o -c atac-driver/chainer/halign/halignmodule.C rm -f atac-driver/chainer/halignmodule.so && g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -o atac-driver/chainer/halignmodule.so atac-driver/chainer/halign/halign.o atac-driver/chainer/halign/halignmodule.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/atac-driver/libatac/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chimera/happy-clones-span-clumps.o -c atac-driver/chimera/happy-clones-span-clumps.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from atac-driver/chimera/happy-clones-span-clumps.C:7: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from atac-driver/chimera/happy-clones-span-clumps.C:7: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from atac-driver/chimera/happy-clones-span-clumps.C:7: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from atac-driver/chimera/happy-clones-span-clumps.C:7: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ atac-driver/chimera/happy-clones-span-clumps.C:202:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: increase scaffoldsMax "uint32FMT"\n", scaffoldid); ^ atac-driver/chimera/happy-clones-span-clumps.C:229:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Deleted "uint32FMT" scaffolds with less than 2 clumps.\n", deleted); ^ atac-driver/chimera/happy-clones-span-clumps.C:230:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Remain "uint32FMT" scaffolds with more than 2 clumps.\n", remain); ^ atac-driver/chimera/happy-clones-span-clumps.C:248:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" begin "uint32FMT" end "uint32FMT"\n", ^ atac-driver/chimera/happy-clones-span-clumps.C:248:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" begin "uint32FMT" end "uint32FMT"\n", ^ atac-driver/chimera/happy-clones-span-clumps.C:248:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" begin "uint32FMT" end "uint32FMT"\n", ^ atac-driver/chimera/happy-clones-span-clumps.C:248:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" begin "uint32FMT" end "uint32FMT"\n", ^ atac-driver/chimera/happy-clones-span-clumps.C:255:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and clump "uint32FMT" OVERLAP\n", ^ atac-driver/chimera/happy-clones-span-clumps.C:255:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and clump "uint32FMT" OVERLAP\n", ^ atac-driver/chimera/happy-clones-span-clumps.C:255:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and clump "uint32FMT" OVERLAP\n", ^ atac-driver/chimera/happy-clones-span-clumps.C:263:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and "uint32FMT" confirmed by "uint32FMT" clones.\n", ^ atac-driver/chimera/happy-clones-span-clumps.C:263:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and "uint32FMT" confirmed by "uint32FMT" clones.\n", ^ atac-driver/chimera/happy-clones-span-clumps.C:263:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and "uint32FMT" confirmed by "uint32FMT" clones.\n", ^ atac-driver/chimera/happy-clones-span-clumps.C:263:85: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and "uint32FMT" confirmed by "uint32FMT" clones.\n", ^ atac-driver/chimera/happy-clones-span-clumps.C:449:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s spans clump in scaffold %s,"uint32FMT"\n", ina, A[7], scfa); ^ atac-driver/chimera/happy-clones-span-clumps.C:453:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s spans clump in scaffold %s,"uint32FMT" \n", inb, B[7], scfb); ^ atac-driver/chimera/happy-clones-span-clumps.C:464:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "scaffold %s,"uint32FMT" clump "uint32FMT" "uint32FMT" confirmed by %s\n", ^ atac-driver/chimera/happy-clones-span-clumps.C:464:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "scaffold %s,"uint32FMT" clump "uint32FMT" "uint32FMT" confirmed by %s\n", ^ atac-driver/chimera/happy-clones-span-clumps.C:464:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "scaffold %s,"uint32FMT" clump "uint32FMT" "uint32FMT" confirmed by %s\n", ^ atac-driver/chimera/happy-clones-span-clumps.C: In function ‘int main(int, char**)’: atac-driver/chimera/happy-clones-span-clumps.C:393:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] char *uidmapName = "/project/huref6/assembly/fasta/HUREF6A.info"; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C: In function ‘atacClumpCoordTree* buildCoordTree(char*)’: atac-driver/chimera/happy-clones-span-clumps.C:313:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(inl, 1024, inf); ~~~~~^~~~~~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C:340:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(inl, 1024, inf); ~~~~~^~~~~~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C: In function ‘int main(int, char**)’: atac-driver/chimera/happy-clones-span-clumps.C:402:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(L, 1024, F); ~~~~~^~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C:409:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(L, 1024, F); ~~~~~^~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C:426:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(ina, 1024, inf); chomp(ina); ~~~~~^~~~~~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C:427:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(inb, 1024, inf); chomp(inb); ~~~~~^~~~~~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C:473:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(ina, 1024, inf); chomp(ina); ~~~~~^~~~~~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C:474:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(inb, 1024, inf); chomp(inb); ~~~~~^~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o atac-driver/chimera/happy-clones-span-clumps atac-driver/chimera/happy-clones-span-clumps.o /<>/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/seatac.o -c seatac/seatac.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/seatac.C:4: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/seatac.C:4: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/seatac.C:4: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/seatac.C:4: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seatac/seatac.H:25, from seatac/seatac.C:4: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/seatac.C:4: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/seatac.C:4: seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", ^ In file included from seatac/seatac.H:27, from seatac/seatac.C:4: seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seatac/seatac.C:201:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "O:"uint32FMTW(7)" S:"uint32FMTW(7)" I:"uint32FMTW(7)" T:"uint32FMTW(7)" (%5.1f%%; %8.3f/sec) Finish in %5.2f seconds.\r", ^ seatac/seatac.C:201:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "O:"uint32FMTW(7)" S:"uint32FMTW(7)" I:"uint32FMTW(7)" T:"uint32FMTW(7)" (%5.1f%%; %8.3f/sec) Finish in %5.2f seconds.\r", ^ seatac/seatac.C:201:52: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "O:"uint32FMTW(7)" S:"uint32FMTW(7)" I:"uint32FMTW(7)" T:"uint32FMTW(7)" (%5.1f%%; %8.3f/sec) Finish in %5.2f seconds.\r", ^ seatac/seatac.C:201:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "O:"uint32FMTW(7)" S:"uint32FMTW(7)" I:"uint32FMTW(7)" T:"uint32FMTW(7)" (%5.1f%%; %8.3f/sec) Finish in %5.2f seconds.\r", ^ seatac/seatac.C:239:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "\n"uint32FMTW(7)" sequences (%5.1f%%; %8.3f/sec) %5.2f seconds.\n", ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/seatac.C:4: seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ In file included from seatac/seatac.H:27, from seatac/seatac.C:4: seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/configuration.o -c seatac/configuration.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/configuration.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/configuration.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/configuration.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/configuration.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seatac/seatac.H:25, from seatac/configuration.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/configuration.C:1: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/configuration.C:1: seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", ^ In file included from seatac/seatac.H:27, from seatac/configuration.C:1: seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seatac/configuration.C:259:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "/seatacNumSearchThreads="uint32FMT"\n", _numSearchThreads); ^ seatac/configuration.C:260:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "/seatacLoaderHighWaterMark="uint32FMT"\n", _loaderHighWaterMark); ^ seatac/configuration.C:264:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "/seatacWriterHighWaterMark="uint32FMT"\n", _writerHighWaterMark); ^ seatac/configuration.C:267:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "/seatacMaxDiagonal="uint32FMT"\n", _maxDiagonal); ^ seatac/configuration.C:268:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "/seatacMaxGap="uint32FMT"\n", _maxGap); ^ seatac/configuration.C:269:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "/seatacQsOverlap="uint32FMT"\n", _qsOverlap); ^ seatac/configuration.C:270:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "/seatacDsOverlap="uint32FMT"\n", _dsOverlap); ^ seatac/configuration.C:271:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "/seatacMinLength="uint32FMT"\n", _minLength + _merSize); ^ seatac/configuration.C:272:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "/seatacMerSize="uint32FMT"\n", _merSize); ^ seatac/configuration.C:273:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "/seatacMerSkip="uint32FMT"\n", _merSkip); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/configuration.C:1: seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ In file included from seatac/seatac.H:27, from seatac/configuration.C:1: seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/encodedQuery.o -c seatac/encodedQuery.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/encodedQuery.C:3: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/encodedQuery.C:3: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/encodedQuery.C:3: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/encodedQuery.C:3: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seatac/seatac.H:25, from seatac/encodedQuery.C:3: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/encodedQuery.C:3: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/encodedQuery.C:3: seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", ^ In file included from seatac/seatac.H:27, from seatac/encodedQuery.C:3: seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/encodedQuery.C:3: seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ In file included from seatac/seatac.H:27, from seatac/encodedQuery.C:3: seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/hitMatrix.o -c seatac/hitMatrix.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/hitMatrix.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/hitMatrix.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/hitMatrix.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/hitMatrix.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seatac/seatac.H:25, from seatac/hitMatrix.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/hitMatrix.C:1: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/hitMatrix.C:1: seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", ^ In file included from seatac/seatac.H:27, from seatac/hitMatrix.C:1: seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/hitMatrix.C:1: seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ In file included from seatac/seatac.H:27, from seatac/hitMatrix.C:1: seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/thr-search.o -c seatac/thr-search.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/thr-search.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/thr-search.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/thr-search.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/thr-search.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seatac/seatac.H:25, from seatac/thr-search.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/thr-search.C:1: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/thr-search.C:1: seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", ^ In file included from seatac/seatac.H:27, from seatac/thr-search.C:1: seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seatac/thr-search.C:3:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] char const *srchGbye = "[%ld] computed: "uint64FMTW(8)" blocked: "uint64FMTW(4)"/"uint64FMTW(4)" encodeTime: %7.2f searchTime: %7.2f processTime: %7.2f\n"; ^ seatac/thr-search.C:3:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] char const *srchGbye = "[%ld] computed: "uint64FMTW(8)" blocked: "uint64FMTW(4)"/"uint64FMTW(4)" encodeTime: %7.2f searchTime: %7.2f processTime: %7.2f\n"; ^ seatac/thr-search.C:3:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] char const *srchGbye = "[%ld] computed: "uint64FMTW(8)" blocked: "uint64FMTW(4)"/"uint64FMTW(4)" encodeTime: %7.2f searchTime: %7.2f processTime: %7.2f\n"; ^ seatac/thr-search.C:130:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, uint64FMT" Blocked by output (idx = "uint32FMT", outputPos = "uint32FMT").\n", (long)U, idx, outputPos); ^ seatac/thr-search.C:130:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, uint64FMT" Blocked by output (idx = "uint32FMT", outputPos = "uint32FMT").\n", (long)U, idx, outputPos); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/thr-search.C:1: seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ In file included from seatac/seatac.H:27, from seatac/thr-search.C:1: seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/thr-loader.o -c seatac/thr-loader.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/thr-loader.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/thr-loader.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/thr-loader.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/thr-loader.C:5: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seatac/seatac.H:25, from seatac/thr-loader.C:5: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/thr-loader.C:5: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/thr-loader.C:5: seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", ^ In file included from seatac/seatac.H:27, from seatac/thr-loader.C:5: seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/thr-loader.C:5: seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ In file included from seatac/seatac.H:27, from seatac/thr-loader.C:5: seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ seatac/thr-loader.C: In function ‘void* loaderThread(void*)’: seatac/thr-loader.C:68:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/thr-deadlock.o -c seatac/thr-deadlock.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/thr-deadlock.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/thr-deadlock.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/thr-deadlock.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/seatac.H:20, from seatac/thr-deadlock.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seatac/seatac.H:25, from seatac/thr-deadlock.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/thr-deadlock.C:1: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/thr-deadlock.C:1: seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", ^ In file included from seatac/seatac.H:27, from seatac/thr-deadlock.C:1: seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27, from seatac/thr-deadlock.C:1: seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ In file included from seatac/seatac.H:27, from seatac/thr-deadlock.C:1: seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/hitMatrix-sort.o -c seatac/hitMatrix-sort.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from seatac/hitMatrix.H:8, from seatac/hitMatrix-sort.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/hitMatrix.H:8, from seatac/hitMatrix-sort.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/hitMatrix.H:8, from seatac/hitMatrix-sort.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seatac/hitMatrix.H:8, from seatac/hitMatrix-sort.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seatac/hitMatrix.H:9, from seatac/hitMatrix-sort.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from seatac/hitMatrix.H:10, from seatac/hitMatrix-sort.C:1: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); ^ In file included from seatac/hitMatrix.H:10, from seatac/hitMatrix-sort.C:1: seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", ^ In file included from seatac/hitMatrix-sort.C:1: seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ In file included from seatac/hitMatrix.H:10, from seatac/hitMatrix-sort.C:1: seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ In file included from seatac/hitMatrix-sort.C:1: seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-fasta.o -c /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-fasta.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-fasta.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-fasta.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-fasta.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-fasta.C:5: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-fasta.C:136:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromFastA()-- hashTable is "uint64FMT"MB\n", _hashTableWords >> 17); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-fasta.C:137:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromFastA()-- buckets is "uint64FMT"MB\n", _bucketsWords >> 17); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-fasta.C:139:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromFastA()-- counts is "uint64FMT"MB\n", _countsWords >> 17); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-fasta.C:239:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Compressed from "uint64FMT" to "uint64FMT" ("uint64FMT" bits)\n", ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-fasta.C:239:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Compressed from "uint64FMT" to "uint64FMT" ("uint64FMT" bits)\n", ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-fasta.C:239:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Compressed from "uint64FMT" to "uint64FMT" ("uint64FMT" bits)\n", ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.o -c /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C:5: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C:27:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "createFromMeryl()-- ERROR: requested merSize ("uint32FMT") is different than merSize in meryl database ("uint32FMT").\n", ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C:27:78: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "createFromMeryl()-- ERROR: requested merSize ("uint32FMT") is different than merSize in meryl database ("uint32FMT").\n", ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C:54:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "createFromMeryl()-- tableSizeInEntries "uint64FMT"\n", tableSizeInEntries); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C:55:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "createFromMeryl()-- count range "uint32FMT"-"uint32FMT"\n", lo, hi); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C:55:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "createFromMeryl()-- count range "uint32FMT"-"uint32FMT"\n", lo, hi); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C:104:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "createFromMeryl()-- numberOfMers "uint64FMT"\n", numberOfMers); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C:116:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromMeryl()-- Found "uint64FMT" mers between count of "uint32FMT" and "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C:116:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromMeryl()-- Found "uint64FMT" mers between count of "uint32FMT" and "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C:116:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromMeryl()-- Found "uint64FMT" mers between count of "uint32FMT" and "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C:135:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromMeryl()-- hashTable is "uint64FMT"MB\n", _hashTableWords >> 17); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C:136:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromMeryl()-- buckets is "uint64FMT"MB\n", _bucketsWords >> 17); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.C:138:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromMeryl()-- counts is "uint64FMT"MB\n", _countsWords >> 17); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-sequence.o -c /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-sequence.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-sequence.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-sequence.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-sequence.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-sequence.C:5: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-sequence.C:136:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromSequence()-- hashTable is "uint64FMT"MB\n", _hashTableWords >> 17); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-sequence.C:137:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromSequence()-- buckets is "uint64FMT"MB\n", _bucketsWords >> 17); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-sequence.C:139:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromSequence()-- counts is "uint64FMT"MB\n", _countsWords >> 17); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-sequence.C:239:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Compressed from "uint64FMT" to "uint64FMT" ("uint64FMT" bits)\n", ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-sequence.C:239:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Compressed from "uint64FMT" to "uint64FMT" ("uint64FMT" bits)\n", ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-sequence.C:239:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Compressed from "uint64FMT" to "uint64FMT" ("uint64FMT" bits)\n", ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libkmer/existDB-state.o -c /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:5: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:169:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "merSizeInBases: "uint32FMT"\n", _merSizeInBases); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:170:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "tableBits "uint32FMT"\n", 2 * _merSizeInBases - _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:172:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_hashTableWords "uint64FMT" ("uint64FMT" KB)\n", _hashTableWords, _hashTableWords >> 7); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:172:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_hashTableWords "uint64FMT" ("uint64FMT" KB)\n", _hashTableWords, _hashTableWords >> 7); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:173:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_bucketsWords "uint64FMT" ("uint64FMT" KB)\n", _bucketsWords, _bucketsWords >> 7); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:173:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_bucketsWords "uint64FMT" ("uint64FMT" KB)\n", _bucketsWords, _bucketsWords >> 7); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:174:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_countsWords "uint64FMT" ("uint64FMT" KB)\n", _countsWords, _countsWords >> 7); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:174:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_countsWords "uint64FMT" ("uint64FMT" KB)\n", _countsWords, _countsWords >> 7); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:176:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_shift1: "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:177:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_shift2 "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:178:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_mask1 "uint64HEX"\n", _mask1); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:179:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_mask2 "uint64HEX"\n", _mask2); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:183:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_hshWidth "uint32FMT"\n", _hshWidth); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:191:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_chkWidth "uint32FMT"\n", _chkWidth); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:199:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_cntWidth "uint32FMT"\n", _cntWidth); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C: In member function ‘bool existDB::loadState(const char*, bool, bool)’: /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:80:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(cigam, sizeof(char), 16, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:124:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_merSizeInBases, sizeof(uint32), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:125:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_shift1, sizeof(uint32), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:126:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_shift2, sizeof(uint32), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:127:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_mask1, sizeof(uint64), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:128:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_mask2, sizeof(uint64), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:129:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_hshWidth, sizeof(uint32), 1, F); // only valid if _compressedHash ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:130:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_chkWidth, sizeof(uint32), 1, F); // only valid if _compressedBucket ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:131:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_cntWidth, sizeof(uint32), 1, F); // only valid if _compressedCounts ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:133:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_hashTableWords, sizeof(uint64), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:134:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_bucketsWords, sizeof(uint64), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:135:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_countsWords, sizeof(uint64), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:148:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(_hashTable, sizeof(uint64), _hashTableWords, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:149:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(_buckets, sizeof(uint64), _bucketsWords, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/existDB-state.C:152:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(_counts, sizeof(uint64), _countsWords, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libkmer/existDB.o -c /<>/kmer-0~20150903+r2013/libkmer/existDB.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/existDB.H:7, from /<>/kmer-0~20150903+r2013/libkmer/existDB.C:5: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libkmer/existDB.C:44:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::existDB()-- Got "uint32FMT", expected "uint32FMT"\n", _merSizeInBases, merSize); ^ /<>/kmer-0~20150903+r2013/libkmer/existDB.C:44:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::existDB()-- Got "uint32FMT", expected "uint32FMT"\n", _merSizeInBases, merSize); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.o -c /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.C:2: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.C:22:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::get()-- Can't allocate space for more positions, requested "uint64FMT" uint64's.\n", posnMax); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.C:215:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Filtering out kmers less than "uint64FMT" and more than "uint64FMT"\n", lo, hi); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.C:215:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Filtering out kmers less than "uint64FMT" and more than "uint64FMT"\n", lo, hi); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.C:339:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Filtered "uint64FMT" kmers less than "uint64FMT"\n", loCount, lo); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.C:339:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Filtered "uint64FMT" kmers less than "uint64FMT"\n", loCount, lo); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.C:340:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Filtered "uint64FMT" kmers more than "uint64FMT"\n", hiCount, hi); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.C:340:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Filtered "uint64FMT" kmers more than "uint64FMT"\n", hiCount, hi); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.C:341:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Saved "uint64FMT" kmers with acceptable count\n", okCount); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.C: In member function ‘void positionDB::filter(uint64, uint64)’: /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.C:204:11: warning: unused variable ‘vv’ [-Wunused-variable] uint64 vv; ^~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libkmer/positionDB-dump.o -c /<>/kmer-0~20150903+r2013/libkmer/positionDB-dump.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:5, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-dump.C:4: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:5, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-dump.C:4: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:5, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-dump.C:4: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:5, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-dump.C:4: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/libkmer/positionDB-dump.C:4: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-dump.C:25:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "B "uint64FMT" "uint64FMT"-"uint64FMT"\n", h, st, ed); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-dump.C:25:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "B "uint64FMT" "uint64FMT"-"uint64FMT"\n", h, st, ed); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-dump.C:25:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "B "uint64FMT" "uint64FMT"-"uint64FMT"\n", h, st, ed); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-dump.C:32:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%c chk="uint64HEX" pos="uint64FMT" siz="uint64FMT, ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-dump.C:32:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%c chk="uint64HEX" pos="uint64FMT" siz="uint64FMT, ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-dump.C:32:52: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%c chk="uint64HEX" pos="uint64FMT" siz="uint64FMT, ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-dump.C:40:22: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, " "uint64FMT, getDecodedValue(_positions, pos, _posnWidth)); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.o -c /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:5, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:5, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:5, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:5, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:197:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "merSizeInBases: "uint32FMT"\n", _merSizeInBases); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:198:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "merSkipInBases: "uint32FMT"\n", _merSkipInBases); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:199:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "tableSizeInBits: "uint32FMT"\n", _tableSizeInBits); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:200:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "tableSizeInEntries: "uint64FMT"\n", _tableSizeInEntries); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:201:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "hashWidth: "uint32FMT"\n", _hashWidth); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:202:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "chckWidth: "uint32FMT"\n", _chckWidth); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:203:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "posnWidth: "uint32FMT"\n", _posnWidth); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:204:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "numberOfMers: "uint64FMT"\n", _numberOfMers); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:205:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "numberOfPositions: "uint64FMT"\n", _numberOfPositions); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:206:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "numberOfDistinct: "uint64FMT"\n", _numberOfDistinct); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:207:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "numberOfUnique: "uint64FMT"\n", _numberOfUnique); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:208:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "numberOfEntries: "uint64FMT"\n", _numberOfEntries); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:209:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "maximumEntries: "uint64FMT"\n", _maximumEntries); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C: In member function ‘void positionDB::saveState(const char*)’: /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:63:73: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] _hashTable_FW = (uint32 *)((_hashTable_FW) ? uint32ONE : uint32ZERO); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:37:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(F, magic, sizeof(char) * 16); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:39:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(F, faild, sizeof(char) * 16); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.C:95:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(F, magic, sizeof(char) * 16); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libkmer/positionDB-mismatch.o -c /<>/kmer-0~20150903+r2013/libkmer/positionDB-mismatch.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:5, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-mismatch.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:5, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-mismatch.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:5, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-mismatch.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:5, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-mismatch.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/libkmer/positionDB-mismatch.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-mismatch.C:324:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::getUpToNMismatches()-- Can't allocate space for initial positions, requested "uint64FMT" uint64's.\n", posnMax); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.o -c /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:5, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:5, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:5, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:5, from /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C:37:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: Bucket "uint64FMT" starts at "uint64FMT" ends at "uint64FMT"?\n", b, st, ed); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C:37:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: Bucket "uint64FMT" starts at "uint64FMT" ends at "uint64FMT"?\n", b, st, ed); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C:37:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: Bucket "uint64FMT" starts at "uint64FMT" ends at "uint64FMT"?\n", b, st, ed); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C:78:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: unset posn bucket="uint64FMT" t="int64FMT" le="uint32FMT"\n", b, t, le); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C:78:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: unset posn bucket="uint64FMT" t="int64FMT" le="uint32FMT"\n", b, t, le); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C:78:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: unset posn bucket="uint64FMT" t="int64FMT" le="uint32FMT"\n", b, t, le); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C:86:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMTW(4)"] chck="uint64HEX" posn="uint64FMT"\n", t, _sortedChck[t], _sortedPosn[t]); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C:86:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMTW(4)"] chck="uint64HEX" posn="uint64FMT"\n", t, _sortedChck[t], _sortedPosn[t]); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C:110:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: bucket="uint64FMT" t="uint32FMT" le="uint32FMT": "uint64HEX" > "uint64HEX"\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C:110:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: bucket="uint64FMT" t="uint32FMT" le="uint32FMT": "uint64HEX" > "uint64HEX"\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C:110:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: bucket="uint64FMT" t="uint32FMT" le="uint32FMT": "uint64HEX" > "uint64HEX"\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C:110:77: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: bucket="uint64FMT" t="uint32FMT" le="uint32FMT": "uint64HEX" > "uint64HEX"\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.C:110:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: bucket="uint64FMT" t="uint32FMT" le="uint32FMT": "uint64HEX" > "uint64HEX"\n", ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libkmer/positionDB.o -c /<>/kmer-0~20150903+r2013/libkmer/positionDB.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:7: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:46:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer size is wrong (found "uint32FMT", wanted "uint32FMT").\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:46:107: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer size is wrong (found "uint32FMT", wanted "uint32FMT").\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:52:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer skip is wrong (found "uint32FMT", wanted "uint32FMT").\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:52:107: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer skip is wrong (found "uint32FMT", wanted "uint32FMT").\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:58:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- Tried to read state from '%s', but max number of mismatches is wrong (found "uint32FMT", wanted "uint32FMT").\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:58:123: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- Tried to read state from '%s', but max number of mismatches is wrong (found "uint32FMT", wanted "uint32FMT").\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:127:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " sm = "uint64FMT"\n", sm); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:128:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " lg = "uint64FMT"\n", lg); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:129:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " merSize = "uint32FMT" bits\n", 2 * merSize); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:130:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " approxMers = "uint64FMT" mers\n", approxMers); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:131:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " posnWidth = "uint64FMT" bits\n", posnWidth); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:142:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "potential configurations for approximately "uint64FMT" "uint32FMT"-mers (posnW="uint64FMT").\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:142:77: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "potential configurations for approximately "uint64FMT" "uint32FMT"-mers (posnW="uint64FMT").\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:142:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "potential configurations for approximately "uint64FMT" "uint32FMT"-mers (posnW="uint64FMT").\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:200:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="uint64FMTW(2)" shifts="uint32FMTW(02)","uint32FMTW(02)" -- size %8.3fGB -- work %8.3f%s\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:200:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="uint64FMTW(2)" shifts="uint32FMTW(02)","uint32FMTW(02)" -- size %8.3fGB -- work %8.3f%s\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:200:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="uint64FMTW(2)" shifts="uint32FMTW(02)","uint32FMTW(02)" -- size %8.3fGB -- work %8.3f%s\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:217:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="uint32FMT" s1="uint32FMT" s2="uint32FMT" -- merSize="uint32FMT" bits + posnWidth="uint64FMT" bits (est "uint64FMT" mers) FINAL\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:217:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="uint32FMT" s1="uint32FMT" s2="uint32FMT" -- merSize="uint32FMT" bits + posnWidth="uint64FMT" bits (est "uint64FMT" mers) FINAL\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:217:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="uint32FMT" s1="uint32FMT" s2="uint32FMT" -- merSize="uint32FMT" bits + posnWidth="uint64FMT" bits (est "uint64FMT" mers) FINAL\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:217:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="uint32FMT" s1="uint32FMT" s2="uint32FMT" -- merSize="uint32FMT" bits + posnWidth="uint64FMT" bits (est "uint64FMT" mers) FINAL\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:217:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="uint32FMT" s1="uint32FMT" s2="uint32FMT" -- merSize="uint32FMT" bits + posnWidth="uint64FMT" bits (est "uint64FMT" mers) FINAL\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:217:122: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="uint32FMT" s1="uint32FMT" s2="uint32FMT" -- merSize="uint32FMT" bits + posnWidth="uint64FMT" bits (est "uint64FMT" mers) FINAL\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:326:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- bktAlloc = new uint64 ["uint64FMT"]\n", _tableSizeInEntries / 2 + 4); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:348:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated bucket size counting space with total size "uint64FMT" KB\n", _tableSizeInEntries >> 8); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:392:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Found "uint64FMT" mers (max position = "uint64FMT")\n", _numberOfMers, _numberOfPositions); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:392:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Found "uint64FMT" mers (max position = "uint64FMT")\n", _numberOfMers, _numberOfPositions); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:430:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "uint64FMT"KB for buckets ("uint64FMT" 64-bit words)\n", bucketsSpace >> 7, bucketsSpace); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:430:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "uint64FMT"KB for buckets ("uint64FMT" 64-bit words)\n", bucketsSpace >> 7, bucketsSpace); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:435:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- _countingBuckets = new uint64 ["uint64FMT"]\n", bucketsSpace); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:553:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Sorting and repacking buckets ("uint64FMT" buckets).\n", _tableSizeInEntries); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:565:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Found "uint64FMTW(12)" total mers\n" ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:566:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Found "uint64FMTW(12)" distinct mers\n" ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:567:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Found "uint64FMTW(12)" unique mers\n" ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:568:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Need "uint64FMT" non-unique position list entries ("uint64FMT" maximum count)\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:568:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Need "uint64FMT" non-unique position list entries ("uint64FMT" maximum count)\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:637:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "uint64FMTW(10)"KB for hash table ("uint64FMT" 64-bit words)\n", hs >> 7, hs); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:637:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "uint64FMTW(10)"KB for hash table ("uint64FMT" 64-bit words)\n", hs >> 7, hs); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:643:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- _hashTable_BP = new uint64 ["uint64FMT"]\n", hs); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:662:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Reusing bucket space; Have: "uint64FMT" Need: "uint64FMT" (64-bit words)\n", bucketsSpace, bs); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:662:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Reusing bucket space; Have: "uint64FMT" Need: "uint64FMT" (64-bit words)\n", bucketsSpace, bs); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:669:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "uint64FMTW(10)"KB for buckets ("uint64FMT" 64-bit words)\n", bs >> 7, bs); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:669:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "uint64FMTW(10)"KB for buckets ("uint64FMT" 64-bit words)\n", bs >> 7, bs); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:674:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- _buckets = new uint64 ["uint64FMT"]\n", bs); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:680:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "uint64FMTW(10)"KB for positions ("uint64FMT" 64-bit words)\n", ps >> 7, ps); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:680:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "uint64FMTW(10)"KB for positions ("uint64FMT" 64-bit words)\n", ps >> 7, ps); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:685:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- _positions = new uint64 ["uint64FMT"\n", ps); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:695:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Transferring to final structure ("uint64FMT" buckets).\n", _tableSizeInEntries); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:878:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- ERROR: Got position "uint64FMT", but only "uint64FMT" available!\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:878:78: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- ERROR: Got position "uint64FMT", but only "uint64FMT" available!\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:916:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Avail: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (64-bit words)\n", bs, ps); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:916:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Avail: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (64-bit words)\n", bs, ps); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:917:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Avail: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (entries)\n", _numberOfDistinct, _numberOfEntries); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:917:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Avail: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (entries)\n", _numberOfDistinct, _numberOfEntries); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:918:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Used: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (64-bit words)\n", currentBbit / 64, currentPbit / 64); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:918:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Used: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (64-bit words)\n", currentBbit / 64, currentPbit / 64); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:928:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Used: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (entries)\n", _numberOfDistinct, _numberOfEntries); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:928:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Used: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (entries)\n", _numberOfDistinct, _numberOfEntries); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:930:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Found "uint64FMTW(12)" total mers\n" ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:931:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Found "uint64FMTW(12)" distinct mers\n" ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:932:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Found "uint64FMTW(12)" unique mers\n" ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:933:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Need "uint64FMT" non-unique position list entries ("uint64FMT" maximum count)\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:933:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Need "uint64FMT" non-unique position list entries ("uint64FMT" maximum count)\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:955:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Rebuilding the hash table, from "uint32FMT" bits wide to "uint32FMT" bits wide.\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:955:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Rebuilding the hash table, from "uint32FMT" bits wide to "uint32FMT" bits wide.\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:990:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Loading "uint64FMT" mercounts.\n", counts->numberOfDistinctMers()); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:1013:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Loaded "uint64FMT" mercounts; largest is "uint64FMT".\n", countsLoaded, largestMerylCount); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:1013:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Loaded "uint64FMT" mercounts; largest is "uint64FMT".\n", countsLoaded, largestMerylCount); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:1017:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Compress sizes from "uint32FMT" bits to "uint32FMT" bits.\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:1017:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Compress sizes from "uint32FMT" bits to "uint32FMT" bits.\n", ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C: In member function ‘void positionDB::build(merStream*, existDB*, existDB*, merylStreamReader*, uint32, uint32, bool)’: /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:324:17: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:433:17: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:641:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:672:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ /<>/kmer-0~20150903+r2013/libkmer/positionDB.C:683:17: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ rm -f /<>/kmer-0~20150903+r2013/libkmer/libkmer.a && ar ruvs /<>/kmer-0~20150903+r2013/libkmer/libkmer.a /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-fasta.o /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.o /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-sequence.o /<>/kmer-0~20150903+r2013/libkmer/existDB-state.o /<>/kmer-0~20150903+r2013/libkmer/existDB.o /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.o /<>/kmer-0~20150903+r2013/libkmer/positionDB-dump.o /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.o /<>/kmer-0~20150903+r2013/libkmer/positionDB-mismatch.o /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.o /<>/kmer-0~20150903+r2013/libkmer/positionDB.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/kmer-0~20150903+r2013/libkmer/libkmer.a a - /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-fasta.o a - /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-meryl.o a - /<>/kmer-0~20150903+r2013/libkmer/existDB-create-from-sequence.o a - /<>/kmer-0~20150903+r2013/libkmer/existDB-state.o a - /<>/kmer-0~20150903+r2013/libkmer/existDB.o a - /<>/kmer-0~20150903+r2013/libkmer/positionDB-access.o a - /<>/kmer-0~20150903+r2013/libkmer/positionDB-dump.o a - /<>/kmer-0~20150903+r2013/libkmer/positionDB-file.o a - /<>/kmer-0~20150903+r2013/libkmer/positionDB-mismatch.o a - /<>/kmer-0~20150903+r2013/libkmer/positionDB-sort.o a - /<>/kmer-0~20150903+r2013/libkmer/positionDB.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.o -c /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.H:4, from /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.H:4, from /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.H:4, from /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.H:4, from /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C:72:2: warning: #warning not checking pmagic [-Wcpp] #warning not checking pmagic ^~~~~~~ /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C:134:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "merylStreamReader()-- ERROR: User requested mersize "uint32FMT" but '%s' is mersize "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C:134:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "merylStreamReader()-- ERROR: User requested mersize "uint32FMT" but '%s' is mersize "uint32FMT"\n", ^ /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C:6:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] static char *ImagicV = "merylStreamIv03\n"; ^~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C:7:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] static char *ImagicX = "merylStreamIvXX\n"; ^~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C:8:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] static char *DmagicV = "merylStreamDv03\n"; ^~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C:9:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] static char *DmagicX = "merylStreamDvXX\n"; ^~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C:10:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] static char *PmagicV = "merylStreamPv03\n"; ^~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C:11:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] static char *PmagicX = "merylStreamPvXX\n"; ^~~~~~~~~~~~~~~~~~~ /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C: In constructor ‘merylStreamReader::merylStreamReader(const char*, uint32)’: /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C:42:11: warning: variable ‘Pmagic’ set but not used [-Wunused-but-set-variable] char Pmagic[16] = {0}; ^~~~~~ /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C: In member function ‘void merylStreamWriter::addMer(uint64, uint32, uint64, uint32, uint32, uint32*)’: /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.C:469:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] (prefix <= _thisMerPre) && (mer < _thisMerMer)) { ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ rm -f /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a && ar ruvs /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a a - /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.o g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o seatac/seatac seatac/seatac.o seatac/configuration.o seatac/encodedQuery.o seatac/hitMatrix.o seatac/thr-search.o seatac/thr-loader.o seatac/thr-deadlock.o seatac/hitMatrix-sort.o /<>/kmer-0~20150903+r2013/libkmer/libkmer.a /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/heavychains-driver.o -c seatac/heavychains-driver.C In file included from seatac/heavychains.H:11, from seatac/heavychains-driver.C:24: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from seatac/heavychains-driver.C:24: seatac/heavychains.H: In member function ‘double DPTree::matchScore(DPTree::kd_node, Match&)’: seatac/heavychains.H:374:19: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if ( (flo.X() && node[flo.intv].lo <= p.xlo || ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/heavychains.o -c seatac/heavychains.C In file included from seatac/heavychains.H:11, from seatac/heavychains.C:22: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ seatac/heavychains.C:96:22: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr,"HeavyChains: filtering strands "uint32FMT" "uint32FMT" "uint32FMT"\n", iid1, iid2, Plen); ^ seatac/heavychains.C:96:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr,"HeavyChains: filtering strands "uint32FMT" "uint32FMT" "uint32FMT"\n", iid1, iid2, Plen); ^ seatac/heavychains.C:96:76: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr,"HeavyChains: filtering strands "uint32FMT" "uint32FMT" "uint32FMT"\n", iid1, iid2, Plen); ^ seatac/heavychains.C:164:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "heavychains: out "uint32FMTW(8)" %8d %8d -- "uint32FMTW(8)" %8d %8d\n", ^ seatac/heavychains.C:164:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "heavychains: out "uint32FMTW(8)" %8d %8d -- "uint32FMTW(8)" %8d %8d\n", ^ seatac/heavychains.C:169:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(outF, "M x H"uint64FMT" . %s:"uint32FMT" %d %d %d %s:"uint32FMT" %d %d %d > /hf=%.1f /hr=%.1f\n", ^ seatac/heavychains.C:169:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(outF, "M x H"uint64FMT" . %s:"uint32FMT" %d %d %d %s:"uint32FMT" %d %d %d > /hf=%.1f /hr=%.1f\n", ^ seatac/heavychains.C:169:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(outF, "M x H"uint64FMT" . %s:"uint32FMT" %d %d %d %s:"uint32FMT" %d %d %d > /hf=%.1f /hr=%.1f\n", ^ seatac/heavychains.C:186:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HeavyChains: finished strands "uint32FMTW(8)" "uint32FMTW(8)" maxlen1=%f maxlen2=%f maxScoreFwd=%f maxScoreRef=%f\n", ^ seatac/heavychains.C:186:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HeavyChains: finished strands "uint32FMTW(8)" "uint32FMTW(8)" maxlen1=%f maxlen2=%f maxScoreFwd=%f maxScoreRef=%f\n", ^ In file included from seatac/heavychains.C:22: seatac/heavychains.H: In member function ‘double DPTree::matchScore(DPTree::kd_node, Match&)’: seatac/heavychains.H:374:19: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if ( (flo.X() && node[flo.intv].lo <= p.xlo || ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o seatac/heavychains seatac/heavychains-driver.o seatac/heavychains.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/filter-nop.o -c seatac/filter-nop.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from seatac/filter-nop.C:9: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from seatac/filter-nop.C:10: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from seatac/filter-nop.C:10: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from seatac/filter-nop.C:10: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ seatac/filter-nop.C:67:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filter-nop.C:67:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filter-nop.C:67:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filter-nop.C:67:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filter-nop.C:67:78: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filter-nop.C:67:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filter-nop.C:67:102: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", ^ seatac/filter-nop.C: In function ‘void* construct(char*)’: seatac/filter-nop.C:116:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] char *seq1 = "UNK"; ^~~~~ seatac/filter-nop.C:117:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] char *seq2 = "UNK"; ^~~~~ rm -f seatac/filter-nop.so && g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -o seatac/filter-nop.so seatac/filter-nop.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/filter-heavychains.o -c seatac/filter-heavychains.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from seatac/filter-heavychains.C:24: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from seatac/filter-heavychains.C:24: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from seatac/filter-heavychains.C:24: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from seatac/filter-heavychains.C:24: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seatac/filter-heavychains.C:25: seatac/heavychains.H: In member function ‘double DPTree::matchScore(DPTree::kd_node, Match&)’: seatac/heavychains.H:374:19: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if ( (flo.X() && node[flo.intv].lo <= p.xlo || ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f seatac/filter-heavychains.so && g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -o seatac/filter-heavychains.so seatac/filter-heavychains.o seatac/heavychains.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/leaff.o -c leaff/leaff.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from leaff/leaff.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from leaff/leaff.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from leaff/leaff.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from leaff/leaff.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ leaff/leaff.C:311:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "WARNING: Didn't find sequence with iid '"uint32FMT"'\n", sid); ^ leaff/leaff.C:400:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "G\tseq\t%s:"uint32FMT"\t"uint32FMT"\t%s\n", ^ leaff/leaff.C:400:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "G\tseq\t%s:"uint32FMT"\t"uint32FMT"\t%s\n", ^ leaff/leaff.C:469:22: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(def, "random"uint32FMTW(06), i); ^ leaff/leaff.C:727:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Couldn't read "uint64FMT" bytes from '%s': %s\n", ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/blocks.o -c leaff/blocks.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from leaff/blocks.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from leaff/blocks.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from leaff/blocks.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from leaff/blocks.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ leaff/blocks.C:32:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ leaff/blocks.C:32:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ leaff/blocks.C:32:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ leaff/blocks.C:32:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ leaff/blocks.C:40:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ leaff/blocks.C:40:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ leaff/blocks.C:40:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ leaff/blocks.C:40:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ leaff/blocks.C:42:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, ". "uint32FMT" "uint32FMT" "uint32FMT"\n", s, pos, uint32ZERO); ^ leaff/blocks.C:42:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, ". "uint32FMT" "uint32FMT" "uint32FMT"\n", s, pos, uint32ZERO); ^ leaff/blocks.C:42:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, ". "uint32FMT" "uint32FMT" "uint32FMT"\n", s, pos, uint32ZERO); ^ leaff/blocks.C: In function ‘void dumpBlocks(char*)’: leaff/blocks.C:7:16: warning: unused variable ‘S’ [-Wunused-variable] seqInCore *S = 0L; ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/dups.o -c leaff/dups.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from leaff/dups.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from leaff/dups.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from leaff/dups.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from leaff/dups.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ leaff/dups.C:26:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT" <-> "uint32FMT"\n", sa->getIID(), sb->getIID()); ^ leaff/dups.C:28:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "COLLISION DETECTED BETWEEN %s:"uint32FMT" AND %s:"uint32FMT"!\nPLEASE REPORT THIS TO bri@walenz.org!\n", ^ leaff/dups.C:28:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "COLLISION DETECTED BETWEEN %s:"uint32FMT" AND %s:"uint32FMT"!\nPLEASE REPORT THIS TO bri@walenz.org!\n", ^ leaff/dups.C:52:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Internal error: found two copies of the same sequence iid ("uint32FMT")!\n", result[idx].i); ^ leaff/dups.C:60:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT":%s\n"uint32FMT":%s\n\n", ^ leaff/dups.C:64:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "COLLISION DETECTED BETWEEN IID "uint32FMT" AND "uint32FMT"!\nPLEASE REPORT THIS TO bri@walenz.org!\n", ^ leaff/dups.C:64:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "COLLISION DETECTED BETWEEN IID "uint32FMT" AND "uint32FMT"!\nPLEASE REPORT THIS TO bri@walenz.org!\n", ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/gc.o -c leaff/gc.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from leaff/gc.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from leaff/gc.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from leaff/gc.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from leaff/gc.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ leaff/gc.C:68:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT"\t"uint32FMT"\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\n", ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/partition.o -c leaff/partition.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from leaff/partition.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from leaff/partition.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from leaff/partition.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from leaff/partition.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ leaff/partition.C:55:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: Failed to partition "uint32FMT"\n", i); ^ leaff/partition.C:62:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(filename, "%s-"uint32FMTW(03)".fasta", prefix, o); ^ leaff/partition.C:77:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Huh? '%s' "uint32FMT" != "uint32FMT"\n", S->header(), S->sequenceLength(), p[i].length); ^ leaff/partition.C:77:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Huh? '%s' "uint32FMT" != "uint32FMT"\n", S->header(), S->sequenceLength(), p[i].length); ^ leaff/partition.C:96:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT"]("uint32FMT")", o, sizeP); ^ leaff/partition.C:99:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, " "uint32FMT"("uint32FMT")", p[i].index, p[i].length); ^ leaff/partition.C:99:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, " "uint32FMT"("uint32FMT")", p[i].index, p[i].length); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/simseq.o -c leaff/simseq.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from leaff/simseq.C:7: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/stats.o -c leaff/stats.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from leaff/stats.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from leaff/stats.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from leaff/stats.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from leaff/stats.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ leaff/stats.C:110:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "numSeqs "uint32FMT"\n", numSeq); ^ leaff/stats.C:112:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "SPAN (smallest "uint32FMT" largest "uint32FMT")\n", Ls[numSeq-1], Ls[0]); ^ leaff/stats.C:112:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "SPAN (smallest "uint32FMT" largest "uint32FMT")\n", Ls[numSeq-1], Ls[0]); ^ leaff/stats.C:114:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "n"uint32FMT" "uint32FMT" at index "uint32FMT"\n", 10 * i, n50s[i], l50s[i]); ^ leaff/stats.C:114:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "n"uint32FMT" "uint32FMT" at index "uint32FMT"\n", 10 * i, n50s[i], l50s[i]); ^ leaff/stats.C:114:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "n"uint32FMT" "uint32FMT" at index "uint32FMT"\n", 10 * i, n50s[i], l50s[i]); ^ leaff/stats.C:115:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "totLen "uint64FMTW(10)"\n", Ss); ^ leaff/stats.C:116:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "refLen "uint64FMTW(10)"\n", Rs); ^ leaff/stats.C:118:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "BASES (smallest "uint32FMT" largest "uint32FMT")\n", Lb[numSeq-1], Lb[0]); ^ leaff/stats.C:118:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "BASES (smallest "uint32FMT" largest "uint32FMT")\n", Lb[numSeq-1], Lb[0]); ^ leaff/stats.C:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "n"uint32FMT" "uint32FMT" at index "uint32FMT"\n", 10 * i, n50b[i], l50b[i]); ^ leaff/stats.C:120:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "n"uint32FMT" "uint32FMT" at index "uint32FMT"\n", 10 * i, n50b[i], l50b[i]); ^ leaff/stats.C:120:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "n"uint32FMT" "uint32FMT" at index "uint32FMT"\n", 10 * i, n50b[i], l50b[i]); ^ leaff/stats.C:121:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "totLen "uint64FMTW(10)"\n", Sb); ^ leaff/stats.C:122:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "refLen "uint64FMTW(10)"\n", Rb); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o leaff/leaff leaff/leaff.o leaff/blocks.o leaff/dups.o leaff/gc.o leaff/partition.o leaff/simseq.o leaff/stats.o /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/meryl.o -c meryl/meryl.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from meryl/meryl.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/meryl.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/meryl.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/meryl.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/args.o -c meryl/args.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from meryl/args.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/args.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/args.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/args.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ meryl/args.C:26:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "writeString()-- Failed to write string of length "uint32FMT": %s\n", len, strerror(errno)); ^ meryl/args.C: In function ‘char* readString(FILE*)’: meryl/args.C:40:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&len, sizeof(uint32), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/args.C:50:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(str, sizeof(char), len, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/args.C: In constructor ‘merylArgs::merylArgs(const char*)’: meryl/args.C:513:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(magic, sizeof(char), 16, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/args.C:521:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(this, sizeof(merylArgs), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/binaryOp.o -c meryl/binaryOp.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from meryl/meryl.H:4, from meryl/binaryOp.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/meryl.H:4, from meryl/binaryOp.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/meryl.H:4, from meryl/binaryOp.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/meryl.H:4, from meryl/binaryOp.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ meryl/binaryOp.C:43:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR - mersize of '%s' is "uint32FMT"\n", args->mergeFiles[0], A->merSize()); ^ meryl/binaryOp.C:44:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR - mersize of '%s' is "uint32FMT"\n", args->mergeFiles[1], B->merSize()); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/build.o -c meryl/build.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from meryl/build.C:7: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/build.C:7: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/build.C:7: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/build.C:7: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ meryl/build.C:153:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(cmd, "qsub -t 1-"uint64FMT" -cwd -b n -j y -o %s-count-\\$TASK_ID.err %s -N mc%s %s-count.sh", ^ meryl/build.C:156:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(cmd, "qsub -t 1-"uint64FMT" -cwd -b n -j y -o %s-count-\\$TASK_ID.err -N mc%s %s-count.sh", ^ meryl/build.C:238:2: warning: #warning not submitting prepareBatch to grid [-Wcpp] #warning not submitting prepareBatch to grid ^~~~~~~ meryl/build.C:293:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " numMersActual = "uint64FMT"\n", args->numMersActual); ^ meryl/build.C:294:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " mersPerBatch = "uint64FMT"\n", args->mersPerBatch); ^ meryl/build.C:295:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " basesPerBatch = "uint64FMT"\n", args->basesPerBatch); ^ meryl/build.C:296:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " numBuckets = "uint64FMT" ("uint32FMT" bits)\n", args->numBuckets, args->numBuckets_log2); ^ meryl/build.C:296:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " numBuckets = "uint64FMT" ("uint32FMT" bits)\n", args->numBuckets, args->numBuckets_log2); ^ meryl/build.C:297:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " bucketPointerWidth = "uint32FMT"\n", args->bucketPointerWidth); ^ meryl/build.C:298:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " merDataWidth = "uint32FMT"\n", args->merDataWidth); ^ meryl/build.C:305:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", ^ meryl/build.C:305:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", ^ meryl/build.C:305:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", ^ meryl/build.C:305:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", ^ meryl/build.C:310:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", ^ meryl/build.C:310:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", ^ meryl/build.C:310:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", ^ meryl/build.C:310:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", ^ meryl/build.C:314:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " numMersActual = "uint64FMT"\n", args->numMersActual); ^ meryl/build.C:315:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " mersPerBatch = "uint64FMT"\n", args->mersPerBatch); ^ meryl/build.C:316:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " basesPerBatch = "uint64FMT"\n", args->basesPerBatch); ^ meryl/build.C:317:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " numBuckets = "uint64FMT" ("uint32FMT" bits)\n", args->numBuckets, args->numBuckets_log2); ^ meryl/build.C:317:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " numBuckets = "uint64FMT" ("uint32FMT" bits)\n", args->numBuckets, args->numBuckets_log2); ^ meryl/build.C:318:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " bucketPointerWidth = "uint32FMT"\n", args->bucketPointerWidth); ^ meryl/build.C:319:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " merDataWidth = "uint32FMT"\n", args->merDataWidth); ^ meryl/build.C:342:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(filename, "%s.batch"uint64FMT".mcdat", args->outputFile, segment); ^ meryl/build.C:346:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Found result for batch "uint64FMT" in %s.\n", segment, filename); ^ meryl/build.C:352:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Computing segment "uint64FMT" of "uint64FMT".\n", segment+1, args->segmentLimit); ^ meryl/build.C:352:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Computing segment "uint64FMT" of "uint64FMT".\n", segment+1, args->segmentLimit); ^ meryl/build.C:365:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocating "uint64FMT"MB for mer storage ("uint32FMT" bits wide).\n", ^ meryl/build.C:365:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocating "uint64FMT"MB for mer storage ("uint32FMT" bits wide).\n", ^ meryl/build.C:384:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocating "uint64FMT"MB for mer position storage.\n", ^ meryl/build.C:390:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocating "uint64FMT"MB for bucket pointer table ("uint32FMT" bits wide).\n", ^ meryl/build.C:390:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocating "uint64FMT"MB for bucket pointer table ("uint32FMT" bits wide).\n", ^ meryl/build.C:396:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocating "uint64FMT"MB for counting the size of each bucket.\n", args->numBuckets >> 18); ^ meryl/build.C:477:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Releasing "uint64FMT"MB from counting the size of each bucket.\n", args->numBuckets >> 18); ^ meryl/build.C:532:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(batchOutputFile, "%s.batch"uint64FMT, args->outputFile, segment); ^ meryl/build.C:552:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: In segment "uint64FMT"\n", segment); ^ meryl/build.C:553:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: Bucket "uint64FMT" (out of "uint64FMT") ends before it starts!\n", ^ meryl/build.C:553:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: Bucket "uint64FMT" (out of "uint64FMT") ends before it starts!\n", ^ meryl/build.C:555:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: start="uint64FMT"\n", st); ^ meryl/build.C:556:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: end ="uint64FMT"\n", ed); ^ meryl/build.C:561:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: In segment "uint64FMT"\n", segment); ^ meryl/build.C:562:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: Bucket "uint64FMT" (out of "uint64FMT") is HUGE!\n", ^ meryl/build.C:562:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: Bucket "uint64FMT" (out of "uint64FMT") is HUGE!\n", ^ meryl/build.C:564:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: start="uint64FMT"\n", st); ^ meryl/build.C:565:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: end ="uint64FMT"\n", ed); ^ meryl/build.C:667:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Segment "uint64FMT" finished.\n", segment); ^ meryl/build.C:705:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s -countbatch "uint64FMT" -o %s\n", args->execName, s, args->outputFile); ^ meryl/build.C:783:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(argv[argc], "%s.batch"uint32FMT, args->outputFile, i); ^ meryl/build.C:807:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(filename, "%s.batch"uint32FMT".mcidx", args->outputFile, i); ^ meryl/build.C:809:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(filename, "%s.batch"uint32FMT".mcdat", args->outputFile, i); ^ meryl/build.C:811:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(filename, "%s.batch"uint32FMT".mcpos", args->outputFile, i); ^ meryl/build.C: In function ‘void prepareBatch(merylArgs*)’: meryl/build.C:310:23: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 4 has type ‘uint64’ {aka ‘long unsigned int’} [-Wformat=] fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/build.C:312:15: estimateMemory(args->merSize, args->numMersActual, args->positionsEnabled)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/build.C:310:23: warning: format ‘%lu’ expects a matching ‘long unsigned int’ argument [-Wformat=] meryl/build.C:310:23: warning: format ‘%lu’ expects a matching ‘long unsigned int’ argument [-Wformat=] meryl/build.C: In function ‘void runSegment(merylArgs*, uint64)’: meryl/build.C:585:59: warning: ‘void bzero(void*, size_t)’ clearing an object of type ‘class sortedList_t’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] bzero(sortedList, sizeof(sortedList_t) * sortedListLen); ^ meryl/build.C:26:7: note: ‘class sortedList_t’ declared here class sortedList_t { ^~~~~~~~~~~~ meryl/build.C:412:8: warning: unused variable ‘mstring’ [-Wunused-variable] char mstring[256]; ^~~~~~~ meryl/build.C: In function ‘void build(merylArgs*)’: meryl/build.C:769:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] arga[argc] = false; argv[argc++] = "meryl-build-merge"; ^~~~~~~~~~~~~~~~~~~ meryl/build.C:770:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] arga[argc] = false; argv[argc++] = "-M"; ^~~~ meryl/build.C:771:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] arga[argc] = false; argv[argc++] = "merge"; ^~~~~~~ meryl/build.C:775:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] argv[argc++] = "-v"; ^~~~ meryl/build.C:780:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] argv[argc++] = "-s"; ^~~~ meryl/build.C:787:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] arga[argc] = false; argv[argc++] = "-o"; ^~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/build-threads.o -c meryl/build-threads.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from meryl/build-threads.C:7: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/build-threads.C:7: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/build-threads.C:7: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/build-threads.C:7: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/dump.o -c meryl/dump.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from meryl/meryl.H:4, from meryl/dump.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/meryl.H:4, from meryl/dump.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/meryl.H:4, from meryl/dump.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/meryl.H:4, from meryl/dump.C:5: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ meryl/dump.C:17:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, ">"uint64FMT"\n%s\n", ^ meryl/dump.C:35:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, ">"uint64FMT, M->theCount()); ^ meryl/dump.C:37:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, " "uint32FMT, M->getPosition(i)); ^ meryl/dump.C:50:2: warning: #warning make this a test [-Wcpp] #warning make this a test ^~~~~~~ meryl/dump.C:72:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Found "uint64FMT" mers.\n", M->numberOfTotalMers()); ^ meryl/dump.C:73:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Found "uint64FMT" distinct mers.\n", M->numberOfDistinctMers()); ^ meryl/dump.C:74:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Found "uint64FMT" unique mers.\n", M->numberOfUniqueMers()); ^ meryl/dump.C:87:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Found "uint64FMT" mers.\n", M->numberOfTotalMers()); ^ meryl/dump.C:88:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Found "uint64FMT" distinct mers.\n", M->numberOfDistinctMers()); ^ meryl/dump.C:89:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Found "uint64FMT" unique mers.\n", M->numberOfUniqueMers()); ^ meryl/dump.C:91:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Largest mercount is "uint64FMT"; "uint64FMT" mers are too big for histogram.\n", ^ meryl/dump.C:91:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Largest mercount is "uint64FMT"; "uint64FMT" mers are too big for histogram.\n", ^ meryl/dump.C:101:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT"\t"uint64FMT"\t%.4f\t%.4f\n", ^ meryl/dump.C:148:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, uint32FMT"\t"uint64FMT"\n", d, hist[d]); ^ meryl/dump.C:151:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "huge\t"uint64FMT"\n", histHuge); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/estimate.o -c meryl/estimate.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from meryl/estimate.C:4: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/estimate.C:4: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/estimate.C:4: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/estimate.C:4: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ meryl/estimate.C:54:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Can fit "uint64FMT" mers into table with prefix of "uint64FMT" bits, using %.3fMB (%.3fMB for positions)\n", ^ meryl/estimate.C:54:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Can fit "uint64FMT" mers into table with prefix of "uint64FMT" bits, using %.3fMB (%.3fMB for positions)\n", ^ meryl/estimate.C:162:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, uint64FMT" "uint32FMT"-mers can be computed using "uint64FMT"MB memory.\n", ^ meryl/estimate.C:162:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, uint64FMT" "uint32FMT"-mers can be computed using "uint64FMT"MB memory.\n", ^ meryl/estimate.C: In function ‘uint64 estimateMemory(uint32, uint64, bool)’: meryl/estimate.C:77:13: warning: unused variable ‘N’ [-Wunused-variable] uint64 N = logBaseTwo64(numMers); // Width of the bucket pointer table ^ meryl/estimate.C:73:11: warning: variable ‘tMin’ set but not used [-Wunused-but-set-variable] uint64 tMin = tMax; ^~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/merge.o -c meryl/merge.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from meryl/meryl.H:4, from meryl/merge.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/meryl.H:4, from meryl/merge.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/meryl.H:4, from meryl/merge.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/meryl.H:4, from meryl/merge.C:5: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ meryl/merge.C:14:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR - must have at least two databases (you gave "uint32FMT")!\n", args->mergeFilesLen); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/unaryOp.o -c meryl/unaryOp.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from meryl/meryl.H:4, from meryl/unaryOp.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/meryl.H:4, from meryl/unaryOp.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/meryl.H:4, from meryl/unaryOp.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/meryl.H:4, from meryl/unaryOp.C:5: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ rm -f meryl/libmerylguts.a && ar ruvs meryl/libmerylguts.a meryl/args.o meryl/binaryOp.o meryl/build.o meryl/build-threads.o meryl/dump.o meryl/estimate.o meryl/merge.o meryl/unaryOp.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating meryl/libmerylguts.a a - meryl/args.o a - meryl/binaryOp.o a - meryl/build.o a - meryl/build-threads.o a - meryl/dump.o a - meryl/estimate.o a - meryl/merge.o a - meryl/unaryOp.o g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o meryl/meryl meryl/meryl.o meryl/libmerylguts.a /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/simple.o -c meryl/simple.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from meryl/simple.C:8: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/simple.C:8: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/simple.C:8: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/simple.C:8: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ meryl/simple.C:98:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Guessing "uint64FMT" mers in input '%s'\n", numMers, inName); ^ meryl/simple.C:99:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Allocating "uint64FMT"MB for mer storage.\n", numMers * 8 >> 20); ^ meryl/simple.C:129:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Found "uint64FMT" mers in input '%s'\n", theMersLen, inName); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o meryl/simple meryl/simple.o /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/mapMers.o -c meryl/mapMers.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from meryl/mapMers.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/mapMers.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/mapMers.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/mapMers.C:5: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ meryl/mapMers.C:135:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" ^ meryl/mapMers.C:135:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" ^ meryl/mapMers.C:136:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" ^ meryl/mapMers.C:136:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" ^ meryl/mapMers.C:136:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" ^ meryl/mapMers.C:136:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" ^ meryl/mapMers.C:136:76: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" ^ meryl/mapMers.C:136:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" ^ meryl/mapMers.C:136:102: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" ^ meryl/mapMers.C:137:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", ^ meryl/mapMers.C:137:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", ^ meryl/mapMers.C:137:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", ^ meryl/mapMers.C:137:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", ^ meryl/mapMers.C:137:76: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", ^ meryl/mapMers.C:137:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", ^ meryl/mapMers.C:137:102: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", ^ meryl/mapMers.C:165:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", S->header(), beg, end+merSize, end+merSize - beg); ^ meryl/mapMers.C:165:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", S->header(), beg, end+merSize, end+merSize - beg); ^ meryl/mapMers.C:165:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", S->header(), beg, end+merSize, end+merSize - beg); ^ meryl/mapMers.C:171:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint64FMT"\tuncovered\n", S->header(), MS->thePositionInSequence()); ^ meryl/mapMers.C:176:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", S->header(), beg, end+merSize, end+merSize - beg); ^ meryl/mapMers.C:176:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", S->header(), beg, end+merSize, end+merSize - beg); ^ meryl/mapMers.C:176:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", S->header(), beg, end+merSize, end+merSize - beg); ^ meryl/mapMers.C:178:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "numCovReg: "uint64FMT"\n", numCovReg); ^ meryl/mapMers.C:179:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "lenCovReg: "uint64FMT"\n", lenCovReg); ^ meryl/mapMers.C:193:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", ^ meryl/mapMers.C:193:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", ^ meryl/mapMers.C:193:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", ^ meryl/mapMers.C:193:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", ^ meryl/mapMers.C:193:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", ^ meryl/mapMers.C: In function ‘int main(int, char**)’: meryl/mapMers.C:21:13: warning: variable ‘beVerbose’ set but not used [-Wunused-but-set-variable] bool beVerbose = false; ^~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o meryl/mapMers meryl/mapMers.o /<>/kmer-0~20150903+r2013/libkmer/libkmer.a /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/mapMers-depth.o -c meryl/mapMers-depth.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from meryl/mapMers-depth.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/mapMers-depth.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/mapMers-depth.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from meryl/mapMers-depth.C:5: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o meryl/mapMers-depth meryl/mapMers-depth.o /<>/kmer-0~20150903+r2013/libkmer/libkmer.a /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/kmer-mask.o -c meryl/kmer-mask.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from meryl/kmer-mask.C:4: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from meryl/kmer-mask.C:4: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from meryl/kmer-mask.C:4: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from meryl/kmer-mask.C:4: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ meryl/kmer-mask.C:754:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aClean "FW"\n", g->thresholdCounts[0][0]); ^ meryl/kmer-mask.C:755:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aMurky "FW"\n", g->thresholdCounts[1][0]); ^ meryl/kmer-mask.C:756:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aMatch "FW"\n", g->thresholdCounts[2][0]); ^ meryl/kmer-mask.C:757:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aMixed "FW"\n", g->thresholdCounts[3][0]); ^ meryl/kmer-mask.C:760:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aClean "FW" "FW" "FW" "FW"\n", g->thresholdCounts[0][0], g->thresholdCounts[0][1], g->thresholdCounts[0][2], g->thresholdCounts[0][3]); ^ meryl/kmer-mask.C:760:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aClean "FW" "FW" "FW" "FW"\n", g->thresholdCounts[0][0], g->thresholdCounts[0][1], g->thresholdCounts[0][2], g->thresholdCounts[0][3]); ^ meryl/kmer-mask.C:760:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aClean "FW" "FW" "FW" "FW"\n", g->thresholdCounts[0][0], g->thresholdCounts[0][1], g->thresholdCounts[0][2], g->thresholdCounts[0][3]); ^ meryl/kmer-mask.C:760:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aClean "FW" "FW" "FW" "FW"\n", g->thresholdCounts[0][0], g->thresholdCounts[0][1], g->thresholdCounts[0][2], g->thresholdCounts[0][3]); ^ meryl/kmer-mask.C:761:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aMurky "FW" "FW" "FW" "FW"\n", g->thresholdCounts[1][0], g->thresholdCounts[1][1], g->thresholdCounts[1][2], g->thresholdCounts[1][3]); ^ meryl/kmer-mask.C:761:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aMurky "FW" "FW" "FW" "FW"\n", g->thresholdCounts[1][0], g->thresholdCounts[1][1], g->thresholdCounts[1][2], g->thresholdCounts[1][3]); ^ meryl/kmer-mask.C:761:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aMurky "FW" "FW" "FW" "FW"\n", g->thresholdCounts[1][0], g->thresholdCounts[1][1], g->thresholdCounts[1][2], g->thresholdCounts[1][3]); ^ meryl/kmer-mask.C:761:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aMurky "FW" "FW" "FW" "FW"\n", g->thresholdCounts[1][0], g->thresholdCounts[1][1], g->thresholdCounts[1][2], g->thresholdCounts[1][3]); ^ meryl/kmer-mask.C:762:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aMatch "FW" "FW" "FW" "FW"\n", g->thresholdCounts[2][0], g->thresholdCounts[2][1], g->thresholdCounts[2][2], g->thresholdCounts[2][3]); ^ meryl/kmer-mask.C:762:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aMatch "FW" "FW" "FW" "FW"\n", g->thresholdCounts[2][0], g->thresholdCounts[2][1], g->thresholdCounts[2][2], g->thresholdCounts[2][3]); ^ meryl/kmer-mask.C:762:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aMatch "FW" "FW" "FW" "FW"\n", g->thresholdCounts[2][0], g->thresholdCounts[2][1], g->thresholdCounts[2][2], g->thresholdCounts[2][3]); ^ meryl/kmer-mask.C:762:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aMatch "FW" "FW" "FW" "FW"\n", g->thresholdCounts[2][0], g->thresholdCounts[2][1], g->thresholdCounts[2][2], g->thresholdCounts[2][3]); ^ meryl/kmer-mask.C:763:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aMixed "FW" "FW" "FW" "FW"\n", g->thresholdCounts[3][0], g->thresholdCounts[3][1], g->thresholdCounts[3][2], g->thresholdCounts[3][3]); ^ meryl/kmer-mask.C:763:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aMixed "FW" "FW" "FW" "FW"\n", g->thresholdCounts[3][0], g->thresholdCounts[3][1], g->thresholdCounts[3][2], g->thresholdCounts[3][3]); ^ meryl/kmer-mask.C:763:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aMixed "FW" "FW" "FW" "FW"\n", g->thresholdCounts[3][0], g->thresholdCounts[3][1], g->thresholdCounts[3][2], g->thresholdCounts[3][3]); ^ meryl/kmer-mask.C:763:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "aMixed "FW" "FW" "FW" "FW"\n", g->thresholdCounts[3][0], g->thresholdCounts[3][1], g->thresholdCounts[3][2], g->thresholdCounts[3][3]); ^ meryl/kmer-mask.C: In member function ‘bool fastqRecord::load(FILE*, FILE*)’: meryl/kmer-mask.C:69:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(a1, 1024, FASTQ1); chomp(a1); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:70:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(a2, maxLength, FASTQ1); chomp(a2); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:71:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(a3, 1024, FASTQ1); chomp(a3); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:72:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(a4, maxLength, FASTQ1); chomp(a4); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:83:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(b1, 1024, FASTQ2); chomp(b1); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:84:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(b2, maxLength, FASTQ2); chomp(b2); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:85:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(b3, 1024, FASTQ2); chomp(b3); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:86:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(b4, maxLength, FASTQ2); chomp(b4); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o meryl/kmer-mask meryl/kmer-mask.o /<>/kmer-0~20150903+r2013/libkmer/libkmer.a /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/hitMatrix.o -c seagen/hitMatrix.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/hitMatrix.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from seagen/searchGENOME.H:20, from seagen/hitMatrix.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from seagen/searchGENOME.H:20, from seagen/hitMatrix.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from seagen/searchGENOME.H:20, from seagen/hitMatrix.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seagen/searchGENOME.H:22, from seagen/hitMatrix.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from seagen/searchGENOME.H:25, from seagen/hitMatrix.C:1: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seagen/hitMatrix.C:642:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ seagen/hitMatrix.C:642:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ seagen/hitMatrix.C:642:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ seagen/hitMatrix.C:642:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ seagen/hitMatrix.C:642:80: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ seagen/hitMatrix.C:642:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ seagen/hitMatrix.C:642:107: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ In file included from seagen/searchGENOME.H:25, from seagen/hitMatrix.C:1: seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/searchGENOME.o -c seagen/searchGENOME.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/searchGENOME.C:4: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from seagen/searchGENOME.H:20, from seagen/searchGENOME.C:4: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from seagen/searchGENOME.H:20, from seagen/searchGENOME.C:4: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from seagen/searchGENOME.H:20, from seagen/searchGENOME.C:4: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seagen/searchGENOME.H:22, from seagen/searchGENOME.C:4: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from seagen/searchGENOME.H:25, from seagen/searchGENOME.C:4: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/configuration.o -c seagen/configuration.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/configuration.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from seagen/searchGENOME.H:20, from seagen/configuration.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from seagen/searchGENOME.H:20, from seagen/configuration.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from seagen/searchGENOME.H:20, from seagen/configuration.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seagen/searchGENOME.H:22, from seagen/configuration.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from seagen/searchGENOME.H:25, from seagen/configuration.C:1: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seagen/configuration.C:84:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "\n"uint32FMTW(7)" sequences in %5.2f seconds, %8.3f per second.\n", nq, tm, nq/tm); ^ In file included from seagen/searchGENOME.H:25, from seagen/configuration.C:1: seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/encodedQuery.o -c seagen/encodedQuery.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from seagen/encodedQuery.H:6, from seagen/encodedQuery.C:3: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seagen/encodedQuery.H:6, from seagen/encodedQuery.C:3: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seagen/encodedQuery.H:6, from seagen/encodedQuery.C:3: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seagen/encodedQuery.H:6, from seagen/encodedQuery.C:3: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ seagen/encodedQuery.C:142:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "encodedQuery::test()-- mersAvail incorrect: Recomputed:"uint32FMT" Real:"uint32FMT"\n", _mersAvail, _r_mersAvail); ^ seagen/encodedQuery.C:142:88: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "encodedQuery::test()-- mersAvail incorrect: Recomputed:"uint32FMT" Real:"uint32FMT"\n", _mersAvail, _r_mersAvail); ^ seagen/encodedQuery.C:152:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "encodedQuery::test()-- skip["uint32FMTW(4)"] incorrect: Acc:%d Real:%d\n", i, getSkip(i, true), _r_skip[i]); ^ seagen/encodedQuery.C:160:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "encodedQuery::test()-- mers["uint32FMTW(4)"] incorrect: Acc:"uint64HEX" %s Real:"uint64HEX" %s\n", ^ seagen/encodedQuery.C:160:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "encodedQuery::test()-- mers["uint32FMTW(4)"] incorrect: Acc:"uint64HEX" %s Real:"uint64HEX" %s\n", ^ seagen/encodedQuery.C:160:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "encodedQuery::test()-- mers["uint32FMTW(4)"] incorrect: Acc:"uint64HEX" %s Real:"uint64HEX" %s\n", ^ seagen/encodedQuery.C:209:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "encodedQuery::addOutput()-- from "uint32FMT" to "uint32FMT" bytes.\n", ^ seagen/encodedQuery.C:209:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "encodedQuery::addOutput()-- from "uint32FMT" to "uint32FMT" bytes.\n", ^ seagen/encodedQuery.C: In member function ‘void encodedQuery::addOutput(void*, uint32)’: seagen/encodedQuery.C:207:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/thr-deadlock.o -c seagen/thr-deadlock.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/thr-deadlock.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from seagen/searchGENOME.H:20, from seagen/thr-deadlock.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from seagen/searchGENOME.H:20, from seagen/thr-deadlock.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from seagen/searchGENOME.H:20, from seagen/thr-deadlock.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seagen/searchGENOME.H:22, from seagen/thr-deadlock.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from seagen/searchGENOME.H:25, from seagen/thr-deadlock.C:1: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/thr-loader.o -c seagen/thr-loader.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/thr-loader.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from seagen/searchGENOME.H:20, from seagen/thr-loader.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from seagen/searchGENOME.H:20, from seagen/thr-loader.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from seagen/searchGENOME.H:20, from seagen/thr-loader.C:5: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seagen/searchGENOME.H:22, from seagen/thr-loader.C:5: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from seagen/searchGENOME.H:25, from seagen/thr-loader.C:5: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ seagen/thr-loader.C: In function ‘void* loaderThread(void*)’: seagen/thr-loader.C:14:17: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/thr-search.o -c seagen/thr-search.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/thr-search.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from seagen/searchGENOME.H:20, from seagen/thr-search.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from seagen/searchGENOME.H:20, from seagen/thr-search.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from seagen/searchGENOME.H:20, from seagen/thr-search.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seagen/searchGENOME.H:22, from seagen/thr-search.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from seagen/searchGENOME.H:25, from seagen/thr-search.C:1: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/thr-output.o -c seagen/thr-output.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/thr-output.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from seagen/searchGENOME.H:20, from seagen/thr-output.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from seagen/searchGENOME.H:20, from seagen/thr-output.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from seagen/searchGENOME.H:20, from seagen/thr-output.C:5: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seagen/searchGENOME.H:22, from seagen/thr-output.C:5: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from seagen/searchGENOME.H:25, from seagen/thr-output.C:5: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ seagen/thr-output.C: In function ‘void* writerThread(void*, void*)’: seagen/thr-output.C:48:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(config._outputFile, query->theOutput(), query->theOutputLength()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seagen/thr-output.C:62:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(config._matchCountsFile, str, strlen(str)); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/hitMatrix-sort.o -c seagen/hitMatrix-sort.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from seagen/hitMatrix.H:8, from seagen/hitMatrix-sort.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seagen/hitMatrix.H:8, from seagen/hitMatrix-sort.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seagen/hitMatrix.H:8, from seagen/hitMatrix-sort.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from seagen/hitMatrix.H:8, from seagen/hitMatrix-sort.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seagen/hitMatrix.H:9, from seagen/hitMatrix-sort.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from seagen/hitMatrix-sort.C:1: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/aHit.o -c seagen/aHit.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/aHit.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from seagen/aHit.H:5, from seagen/aHit.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from seagen/aHit.H:5, from seagen/aHit.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from seagen/aHit.H:5, from seagen/aHit.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ seagen/aHit.C:20:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ seagen/aHit.C:20:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ seagen/aHit.C:20:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ seagen/aHit.C:20:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ seagen/aHit.C:20:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ seagen/aHit.C:20:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ seagen/aHit.C:20:98: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ seagen/aHit.C: In function ‘void ahit_readBinary(aHit*, FILE*)’: seagen/aHit.C:12:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(a, sizeof(aHit), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o seagen/seagen seagen/hitMatrix.o seagen/searchGENOME.o seagen/configuration.o seagen/encodedQuery.o seagen/thr-deadlock.o seagen/thr-loader.o seagen/thr-search.o seagen/thr-output.o seagen/hitMatrix-sort.o seagen/aHit.o /<>/kmer-0~20150903+r2013/libkmer/libkmer.a /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/hitConverter.o -c seagen/hitConverter.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/hitConverter.C:3: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from seagen/aHit.H:5, from seagen/hitConverter.C:3: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from seagen/aHit.H:5, from seagen/hitConverter.C:3: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from seagen/aHit.H:5, from seagen/hitConverter.C:3: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ seagen/hitConverter.C: In function ‘void asc2bin(FILE*, FILE*)’: seagen/hitConverter.C:39:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(b, 1024, I); ~~~~~^~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o seagen/hitConverter seagen/hitConverter.o seagen/aHit.o /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/filterEST.o -c seagen/filterEST.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/filterEST.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from seagen/aHit.H:5, from seagen/filterEST.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from seagen/aHit.H:5, from seagen/filterEST.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from seagen/aHit.H:5, from seagen/filterEST.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seagen/filterEST.C:7: seagen/hitReader.H:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); ^ seagen/hitReader.H:62:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); ^ seagen/filterEST.C:76:11: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " hits saved:"uint32FMTW(8)"/"uint32FMTW(8)" = %6.3f%%\r", ^ seagen/filterEST.C:76:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " hits saved:"uint32FMTW(8)"/"uint32FMTW(8)" = %6.3f%%\r", ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/filterEST-complicated.o -c seagen/filterEST-complicated.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/filterEST-complicated.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from seagen/aHit.H:5, from seagen/filterEST-complicated.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from seagen/aHit.H:5, from seagen/filterEST-complicated.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from seagen/aHit.H:5, from seagen/filterEST-complicated.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seagen/filterEST-complicated.C:7: seagen/hitReader.H:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); ^ seagen/hitReader.H:62:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); ^ seagen/filterEST-complicated.C:67:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, uint32FMT"] unique: aggressively filtered to "uint32FMT" hits out of "uint32FMT" hits.\n", ^ seagen/filterEST-complicated.C:67:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, uint32FMT"] unique: aggressively filtered to "uint32FMT" hits out of "uint32FMT" hits.\n", ^ seagen/filterEST-complicated.C:115:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, uint32FMT"] knee: filtered "uint32FMT" hits down to "uint32FMT" hits using threshold %f\n", ^ seagen/filterEST-complicated.C:115:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, uint32FMT"] knee: filtered "uint32FMT" hits down to "uint32FMT" hits using threshold %f\n", ^ seagen/filterEST-complicated.C:139:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, uint32FMT"] uniform: uniform signal strength, saving the first "uint32FMT" hits out of "uint32FMT" hits, best=%f, worst=%f\n", ^ seagen/filterEST-complicated.C:139:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, uint32FMT"] uniform: uniform signal strength, saving the first "uint32FMT" hits out of "uint32FMT" hits, best=%f, worst=%f\n", ^ seagen/filterEST-complicated.C:174:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, uint32FMT"] diff: has no clear signal knee, saving the first "uint32FMT" hits out of "uint32FMT" hits, best=%f, worst=%f, largestdiff=%f\n", ^ seagen/filterEST-complicated.C:174:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, uint32FMT"] diff: has no clear signal knee, saving the first "uint32FMT" hits out of "uint32FMT" hits, best=%f, worst=%f, largestdiff=%f\n", ^ seagen/filterEST-complicated.C:228:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, uint32FMT"] spike: at "uint32FMT", "uint32FMT" hits saved: thresh=%f, "uint32FMT" hits, best=%f, worst=%f\n", ^ seagen/filterEST-complicated.C:228:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, uint32FMT"] spike: at "uint32FMT", "uint32FMT" hits saved: thresh=%f, "uint32FMT" hits, best=%f, worst=%f\n", ^ seagen/filterEST-complicated.C:228:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, uint32FMT"] spike: at "uint32FMT", "uint32FMT" hits saved: thresh=%f, "uint32FMT" hits, best=%f, worst=%f\n", ^ seagen/filterEST-complicated.C:277:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, uint32FMT"] is an unclassified signal, "uint32FMT" hits saved out of "uint32FMT" hits, best=%f, worst=%f\n", ^ seagen/filterEST-complicated.C:277:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(logFile, uint32FMT"] is an unclassified signal, "uint32FMT" hits saved out of "uint32FMT" hits, best=%f, worst=%f\n", ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/hitReader.o -c seagen/hitReader.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from seagen/hitReader.H:7, from seagen/hitReader.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from seagen/aHit.H:5, from seagen/hitReader.H:8, from seagen/hitReader.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from seagen/aHit.H:5, from seagen/hitReader.H:8, from seagen/hitReader.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from seagen/aHit.H:5, from seagen/hitReader.H:8, from seagen/hitReader.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seagen/hitReader.C:1: seagen/hitReader.H:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); ^ seagen/hitReader.H:62:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o seagen/filterEST seagen/filterEST.o seagen/filterEST-complicated.o seagen/hitReader.o seagen/aHit.o /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/filterMRNA.o -c seagen/filterMRNA.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/filterMRNA.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from seagen/aHit.H:5, from seagen/filterMRNA.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from seagen/aHit.H:5, from seagen/filterMRNA.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from seagen/aHit.H:5, from seagen/filterMRNA.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seagen/filterMRNA.C:7: seagen/hitReader.H:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); ^ seagen/hitReader.H:62:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); ^ seagen/filterMRNA.C:53:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " scores at least %4.2f AND at least "uint32FMT" bases covered are always output\n", MC, ML); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o seagen/filterMRNA seagen/filterMRNA.o seagen/hitReader.o seagen/aHit.o /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/filterNULL.o -c seagen/filterNULL.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/filterNULL.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from seagen/aHit.H:5, from seagen/filterNULL.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from seagen/aHit.H:5, from seagen/filterNULL.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from seagen/aHit.H:5, from seagen/filterNULL.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seagen/filterNULL.C:2: seagen/hitReader.H:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); ^ seagen/hitReader.H:62:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o seagen/filterNULL seagen/filterNULL.o seagen/hitReader.o seagen/aHit.o /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/filtertest.o -c seagen/filtertest.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from seagen/filtertest.C:7: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ seagen/filtertest.C:180:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "reading hits "uint32FMT"\r", hitsLen); ^ seagen/filtertest.C:186:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "reading hits "uint32FMT"\n", hitsLen); ^ seagen/filtertest.C:308:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%f %f %f %6.4f %6.4f "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ seagen/filtertest.C:308:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%f %f %f %6.4f %6.4f "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ seagen/filtertest.C:308:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%f %f %f %6.4f %6.4f "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ seagen/filtertest.C:308:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%f %f %f %6.4f %6.4f "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", ^ seagen/filtertest.C: In function ‘void ahit_readBinary(aHit*, FILE*)’: seagen/filtertest.C:39:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(a, sizeof(aHit), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ seagen/filtertest.C: In function ‘int main(int, char**)’: seagen/filtertest.C:162:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(hitLine, 1024, stdin); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o seagen/filtertest seagen/filtertest.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/sortHits.o -c seagen/sortHits.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/sortHits.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from seagen/aHit.H:5, from seagen/sortHits.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from seagen/aHit.H:5, from seagen/sortHits.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from seagen/aHit.H:5, from seagen/sortHits.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ seagen/sortHits.C: In member function ‘bool aHitReader::readHit(aHit&)’: seagen/sortHits.C:52:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buffer, 1024, theFile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ seagen/sortHits.C: In member function ‘void aHitTemporary::nextHit()’: seagen/sortHits.C:119:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&hit, sizeof(aHit), 1, theFile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o seagen/sortHits seagen/sortHits.o seagen/aHit.o /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/filterESTsimple.o -c seagen/filterESTsimple.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/filterESTsimple.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from seagen/aHit.H:5, from seagen/filterESTsimple.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from seagen/aHit.H:5, from seagen/filterESTsimple.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from seagen/aHit.H:5, from seagen/filterESTsimple.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from seagen/filterESTsimple.C:12: seagen/hitReader.H:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); ^ seagen/hitReader.H:62:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o seagen/filterESTsimple seagen/filterESTsimple.o seagen/hitReader.o seagen/aHit.o /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/cleanPolishes.o -c sim4dbutils/cleanPolishes.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from sim4dbutils/cleanPolishes.C:7: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/cleanPolishes.C:7: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/cleanPolishes.C:7: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/cleanPolishes.C:7: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4dbutils/cleanPolishes.C:178:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "A big intron is one that is at least "uint32FMT"bp long.\n", intronLimit); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/cleanPolishes sim4dbutils/cleanPolishes.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/fixPolishesIID.o -c sim4dbutils/fixPolishesIID.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from sim4dbutils/fixPolishesIID.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/fixPolishesIID.C:7: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/fixPolishesIID.C:7: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/fixPolishesIID.C:7: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/fixPolishesIID sim4dbutils/fixPolishesIID.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/comparePolishes.o -c sim4dbutils/comparePolishes.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from sim4dbutils/comparePolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/comparePolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/comparePolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/comparePolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4dbutils/comparePolishes.C:308:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ sim4dbutils/comparePolishes.C:308:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ sim4dbutils/comparePolishes.C:308:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ sim4dbutils/comparePolishes.C:308:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ sim4dbutils/comparePolishes.C:308:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ sim4dbutils/comparePolishes.C:308:118: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ sim4dbutils/comparePolishes.C:308:145: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ sim4dbutils/comparePolishes.C:308:158: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ sim4dbutils/comparePolishes.C:452:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR! inA="uint32FMT" inB="uint32FMT"\n", inA, inB); ^ sim4dbutils/comparePolishes.C:452:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR! inA="uint32FMT" inB="uint32FMT"\n", inA, inB); ^ sim4dbutils/comparePolishes.C:484:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", ^ sim4dbutils/comparePolishes.C:484:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", ^ sim4dbutils/comparePolishes.C:484:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", ^ sim4dbutils/comparePolishes.C:484:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", ^ sim4dbutils/comparePolishes.C:484:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", ^ sim4dbutils/comparePolishes.C:484:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", ^ sim4dbutils/comparePolishes.C:484:156: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", ^ sim4dbutils/comparePolishes.C:520:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "\ngood:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\n", ^ sim4dbutils/comparePolishes.C:520:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "\ngood:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\n", ^ sim4dbutils/comparePolishes.C:520:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "\ngood:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\n", ^ sim4dbutils/comparePolishes.C:520:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "\ngood:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\n", ^ sim4dbutils/comparePolishes.C:520:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "\ngood:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\n", ^ sim4dbutils/comparePolishes.C:520:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "\ngood:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\n", ^ sim4dbutils/comparePolishes.C: In function ‘int main(int, char**)’: sim4dbutils/comparePolishes.C:74:20: warning: variable ‘doGFF3’ set but not used [-Wunused-but-set-variable] bool doGFF3; ^~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/s4p_overlap.o -c sim4dbutils/s4p_overlap.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from sim4dbutils/s4p_overlap.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from sim4dbutils/s4p_overlap.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from sim4dbutils/s4p_overlap.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from sim4dbutils/s4p_overlap.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/comparePolishes sim4dbutils/comparePolishes.o sim4dbutils/s4p_overlap.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/convertToAtac.o -c sim4dbutils/convertToAtac.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/convertToAtac.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/convertToAtac.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/convertToAtac.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/convertToAtac.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4dbutils/convertToAtac.C:279:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", ^ sim4dbutils/convertToAtac.C:279:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", ^ sim4dbutils/convertToAtac.C:279:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", ^ sim4dbutils/convertToAtac.C:279:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", ^ sim4dbutils/convertToAtac.C:279:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", ^ sim4dbutils/convertToAtac.C:279:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", ^ sim4dbutils/convertToAtac.C:279:122: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", ^ sim4dbutils/convertToAtac.C:279:134: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", ^ sim4dbutils/convertToAtac.C:286:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", ^ sim4dbutils/convertToAtac.C:286:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", ^ sim4dbutils/convertToAtac.C:286:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", ^ sim4dbutils/convertToAtac.C:286:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", ^ sim4dbutils/convertToAtac.C:286:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", ^ sim4dbutils/convertToAtac.C:286:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", ^ sim4dbutils/convertToAtac.C:286:122: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", ^ sim4dbutils/convertToAtac.C:286:134: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", ^ sim4dbutils/convertToAtac.C:330:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Fixed "uint32FMT" indel/mismatches.\n", totalFixed); ^ sim4dbutils/convertToAtac.C: In function ‘int main(int, char**)’: sim4dbutils/convertToAtac.C:241:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] if (e->_estAlignment[aPos] != '-') ^ sim4dbutils/convertToAtac.C:310:16: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] if (e->_estAlignment[aPos] != '-') ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/convertToAtac sim4dbutils/convertToAtac.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/convertToExtent.o -c sim4dbutils/convertToExtent.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/convertToExtent.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/convertToExtent.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/convertToExtent.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/convertToExtent.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4dbutils/convertToExtent.C:43:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", ^ sim4dbutils/convertToExtent.C:43:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", ^ sim4dbutils/convertToExtent.C:43:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", ^ sim4dbutils/convertToExtent.C:43:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", ^ sim4dbutils/convertToExtent.C:43:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", ^ sim4dbutils/convertToExtent.C:43:88: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", ^ sim4dbutils/convertToExtent.C:43:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", ^ sim4dbutils/convertToExtent.C:43:118: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", ^ sim4dbutils/convertToExtent.C:50:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", ^ sim4dbutils/convertToExtent.C:50:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", ^ sim4dbutils/convertToExtent.C:50:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", ^ sim4dbutils/convertToExtent.C:50:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", ^ sim4dbutils/convertToExtent.C:50:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", ^ sim4dbutils/convertToExtent.C:50:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", ^ sim4dbutils/convertToExtent.C: In function ‘int main(int, char**)’: sim4dbutils/convertToExtent.C:59:8: warning: variable ‘beVerbose’ set but not used [-Wunused-but-set-variable] bool beVerbose = false; ^~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/convertToExtent sim4dbutils/convertToExtent.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/convertPolishes.o -c sim4dbutils/convertPolishes.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from sim4dbutils/convertPolishes.C:7: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/convertPolishes.C:8: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/convertPolishes.C:8: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/convertPolishes.C:8: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/convertPolishes sim4dbutils/convertPolishes.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/detectChimera.o -c sim4dbutils/detectChimera.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/detectChimera.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/detectChimera.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/detectChimera.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/detectChimera.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4dbutils/detectChimera.C:129:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMTW(3)"-"uint32FMTW(3)" %s%s ("uint32FMT","uint32FMT")\n", ^ sim4dbutils/detectChimera.C:129:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMTW(3)"-"uint32FMTW(3)" %s%s ("uint32FMT","uint32FMT")\n", ^ sim4dbutils/detectChimera.C:129:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMTW(3)"-"uint32FMTW(3)" %s%s ("uint32FMT","uint32FMT")\n", ^ sim4dbutils/detectChimera.C:153:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "first "uint32FMT" alignments.\n", maxPts); ^ sim4dbutils/detectChimera.C: In function ‘int main(int, char**)’: sim4dbutils/detectChimera.C:19:10: warning: variable ‘beVerbose’ set but not used [-Wunused-but-set-variable] bool beVerbose = false; ^~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/detectChimera sim4dbutils/detectChimera.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/depthOfPolishes.o -c sim4dbutils/depthOfPolishes.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/depthOfPolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/depthOfPolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/depthOfPolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/depthOfPolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4dbutils/depthOfPolishes.C:103:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT"\t"uint32FMT"\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\n", ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/depthOfPolishes sim4dbutils/depthOfPolishes.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/filterPolishes.o -c sim4dbutils/filterPolishes.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from sim4dbutils/filterPolishes.C:7: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/filterPolishes.C:8: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/filterPolishes.C:8: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/filterPolishes.C:8: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4dbutils/filterPolishes.C:178:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Filtering at "uint32FMT"%% coverage and "uint32FMT"%% identity and "uint32FMT"bp.\n", minC, minI, minL); ^ sim4dbutils/filterPolishes.C:178:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Filtering at "uint32FMT"%% coverage and "uint32FMT"%% identity and "uint32FMT"bp.\n", minC, minI, minL); ^ sim4dbutils/filterPolishes.C:178:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Filtering at "uint32FMT"%% coverage and "uint32FMT"%% identity and "uint32FMT"bp.\n", minC, minI, minL); ^ sim4dbutils/filterPolishes.C:181:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Filtering for cDNA idx "uint32FMT" and genomic idx "uint32FMT"\n", cdna, geno); ^ sim4dbutils/filterPolishes.C:181:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Filtering for cDNA idx "uint32FMT" and genomic idx "uint32FMT"\n", cdna, geno); ^ sim4dbutils/filterPolishes.C:183:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Filtering for cDNA idx "uint32FMT".\n", cdna); ^ sim4dbutils/filterPolishes.C:185:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Filtering for genomic idx "uint32FMT".\n", geno); ^ sim4dbutils/filterPolishes.C:259:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Filter: %6.2f%% ("uint64FMT" matches processed) ("uint64FMT" failed/intractable)\r", ^ sim4dbutils/filterPolishes.C:259:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Filter: %6.2f%% ("uint64FMT" matches processed) ("uint64FMT" failed/intractable)\r", ^ sim4dbutils/filterPolishes.C:264:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Filter: %6.2f%% ("uint64FMT" matches processed)\r", ^ sim4dbutils/filterPolishes.C:274:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Filter: %6.2f%% ("uint64FMT" matches processed) ("uint64FMT" failed/intractable)\n", ^ sim4dbutils/filterPolishes.C:274:52: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Filter: %6.2f%% ("uint64FMT" matches processed) ("uint64FMT" failed/intractable)\n", ^ sim4dbutils/filterPolishes.C:279:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Filter: %6.2f%% ("uint64FMT" matches processed)\n", ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/filterPolishes sim4dbutils/filterPolishes.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/headPolishes.o -c sim4dbutils/headPolishes.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/headPolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/headPolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/headPolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/headPolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/headPolishes sim4dbutils/headPolishes.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/mappedCoverage.o -c sim4dbutils/mappedCoverage.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from sim4dbutils/mappedCoverage.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/mappedCoverage.C:7: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/mappedCoverage.C:7: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/mappedCoverage.C:7: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4dbutils/mappedCoverage.C:94:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Found "uint32FMT" sequences in the input file.\n", covMax); ^ sim4dbutils/mappedCoverage.C:130:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: Found iid "uint32FMT", but only allocated "uint32FMT" places!\n", ^ sim4dbutils/mappedCoverage.C:130:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: Found iid "uint32FMT", but only allocated "uint32FMT" places!\n", ^ sim4dbutils/mappedCoverage.C:153:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: Found iid "uint32FMT", but only allocated "uint32FMT" places!\n", ^ sim4dbutils/mappedCoverage.C:153:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: Found iid "uint32FMT", but only allocated "uint32FMT" places!\n", ^ sim4dbutils/mappedCoverage.C:219:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: range "uint32FMT"-"uint32FMT" out of bounds (seqLen = "uint32FMT")\n", ^ sim4dbutils/mappedCoverage.C:219:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: range "uint32FMT"-"uint32FMT" out of bounds (seqLen = "uint32FMT")\n", ^ sim4dbutils/mappedCoverage.C:219:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: range "uint32FMT"-"uint32FMT" out of bounds (seqLen = "uint32FMT")\n", ^ sim4dbutils/mappedCoverage.C:242:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(C, uint32FMT"\t"uint32FMT"\t%5.3f\t"uint32FMT"\t"uint32FMT"\n", ^ sim4dbutils/mappedCoverage.C:242:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(C, uint32FMT"\t"uint32FMT"\t%5.3f\t"uint32FMT"\t"uint32FMT"\n", ^ sim4dbutils/mappedCoverage.C:242:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(C, uint32FMT"\t"uint32FMT"\t%5.3f\t"uint32FMT"\t"uint32FMT"\n", ^ sim4dbutils/mappedCoverage.C: In function ‘int main(int, char**)’: sim4dbutils/mappedCoverage.C:106:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(inLine, 1024, stdin); ~~~~~^~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/mappedCoverage sim4dbutils/mappedCoverage.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/mergePolishes.o -c sim4dbutils/mergePolishes.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from sim4dbutils/mergePolishes.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/mergePolishes.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/mergePolishes.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/mergePolishes.C:5: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/mergePolishes sim4dbutils/mergePolishes.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/parseSNP.o -c sim4dbutils/parseSNP.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from sim4dbutils/parseSNP.C:9: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/parseSNP.C:10: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/parseSNP.C:10: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/parseSNP.C:10: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4dbutils/parseSNP.C:229:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", ^ sim4dbutils/parseSNP.C:229:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", ^ sim4dbutils/parseSNP.C:229:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", ^ sim4dbutils/parseSNP.C:229:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", ^ sim4dbutils/parseSNP.C:229:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", ^ sim4dbutils/parseSNP.C:229:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", ^ sim4dbutils/parseSNP.C:229:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", ^ sim4dbutils/parseSNP.C:269:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", ^ sim4dbutils/parseSNP.C:269:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", ^ sim4dbutils/parseSNP.C:269:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", ^ sim4dbutils/parseSNP.C:269:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", ^ sim4dbutils/parseSNP.C:269:98: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", ^ sim4dbutils/parseSNP.C:269:113: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", ^ sim4dbutils/parseSNP.C:269:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", ^ sim4dbutils/parseSNP.C:269:143: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", ^ sim4dbutils/parseSNP.C:538:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: Polishes not sorted by SNP idx! this="uint32FMT", looking for "uint32FMT"\n", ^ sim4dbutils/parseSNP.C:538:80: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: Polishes not sorted by SNP idx! this="uint32FMT", looking for "uint32FMT"\n", ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/parseSNP sim4dbutils/parseSNP.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/pickBestPolish.o -c sim4dbutils/pickBestPolish.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from sim4dbutils/pickBestPolish.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/pickBestPolish.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/pickBestPolish.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/pickBestPolish.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4dbutils/pickBestPolish.C:35:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(O, uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(4)" "uint32FMTW(4), ^ sim4dbutils/pickBestPolish.C:35:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(O, uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(4)" "uint32FMTW(4), ^ sim4dbutils/pickBestPolish.C:35:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(O, uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(4)" "uint32FMTW(4), ^ sim4dbutils/pickBestPolish.C:39:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(O, " ("uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(3)")", ^ sim4dbutils/pickBestPolish.C:39:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(O, " ("uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(3)")", ^ sim4dbutils/pickBestPolish.C:39:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(O, " ("uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(3)")", ^ sim4dbutils/pickBestPolish.C:39:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(O, " ("uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(3)")", ^ sim4dbutils/pickBestPolish.C:39:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(O, " ("uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(3)")", ^ sim4dbutils/pickBestPolish.C:69:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Picking Best for estID="uint32FMT" with %5d choices.\r", p[0]->_estID, pNum); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/pickBestPolish sim4dbutils/pickBestPolish.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/pickBestPair.o -c sim4dbutils/pickBestPair.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from sim4dbutils/pickBestPair.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/pickBestPair.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/pickBestPair.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/pickBestPair.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4dbutils/pickBestPair.C:546:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", ^ sim4dbutils/pickBestPair.C:546:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", ^ sim4dbutils/pickBestPair.C:546:52: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", ^ sim4dbutils/pickBestPair.C:546:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", ^ sim4dbutils/pickBestPair.C:546:80: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", ^ sim4dbutils/pickBestPair.C:546:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", ^ sim4dbutils/pickBestPair.C:546:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", ^ sim4dbutils/pickBestPair.C:546:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", ^ sim4dbutils/pickBestPair.C:569:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", ^ sim4dbutils/pickBestPair.C:569:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", ^ sim4dbutils/pickBestPair.C:569:52: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", ^ sim4dbutils/pickBestPair.C:569:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", ^ sim4dbutils/pickBestPair.C:569:80: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", ^ sim4dbutils/pickBestPair.C:569:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", ^ sim4dbutils/pickBestPair.C:569:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", ^ sim4dbutils/pickBestPair.C:569:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", ^ sim4dbutils/pickBestPair.C:584:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(STA, "alignments: "uint32FMT" "uint32FMT"\n", mr1END, mr2END); ^ sim4dbutils/pickBestPair.C:584:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(STA, "alignments: "uint32FMT" "uint32FMT"\n", mr1END, mr2END); ^ sim4dbutils/pickBestPair.C: In function ‘int main(int, char**)’: sim4dbutils/pickBestPair.C:266:19: warning: variable ‘minIdent’ set but not used [-Wunused-but-set-variable] double minIdent = 0; ^~~~~~~~ sim4dbutils/pickBestPair.C:267:19: warning: variable ‘minLength’ set but not used [-Wunused-but-set-variable] double minLength = 0; ^~~~~~~~~ sim4dbutils/pickBestPair.C:268:19: warning: variable ‘minCoverage’ set but not used [-Wunused-but-set-variable] double minCoverage = 0; ^~~~~~~~~~~ sim4dbutils/pickBestPair.C: In function ‘bool readMR(FILE*, mapResult&)’: sim4dbutils/pickBestPair.C:54:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 1024, in); ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:57:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 1024, in); ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C: In function ‘bool readMRcoords(FILE*, mapResult&)’: sim4dbutils/pickBestPair.C:123:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 1024, in); ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:124:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 1024, in); ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:125:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 1024, in); ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:126:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 1024, in); ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:129:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 1024, in); ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C: In function ‘bool readMRcoords(FILE*, mapResult&, bool&)’: sim4dbutils/pickBestPair.C:189:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 1024, in); ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:190:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 1024, in); ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:191:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 1024, in); ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:192:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 1024, in); ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:195:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 1024, in); ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C: In function ‘int main(int, char**)’: sim4dbutils/pickBestPair.C:354:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(LL, 10240, IN); ~~~~~^~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:365:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(LL, 10240, IN); ~~~~~^~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/pickBestPair sim4dbutils/pickBestPair.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/pickUniquePolish.o -c sim4dbutils/pickUniquePolish.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from sim4dbutils/pickUniquePolish.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/pickUniquePolish.C:7: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/pickUniquePolish.C:7: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/pickUniquePolish.C:7: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/pickUniquePolish sim4dbutils/pickUniquePolish.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/plotCoverageVsIdentity.o -c sim4dbutils/plotCoverageVsIdentity.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/plotCoverageVsIdentity.C:7: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/plotCoverageVsIdentity.C:7: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/plotCoverageVsIdentity.C:7: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/plotCoverageVsIdentity.C:7: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4dbutils/plotCoverageVsIdentity.C:32:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(S, uint32FMT" "uint32FMT"\n", p->_percentIdentity, p->_querySeqIdentity); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/plotCoverageVsIdentity sim4dbutils/plotCoverageVsIdentity.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/removeDuplicate.o -c sim4dbutils/removeDuplicate.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/removeDuplicate.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/removeDuplicate.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/removeDuplicate.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/removeDuplicate.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/removeDuplicate sim4dbutils/removeDuplicate.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/sortPolishes.o -c sim4dbutils/sortPolishes.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/sortPolishes.C:7: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/sortPolishes.C:7: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/sortPolishes.C:7: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/sortPolishes.C:7: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4dbutils/sortPolishes.C:87:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Read: "uint32FMTW(8)" polishes -- "uint32FMTW(5)" temporary files -- "uint64FMTW(5)"MB / "uint64FMTW(5)"MB -- "uint64FMTW(5)" bytes/polish\r", ^ sim4dbutils/sortPolishes.C:87:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Read: "uint32FMTW(8)" polishes -- "uint32FMTW(5)" temporary files -- "uint64FMTW(5)"MB / "uint64FMTW(5)"MB -- "uint64FMTW(5)" bytes/polish\r", ^ sim4dbutils/sortPolishes.C:87:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Read: "uint32FMTW(8)" polishes -- "uint32FMTW(5)" temporary files -- "uint64FMTW(5)"MB / "uint64FMTW(5)"MB -- "uint64FMTW(5)" bytes/polish\r", ^ sim4dbutils/sortPolishes.C:87:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Read: "uint32FMTW(8)" polishes -- "uint32FMTW(5)" temporary files -- "uint64FMTW(5)"MB / "uint64FMTW(5)"MB -- "uint64FMTW(5)" bytes/polish\r", ^ sim4dbutils/sortPolishes.C:87:125: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Read: "uint32FMTW(8)" polishes -- "uint32FMTW(5)" temporary files -- "uint64FMTW(5)"MB / "uint64FMTW(5)"MB -- "uint64FMTW(5)" bytes/polish\r", ^ sim4dbutils/sortPolishes.C: In function ‘sim4polish* savePolish(sim4polish*, uint64*)’: sim4dbutils/sortPolishes.C:39:34: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘class sim4polish’; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(r, q, sizeof(sim4polish)); ^ In file included from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/sortPolishes.C:7: /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:99:7: note: ‘class sim4polish’ declared here class sim4polish { ^~~~~~~~~~ sim4dbutils/sortPolishes.C:59:69: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘class sim4polishExon’; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(r->_exons, q->_exons, sizeof(sim4polishExon) * q->_numExons); ^ In file included from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/sortPolishes.C:7: /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:49:7: note: ‘class sim4polishExon’ declared here class sim4polishExon { ^~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/sortPolishes sim4dbutils/sortPolishes.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/summarizePolishes.o -c sim4dbutils/summarizePolishes.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from sim4dbutils/summarizePolishes.C:4: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/summarizePolishes.C:4: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/summarizePolishes.C:4: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/summarizePolishes.C:4: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4dbutils/summarizePolishes.C:167:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "numSeqs: "uint32FMT"\n", numSeqs); ^ sim4dbutils/summarizePolishes.C:169:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ids: "uint32FMT" -- ", idLen); ^ sim4dbutils/summarizePolishes.C:171:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " "uint32FMT"", id[i]); ^ sim4dbutils/summarizePolishes.C:173:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "cvs: "uint32FMT" -- ", cvLen); ^ sim4dbutils/summarizePolishes.C:175:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " "uint32FMT"", cv[i]); ^ sim4dbutils/summarizePolishes.C:244:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); ^ sim4dbutils/summarizePolishes.C:244:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); ^ sim4dbutils/summarizePolishes.C:244:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); ^ sim4dbutils/summarizePolishes.C:244:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); ^ sim4dbutils/summarizePolishes.C:244:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); ^ sim4dbutils/summarizePolishes.C:247:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMTW(3)" "uint32FMTW(3)": mapped="uint32FMTW(8)" notmapped="uint32FMTW(8)" est="uint32FMTW(8)" gen="uint32FMTW(8)"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); ^ sim4dbutils/summarizePolishes.C:247:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMTW(3)" "uint32FMTW(3)": mapped="uint32FMTW(8)" notmapped="uint32FMTW(8)" est="uint32FMTW(8)" gen="uint32FMTW(8)"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); ^ sim4dbutils/summarizePolishes.C:247:78: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMTW(3)" "uint32FMTW(3)": mapped="uint32FMTW(8)" notmapped="uint32FMTW(8)" est="uint32FMTW(8)" gen="uint32FMTW(8)"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); ^ sim4dbutils/summarizePolishes.C:247:104: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMTW(3)" "uint32FMTW(3)": mapped="uint32FMTW(8)" notmapped="uint32FMTW(8)" est="uint32FMTW(8)" gen="uint32FMTW(8)"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); ^ sim4dbutils/summarizePolishes.C:247:125: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, uint32FMTW(3)" "uint32FMTW(3)": mapped="uint32FMTW(8)" notmapped="uint32FMTW(8)" est="uint32FMTW(8)" gen="uint32FMTW(8)"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/summarizePolishes sim4dbutils/summarizePolishes.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/uniqPolishes.o -c sim4dbutils/uniqPolishes.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/uniqPolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/uniqPolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/uniqPolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/uniqPolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/uniqPolishes sim4dbutils/uniqPolishes.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/vennPolishes.o -c sim4dbutils/vennPolishes.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from sim4dbutils/vennPolishes.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/vennPolishes.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/vennPolishes.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/vennPolishes.C:5: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4dbutils/vennPolishes.C:115:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "WARNING: You gave me "uint32FMT" files! That's pretty big. I don't know\n", numFiles); ^ sim4dbutils/vennPolishes.C:175:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, " "uint32FMTW(8)" ", counts[index]); ^ sim4dbutils/vennPolishes.C:183:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%c = ("uint32FMTW(8)" total) %s\n", 'A' + (char)i, sizes[i], argv[i+numArgs]); ^ sim4dbutils/vennPolishes.C:189:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "] "uint32FMT"\n", counts[index]); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/vennPolishes sim4dbutils/vennPolishes.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/realignPolishes.o -c sim4dbutils/realignPolishes.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from sim4dbutils/realignPolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/realignPolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/realignPolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/realignPolishes.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4dbutils/realignPolishes.C:160:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "MERGE: "uint32FMTW(4)"-"uint32FMTW(4)" (%6.2f,%6.2f) "uint32FMTW(4)"-"uint32FMTW(4) ^ sim4dbutils/realignPolishes.C:160:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "MERGE: "uint32FMTW(4)"-"uint32FMTW(4)" (%6.2f,%6.2f) "uint32FMTW(4)"-"uint32FMTW(4) ^ sim4dbutils/realignPolishes.C:160:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "MERGE: "uint32FMTW(4)"-"uint32FMTW(4)" (%6.2f,%6.2f) "uint32FMTW(4)"-"uint32FMTW(4) ^ sim4dbutils/realignPolishes.C:160:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "MERGE: "uint32FMTW(4)"-"uint32FMTW(4)" (%6.2f,%6.2f) "uint32FMTW(4)"-"uint32FMTW(4) ^ sim4dbutils/realignPolishes.C:161:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " and "uint32FMTW(8)"-"uint32FMTW(8)" (%6.2f,%6.2f) "uint32FMTW(8)"-"uint32FMTW(8)"\n", ^ sim4dbutils/realignPolishes.C:161:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " and "uint32FMTW(8)"-"uint32FMTW(8)" (%6.2f,%6.2f) "uint32FMTW(8)"-"uint32FMTW(8)"\n", ^ sim4dbutils/realignPolishes.C:161:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " and "uint32FMTW(8)"-"uint32FMTW(8)" (%6.2f,%6.2f) "uint32FMTW(8)"-"uint32FMTW(8)"\n", ^ sim4dbutils/realignPolishes.C:161:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " and "uint32FMTW(8)"-"uint32FMTW(8)" (%6.2f,%6.2f) "uint32FMTW(8)"-"uint32FMTW(8)"\n", ^ sim4dbutils/realignPolishes.C:243:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "WARNING: CHANGED! "uint32FMT" -> "uint32FMT"\n", nm, p->_numMatches); ^ sim4dbutils/realignPolishes.C:243:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "WARNING: CHANGED! "uint32FMT" -> "uint32FMT"\n", nm, p->_numMatches); ^ sim4dbutils/realignPolishes.C:248:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(mergeLog, "MERGED\tEST\t"uint32FMT"\tfrom\t%8.3f\t%8.3f\tto\t%8.3f\t%8.3f\n", ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/realignPolishes sim4dbutils/realignPolishes.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/removeRedundant.o -c sim4dbutils/removeRedundant.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from sim4dbutils/removeRedundant.C:5: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/removeRedundant.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/removeRedundant.C:5: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4dbutils/removeRedundant.C:5: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4dbutils/removeRedundant.C:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "IID="uint32FMTW(8)" -- overlap:"uint32FMT" noOverlap:"uint32FMT"\r", ^ sim4dbutils/removeRedundant.C:107:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "IID="uint32FMTW(8)" -- overlap:"uint32FMT" noOverlap:"uint32FMT"\r", ^ sim4dbutils/removeRedundant.C:107:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "IID="uint32FMTW(8)" -- overlap:"uint32FMT" noOverlap:"uint32FMT"\r", ^ sim4dbutils/removeRedundant.C:212:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "\nNOT A PERFECT CLIQUE! Found "uint32FMT" overlaps, wanted "uint32FMT" in the clique.\n", ^ sim4dbutils/removeRedundant.C:212:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "\nNOT A PERFECT CLIQUE! Found "uint32FMT" overlaps, wanted "uint32FMT" in the clique.\n", ^ sim4dbutils/removeRedundant.C:260:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "\nmatches withOvl:"uint32FMT" withoutOvl:"uint32FMT"\n", ^ sim4dbutils/removeRedundant.C:260:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "\nmatches withOvl:"uint32FMT" withoutOvl:"uint32FMT"\n", ^ sim4dbutils/removeRedundant.C:262:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "not perfect clique:"uint32FMT"\n", notPerfectClique); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/removeRedundant sim4dbutils/removeRedundant.o sim4dbutils/s4p_overlap.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/reportAlignmentDifferences.o -c sim4dbutils/reportAlignmentDifferences.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/reportAlignmentDifferences.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/reportAlignmentDifferences.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/reportAlignmentDifferences.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libsim4/sim4polish/sim4polish.H:11, from /<>/kmer-0~20150903+r2013/libsim4/sim4.H:1, from sim4dbutils/reportAlignmentDifferences.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4dbutils/reportAlignmentDifferences.C: In function ‘int main(int, char**)’: sim4dbutils/reportAlignmentDifferences.C:155:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] if (e->_estAlignment[aPos] != '-') ^ sim4dbutils/reportAlignmentDifferences.C:201:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(gnuCmd); ~~~~~~^~~~~~~~ sim4dbutils/reportAlignmentDifferences.C:200:19: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4086 [-Wformat-overflow=] sprintf(gnuCmd, "gnuplot < %s", gnuName); ^~~~~~~~~~~~~~ ~~~~~~~ In file included from /usr/include/stdio.h:862, from sim4dbutils/reportAlignmentDifferences.C:1: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4dbutils/reportAlignmentDifferences sim4dbutils/reportAlignmentDifferences.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libsim4/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4db/sim4th.o -c sim4db/sim4th.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from sim4db/sim4th.C:34: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4db/sim4th.C:34: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4db/sim4th.C:34: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from sim4db/sim4th.C:34: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ sim4db/sim4th.C:327:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(str, "%s -Y "uint32FMT" "uint32FMT"\n", ^ sim4db/sim4th.C:327:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(str, "%s -Y "uint32FMT" "uint32FMT"\n", ^ sim4db/sim4th.C: In function ‘void writer(void*, void*)’: sim4db/sim4th.C:316:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(fOutput, o, strlen(o) * sizeof(char)); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sim4db/sim4th.C:332:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(fYesNo, str, strlen(str) * sizeof(char)); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o sim4db/sim4db sim4db/sim4th.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/snapper2.o -c snapper/snapper2.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/snapper2.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/snapper2.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/snapper2.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/snapper2.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from snapper/snapper2.H:20, from snapper/snapper2.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from snapper/snapper2.C:1: snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ snapper/snapper2.C:59:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%6.4f %6.4f %6.4f %6.4f %6.4f "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)"\n", ^ snapper/snapper2.C:59:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%6.4f %6.4f %6.4f %6.4f %6.4f "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)"\n", ^ snapper/snapper2.C:59:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%6.4f %6.4f %6.4f %6.4f %6.4f "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)"\n", ^ snapper/snapper2.C:59:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%6.4f %6.4f %6.4f %6.4f %6.4f "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)"\n", ^ snapper/snapper2.C:248:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "WARNING: Found "uint32FMT" queries shorter than minimum reportable size (-discardexonlength = "uint32FMT")\n", ^ snapper/snapper2.C:248:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "WARNING: Found "uint32FMT" queries shorter than minimum reportable size (-discardexonlength = "uint32FMT")\n", ^ snapper/snapper2.C:254:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "WARNING: Found "uint32FMT" queries longer than maximum size ("uint32FMT")\n", ^ snapper/snapper2.C:254:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "WARNING: Found "uint32FMT" queries longer than maximum size ("uint32FMT")\n", ^ snapper/snapper2.C:295:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Created "uint32FMT" filters (out of "uint32FMT" available) to test/validate.\n", ^ snapper/snapper2.C:295:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Created "uint32FMT" filters (out of "uint32FMT" available) to test/validate.\n", ^ In file included from snapper/snapper2.C:1: snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ snapper/snapper2.C: In function ‘void writerThread(void*, void*)’: snapper/snapper2.C:155:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(resultFILE, qry->theOutput, sizeof(char) * qry->theOutputLen); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/snapper2.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H: In member function ‘void logMsg::write(int, const char*)’: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:85:12: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] ::write(file, _log, sizeof(char) * _logLen); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/configuration.o -c snapper/configuration.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/configuration.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/configuration.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/configuration.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/configuration.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from snapper/snapper2.H:20, from snapper/configuration.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from snapper/configuration.C:1: snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ snapper/configuration.C:205:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: Invalid afLength "uint32FMT", should be < 64.\n", _afLength), err++; ^ In file included from snapper/configuration.C:1: snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/thr-search.o -c snapper/thr-search.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/thr-search.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/thr-search.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/thr-search.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/thr-search.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from snapper/snapper2.H:20, from snapper/thr-search.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from snapper/thr-search.C:1: snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/thr-filter.o -c snapper/thr-filter.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/thr-filter.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/thr-filter.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/thr-filter.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/thr-filter.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from snapper/snapper2.H:20, from snapper/thr-filter.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from snapper/thr-filter.C:1: snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/thr-polish.o -c snapper/thr-polish.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/thr-polish.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/thr-polish.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/thr-polish.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/thr-polish.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from snapper/snapper2.H:20, from snapper/thr-polish.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from snapper/thr-polish.C:1: snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ snapper/thr-polish.C:311:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "doPolish()-- Can't reallocate space for the output string ("uint32FMT" bytes) in thread "uint64FMT"\n", qry->theOutputMax, state->threadID); ^ snapper/thr-polish.C:311:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "doPolish()-- Can't reallocate space for the output string ("uint32FMT" bytes) in thread "uint64FMT"\n", qry->theOutputMax, state->threadID); ^ In file included from snapper/thr-polish.C:1: snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/thr-polish-dp.o -c snapper/thr-polish-dp.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/thr-polish-dp.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/thr-polish-dp.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/thr-polish-dp.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/thr-polish-dp.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from snapper/snapper2.H:20, from snapper/thr-polish-dp.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from snapper/thr-polish-dp.C:1: snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ snapper/thr-polish-dp.C:89:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "dpMatrix-- reallocate to "uint32FMT" x "uint32FMT"\n", aMax, bMax); ^ snapper/thr-polish-dp.C:89:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "dpMatrix-- reallocate to "uint32FMT" x "uint32FMT"\n", aMax, bMax); ^ snapper/thr-polish-dp.C:441:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "doPolish()-- Can't reallocate space for the output string ("uint32FMT" bytes) in thread "uint64FMT"\n", qry->theOutputMax, state->threadID); ^ snapper/thr-polish-dp.C:441:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "doPolish()-- Can't reallocate space for the output string ("uint32FMT" bytes) in thread "uint64FMT"\n", qry->theOutputMax, state->threadID); ^ In file included from snapper/thr-polish-dp.C:1: snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/hitMatrix.o -c snapper/hitMatrix.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/hitMatrix.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/hitMatrix.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/hitMatrix.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/hitMatrix.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from snapper/snapper2.H:20, from snapper/hitMatrix.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from snapper/hitMatrix.C:1: snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ snapper/hitMatrix.C:385:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT".\n", theHitsPos, theHitsMax); ^ snapper/hitMatrix.C:385:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT".\n", theHitsPos, theHitsMax); ^ In file included from snapper/hitMatrix.C:1: snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ snapper/hitMatrix.C: In member function ‘void hitMatrix::filter(char, double, uint32, aHit*&, uint32&, uint32&)’: snapper/hitMatrix.C:383:23: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/hitMatrix-sort.o -c snapper/hitMatrix-sort.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/hitMatrix-sort.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/hitMatrix-sort.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/hitMatrix-sort.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from snapper/snapper2.H:18, from snapper/hitMatrix-sort.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from snapper/snapper2.H:20, from snapper/hitMatrix-sort.C:1: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from snapper/hitMatrix-sort.C:1: snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] } catch (std::bad_alloc) { ^~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o snapper/snapper2 snapper/snapper2.o snapper/configuration.o snapper/thr-search.o snapper/thr-filter.o snapper/thr-polish.o snapper/thr-polish-dp.o snapper/hitMatrix.o snapper/hitMatrix-sort.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libkmer/libkmer.a /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o tapper/tagger.o -c tapper/tagger.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from tapper/tapperTag.H:1, from tapper/tagger.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from tapper/tapperTag.H:1, from tapper/tagger.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from tapper/tapperTag.H:1, from tapper/tagger.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from tapper/tapperTag.H:1, from tapper/tagger.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from tapper/tagger.C:1: tapper/tapperTag.H:204:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tapperTagFile()-- ERROR! Tag file was built with TAPPER_TAG_WORDS="uint32FMT", but code has %d.\n", ^ In file included from tapper/tagger.C:2: tapper/tapperResult.H:41:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ In file included from tapper/tagger.C:2: tapper/tapperResult.H:41:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:155: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:168: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:183: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:198: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:228: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:116:2: warning: #warning do not know real tag length [-Wcpp] #warning do not know real tag length ^~~~~~~ tapper/tapperResult.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:187:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:114: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:151: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:163: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:175: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:187: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:200: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:230: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:242: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ In file included from tapper/tagger.C:2: tapper/tapperResult.H:224:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:146: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:159: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:172: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ In file included from tapper/tagger.C:4: tapper/tapperHit.H:17:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tagger.C:151:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\tlength\t"uint32FMT"\n", tagfile, TF->metaData()->tagSize()); ^ tapper/tagger.C:152:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\tnumMates\t"uint64FMT"\n", tagfile, TF->numberOfMatePairs()); ^ tapper/tagger.C:153:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\tmean\t"uint32FMT"\n", tagfile, TF->metaData()->mean()); ^ tapper/tagger.C:154:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\tstddev\t"uint32FMT"\n", tagfile, TF->metaData()->stddev()); ^ tapper/tagger.C:157:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\tlength\t"uint32FMT"\n", tagfile, TF->metaData()->tagSize()); ^ tapper/tagger.C:158:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s\tnumTags\t"uint64FMT"\n", tagfile, TF->numberOfFragmentTags()); ^ tapper/tagger.C:182:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", ^ tapper/tagger.C:182:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", ^ tapper/tagger.C:182:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", ^ tapper/tagger.C:182:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", ^ tapper/tagger.C:182:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", ^ tapper/tagger.C:182:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", ^ tapper/tagger.C:182:104: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", ^ tapper/tagger.C:182:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", ^ tapper/tagger.C:191:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", ^ tapper/tagger.C:191:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", ^ tapper/tagger.C:191:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", ^ tapper/tagger.C:191:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", ^ tapper/tagger.C:362:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t0\t"uint32FMT"\t%c\t%s%s\t%s\n", ^ tapper/tagger.C:362:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t0\t"uint32FMT"\t%c\t%s%s\t%s\n", ^ tapper/tagger.C:362:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t0\t"uint32FMT"\t%c\t%s%s\t%s\n", ^ tapper/tagger.C:362:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t0\t"uint32FMT"\t%c\t%s%s\t%s\n", ^ tapper/tagger.C:362:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t0\t"uint32FMT"\t%c\t%s%s\t%s\n", ^ tapper/tagger.C: In function ‘bool readTag(uint32, FILE*, FILE*, tapperTag*)’: tapper/tagger.C:52:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(seqhdr, 1024, seq); ~~~~~^~~~~~~~~~~~~~~~~~~ tapper/tagger.C:54:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(seqhdr, 1024, seq); ~~~~~^~~~~~~~~~~~~~~~~~~ tapper/tagger.C:55:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(seqseq, 1024, seq); ~~~~~^~~~~~~~~~~~~~~~~~~ tapper/tagger.C:57:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(qlthdr, 1024, qlt); ~~~~~^~~~~~~~~~~~~~~~~~~ tapper/tagger.C:59:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(qlthdr, 1024, qlt); ~~~~~^~~~~~~~~~~~~~~~~~~ tapper/tagger.C:60:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(qltseq, 1024, qlt); ~~~~~^~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o tapper/tagger tapper/tagger.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libkmer/libkmer.a /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o tapper/tapper.o -c tapper/tapper.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from tapper/tapperTag.H:1, from tapper/tapper.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from tapper/tapperTag.H:1, from tapper/tapper.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from tapper/tapperTag.H:1, from tapper/tapper.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from tapper/tapperTag.H:1, from tapper/tapper.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from tapper/tapper.C:1: tapper/tapperTag.H:204:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tapperTagFile()-- ERROR! Tag file was built with TAPPER_TAG_WORDS="uint32FMT", but code has %d.\n", ^ In file included from tapper/tapper.C:2: tapper/tapperResult.H:41:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ In file included from tapper/tapper.C:2: tapper/tapperResult.H:41:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:155: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:168: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:183: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:198: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:228: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:116:2: warning: #warning do not know real tag length [-Wcpp] #warning do not know real tag length ^~~~~~~ tapper/tapperResult.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:187:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:114: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:151: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:163: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:175: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:187: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:200: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:230: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:242: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ In file included from tapper/tapper.C:2: tapper/tapperResult.H:224:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:146: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:159: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:172: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ In file included from tapper/tapper.C:4: tapper/tapperHit.H:17:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ In file included from tapper/tapperGlobalData.H:1, from tapper/tapper.C:5: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from tapper/tapper.C:5: tapper/tapperGlobalData.H:109:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); ^ tapper/tapperGlobalData.H:109:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); ^ tapper/tapperGlobalData.H:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:120:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:120:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:120:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:144:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); ^ tapper/tapperGlobalData.H:144:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); ^ tapper/tapper.C:633:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Reallocate t->numHappiesMax to "uint32FMT"\n", t->numHappiesMax); ^ tapper/tapper.C:1048:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sizeof(tapperResultIndex) -- "sizetFMT"\n", sizeof(tapperResultIndex)); ^ tapper/tapper.C:1049:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sizeof(tapperResultQV) -- "sizetFMT"\n", sizeof(tapperResultQV)); ^ tapper/tapper.C:1050:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sizeof(tapperResultFragment) -- "sizetFMT"\n", sizeof(tapperResultFragment)); ^ tapper/tapper.C:1051:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sizeof(tapperResultMated) -- "sizetFMT"\n", sizeof(tapperResultMated)); ^ tapper/tapper.C:1052:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sizeof(tapperResultTangled) -- "sizetFMT"\n", sizeof(tapperResultTangled)); ^ tapper/tapper.C:1053:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sizeof(tapperHit) -- "sizetFMT"\n", sizeof(tapperHit)); ^ tapper/tapper.C:1054:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "sizeof(tapperTag) -- "sizetFMT"\n", sizeof(tapperTag)); ^ tapper/tapper.C:1124:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " all alignments. The default is "uint32FMT".\n", g->repeatThreshold); ^ tapper/tapper.C: In member function ‘bool tapperHit::alignToReference(tapperGlobalData*, uint32, uint32, char*, uint32)’: tapper/tapper.C:399:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] if (_colorMismatch + _colorInconsistent > g->maxColorError) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ tapper/tapper.C:415:23: warning: comparison of integer expressions of different signedness: ‘uint32’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] for (uint32 ti=0; ti<_len-1; ti++) { ~~^~~~~~~ In file included from /<>/kmer-0~20150903+r2013/libutil/recordFile.H:6, from /<>/kmer-0~20150903+r2013/libutil/util++.H:39, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from tapper/tapperTag.H:1, from tapper/tapper.C:1: tapper/tapper.C:468:13: warning: comparison of integer expressions of different signedness: ‘uint32’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] assert(nn == _colorMismatch + _colorInconsistent); ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o tapper/tapper tapper/tapper.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libkmer/libkmer.a /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o tapper/tapperconvert.o -c tapper/tapperconvert.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from tapper/tapperTag.H:1, from tapper/tapperconvert.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from tapper/tapperTag.H:1, from tapper/tapperconvert.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from tapper/tapperTag.H:1, from tapper/tapperconvert.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from tapper/tapperTag.H:1, from tapper/tapperconvert.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from tapper/tapperconvert.C:1: tapper/tapperTag.H:204:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tapperTagFile()-- ERROR! Tag file was built with TAPPER_TAG_WORDS="uint32FMT", but code has %d.\n", ^ In file included from tapper/tapperconvert.C:2: tapper/tapperResult.H:41:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ In file included from tapper/tapperconvert.C:2: tapper/tapperResult.H:41:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:155: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:168: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:183: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:198: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:228: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:116:2: warning: #warning do not know real tag length [-Wcpp] #warning do not know real tag length ^~~~~~~ tapper/tapperResult.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:187:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:114: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:151: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:163: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:175: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:187: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:200: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:230: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:242: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ In file included from tapper/tapperconvert.C:2: tapper/tapperResult.H:224:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:146: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:159: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:172: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ In file included from tapper/tapperconvert.C:4: tapper/tapperHit.H:17:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ In file included from tapper/tapperGlobalData.H:1, from tapper/tapperconvert.C:5: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from tapper/tapperconvert.C:5: tapper/tapperGlobalData.H:109:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); ^ tapper/tapperGlobalData.H:109:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); ^ tapper/tapperGlobalData.H:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:120:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:120:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:120:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:144:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); ^ tapper/tapperGlobalData.H:144:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o tapper/tapperconvert tapper/tapperconvert.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libkmer/libkmer.a /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o tapper/tappermerge.o -c tapper/tappermerge.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from tapper/tapperTag.H:1, from tapper/tappermerge.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from tapper/tapperTag.H:1, from tapper/tappermerge.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from tapper/tapperTag.H:1, from tapper/tappermerge.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from tapper/tapperTag.H:1, from tapper/tappermerge.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from tapper/tappermerge.C:1: tapper/tapperTag.H:204:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tapperTagFile()-- ERROR! Tag file was built with TAPPER_TAG_WORDS="uint32FMT", but code has %d.\n", ^ In file included from tapper/tappermerge.C:2: tapper/tapperResult.H:41:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ In file included from tapper/tappermerge.C:2: tapper/tapperResult.H:41:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:155: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:168: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:183: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:198: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:228: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:116:2: warning: #warning do not know real tag length [-Wcpp] #warning do not know real tag length ^~~~~~~ tapper/tapperResult.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:187:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:114: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:151: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:163: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:175: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:187: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:200: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:230: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:242: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ In file included from tapper/tappermerge.C:2: tapper/tapperResult.H:224:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:146: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:159: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:172: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ In file included from tapper/tappermerge.C:4: tapper/tapperHit.H:17:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ In file included from tapper/tapperGlobalData.H:1, from tapper/tappermerge.C:5: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from tapper/tappermerge.C:5: tapper/tapperGlobalData.H:109:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); ^ tapper/tapperGlobalData.H:109:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); ^ tapper/tapperGlobalData.H:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:120:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:120:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:120:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:144:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); ^ tapper/tapperGlobalData.H:144:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o tapper/tappermerge tapper/tappermerge.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libkmer/libkmer.a /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o tapper/tappersort.o -c tapper/tappersort.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from tapper/tappersort.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from tapper/tappersort.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from tapper/tappersort.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from tapper/tappersort.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from tapper/tappersort.C:3: tapper/tapperTag.H:204:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tapperTagFile()-- ERROR! Tag file was built with TAPPER_TAG_WORDS="uint32FMT", but code has %d.\n", ^ In file included from tapper/tappersort.C:4: tapper/tapperResult.H:41:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ In file included from tapper/tappersort.C:4: tapper/tapperResult.H:41:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:155: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:168: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:183: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:198: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:228: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:116:2: warning: #warning do not know real tag length [-Wcpp] #warning do not know real tag length ^~~~~~~ tapper/tapperResult.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:187:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:114: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:151: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:163: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:175: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:187: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:200: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:230: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:242: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ In file included from tapper/tappersort.C:4: tapper/tapperResult.H:224:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:146: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:159: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:172: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ In file included from tapper/tappersort.C:6: tapper/tapperHit.H:17:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ In file included from tapper/tapperGlobalData.H:1, from tapper/tappersort.C:7: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from tapper/tappersort.C:7: tapper/tapperGlobalData.H:109:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); ^ tapper/tapperGlobalData.H:109:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); ^ tapper/tapperGlobalData.H:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:120:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:120:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:120:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:144:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); ^ tapper/tapperGlobalData.H:144:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); ^ tapper/tappersort.C:148:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(filename, "%s."uint32FMTW(03)".tapperAlignment", outputName, outputIndex); ^ tapper/tappersort.C:150:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Writing "uint32FMT" sorted alignments to '%s'\n", aliLen, filename); ^ tapper/tappersort.C:202:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Can fit "uint32FMT" alignments into "uint64FMT" bytes memory; "uint32FMT" bytes each.\n", ^ tapper/tappersort.C:202:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Can fit "uint32FMT" alignments into "uint64FMT" bytes memory; "uint32FMT" bytes each.\n", ^ tapper/tappersort.C:202:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Can fit "uint32FMT" alignments into "uint64FMT" bytes memory; "uint32FMT" bytes each.\n", ^ tapper/tappersort.C:257:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(filename, "%s."uint32FMTW(03)".tapperAlignment", outputName, x); ^ tapper/tappersort.C:299:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(filename, "%s."uint32FMTW(03)".tapperAlignment", outputName, x); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o tapper/tappersort tapper/tappersort.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libkmer/libkmer.a /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libutil/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libkmer/ -I/<>/kmer-0~20150903+r2013/libsim4/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o tapper/tappererrorcorrect.o -c tapper/tappererrorcorrect.C In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:4, from tapper/tappererrorcorrect.C:1: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from tapper/tappererrorcorrect.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from tapper/tappererrorcorrect.C:1: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from tapper/tappererrorcorrect.C:1: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from tapper/tappererrorcorrect.C:3: tapper/tapperTag.H:204:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tapperTagFile()-- ERROR! Tag file was built with TAPPER_TAG_WORDS="uint32FMT", but code has %d.\n", ^ In file included from tapper/tappererrorcorrect.C:4: tapper/tapperResult.H:41:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ In file included from tapper/tappererrorcorrect.C:4: tapper/tapperResult.H:41:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:155: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:168: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:183: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:198: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:41:228: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", ^ tapper/tapperResult.H:116:2: warning: #warning do not know real tag length [-Wcpp] #warning do not know real tag length ^~~~~~~ tapper/tapperResult.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:132:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:155:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", ^ tapper/tapperResult.H:187:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:114: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:151: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:163: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:175: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:187: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:200: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:230: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ tapper/tapperResult.H:187:242: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", ^ In file included from tapper/tappererrorcorrect.C:4: tapper/tapperResult.H:224:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:146: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:159: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ tapper/tapperResult.H:224:172: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", ^ In file included from tapper/tappererrorcorrect.C:6: tapper/tapperHit.H:17:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ tapper/tapperHit.H:17:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ^ In file included from tapper/tapperGlobalData.H:1, from tapper/tappererrorcorrect.C:7: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ In file included from tapper/tappererrorcorrect.C:7: tapper/tapperGlobalData.H:109:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); ^ tapper/tapperGlobalData.H:109:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); ^ tapper/tapperGlobalData.H:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:120:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:120:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:120:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", ^ tapper/tapperGlobalData.H:144:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); ^ tapper/tapperGlobalData.H:144:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); ^ tapper/tappererrorcorrect.C:25:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "block "uint32FMT" has "uint32FMT" things.\n", i, alignsLen[i]); ^ tapper/tappererrorcorrect.C:25:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "block "uint32FMT" has "uint32FMT" things.\n", i, alignsLen[i]); ^ tapper/tappererrorcorrect.C:49:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "block[0] - seq "uint32FMT" pos "uint32FMT"\n", ^ tapper/tappererrorcorrect.C:49:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "block[0] - seq "uint32FMT" pos "uint32FMT"\n", ^ tapper/tappererrorcorrect.C:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "block "uint32FMT" has "uint32FMT" things.\n", alignsMax-1, alignsLen[alignsMax-1]); ^ tapper/tappererrorcorrect.C:62:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "block "uint32FMT" has "uint32FMT" things.\n", alignsMax-1, alignsLen[alignsMax-1]); ^ tapper/tappererrorcorrect.C:160:2: warning: #warning need the real read size here [-Wcpp] #warning need the real read size here ^~~~~~~ tapper/tappererrorcorrect.C:213:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "\nALIGN "uint32FMT"-"uint32FMT"\n", winLo, winHi); ^ tapper/tappererrorcorrect.C:213:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "\nALIGN "uint32FMT"-"uint32FMT"\n", winLo, winHi); ^ tapper/tappererrorcorrect.C: In function ‘int main(int, char**)’: tapper/tappererrorcorrect.C:102:13: warning: variable ‘memoryLimit’ set but not used [-Wunused-but-set-variable] uint64 memoryLimit = 1024 * 1024 * 1024; ^~~~~~~~~~~ tapper/tappererrorcorrect.C:141:21: warning: unused variable ‘id’ [-Wunused-variable] uint16 id[4]; ^~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o tapper/tappererrorcorrect tapper/tappererrorcorrect.o /<>/kmer-0~20150903+r2013/libsim4/libsim4.a /<>/kmer-0~20150903+r2013/libkmer/libkmer.a /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libkmer/driver-existDB.o -c /<>/kmer-0~20150903+r2013/libkmer/driver-existDB.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/libkmer/driver-existDB.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/driver-existDB.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/driver-existDB.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/driver-existDB.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ /<>/kmer-0~20150903+r2013/libkmer/driver-existDB.C:53:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "mer "uint64HEX" not found : e=%d f=%d g=%d\n", m, ee, ef, eg); ^ /<>/kmer-0~20150903+r2013/libkmer/driver-existDB.C:56:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "mer "uint64HEX" count differs : e=%u f=%u g=%u (exists=%d)\n", m, ce, cf, cg, ee); ^ /<>/kmer-0~20150903+r2013/libkmer/driver-existDB.C:65:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "mer "uint64HEX" : e=%u f=%u g=%u (exists=%d)\n", m, ce, cf, cg, ee); ^ /<>/kmer-0~20150903+r2013/libkmer/driver-existDB.C:96:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Tried "uint64FMT", didn't find "uint64FMT" merStream mers in the existDB.\n", tried, lost); ^ /<>/kmer-0~20150903+r2013/libkmer/driver-existDB.C:96:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Tried "uint64FMT", didn't find "uint64FMT" merStream mers in the existDB.\n", tried, lost); ^ /<>/kmer-0~20150903+r2013/libkmer/driver-existDB.C:128:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Found "uint64FMT" mers in the meryl database.\n", expected); ^ /<>/kmer-0~20150903+r2013/libkmer/driver-existDB.C:148:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Expected to find "uint64FMT" mers, but found "uint64FMT" instead.\n", ^ /<>/kmer-0~20150903+r2013/libkmer/driver-existDB.C:148:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Expected to find "uint64FMT" mers, but found "uint64FMT" instead.\n", ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o /<>/kmer-0~20150903+r2013/libkmer/existDB /<>/kmer-0~20150903+r2013/libkmer/driver-existDB.o /<>/kmer-0~20150903+r2013/libkmer/libkmer.a /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/kmer-0~20150903+r2013/libmeryl/ -I/<>/kmer-0~20150903+r2013/libbio/ -I/<>/kmer-0~20150903+r2013/libseq/ -I/<>/kmer-0~20150903+r2013/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.o -c /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C In file included from /<>/kmer-0~20150903+r2013/libbio/bio.h:4, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:14, from /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:6: /<>/kmer-0~20150903+r2013/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64FMT "%"PRIu64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint64HEX "0x%016"PRIx64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int64FMT "%"PRId64 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32FMT "%"PRIu32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint32HEX "0x%08"PRIx32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define int32FMT "%"PRId32 ^ /<>/kmer-0~20150903+r2013/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] #define uint16FMT "%"PRIu16 ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:37, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:38, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:6: /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ /<>/kmer-0~20150903+r2013/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); ^ In file included from /<>/kmer-0~20150903+r2013/libutil/util++.H:43, from /<>/kmer-0~20150903+r2013/libbio/bio++.H:15, from /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:6: /<>/kmer-0~20150903+r2013/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" ^ In file included from /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:8: /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "uint64HEX"\n", m); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "uint64HEX"\n", h); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "uint64HEX"\n", c); ^ /<>/kmer-0~20150903+r2013/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "uint64HEX"\n", r); ^ /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:54:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s @ "uint64FMT"/"uint64FMT": Found "uint64FMT" table entries, and "uint32FMT" matching positions (", ^ /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:54:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s @ "uint64FMT"/"uint64FMT": Found "uint64FMT" table entries, and "uint32FMT" matching positions (", ^ /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:54:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s @ "uint64FMT"/"uint64FMT": Found "uint64FMT" table entries, and "uint32FMT" matching positions (", ^ /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:54:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s @ "uint64FMT"/"uint64FMT": Found "uint64FMT" table entries, and "uint32FMT" matching positions (", ^ /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:68:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Found no matches for mer=%s at pos="uint64FMT"\n", ^ /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:101:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Got a F match for mer=%s at "uint64FMT"/"uint64FMT" (in mers), numMatches="uint64FMT"\n", ^ /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:101:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Got a F match for mer=%s at "uint64FMT"/"uint64FMT" (in mers), numMatches="uint64FMT"\n", ^ /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:101:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Got a F match for mer=%s at "uint64FMT"/"uint64FMT" (in mers), numMatches="uint64FMT"\n", ^ /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:110:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Got a R match for mer=%s at "uint64FMT"/"uint64FMT" (in mers), numMatches="uint64FMT"\n", ^ /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:110:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Got a R match for mer=%s at "uint64FMT"/"uint64FMT" (in mers), numMatches="uint64FMT"\n", ^ /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:110:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Got a R match for mer=%s at "uint64FMT"/"uint64FMT" (in mers), numMatches="uint64FMT"\n", ^ /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:255:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: merbegin="uint64FMT" and merend="uint64FMT" are incompatible.\n", ^ /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:255:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: merbegin="uint64FMT" and merend="uint64FMT" are incompatible.\n", ^ /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:275:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Building table with merSize "uint32FMT", merSkip "uint32FMT"\n", mersize, merskip); ^ /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.C:275:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Building table with merSize "uint32FMT", merSkip "uint32FMT"\n", mersize, merskip); ^ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o /<>/kmer-0~20150903+r2013/libkmer/positionDB /<>/kmer-0~20150903+r2013/libkmer/driver-posDB.o /<>/kmer-0~20150903+r2013/libkmer/libkmer.a /<>/kmer-0~20150903+r2013/libmeryl/libmeryl.a /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o /<>/kmer-0~20150903+r2013/libseq/test-seqCache /<>/kmer-0~20150903+r2013/libseq/test-seqCache.o /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o /<>/kmer-0~20150903+r2013/libseq/test-seqStream /<>/kmer-0~20150903+r2013/libseq/test-seqStream.o /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o /<>/kmer-0~20150903+r2013/libseq/test-merStream /<>/kmer-0~20150903+r2013/libseq/test-merStream.o /<>/kmer-0~20150903+r2013/libseq/libseq.a /<>/kmer-0~20150903+r2013/libbio/libbio.a /<>/kmer-0~20150903+r2013/libutil/libutil.a -pthread -ldl -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/kmer-0~20150903+r2013=. -fstack-protector-strong -Wformat -Werror=format-security -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/kmer-0~20150903+r2013/libutil/mt19937ar/test.o -c /<>/kmer-0~20150903+r2013/libutil/mt19937ar/test.c rm -f /<>/kmer-0~20150903+r2013/libutil/mt19937ar/libmt19937ar.a && ar ruvs /<>/kmer-0~20150903+r2013/libutil/mt19937ar/libmt19937ar.a /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar.o /<>/kmer-0~20150903+r2013/libutil/mt19937ar/test.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/kmer-0~20150903+r2013/libutil/mt19937ar/libmt19937ar.a a - /<>/kmer-0~20150903+r2013/libutil/mt19937ar/mt19937ar.o a - /<>/kmer-0~20150903+r2013/libutil/mt19937ar/test.o rm -f /<>/kmer-0~20150903+r2013/libutil/kazlib/libkaz.a && ar ruvs /<>/kmer-0~20150903+r2013/libutil/kazlib/libkaz.a /<>/kmer-0~20150903+r2013/libutil/kazlib/dict.o /<>/kmer-0~20150903+r2013/libutil/kazlib/except.o /<>/kmer-0~20150903+r2013/libutil/kazlib/hash.o /<>/kmer-0~20150903+r2013/libutil/kazlib/list.o /<>/kmer-0~20150903+r2013/libutil/kazlib/sfx.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/kmer-0~20150903+r2013/libutil/kazlib/libkaz.a a - /<>/kmer-0~20150903+r2013/libutil/kazlib/dict.o a - /<>/kmer-0~20150903+r2013/libutil/kazlib/except.o a - /<>/kmer-0~20150903+r2013/libutil/kazlib/hash.o a - /<>/kmer-0~20150903+r2013/libutil/kazlib/list.o a - /<>/kmer-0~20150903+r2013/libutil/kazlib/sfx.o make[2]: Leaving directory '/<>/kmer-0~20150903+r2013' mv installdir/bin/atac.pl installdir/bin/atac make[1]: Leaving directory '/<>/kmer-0~20150903+r2013' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with python2 dh_testroot -a dh_prep -a dh_auto_install -a make -j4 install DESTDIR=/<>/kmer-0\~20150903\+r2013/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/kmer-0~20150903+r2013' make[1]: Leaving directory '/<>/kmer-0~20150903+r2013' debian/rules override_dh_install make[1]: Entering directory '/<>/kmer-0~20150903+r2013' dh_install for perlscript in `grep -l '#!/usr/bin/env \+perl' debian/*/usr/bin/*` `grep -l '#!/usr/bin/env \+perl' debian/*/usr/lib/atac/bin/*` ; do \ sed -i '1s+#!/usr/bin/env perl+#!/usr/bin/perl+' ${perlscript} ; \ done make[1]: Leaving directory '/<>/kmer-0~20150903+r2013' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_python2 -a I: dh_python2 tools:113: replacing shebang in debian/atac/usr/lib/atac/bin/AtacDriver.py I: dh_python2 tools:113: replacing shebang in debian/atac/usr/lib/atac/lib/AtacDriver.py I: dh_python2 tools:113: replacing shebang in debian/atac/usr/lib/atac/lib/AtacFile.py I: dh_python2 tools:113: replacing shebang in debian/atac/usr/lib/atac/lib/MyFile.py I: dh_python2 tools:113: replacing shebang in debian/atac/usr/lib/atac/lib/PerfectRuns.py I: dh_python2 tools:113: replacing shebang in debian/atac/usr/lib/atac/lib/UniqueFilter.py I: dh_python2 tools:113: replacing shebang in debian/atac/usr/lib/atac/lib/dedashMatches.py I: dh_python2 tools:113: replacing shebang in debian/atac/usr/lib/atac/lib/mkstats.py dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libkmer-dev: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: Depends field of package libmeryl-dev: unknown substitution variable ${shlibs:Depends} dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 141 INFO: pkgstriptranslations version 141 INFO: pkgstriptranslations version 141 INFO: pkgstriptranslations version 141 pkgstriptranslations: processing libkmer-dev (in debian/libkmer-dev); do_strip: , oemstrip: pkgstriptranslations: processing libmeryl-dev (in debian/libmeryl-dev); do_strip: , oemstrip: pkgstriptranslations: processing sim4db (in debian/sim4db); do_strip: , oemstrip: pkgstriptranslations: processing atac-dbgsym (in debian/.debhelper/atac/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libkmer-dev/DEBIAN/control, package libkmer-dev, directory debian/libkmer-dev pkgstripfiles: processing control file: debian/sim4db/DEBIAN/control, package sim4db, directory debian/sim4db INFO: pkgstripfiles: waiting for lock (sim4db) ... Searching for duplicated docs in dependency libmeryl-dev... symlinking changelog.Debian.gz in libkmer-dev to file in libmeryl-dev pkgstripfiles: Running PNG optimization (using 4 cpus) for package libkmer-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libkmer-dev' in '../libkmer-dev_0~20150903+r2013-4_s390x.deb'. INFO: pkgstriptranslations version 141 pkgstriptranslations: processing meryl (in debian/meryl); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/meryl/DEBIAN/control, package meryl, directory debian/meryl pkgstripfiles: Running PNG optimization (using 4 cpus) for package meryl ... pkgstripfiles: No PNG files. dpkg-deb: building package 'meryl' in '../meryl_0~20150903+r2013-4_s390x.deb'. INFO: pkgstripfiles: waiting for lock (sim4db) ... INFO: pkgstriptranslations version 141 pkgstriptranslations: processing meryl-dbgsym (in debian/.debhelper/meryl/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/meryl/dbgsym-root/DEBIAN/control, package meryl-dbgsym, directory debian/.debhelper/meryl/dbgsym-root dpkg-deb: building package 'meryl-dbgsym' in 'debian/.debhelper/scratch-space/build-meryl/meryl-dbgsym_0~20150903+r2013-4_s390x.deb'. INFO: pkgstripfiles: waiting for lock (sim4db) ... Renaming meryl-dbgsym_0~20150903+r2013-4_s390x.deb to meryl-dbgsym_0~20150903+r2013-4_s390x.ddeb INFO: pkgstripfiles: waiting for lock (sim4db) ... INFO: pkgstripfiles: waiting for lock (sim4db) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (sim4db) ... pkgstripfiles: processing control file: debian/libmeryl-dev/DEBIAN/control, package libmeryl-dev, directory debian/libmeryl-dev pkgstripfiles: Running PNG optimization (using 4 cpus) for package libmeryl-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libmeryl-dev' in '../libmeryl-dev_0~20150903+r2013-4_s390x.deb'. pkgstripfiles: processing control file: debian/.debhelper/atac/dbgsym-root/DEBIAN/control, package atac-dbgsym, directory debian/.debhelper/atac/dbgsym-root dpkg-deb: building package 'atac-dbgsym' in 'debian/.debhelper/scratch-space/build-atac/atac-dbgsym_0~20150903+r2013-4_s390x.deb'. INFO: pkgstriptranslations version 141 pkgstriptranslations: processing leaff (in debian/leaff); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/leaff/DEBIAN/control, package leaff, directory debian/leaff pkgstripfiles: Running PNG optimization (using 4 cpus) for package leaff ... pkgstripfiles: No PNG files. dpkg-deb: building package 'leaff' in '../leaff_0~20150903+r2013-4_s390x.deb'. INFO: pkgstriptranslations version 141 pkgstriptranslations: processing leaff-dbgsym (in debian/.debhelper/leaff/dbgsym-root); do_strip: , oemstrip: pkgstripfiles: Running PNG optimization (using 4 cpus) for package sim4db ... pkgstripfiles: No PNG files. dpkg-deb: building package 'sim4db' in '../sim4db_0~20150903+r2013-4_s390x.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/leaff/dbgsym-root/DEBIAN/control, package leaff-dbgsym, directory debian/.debhelper/leaff/dbgsym-root dpkg-deb: building package 'leaff-dbgsym' in 'debian/.debhelper/scratch-space/build-leaff/leaff-dbgsym_0~20150903+r2013-4_s390x.deb'. Renaming leaff-dbgsym_0~20150903+r2013-4_s390x.deb to leaff-dbgsym_0~20150903+r2013-4_s390x.ddeb Renaming atac-dbgsym_0~20150903+r2013-4_s390x.deb to atac-dbgsym_0~20150903+r2013-4_s390x.ddeb INFO: pkgstriptranslations version 141 pkgstriptranslations: processing sim4db-dbgsym (in debian/.debhelper/sim4db/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/sim4db/dbgsym-root/DEBIAN/control, package sim4db-dbgsym, directory debian/.debhelper/sim4db/dbgsym-root dpkg-deb: building package 'sim4db-dbgsym' in 'debian/.debhelper/scratch-space/build-sim4db/sim4db-dbgsym_0~20150903+r2013-4_s390x.deb'. Renaming sim4db-dbgsym_0~20150903+r2013-4_s390x.deb to sim4db-dbgsym_0~20150903+r2013-4_s390x.ddeb INFO: pkgstriptranslations version 141 pkgstriptranslations: processing atac (in debian/atac); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/atac/DEBIAN/control, package atac, directory debian/atac Searching for duplicated docs in dependency leaff... symlinking changelog.Debian.gz in atac to file in leaff Searching for duplicated docs in dependency meryl... pkgstripfiles: Running PNG optimization (using 4 cpus) for package atac ... pkgstripfiles: No PNG files. dpkg-deb: building package 'atac' in '../atac_0~20150903+r2013-4_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../kmer_0~20150903+r2013-4_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build kmer-0~20150903+r2013 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180805-1713 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kmer_0~20150903+r2013-4_s390x.changes: -------------------------------------- Format: 1.8 Date: Sun, 05 Aug 2018 13:37:44 +0200 Source: kmer Binary: kmer libkmer-dev meryl libmeryl-dev leaff sim4db atac Architecture: s390x Version: 0~20150903+r2013-4 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: atac - genome assembly-to-assembly comparison kmer - suite of tools for DNA sequence analysis leaff - biological sequence library utilities and applications libkmer-dev - suite of tools for DNA sequence analysis (development lib) libmeryl-dev - in- and out-of-core kmer counting and utilities (development lib) meryl - in- and out-of-core kmer counting and utilities sim4db - batch spliced alignment of cDNA sequences to a target genome Changes: kmer (0~20150903+r2013-4) unstable; urgency=medium . * Team upload. * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.5 * Fix Perl interpreter path * Fix spelling Checksums-Sha1: 52e0bb0e6435ad3503644adaa022ce7e4b49d1b2 4403040 atac-dbgsym_0~20150903+r2013-4_s390x.ddeb 6712a8147328d390d3e68a7b63d8fd9f7cd83988 3366496 atac_0~20150903+r2013-4_s390x.deb b87b9fd7f3b13b1fa1986dda1fa4d84c6d541d48 8466 kmer_0~20150903+r2013-4_s390x.buildinfo 45479bae179b84bd8098214e205414147a026b9a 227952 leaff-dbgsym_0~20150903+r2013-4_s390x.ddeb bfd1fda72dc772af84ab4b2f1f53af3d78752a3d 64700 leaff_0~20150903+r2013-4_s390x.deb 76a37c5e98105ba52edf02e209f6b0a146a85ebd 193440 libkmer-dev_0~20150903+r2013-4_s390x.deb 1ba39924606ad17c6cef6c08d47c2cc1c2dfa61a 48148 libmeryl-dev_0~20150903+r2013-4_s390x.deb b1770802933adf5c841f501065172f111ad9faa4 2000736 meryl-dbgsym_0~20150903+r2013-4_s390x.ddeb 4f797bd2e28c59f0b46e5cab9a55b94fb3e823af 184256 meryl_0~20150903+r2013-4_s390x.deb d393f8246aeebdc4b0da988f54db46abd67ab6b8 3708016 sim4db-dbgsym_0~20150903+r2013-4_s390x.ddeb 02f687480c6584c7ec63067009cf129450daa4c4 429424 sim4db_0~20150903+r2013-4_s390x.deb Checksums-Sha256: b53327737a1bd3a6bbdb859028e82444a1c583482828544792175ad426c9a748 4403040 atac-dbgsym_0~20150903+r2013-4_s390x.ddeb cfa2c045c2476792908cf5dd4cff6269911c25f576bc6a8cdeaac5e37bae2356 3366496 atac_0~20150903+r2013-4_s390x.deb 831c224f662e08ec97c5fddb7c1a0a12561d9e84077df82ae189bafdc592551b 8466 kmer_0~20150903+r2013-4_s390x.buildinfo 2eed0ddd5dfadaa037db31815a66b58e931984c3070787cd5d74bca8e91ec763 227952 leaff-dbgsym_0~20150903+r2013-4_s390x.ddeb 0ee65a4216a2a56add9b1aa2ecd1ea8e48cca012940392fc2fc2fc56120283e1 64700 leaff_0~20150903+r2013-4_s390x.deb cae0779a6b227a2cd0f0e0cc3923efb671a63940f2f32f28fa5a7402046b7a16 193440 libkmer-dev_0~20150903+r2013-4_s390x.deb bfcfe901da62a09462ca52aff80eb1b421c9dbe90e2b61a105b196e0043b20fd 48148 libmeryl-dev_0~20150903+r2013-4_s390x.deb 960d6ea4b31e5c8c593083e7988442549c86502158b2bf0483dfbe8d298fc88f 2000736 meryl-dbgsym_0~20150903+r2013-4_s390x.ddeb ef60b8bf83771809c97bf7da8cfd42c9c62a7d5cb932fb31e446ce5a6760ed20 184256 meryl_0~20150903+r2013-4_s390x.deb d12615754b4c5635af09d90b6cc2c68a1b9a2b75da3cd4fd8da937fde58ea5ff 3708016 sim4db-dbgsym_0~20150903+r2013-4_s390x.ddeb f8d31561ea43265dcb49e4ecf366b51a64c271edaa434d5831624b0b60d455ee 429424 sim4db_0~20150903+r2013-4_s390x.deb Files: 89f463b9ef7ee2b19c0bc85c50df5c3b 4403040 debug optional atac-dbgsym_0~20150903+r2013-4_s390x.ddeb d96d4e0ba692459696769745ae5085dd 3366496 science optional atac_0~20150903+r2013-4_s390x.deb b1ccbba2256d7ac6aedbb96c2f93e0e7 8466 science optional kmer_0~20150903+r2013-4_s390x.buildinfo af604da4248a539c6eab2c0019727d5c 227952 debug optional leaff-dbgsym_0~20150903+r2013-4_s390x.ddeb 7223d7fad9f1788b891d590c69aaa602 64700 science optional leaff_0~20150903+r2013-4_s390x.deb 9b91f0e1e07b8597111ae1b2a4d04de8 193440 libdevel optional libkmer-dev_0~20150903+r2013-4_s390x.deb fd585f6d9c8aa9f46e700329dfa61a06 48148 libdevel optional libmeryl-dev_0~20150903+r2013-4_s390x.deb bed2254fac9b5015144e8b853cb83e94 2000736 debug optional meryl-dbgsym_0~20150903+r2013-4_s390x.ddeb 8b8f32da0606638ea89317e466520988 184256 science optional meryl_0~20150903+r2013-4_s390x.deb 2b102bbb659ba3ad3606802018fb81b5 3708016 debug optional sim4db-dbgsym_0~20150903+r2013-4_s390x.ddeb 30fb268411edf10f93d6741e1e03dd17 429424 science optional sim4db_0~20150903+r2013-4_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ atac_0~20150903+r2013-4_s390x.deb --------------------------------- new debian package, version 2.0. size 3366496 bytes: control archive=2544 bytes. 1358 bytes, 27 lines control 2880 bytes, 44 lines md5sums 174 bytes, 9 lines * postinst #!/bin/sh 247 bytes, 14 lines * prerm #!/bin/sh Package: atac Source: kmer Version: 0~20150903+r2013-4 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 5829 Depends: libc6 (>= 2.7), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), python2.7, python:any, perl:any, libfile-which-perl, leaff, meryl, gnuplot Section: science Priority: optional Homepage: http://kmer.sourceforge.net Description: genome assembly-to-assembly comparison atac computes a one-to-one pairwise alignment of large DNA sequences. It first finds the unique k-mers in each sequence, chains them to larger blocks, and fills in spaces between blocks. It was written primarily to transfer annotations between different assemblies of the human genome. . The output is a set of ungapped 'matches', and a set of gapped 'runs' formed from the matches. Each match or run associates one sequence with the other sequence. The association is 'unique', in that there is no other (sizeable) associations for either sequence. Thus, large repeats and duplications are not present in the output - they appear as unmapped regions. . Though the output is always pairwise, atac can cache intermediate results to speed a comparisons of multiple sequences. . This package is part of the Kmer suite. drwxr-xr-x root/root 0 2018-08-05 11:37 ./ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/bin/ -rwxr-xr-x root/root 32717 2018-08-05 11:37 ./usr/bin/atac drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/lib/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/lib/atac/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/lib/atac/bin/ -rwxr-xr-x root/root 22448 2018-08-05 11:37 ./usr/lib/atac/bin/AtacDriver.py -rwxr-xr-x root/root 143384 2018-08-05 11:37 ./usr/lib/atac/bin/cleanAtac -rwxr-xr-x root/root 143384 2018-08-05 11:37 ./usr/lib/atac/bin/clumpMaker -rwxr-xr-x root/root 139288 2018-08-05 11:37 ./usr/lib/atac/bin/coalesceMatches -rwxr-xr-x root/root 143384 2018-08-05 11:37 ./usr/lib/atac/bin/correctGaps -rwxr-xr-x root/root 139288 2018-08-05 11:37 ./usr/lib/atac/bin/extractSequence -rwxr-xr-x root/root 155672 2018-08-05 11:37 ./usr/lib/atac/bin/extractUnmapped -rwxr-xr-x root/root 155672 2018-08-05 11:37 ./usr/lib/atac/bin/gapShifter -rwxr-xr-x root/root 26824 2018-08-05 11:37 ./usr/lib/atac/bin/happy-clones-span-clumps -rwxr-xr-x root/root 30736 2018-08-05 11:37 ./usr/lib/atac/bin/heavychains -rwxr-xr-x root/root 10256 2018-08-05 11:37 ./usr/lib/atac/bin/lengthFilter -rwxr-xr-x root/root 10582 2018-08-05 11:37 ./usr/lib/atac/bin/makeplot.pl -rwxr-xr-x root/root 159800 2018-08-05 11:37 ./usr/lib/atac/bin/matchExtender -rwxr-xr-x root/root 143384 2018-08-05 11:37 ./usr/lib/atac/bin/mismatchCounter -rwxr-xr-x root/root 192536 2018-08-05 11:37 ./usr/lib/atac/bin/overlap -rwxr-xr-x root/root 143384 2018-08-05 11:37 ./usr/lib/atac/bin/projectFeatures -rwxr-xr-x root/root 299832 2018-08-05 11:37 ./usr/lib/atac/bin/seatac -rwxr-xr-x root/root 204832 2018-08-05 11:37 ./usr/lib/atac/bin/statsGenerator -rwxr-xr-x root/root 139288 2018-08-05 11:37 ./usr/lib/atac/bin/testAtac -rwxr-xr-x root/root 176184 2018-08-05 11:37 ./usr/lib/atac/bin/uniqueFilter drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/lib/atac/lib/ -rwxr-xr-x root/root 22448 2018-08-05 11:37 ./usr/lib/atac/lib/AtacDriver.py -rwxr-xr-x root/root 2869 2018-08-05 11:37 ./usr/lib/atac/lib/AtacFile.py -rw-r--r-- root/root 2140 2005-02-28 22:49 ./usr/lib/atac/lib/DNA.py -rw-r--r-- root/root 6418 2007-01-02 22:17 ./usr/lib/atac/lib/IdxStore.py -rw-r--r-- root/root 7823 2005-03-14 03:56 ./usr/lib/atac/lib/MatchRecord.py -rwxr-xr-x root/root 2702 2018-08-05 11:37 ./usr/lib/atac/lib/MyFile.py -rwxr-xr-x root/root 8989 2018-08-05 11:37 ./usr/lib/atac/lib/PerfectRuns.py -rw-r--r-- root/root 11008 2005-12-04 08:34 ./usr/lib/atac/lib/TrimMatchOverlaps.py -rwxr-xr-x root/root 10873 2018-08-05 11:37 ./usr/lib/atac/lib/UniqueFilter.py -rwxr-xr-x root/root 4789 2018-08-05 11:37 ./usr/lib/atac/lib/dedashMatches.py -rw-r--r-- root/root 15418 2007-01-02 22:17 ./usr/lib/atac/lib/fillIntraRunGaps.py -rw-r--r-- root/root 30576 2018-08-05 11:37 ./usr/lib/atac/lib/filter-heavychains.so -rw-r--r-- root/root 10096 2018-08-05 11:37 ./usr/lib/atac/lib/filter-nop.so -rw-r--r-- root/root 18296 2018-08-05 11:37 ./usr/lib/atac/lib/halignmodule.so -rw-r--r-- root/root 120864 2018-08-05 11:37 ./usr/lib/atac/lib/localAlignerInterfacemodule.so -rwxr-xr-x root/root 2622 2018-08-05 11:37 ./usr/lib/atac/lib/mkstats.py -rw-r--r-- root/root 21162 2007-01-02 22:17 ./usr/lib/atac/lib/squeezeIntraRunGaps.py drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/doc/atac/ -rw-r--r-- root/root 3178 2018-08-05 11:37 ./usr/share/doc/atac/README.atac -rw-r--r-- root/root 445 2018-08-05 11:37 ./usr/share/doc/atac/atac-unit-test lrwxrwxrwx root/root 0 2018-08-05 11:37 ./usr/share/doc/atac/changelog.Debian.gz -> ../leaff/changelog.Debian.gz -rw-r--r-- root/root 6250 2018-08-05 11:37 ./usr/share/doc/atac/copyright -rw-r--r-- root/root 2999246 2018-08-05 11:37 ./usr/share/doc/atac/test_data.tar.gz drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/man/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/man/man1/ -rw-r--r-- root/root 704 2018-08-05 11:37 ./usr/share/man/man1/atac.1.gz drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/python/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/python/runtime.d/ -rwxr-xr-x root/root 121 2018-08-05 11:37 ./usr/share/python/runtime.d/atac.rtupdate leaff_0~20150903+r2013-4_s390x.deb ---------------------------------- new debian package, version 2.0. size 64700 bytes: control archive=900 bytes. 709 bytes, 17 lines control 320 bytes, 5 lines md5sums Package: leaff Source: kmer Version: 0~20150903+r2013-4 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 201 Depends: libc6 (>= 2.7), libgcc1 (>= 1:3.0), libstdc++6 (>= 5) Section: science Priority: optional Homepage: http://kmer.sourceforge.net Description: biological sequence library utilities and applications LEAFF (Let's Extract Anything From Fasta) is a utility program for working with multi-fasta files. In addition to providing random access to the base level, it includes several analysis functions. . This package is part of the Kmer suite. drwxr-xr-x root/root 0 2018-08-05 11:37 ./ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/bin/ -rwxr-xr-x root/root 180328 2018-08-05 11:37 ./usr/bin/leaff drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/doc/leaff/ -rw-r--r-- root/root 3373 2011-01-20 03:32 ./usr/share/doc/leaff/README.leaff.gz -rw-r--r-- root/root 1018 2018-08-05 11:37 ./usr/share/doc/leaff/changelog.Debian.gz -rw-r--r-- root/root 6250 2018-08-05 11:37 ./usr/share/doc/leaff/copyright drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/man/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/man/man1/ -rw-r--r-- root/root 2734 2018-08-05 11:37 ./usr/share/man/man1/leaff.1.gz libkmer-dev_0~20150903+r2013-4_s390x.deb ---------------------------------------- new debian package, version 2.0. size 193440 bytes: control archive=2168 bytes. 714 bytes, 18 lines control 3640 bytes, 53 lines md5sums Package: libkmer-dev Source: kmer Version: 0~20150903+r2013-4 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 892 Depends: libmeryl-dev Section: libdevel Priority: optional Homepage: http://kmer.sourceforge.net Description: suite of tools for DNA sequence analysis (development lib) The kmer package is a suite of tools for DNA sequence analysis. It provides tools for searching (ESTs, mRNAs, sequencing reads); aligning (ESTs, mRNAs, whole genomes); and a variety of analyses based on kmers. . This package contains headers and static libraries for kmer. drwxr-xr-x root/root 0 2018-08-05 11:37 ./ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/include/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/include/kmer/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/include/kmer/bio/ -rw-r--r-- root/root 647 2008-07-28 21:43 ./usr/include/kmer/bio/alphabet.h -rw-r--r-- root/root 381 2008-09-09 23:55 ./usr/include/kmer/bio/bio++.H -rw-r--r-- root/root 766 2014-04-11 20:17 ./usr/include/kmer/bio/bio.h -rw-r--r-- root/root 5588 2014-04-11 20:17 ./usr/include/kmer/bio/kmer.H -rw-r--r-- root/root 10979 2014-04-11 20:17 ./usr/include/kmer/bio/kmerhuge.H -rw-r--r-- root/root 2715 2014-04-11 20:17 ./usr/include/kmer/bio/kmeriface.H -rw-r--r-- root/root 3402 2014-04-11 20:17 ./usr/include/kmer/bio/kmertiny.H -rw-r--r-- root/root 7314 2014-04-11 20:17 ./usr/include/kmer/bio/merCovering.H -rw-r--r-- root/root 2024 2014-04-11 20:17 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./usr/include/kmer/seq/seqFactory.H -rw-r--r-- root/root 1516 2014-08-23 02:01 ./usr/include/kmer/seq/seqFile.H -rw-r--r-- root/root 3046 2014-04-11 20:17 ./usr/include/kmer/seq/seqStore.H -rw-r--r-- root/root 3705 2014-04-11 20:17 ./usr/include/kmer/seq/seqStream.H -rw-r--r-- root/root 2591 2014-04-11 20:17 ./usr/include/kmer/seq/sffFile.H -rw-r--r-- root/root 3714 2014-04-11 20:17 ./usr/include/kmer/seq/test-correctSequence.H drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/include/kmer/util/ -rw-r--r-- root/root 4720 2014-04-11 20:17 ./usr/include/kmer/util/bigQueue.H -rw-r--r-- root/root 4475 2014-04-11 20:17 ./usr/include/kmer/util/bitOperations.h -rw-r--r-- root/root 7072 2014-04-11 20:17 ./usr/include/kmer/util/bitPackedArray.H -rw-r--r-- root/root 2734 2014-04-11 20:17 ./usr/include/kmer/util/bitPackedFile.H -rw-r--r-- root/root 13015 2014-04-11 20:17 ./usr/include/kmer/util/bitPacking.h -rw-r--r-- root/root 1395 2014-04-11 20:17 ./usr/include/kmer/util/bzipBuffer.H -rw-r--r-- root/root 737 2014-04-11 20:17 ./usr/include/kmer/util/eliasDeltaEncoding.h -rw-r--r-- root/root 702 2014-04-11 20:17 ./usr/include/kmer/util/eliasGammaEncoding.h -rw-r--r-- root/root 1365 2014-04-11 20:17 ./usr/include/kmer/util/endianess.H -rw-r--r-- root/root 3558 2014-04-11 20:17 ./usr/include/kmer/util/fibonacciEncoding.h -rw-r--r-- root/root 3234 2014-04-11 20:17 ./usr/include/kmer/util/generalizedUnaryEncoding.h -rw-r--r-- root/root 16331 2015-04-22 22:49 ./usr/include/kmer/util/intervalList.H -rw-r--r-- root/root 2599 2014-04-11 20:17 ./usr/include/kmer/util/logMsg.H -rw-r--r-- root/root 1829 2014-04-11 20:17 ./usr/include/kmer/util/readBuffer.H -rw-r--r-- root/root 1614 2014-04-11 20:17 ./usr/include/kmer/util/recordFile.H -rw-r--r-- root/root 2012 2014-04-11 20:17 ./usr/include/kmer/util/speedCounter.H -rw-r--r-- root/root 2758 2014-04-11 20:17 ./usr/include/kmer/util/splitToWords.H -rw-r--r-- root/root 2654 2014-04-11 20:17 ./usr/include/kmer/util/sweatShop.H -rw-r--r-- 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./usr/share/doc/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/doc/libkmer-dev/ lrwxrwxrwx root/root 0 2018-08-05 11:37 ./usr/share/doc/libkmer-dev/changelog.Debian.gz -> ../libmeryl-dev/changelog.Debian.gz -rw-r--r-- root/root 6250 2018-08-05 11:37 ./usr/share/doc/libkmer-dev/copyright libmeryl-dev_0~20150903+r2013-4_s390x.deb ----------------------------------------- new debian package, version 2.0. size 48148 bytes: control archive=1028 bytes. 989 bytes, 22 lines control 411 bytes, 6 lines md5sums Package: libmeryl-dev Source: kmer Version: 0~20150903+r2013-4 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 192 Section: libdevel Priority: optional Homepage: http://kmer.sourceforge.net Description: in- and out-of-core kmer counting and utilities (development lib) meryl computes the kmer content of genomic sequences. Kmer content is represented as a list of kmers and the number of times each occurs in the input sequences. The kmer can be restricted to only the forward kmer, only the reverse kmer, or the canonical kmer (lexicographically smaller of the forward and reverse kmer at each location). Meryl can report the histogram of counts, the list of kmers and their counts, or can perform mathematical and set operations on the processed data files. . This package contains the static libraries and header files. drwxr-xr-x root/root 0 2018-08-05 11:37 ./ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/include/ -rw-r--r-- root/root 5822 2014-04-11 20:17 ./usr/include/libmeryl.H -rw-r--r-- root/root 3420 2015-05-29 12:35 ./usr/include/meryl.H drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/lib/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/lib/s390x-linux-gnu/ -rw-r--r-- root/root 44716 2018-08-05 11:37 ./usr/lib/s390x-linux-gnu/libmeryl.a drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/lib/s390x-linux-gnu/meryl/ -rw-r--r-- root/root 122588 2018-08-05 11:37 ./usr/lib/s390x-linux-gnu/meryl/libmerylguts.a drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/doc/libmeryl-dev/ -rw-r--r-- root/root 1018 2018-08-05 11:37 ./usr/share/doc/libmeryl-dev/changelog.Debian.gz -rw-r--r-- root/root 6250 2018-08-05 11:37 ./usr/share/doc/libmeryl-dev/copyright meryl_0~20150903+r2013-4_s390x.deb ---------------------------------- new debian package, version 2.0. size 184256 bytes: control archive=1344 bytes. 1034 bytes, 24 lines control 1036 bytes, 17 lines md5sums Package: meryl Source: kmer Version: 0~20150903+r2013-4 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1537 Depends: libc6 (>= 2.7), libgcc1 (>= 1:3.0), libstdc++6 (>= 5) Suggests: gridengine-client Section: science Priority: optional Homepage: http://kmer.sourceforge.net Description: in- and out-of-core kmer counting and utilities meryl computes the kmer content of genomic sequences. Kmer content is represented as a list of kmers and the number of times each occurs in the input sequences. The kmer can be restricted to only the forward kmer, only the reverse kmer, or the canonical kmer (lexicographically smaller of the forward and reverse kmer at each location). Meryl can report the histogram of counts, the list of kmers and their counts, or can perform mathematical and set operations on the processed data files. . This package is part of the Kmer suite. drwxr-xr-x root/root 0 2018-08-05 11:37 ./ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/bin/ -rwxr-xr-x root/root 209672 2018-08-05 11:37 ./usr/bin/existDB -rwxr-xr-x root/root 230144 2018-08-05 11:37 ./usr/bin/kmer-mask -rwxr-xr-x root/root 209664 2018-08-05 11:37 ./usr/bin/mapMers -rwxr-xr-x root/root 209664 2018-08-05 11:37 ./usr/bin/mapMers-depth -rwxr-xr-x root/root 230144 2018-08-05 11:37 ./usr/bin/meryl -rwxr-xr-x root/root 275240 2018-08-05 11:37 ./usr/bin/positionDB -rwxr-xr-x root/root 176896 2018-08-05 11:37 ./usr/bin/simple drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/doc/meryl/ -rw-r--r-- root/root 2684 2015-05-20 07:56 ./usr/share/doc/meryl/README.meryl.gz -rw-r--r-- root/root 1018 2018-08-05 11:37 ./usr/share/doc/meryl/changelog.Debian.gz -rw-r--r-- root/root 6250 2018-08-05 11:37 ./usr/share/doc/meryl/copyright drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/man/ drwxr-xr-x root/root 0 2018-08-05 11:37 ./usr/share/man/man1/ -rw-r--r-- root/root 634 2018-08-05 11:37 ./usr/share/man/man1/existDB.1.gz -rw-r--r-- root/root 1069 2018-08-05 11:37 ./usr/share/man/man1/kmer-mask.1.gz -rw-r--r-- root/root 484 2018-08-05 11:37 ./usr/share/man/man1/mapMers-depth.1.gz -rw-r--r-- root/root 388 2018-08-05 11:37 ./usr/share/man/man1/mapMers.1.gz -rw-r--r-- root/root 2669 2018-08-05 11:37 ./usr/share/man/man1/meryl.1.gz -rw-r--r-- root/root 672 2018-08-05 11:37 ./usr/share/man/man1/positionDB.1.gz -rw-r--r-- root/root 511 2018-08-05 11:37 ./usr/share/man/man1/simple.1.gz sim4db_0~20150903+r2013-4_s390x.deb ----------------------------------- new debian package, version 2.0. size 429424 bytes: control archive=2108 bytes. 1614 bytes, 31 lines control 3412 bytes, 52 lines md5sums Package: sim4db Source: kmer Version: 0~20150903+r2013-4 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3477 Depends: libc6 (>= 2.7), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2) Recommends: leaff Section: science Priority: optional Homepage: http://kmer.sourceforge.net Description: batch spliced alignment of cDNA sequences to a target genome Sim4db performs fast batch alignment of large cDNA (EST, mRNA) sequence sets to a set of eukaryotic genomic regions. It uses the sim4 and sim4cc algorithms to determine the alignments, but incorporates a fast sequence indexing and retrieval mechanism, implemented in the sister package 'leaff', to speedily process large volumes of sequences. . While sim4db produces alignments in the same way as sim4 or sim4cc, it has additional features to make it more amenable for use with whole-genome annotation pipelines. A script file can be used to group pairings between cDNAs and their corresponding genomic regions, to be aligned as one run and using the same set of parameters. Sim4db also optionally reports more than one alignment for the same cDNA within a genomic region, as long as they meet user-defined criteria such as minimum length, percentage sequence identity or coverage. This feature is instrumental in finding all alignments of a gene family at one locus. Lastly, the output is presented either as custom sim4db alignments or as GFF3 gene features. . 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+------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 221868 Build-Time: 132 Distribution: cosmic-proposed Host Architecture: s390x Install-Time: 12 Job: kmer_0~20150903+r2013-4.dsc Machine Architecture: s390x Package: kmer Package-Time: 146 Source-Version: 0~20150903+r2013-4 Space: 221868 Status: successful Version: 0~20150903+r2013-4 -------------------------------------------------------------------------------- Finished at 20180805-1713 Build needed 00:02:26, 221868k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-15232606 Scanning for processes to kill in build PACKAGEBUILD-15232606