https://launchpad.net/ubuntu/+source/kmer/0~20150903+r2013-8build4/+build/27660874 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos01-arm64-011 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:53:38 UTC 2023 aarch64 Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 19 Jan 19:51:16 ntpdate[1824]: adjust time server 10.211.37.1 offset -0.001384 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27660874 --image-type chroot /home/buildd/filecache-default/0aaa0d191106d33e51979a9c6a062e50b7f5b3b2 Creating target for build PACKAGEBUILD-27660874 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27660874 Starting target for build PACKAGEBUILD-27660874 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27660874 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27660874 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27660874 Updating target for build PACKAGEBUILD-27660874 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [256 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 Packages [1385 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 Packages [15.2 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6019 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [178 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [68.9 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [807 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [338 kB] Fetched 25.1 MB in 3s (7872 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.36 libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.38 libunistring5 perl-modules-5.38 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-aarch64-linux-gnu binutils-common bsdextrautils bsdutils coreutils cpp cpp-13 debconf debconf-i18n debianutils diffutils dpkg dpkg-dev fakeroot g++ g++-13 gcc gcc-13 gcc-13-base grep init init-system-helpers krb5-locales libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgprofng0 libgssapi-krb5-2 libhwasan0 libidn2-0 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblsan0 liblzma5 libmd0 libmount1 libncursesw6 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libproc2-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.36 pinentry-curses procps psmisc readline-common sed systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring usrmerge util-linux uuid-runtime xz-utils zlib1g 149 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 116 MB of archives. After this operation, 56.5 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.38-3ubuntu1 [1573 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.38-3ubuntu1 [19.4 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-common all 1.3.4+ds-1build1 [8566 B] Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libgssapi-krb5-2 arm64 1.20.1-5build1 [139 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libkrb5-3 arm64 1.20.1-5build1 [347 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libk5crypto3 arm64 1.20.1-5build1 [85.5 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libkrb5support0 arm64 1.20.1-5build1 [33.5 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libssl3 arm64 3.0.10-1ubuntu3 [1752 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc3 arm64 1.3.4+ds-1build1 [99.3 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl2 arm64 1.3.0-3 [40.9 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcrypt1 arm64 1:4.4.36-4 [100 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.6.0-14.14 [1554 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcc1-0 arm64 13.2.0-10ubuntu1 [49.5 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgprofng0 arm64 2.41.90.20240115-1ubuntu1 [777 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libctf0 arm64 2.41.90.20240115-1ubuntu1 [95.8 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libctf-nobfd0 arm64 2.41.90.20240115-1ubuntu1 [99.5 kB] Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 binutils-aarch64-linux-gnu arm64 2.41.90.20240115-1ubuntu1 [3296 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libbinutils arm64 2.41.90.20240115-1ubuntu1 [767 kB] Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 binutils-common arm64 2.41.90.20240115-1ubuntu1 [238 kB] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 binutils arm64 2.41.90.20240115-1ubuntu1 [18.0 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gcc-13-base arm64 13.2.0-10ubuntu1 [46.2 kB] Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgcc-s1 arm64 13.2.0-10ubuntu1 [46.6 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgomp1 arm64 13.2.0-10ubuntu1 [139 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libitm1 arm64 13.2.0-10ubuntu1 [27.9 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libatomic1 arm64 13.2.0-10ubuntu1 [11.6 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libasan8 arm64 13.2.0-10ubuntu1 [2742 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 liblsan0 arm64 13.2.0-10ubuntu1 [1185 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtsan2 arm64 13.2.0-10ubuntu1 [2630 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libubsan1 arm64 13.2.0-10ubuntu1 [1090 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libhwasan0 arm64 13.2.0-10ubuntu1 [1243 kB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 g++-13 arm64 13.2.0-10ubuntu1 [10.9 MB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libstdc++-13-dev arm64 13.2.0-10ubuntu1 [2319 kB] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgcc-13-dev arm64 13.2.0-10ubuntu1 [2463 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gcc-13 arm64 13.2.0-10ubuntu1 [19.1 MB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 cpp-13 arm64 13.2.0-10ubuntu1 [9536 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libstdc++6 arm64 13.2.0-10ubuntu1 [732 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g arm64 1:1.3.dfsg-3ubuntu1 [61.6 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsframe1 arm64 2.41.90.20240115-1ubuntu1 [14.1 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libzstd1 arm64 1.5.5+dfsg2-2 [270 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libc6 arm64 2.38-3ubuntu1 [2740 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 base-files arm64 13ubuntu6 [84.1 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 debianutils arm64 5.16 [93.7 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 bash arm64 5.2.21-2ubuntu1 [777 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 bsdutils arm64 1:2.39.2-6ubuntu1 [96.9 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 coreutils arm64 9.4-2ubuntu2 [1715 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 diffutils arm64 1:3.10-1 [174 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libgpg-error-l10n all 1.47-3build1 [8024 B] Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgpg-error0 arm64 1.47-3build1 [69.9 kB] Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgcrypt20 arm64 1.10.3-2 [472 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma5 arm64 5.4.5-0.3 [140 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libacl1 arm64 2.3.1-4ubuntu1 [19.4 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libapparmor1 arm64 4.0.0~alpha2-0ubuntu7 [48.7 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libaudit-common all 1:3.1.2-1 [5512 B] Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libcap-ng0 arm64 0.8.4-1 [16.4 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libaudit1 arm64 1:3.1.2-1 [47.0 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libblkid1 arm64 2.39.2-6ubuntu1 [121 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libkmod2 arm64 30+20230601-2ubuntu1 [49.8 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-8-0 arm64 10.42-4ubuntu1 [211 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libselinux1 arm64 3.5-1build2 [78.4 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libmount1 arm64 2.39.2-6ubuntu1 [132 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtext-iconv-perl arm64 1.7-8build1 [13.0 kB] Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtext-charwidth-perl arm64 0.04-11build1 [9316 B] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 perl-modules-5.38 all 5.38.2-3 [3110 kB] Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libperl5.38 arm64 5.38.2-3 [4772 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 perl arm64 5.38.2-3 [231 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 perl-base arm64 5.38.2-3 [1777 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 liblocale-gettext-perl arm64 1.07-6build1 [15.0 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 perl-modules-5.36 all 5.36.0-10ubuntu1 [2984 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libperl5.36 arm64 5.36.0-10ubuntu1 [4673 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdb5.3 arm64 5.3.28+dfsg2-4 [718 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgdbm6 arm64 1.23-5 [33.8 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libgdbm-compat4 arm64 1.23-5 [6302 B] Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 debconf-i18n all 1.5.83 [238 kB] Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 debconf all 1.5.83 [147 kB] Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpam0g arm64 1.5.2-9.1ubuntu2 [65.8 kB] Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libseccomp2 arm64 2.5.4-2ubuntu1 [50.1 kB] Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd-sysv arm64 255.2-3ubuntu1 [12.5 kB] Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd-dev all 255.2-3ubuntu1 [107 kB] Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd arm64 255.2-3ubuntu1 [3944 kB] Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsystemd-shared arm64 255.2-3ubuntu1 [2452 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libargon2-1 arm64 0~20190702+dfsg-4 [20.5 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libuuid1 arm64 2.39.2-6ubuntu1 [34.3 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libcryptsetup12 arm64 2:2.6.1-6ubuntu1 [240 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libfdisk1 arm64 2.39.2-6ubuntu1 [141 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 mount arm64 2.39.2-6ubuntu1 [116 kB] Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsystemd0 arm64 255.2-3ubuntu1 [489 kB] Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libudev1 arm64 255.2-3ubuntu1 [187 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libxxhash0 arm64 0.8.2-2 [21.2 kB] Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libapt-pkg6.0 arm64 2.7.10 [929 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 tar arm64 1.35+dfsg-3 [248 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 dpkg arm64 1.22.2ubuntu2 [1290 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 grep arm64 3.11-4 [174 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 login arm64 1:4.13+dfsg1-3ubuntu1 [200 kB] Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 ncurses-bin arm64 6.4+20240113-1 [186 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 sed arm64 4.9-2 [201 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 util-linux arm64 2.39.2-6ubuntu1 [1113 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libdebconfclient0 arm64 0.271ubuntu1 [11.2 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 base-passwd arm64 3.6.3 [51.1 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libc-bin arm64 2.38-3ubuntu1 [590 kB] Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 ncurses-base all 6.4+20240113-1 [25.4 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 sysvinit-utils arm64 3.08-3ubuntu1 [33.3 kB] Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 apt arm64 2.7.10 [1333 kB] Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 apt-utils arm64 2.7.10 [205 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libffi8 arm64 3.4.4-2 [22.2 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libp11-kit0 arm64 0.25.3-2ubuntu2 [274 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libunistring5 arm64 1.1-2 [528 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libidn2-0 arm64 2.3.4-1build1 [65.3 kB] Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgnutls30 arm64 3.8.1-4ubuntu7 [938 kB] Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpam-modules-bin arm64 1.5.2-9.1ubuntu2 [47.0 kB] Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpam-modules arm64 1.5.2-9.1ubuntu2 [284 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 init arm64 1.66ubuntu1 [6186 B] Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsmartcols1 arm64 2.39.2-6ubuntu1 [62.9 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 uuid-runtime arm64 2.39.2-6ubuntu1 [32.3 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libattr1 arm64 1:2.5.1-5 [12.7 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libmd0 arm64 1.1.0-2 [24.7 kB] Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpam-runtime all 1.5.2-9.1ubuntu2 [40.6 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsemanage-common all 3.5-1build1 [9982 B] Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libsepol2 arm64 3.5-2 [289 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsemanage2 arm64 3.5-1build1 [90.0 kB] Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libncursesw6 arm64 6.4+20240113-1 [145 kB] Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtinfo6 arm64 6.4+20240113-1 [104 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 passwd arm64 1:4.13+dfsg1-3ubuntu1 [837 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libproc2-0 arm64 2:4.0.4-2ubuntu1 [56.5 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 mawk arm64 1.3.4.20231126-1 [123 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 procps arm64 2:4.0.4-2ubuntu1 [706 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 usrmerge all 38ubuntu1 [58.8 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 krb5-locales all 1.20.1-5build1 [13.7 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 readline-common all 8.2-3 [56.2 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline8 arm64 8.2-3 [152 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libsqlite3-0 arm64 3.44.2-1 [691 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 openssl arm64 3.0.10-1ubuntu3 [1168 kB] Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 tzdata all 2023d-1ubuntu2 [321 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 bash-completion all 1:2.11-8 [180 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 bsdextrautils arm64 2.39.2-6ubuntu1 [71.4 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libpng16-16 arm64 1.6.40-3 [203 kB] Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 psmisc arm64 23.6-2 [178 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 xz-utils arm64 5.4.5-0.3 [277 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-2ubuntu1 [1108 B] Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-2ubuntu1 [5192 B] Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-2ubuntu1 [29.0 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 dpkg-dev all 1.22.2ubuntu2 [1168 kB] Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 libdpkg-perl all 1.22.2ubuntu2 [321 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 lto-disabled-list all 45 [12.4 kB] Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 libfakeroot arm64 1.32.2-1 [32.0 kB] Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 fakeroot arm64 1.32.2-1 [66.7 kB] Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 optipng arm64 0.7.7-3 [82.1 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 pinentry-curses arm64 1.2.1-3ubuntu1 [34.0 kB] Preconfiguring packages ... 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Setting up binutils (2.41.90.20240115-1ubuntu1) ... Setting up perl (5.38.2-3) ... Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... Setting up gcc-13 (13.2.0-10ubuntu1) ... Setting up libdpkg-perl (1.22.2ubuntu2) ... Setting up libnsl2:arm64 (1.3.0-3) ... Setting up gcc (4:13.2.0-2ubuntu1) ... Setting up dpkg-dev (1.22.2ubuntu2) ... Setting up libnsl-dev:arm64 (1.3.0-3) ... Setting up libc6-dev:arm64 (2.38-3ubuntu1) ... Setting up libstdc++-13-dev:arm64 (13.2.0-10ubuntu1) ... Setting up g++-13 (13.2.0-10ubuntu1) ... Setting up g++ (4:13.2.0-2ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for debianutils (5.16) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27660874 arm64 noble-proposed -c chroot:build-PACKAGEBUILD-27660874 --arch=arm64 --dist=noble-proposed --nolog 'kmer_0~20150903+r2013-8build4.dsc' Initiating build PACKAGEBUILD-27660874 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:53:38 UTC 2023 aarch64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos01-arm64-011.buildd +==============================================================================+ | kmer 0~20150903+r2013-8build4 (arm64) Fri, 19 Jan 2024 19:52:36 +0000 | +==============================================================================+ Package: kmer Version: 0~20150903+r2013-8build4 Source Version: 0~20150903+r2013-8build4 Distribution: noble-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27660874/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/kmer-3ZmyU4/resolver-AKV10l' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- kmer_0~20150903+r2013-8build4.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/kmer-3ZmyU4/kmer-0~20150903+r2013' with '<>' I: NOTICE: Log filtering will replace 'build/kmer-3ZmyU4' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), dh-exec, dh-python, python3-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), dh-exec, dh-python, python3-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [386 B] Get:5 copy:/<>/apt_archive ./ Packages [470 B] Fetched 1813 B in 0s (78.8 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libicu74 libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc libmagic1 libpipeline1 libpython3-dev libpython3-stdlib libpython3.12 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types netbase po-debconf python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.12 python3.12-dev python3.12-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build python3-installer python3-wheel gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc python3.12-venv python3.12-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libicu74 libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc libmagic1 libpipeline1 libpython3-dev libpython3-stdlib libpython3.12 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types netbase po-debconf python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.12 python3.12-dev python3.12-minimal sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 57 newly installed, 0 to remove and 0 not upgraded. Need to get 35.5 MB of archives. After this operation, 141 MB of additional disk space will be used. 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arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libsub-override-perl all 0.10-1 [10.0 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libdw1 arm64 0.190-1 [254 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 debugedit arm64 1:5.0-5 [45.9 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 dwz arm64 0.15-1 [110 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 gettext arm64 0.21-14 [843 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 debhelper all 13.11.9ubuntu1 [968 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http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12-dev arm64 3.12.1-2 [5392 kB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpython3-dev arm64 3.12.1-0ubuntu1 [9924 B] Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 python3.12-dev arm64 3.12.1-2 [506 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-dev arm64 3.12.1-0ubuntu1 [26.7 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 dh-exec arm64 0.28 [24.7 kB] Preconfiguring packages ... Fetched 35.5 MB in 2s (17.5 MB/s) Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... 15802 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.1-2_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.1-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-2_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-2) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.1-2_arm64.deb ... Unpacking python3.12-minimal (3.12.1-2) ... Setting up libpython3.12-minimal:arm64 (3.12.1-2) ... Setting up libexpat1:arm64 (2.5.0-2) ... Setting up python3.12-minimal (3.12.1-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 16120 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.12.1-0ubuntu1_arm64.deb ... 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Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libmagic-mgc (1:5.45-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.9ubuntu1) ... Setting up libmagic1:arm64 (1:5.45-2) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2) ... Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:arm64 (2.5.0-2) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up libicu74:arm64 (74.2-1ubuntu1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... Setting up libuchardet0:arm64 (0.0.8-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libelf1:arm64 (0.190-1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3build3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libdw1:arm64 (0.190-1) ... Setting up gettext (0.21-14) ... Setting up libpython3.12-stdlib:arm64 (3.12.1-2) ... Setting up libtool (2.4.7-7) ... Setting up python3.12 (3.12.1-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-sphinxdoc (7.2.6-3) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up debugedit (1:5.0-5) ... Setting up libpython3.12:arm64 (3.12.1-2) ... Setting up libpython3-stdlib:arm64 (3.12.1-0ubuntu1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.12.1-0ubuntu1) ... Setting up libpython3.12-dev:arm64 (3.12.1-2) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up python3.12-dev (3.12.1-2) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up libpython3-dev:arm64 (3.12.1-0ubuntu1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up debhelper (13.11.9ubuntu1) ... Setting up dh-exec (0.28) ... Setting up python3-dev (3.12.1-0ubuntu1) ... Setting up dh-python (6.20231223) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (255.2-3ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:53:38 UTC 2023 arm64 (aarch64) Toolchain package versions: binutils_2.41.90.20240115-1ubuntu1 dpkg-dev_1.22.2ubuntu2 g++-13_13.2.0-10ubuntu1 gcc-13_13.2.0-10ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-10ubuntu1 libstdc++6_13.2.0-10ubuntu1 linux-libc-dev_6.6.0-14.14 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.10 apt-utils_2.7.10 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13ubuntu6 base-passwd_3.6.3 bash_5.2.21-2ubuntu1 bash-completion_1:2.11-8 binutils_2.41.90.20240115-1ubuntu1 binutils-aarch64-linux-gnu_2.41.90.20240115-1ubuntu1 binutils-common_2.41.90.20240115-1ubuntu1 bsdextrautils_2.39.2-6ubuntu1 bsdutils_1:2.39.2-6ubuntu1 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 coreutils_9.4-2ubuntu2 cpp_4:13.2.0-2ubuntu1 cpp-13_13.2.0-10ubuntu1 dash_0.5.12-6ubuntu1 debconf_1.5.83 debconf-i18n_1.5.83 debhelper_13.11.9ubuntu1 debianutils_5.16 debugedit_1:5.0-5 dh-autoreconf_20 dh-exec_0.28 dh-python_6.20231223 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.2ubuntu2 dpkg-dev_1.22.2ubuntu2 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-2ubuntu1 g++-13_13.2.0-10ubuntu1 gcc_4:13.2.0-2ubuntu1 gcc-13_13.2.0-10ubuntu1 gcc-13-base_13.2.0-10ubuntu1 gettext_0.21-14 gettext-base_0.21-14 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 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libdebhelper-perl_13.11.9ubuntu1 libdevmapper1.02.1_2:1.02.185-2ubuntu1 libdpkg-perl_1.22.2ubuntu2 libdw1_0.190-1 libelf1_0.190-1 libexpat1_2.5.0-2 libexpat1-dev_2.5.0-2 libext2fs2_1.47.0-2ubuntu1 libfakeroot_1.32.2-1 libfdisk1_2.39.2-6ubuntu1 libffi8_3.4.4-2 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-10ubuntu1 libgcc-s1_13.2.0-10ubuntu1 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgmp10_2:6.3.0+dfsg-2ubuntu4 libgnutls30_3.8.1-4ubuntu7 libgomp1_13.2.0-10ubuntu1 libgpg-error-l10n_1.47-3build1 libgpg-error0_1.47-3build1 libgpm2_1.20.7-10build1 libgprofng0_2.41.90.20240115-1ubuntu1 libgssapi-krb5-2_1.20.1-5build1 libhogweed6_3.9.1-2 libhwasan0_13.2.0-10ubuntu1 libicu74_74.2-1ubuntu1 libidn2-0_2.3.4-1build1 libip4tc2_1.8.9-2ubuntu2 libisl23_0.26-3 libitm1_13.2.0-10ubuntu1 libjansson4_2.14-2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_7.2.6-3 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libjson-c5_0.17-1 libk5crypto3_1.20.1-5build1 libkeyutils1_1.6.3-2 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libreadline8_8.2-3 libseccomp2_2.5.4-2ubuntu1 libselinux1_3.5-1build2 libsemanage-common_3.5-1build1 libsemanage2_3.5-1build1 libsepol2_3.5-2 libsframe1_2.41.90.20240115-1ubuntu1 libsmartcols1_2.39.2-6ubuntu1 libsqlite3-0_3.44.2-1 libss2_1.47.0-2ubuntu1 libssl3_3.0.10-1ubuntu3 libstdc++-13-dev_13.2.0-10ubuntu1 libstdc++6_13.2.0-10ubuntu1 libsub-override-perl_0.10-1 libsystemd-shared_255.2-3ubuntu1 libsystemd0_255.2-3ubuntu1 libtasn1-6_4.19.0-3 libtext-charwidth-perl_0.04-11build1 libtext-iconv-perl_1.7-8build1 libtext-wrapi18n-perl_0.06-10 libtinfo6_6.4+20240113-1 libtirpc-common_1.3.4+ds-1build1 libtirpc-dev_1.3.4+ds-1build1 libtirpc3_1.3.4+ds-1build1 libtool_2.4.7-7 libtsan2_13.2.0-10ubuntu1 libubsan1_13.2.0-10ubuntu1 libuchardet0_0.0.8-1 libudev1_255.2-3ubuntu1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.2-6ubuntu1 libxml2_2.9.14+dfsg-1.3build3 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.6.0-14.14 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-3ubuntu1 logsave_1.47.0-2ubuntu1 lto-disabled-list_45 m4_1.4.19-4 make_4.3-4.1build1 man-db_2.12.0-3 mawk_1.3.4.20231126-1 media-types_10.1.0 mount_2.39.2-6ubuntu1 ncurses-base_6.4+20240113-1 ncurses-bin_6.4+20240113-1 netbase_6.4 openssl_3.0.10-1ubuntu3 optipng_0.7.7-3 passwd_1:4.13+dfsg1-3ubuntu1 patch_2.7.6-7build2 perl_5.38.2-3 perl-base_5.38.2-3 perl-modules-5.36_5.36.0-10ubuntu1 perl-modules-5.38_5.38.2-3 pinentry-curses_1.2.1-3ubuntu1 pkgbinarymangler_154 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-2ubuntu1 psmisc_23.6-2 python3_3.12.1-0ubuntu1 python3-dev_3.12.1-0ubuntu1 python3-distutils_3.11.5-1 python3-lib2to3_3.11.5-1 python3-minimal_3.12.1-0ubuntu1 python3-pkg-resources_68.1.2-2 python3-setuptools_68.1.2-2 python3.12_3.12.1-2 python3.12-dev_3.12.1-2 python3.12-minimal_3.12.1-2 readline-common_8.2-3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.20 systemd_255.2-3ubuntu1 systemd-dev_255.2-3ubuntu1 systemd-sysv_255.2-3ubuntu1 sysvinit-utils_3.08-3ubuntu1 tar_1.35+dfsg-3 tzdata_2023d-1ubuntu2 ubuntu-keyring_2023.11.28.1 usrmerge_38ubuntu1 util-linux_2.39.2-6ubuntu1 uuid-runtime_2.39.2-6ubuntu1 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3ubuntu1 zlib1g-dev_1:1.3.dfsg-3ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: kmer Binary: kmer, libkmer-dev, meryl, libmeryl-dev, leaff, sim4db, atac, kmer-examples Architecture: any all Version: 0~20150903+r2013-8build4 Maintainer: Debian Med Packaging Team Uploaders: Afif Elghraoui Homepage: http://kmer.sourceforge.net Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/kmer Vcs-Git: https://salsa.debian.org/med-team/kmer.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), dh-exec, dh-python, python3-dev Package-List: atac deb science optional arch=any kmer deb science optional arch=all kmer-examples deb science optional arch=all leaff deb science optional arch=any libkmer-dev deb libdevel optional arch=any libmeryl-dev deb libdevel optional arch=any meryl deb science optional arch=any sim4db deb science optional arch=any Checksums-Sha1: 6da7324491e761437f27207f0b9135d767452e7a 1251653 kmer_0~20150903+r2013.orig.tar.gz 15858414fd9fd139a755ccf785a71aecf6b9af38 2379840 kmer_0~20150903+r2013-8build4.debian.tar.xz Checksums-Sha256: 8fd9c289244e69e38bb7709f3523d39edf1c2ced2cbcc687fcf00ecfca78ea47 1251653 kmer_0~20150903+r2013.orig.tar.gz 2c6a4fbda639ca84c83fa2f9c55ea567603b7cd19459c8bfaa01aa02ce0e5d17 2379840 kmer_0~20150903+r2013-8build4.debian.tar.xz Files: 30b66a10ddc64022509dd8b85425880f 1251653 kmer_0~20150903+r2013.orig.tar.gz 74a532b34bdfe0e293e22af9cb47d9a1 2379840 kmer_0~20150903+r2013-8build4.debian.tar.xz -----BEGIN PGP SIGNATURE----- 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signature for ./kmer_0~20150903+r2013-8build4.dsc: no acceptable signature found dpkg-source: info: extracting kmer in /<> dpkg-source: info: unpacking kmer_0~20150903+r2013.orig.tar.gz dpkg-source: info: unpacking kmer_0~20150903+r2013-8build4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying allow-freebsd-build.patch dpkg-source: info: applying atac-helper-script-paths.patch dpkg-source: info: applying atac-readme.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying linux-cflags.patch dpkg-source: info: applying fix_wrong_evaluation_order.patch dpkg-source: info: applying 2to3.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27660874 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27660874 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27660874 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package kmer dpkg-buildpackage: info: source version 0~20150903+r2013-8build4 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' /usr/bin/make real-clean make[2]: Entering directory '/<>' rm -f ESTmapper/*.o ESTmapper/mergeCounts ESTmapper/terminate ESTmapper/Make.depends ESTmapper/mergeCounts.C.d ESTmapper/terminate.C.d ESTmapper/mergeCounts ESTmapper/terminate rm -f atac-driver/libatac/*.o atac-driver/libatac/*~ atac-driver/libatac/libatac.a atac-driver/libatac/Make.depends atac-driver/libatac/atacFeature.C.d atac-driver/libatac/atacFeatureList.C.d atac-driver/libatac/atacFile.C.d atac-driver/libatac/atacFileStreamMerge.C.d atac-driver/libatac/atacMatch.C.d atac-driver/libatac/atacMatchList.C.d atac-driver/libatac/atacMatchOrder.C.d rm -f atac-driver/alignOverlap/*.o atac-driver/alignOverlap/*~ atac-driver/alignOverlap/core atac-driver/alignOverlap/overlap-process1.C atac-driver/alignOverlap/overlap-process2.C atac-driver/alignOverlap/overlap atac-driver/alignOverlap/Make.depends atac-driver/alignOverlap/overlap.C.d atac-driver/alignOverlap/overlap-sort.C.d atac-driver/alignOverlap/overlap-printAnno.C.d atac-driver/alignOverlap/overlap-find.C.d rm -f atac-driver/gapShifter/*.o atac-driver/gapShifter/*~ atac-driver/gapShifter/core atac-driver/gapShifter/gapShifter atac-driver/gapShifter/extractSequence atac-driver/gapShifter/extractUnmapped atac-driver/gapShifter/coalesceMatches atac-driver/gapShifter/correctGaps atac-driver/gapShifter/testAtac atac-driver/gapShifter/cleanAtac atac-driver/gapShifter/projectFeatures atac-driver/gapShifter/Make.depends atac-driver/gapShifter/gapShifter.C.d atac-driver/gapShifter/extractSequence.C.d atac-driver/gapShifter/extractUnmapped.C.d atac-driver/gapShifter/coalesceMatches.C.d atac-driver/gapShifter/correctGaps.C.d atac-driver/gapShifter/testAtac.C.d atac-driver/gapShifter/cleanAtac.C.d atac-driver/gapShifter/projectFeatures.C.d rm -f atac-driver/lengthFilter/*.o atac-driver/lengthFilter/*~ atac-driver/lengthFilter/core atac-driver/lengthFilter/lengthFilter atac-driver/lengthFilter/Make.depends atac-driver/lengthFilter/lengthFilter.C.d rm -f atac-driver/matchExtender/*.o atac-driver/matchExtender/*~ atac-driver/matchExtender/core atac-driver/matchExtender/matchExtender atac-driver/matchExtender/Make.depends atac-driver/matchExtender/matchExtender.C.d atac-driver/matchExtender/matchExtender-dump.C.d atac-driver/matchExtender/matchExtender-func.C.d rm -f atac-driver/mismatchCounter/*.o atac-driver/mismatchCounter/*~ atac-driver/mismatchCounter/core atac-driver/mismatchCounter/mismatchCounter atac-driver/mismatchCounter/Make.depends atac-driver/mismatchCounter/mismatchCounter.C.d rm -f atac-driver/statsGenerator/*.o atac-driver/statsGenerator/*~ atac-driver/statsGenerator/core atac-driver/statsGenerator/statsGenerator atac-driver/statsGenerator/Make.depends atac-driver/statsGenerator/statsGenerator.C.d rm -f atac-driver/uniqueFilter/*.o atac-driver/uniqueFilter/*~ atac-driver/uniqueFilter/core atac-driver/uniqueFilter/uniqueFilter atac-driver/uniqueFilter/Make.depends atac-driver/uniqueFilter/uniqueFilter.C.d rm -f atac-driver/clumpMaker/*.o atac-driver/clumpMaker/*~ atac-driver/clumpMaker/core atac-driver/clumpMaker/clumpMaker atac-driver/clumpMaker/Make.depends atac-driver/clumpMaker/clumpMaker.C.d rm -f atac-driver/chainer/*.o atac-driver/chainer/*/*.o atac-driver/chainer/*.so atac-driver/chainer/python/*.pyc atac-driver/chainer/localAlignerInterfacemodule.so atac-driver/chainer/halignmodule.so atac-driver/chainer/Make.depends atac-driver/chainer/localalign/GF_ALN_dpaligner.C.d atac-driver/chainer/localalign/GF_ALN_local.C.d atac-driver/chainer/localalign/GF_ALN_overlap.C.d atac-driver/chainer/localalign/GF_ALN_loverlapper.C.d atac-driver/chainer/localalign/GF_ALN_pieceOlap.C.d atac-driver/chainer/localalign/localAlignerInterfacemodule.C.d atac-driver/chainer/halign/halign.C.d atac-driver/chainer/halign/halignmodule.C.d rm -f atac-driver/chimera/*.o atac-driver/chimera/*~ atac-driver/chimera/core atac-driver/chimera/happy-clones-span-clumps atac-driver/chimera/Make.depends atac-driver/chimera/happy-clones-span-clumps.C.d rm -f atac-driver/Make.depends rm -f seatac/*.o seatac/seatac seatac/heavychains seatac/filter-nop.so seatac/filter-heavychains.so seatac/Make.depends seatac/seatac.C.d seatac/configuration.C.d seatac/encodedQuery.C.d seatac/hitMatrix.C.d seatac/thr-search.C.d seatac/thr-loader.C.d seatac/thr-deadlock.C.d seatac/hitMatrix-sort.C.d rm -f leaff/*.o leaff/leaff leaff/Make.depends leaff/leaff.C.d leaff/blocks.C.d leaff/dups.C.d leaff/gc.C.d leaff/partition.C.d leaff/simseq.C.d leaff/stats.C.d rm -f meryl/*.o meryl/meryl meryl/simple meryl/mapMers meryl/mapMers-depth meryl/kmer-mask meryl/libmerylguts.a meryl/Make.depends meryl/args.C.d meryl/binaryOp.C.d meryl/build.C.d meryl/build-threads.C.d meryl/dump.C.d meryl/estimate.C.d meryl/merge.C.d meryl/unaryOp.C.d meryl/meryl.C.d meryl/simple.C.d meryl/mapMers.C.d meryl/mapMers-depth.C.d meryl/kmer-mask.C.d rm -f seagen/*.o seagen/seagen seagen/hitConverter seagen/filterEST seagen/filterMRNA seagen/filterNULL seagen/filtertest seagen/sortHits seagen/filterESTsimple seagen/Make.depends seagen/searchGENOME.C.d seagen/configuration.C.d seagen/encodedQuery.C.d seagen/thr-deadlock.C.d seagen/thr-loader.C.d seagen/thr-search.C.d seagen/thr-output.C.d seagen/hitMatrix-sort.C.d seagen/aHit.C.d seagen/hitConverter.C.d seagen/filterEST.C.d seagen/filterEST-complicated.C.d seagen/filterMRNA.C.d seagen/filterNULL.C.d seagen/sortHits.C.d seagen/filtertest.C.d seagen/hitReader.C.d seagen/hitMatrix.C.d rm -f sim4dbutils/*.o sim4dbutils/cleanPolishes sim4dbutils/fixPolishesIID sim4dbutils/comparePolishes sim4dbutils/convertToAtac sim4dbutils/convertToExtent sim4dbutils/convertPolishes sim4dbutils/detectChimera sim4dbutils/depthOfPolishes sim4dbutils/filterPolishes sim4dbutils/headPolishes sim4dbutils/mappedCoverage sim4dbutils/mergePolishes sim4dbutils/parseSNP sim4dbutils/pickBestPolish sim4dbutils/pickBestPair sim4dbutils/pickUniquePolish sim4dbutils/plotCoverageVsIdentity sim4dbutils/removeDuplicate sim4dbutils/sortPolishes sim4dbutils/summarizePolishes sim4dbutils/uniqPolishes sim4dbutils/vennPolishes sim4dbutils/realignPolishes sim4dbutils/removeRedundant sim4dbutils/reportAlignmentDifferences sim4dbutils/Make.depends sim4dbutils/cleanPolishes.C.d sim4dbutils/fixPolishesIID.C.d sim4dbutils/comparePolishes.C.d sim4dbutils/convertToAtac.C.d sim4dbutils/convertToExtent.C.d sim4dbutils/convertPolishes.C.d sim4dbutils/detectChimera.C.d sim4dbutils/depthOfPolishes.C.d sim4dbutils/filterPolishes.C.d sim4dbutils/headPolishes.C.d sim4dbutils/mappedCoverage.C.d sim4dbutils/mergePolishes.C.d sim4dbutils/parseSNP.C.d sim4dbutils/pickBestPolish.C.d sim4dbutils/pickBestPair.C.d sim4dbutils/pickUniquePolish.C.d sim4dbutils/plotCoverageVsIdentity.C.d sim4dbutils/removeDuplicate.C.d sim4dbutils/sortPolishes.C.d sim4dbutils/summarizePolishes.C.d sim4dbutils/uniqPolishes.C.d sim4dbutils/vennPolishes.C.d sim4dbutils/realignPolishes.C.d sim4dbutils/removeRedundant.C.d sim4dbutils/reportAlignmentDifferences.C.d sim4dbutils/s4p_overlap.C.d rm -f sim4db/*.o sim4db/sim4db sim4db/Make.depends sim4db/sim4th.C.d rm -f snapper/*.o snapper/snapper2 snapper/Make.depends snapper/snapper2.C.d snapper/configuration.C.d snapper/thr-search.C.d snapper/thr-filter.C.d snapper/thr-polish.C.d snapper/thr-polish-dp.C.d snapper/hitMatrix.C.d snapper/hitMatrix-sort.C.d rm -f tapper/*.o tapper/tagger tapper/tapper tapper/tapperconvert tapper/tappermerge tapper/tappersort tapper/tappererrorcorrect tapper/Make.depends tapper/tagger.C.d tapper/tapper.C.d tapper/tapperconvert.C.d tapper/tappermerge.C.d tapper/tappersort.C.d tapper/tappererrorcorrect.C.d rm -f /<>/libsim4/*.o /<>/libsim4/sim4core/*.o /<>/libsim4/sim4polish/*.o /<>/libsim4/libsim4.a /<>/libsim4/Make.depends /<>/libsim4/sim4core/sim4command.C.d /<>/libsim4/sim4core/sim4parameters.C.d /<>/libsim4/sim4core/sim4string.C.d /<>/libsim4/sim4core/Xtend1.C.d /<>/libsim4/sim4core/align.C.d /<>/libsim4/sim4core/exon_cores.C.d /<>/libsim4/sim4core/extend.C.d /<>/libsim4/sim4core/glimmerSplice.C.d /<>/libsim4/sim4core/greedy.C.d /<>/libsim4/sim4core/mspManager.C.d /<>/libsim4/sim4core/pluri_align.C.d /<>/libsim4/sim4core/poly.C.d /<>/libsim4/sim4core/sim4b1.C.d /<>/libsim4/sim4core/sim4b1a.C.d /<>/libsim4/sim4core/sim4b1-1.C.d /<>/libsim4/sim4core/sim4b1-2.C.d /<>/libsim4/sim4core/sim4b1-3.C.d /<>/libsim4/sim4core/sim4b1-4.C.d /<>/libsim4/sim4core/sim4b1_s.C.d /<>/libsim4/sim4core/sites.C.d /<>/libsim4/sim4core/sites_donor.C.d /<>/libsim4/sim4core/sites_acceptor.C.d /<>/libsim4/sim4core/sites_score.C.d /<>/libsim4/sim4core/splice.C.d /<>/libsim4/sim4core/table.C.d /<>/libsim4/sim4core/util.C.d /<>/libsim4/sim4polish/sim4polish-compare.C.d /<>/libsim4/sim4polish/sim4polish-copy.C.d /<>/libsim4/sim4polish/sim4polish-deleteexon.C.d /<>/libsim4/sim4polish/sim4polish-exons.C.d /<>/libsim4/sim4polish/sim4polish-polishtostring.C.d /<>/libsim4/sim4polish/sim4polish-read.C.d /<>/libsim4/sim4polish/sim4polish-stringtopolish.C.d /<>/libsim4/sim4polish/sim4polish-updatescores.C.d /<>/libsim4/sim4polish/sim4polish.C.d /<>/libsim4/sim4polish/sim4polishList.C.d /<>/libsim4/sim4polish/sim4polishBuilder.C.d /<>/libsim4/sim4polish/sim4polishFile.C.d /<>/libsim4/sim4polish/sim4polishReader.C.d /<>/libsim4/sim4polish/sim4polishWriter.C.d rm -f /<>/libkmer/*.o /<>/libkmer/existDB /<>/libkmer/positionDB /<>/libkmer/libkmer.a /<>/libkmer/Make.depends /<>/libkmer/existDB-create-from-fasta.C.d /<>/libkmer/existDB-create-from-meryl.C.d /<>/libkmer/existDB-create-from-sequence.C.d /<>/libkmer/existDB-state.C.d /<>/libkmer/existDB.C.d /<>/libkmer/positionDB-access.C.d /<>/libkmer/positionDB-dump.C.d /<>/libkmer/positionDB-file.C.d /<>/libkmer/positionDB-mismatch.C.d /<>/libkmer/positionDB-sort.C.d /<>/libkmer/positionDB.C.d /<>/libkmer/driver-existDB.C.d /<>/libkmer/driver-posDB.C.d rm -f /<>/libmeryl/*.o /<>/libmeryl/libmeryl.a /<>/libmeryl/Make.depends /<>/libmeryl/libmeryl.C.d rm -f /<>/libbio/*.o /<>/libbio/libbio.a /<>/libbio/Make.depends /<>/libbio/alphabet.c.d /<>/libbio/alphabet-acgtspace.c.d /<>/libbio/alphabet-colorspace.c.d /<>/libbio/halign.c.d /<>/libbio/reversecomplement.c.d /<>/libbio/kmer.C.d rm -f /<>/libseq/*.o /<>/libseq/test-seqCache /<>/libseq/test-seqStream /<>/libseq/test-merStream /<>/libseq/libseq.a /<>/libseq/Make.depends /<>/libseq/fastaFile.C.d /<>/libseq/fastaStdin.C.d /<>/libseq/fastqFile.C.d /<>/libseq/fastqStdin.C.d /<>/libseq/seqStore.C.d /<>/libseq/sffFile.C.d /<>/libseq/seqFactory.C.d /<>/libseq/seqCache.C.d /<>/libseq/seqStream.C.d /<>/libseq/merStream.C.d /<>/libseq/test-seqCache.C.d /<>/libseq/test-seqStream.C.d /<>/libseq/test-merStream.C.d rm -f /<>/libutil/mt19937ar/*.o /<>/libutil/mt19937ar/test.c /<>/libutil/mt19937ar/diffs /<>/libutil/mt19937ar/mt19937ar-test /<>/libutil/mt19937ar/libmt19937ar.a /<>/libutil/mt19937ar/Make.depends /<>/libutil/mt19937ar/mt19937ar.c.d /<>/libutil/mt19937ar/test.c.d /<>/libutil/mt19937ar/*.o /<>/libutil/mt19937ar/test.c /<>/libutil/mt19937ar/diffs /<>/libutil/mt19937ar/mt19937ar-test rm -f /<>/libutil/kazlib/*.o /<>/libutil/kazlib/libkaz.a /<>/libutil/kazlib/Make.depends /<>/libutil/kazlib/dict.c.d /<>/libutil/kazlib/except.c.d /<>/libutil/kazlib/hash.c.d /<>/libutil/kazlib/list.c.d /<>/libutil/kazlib/sfx.c.d rm -f /<>/libutil/*.o /<>/libutil/libutil.a /<>/libutil/Make.depends /<>/libutil/file.c.d /<>/libutil/md5.c.d /<>/libutil/palloc.c.d /<>/libutil/qsort_mt.c.d /<>/libutil/util.c.d /<>/libutil/bigQueue.C.d /<>/libutil/bitPackedArray.C.d /<>/libutil/bitPackedFile.C.d /<>/libutil/fibonacciNumbers.C.d /<>/libutil/readBuffer.C.d /<>/libutil/recordFile.C.d /<>/libutil/speedCounter.C.d /<>/libutil/sweatShop.C.d rm -f Make.depends Make.compilers make[2]: Leaving directory '/<>' rm -rf installdir make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch --with python3 dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' /usr/bin/make install \ CLDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now" \ CXXLDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' making /<>/libutil/kazlib/sfx.c.d making /<>/libutil/kazlib/list.c.d making /<>/libutil/kazlib/hash.c.d making /<>/libutil/kazlib/except.c.d making /<>/libutil/kazlib/dict.c.d gcc -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/mt19937ar/mt19937ar.o -c /<>/libutil/mt19937ar/mt19937ar.c /<>/libutil/mt19937ar/mt19937ar.c: In function ‘mtRandomGaussian’: /<>/libutil/mt19937ar/mt19937ar.c:166:34: warning: variable ‘y2’ set but not used [-Wunused-but-set-variable] 166 | double x1=0, x2=0, w=0, y1=0, y2=0; | ^~ gcc -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/mt19937ar/mt19937ar-test.o -c /<>/libutil/mt19937ar/mt19937ar-test.c gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o /<>/libutil/mt19937ar/mt19937ar-test /<>/libutil/mt19937ar/mt19937ar.o /<>/libutil/mt19937ar/mt19937ar-test.o -pthread -ldl -lm /<>/libutil/mt19937ar/mt19937ar-test | diff - /<>/libutil/mt19937ar/mt19937ar.out > /<>/libutil/mt19937ar/diffs 2>&1 if test -s /<>/libutil/mt19937ar/diffs ; then echo 'MT19937: TEST FAILED'; else echo 'MT19937: Test Passed'; fi MT19937: Test Passed touch /<>/libutil/mt19937ar/test.c /<>/libutil/mt19937ar/mt19937ar-test | diff - /<>/libutil/mt19937ar/mt19937ar.out making /<>/libutil/mt19937ar/test.c.d making /<>/libutil/mt19937ar/mt19937ar.c.d making /<>/libutil/sweatShop.C.d making /<>/libutil/speedCounter.C.d making /<>/libutil/recordFile.C.d making /<>/libutil/readBuffer.C.d making /<>/libutil/fibonacciNumbers.C.d making /<>/libutil/bitPackedFile.C.d making /<>/libutil/bitPackedArray.C.d making /<>/libutil/bigQueue.C.d making /<>/libutil/util.c.d making /<>/libutil/qsort_mt.c.d making /<>/libutil/palloc.c.d making /<>/libutil/md5.c.d making /<>/libutil/file.c.d making /<>/libseq/test-merStream.C.d making /<>/libseq/test-seqStream.C.d making /<>/libseq/test-seqCache.C.d making /<>/libseq/merStream.C.d making /<>/libseq/seqStream.C.d making /<>/libseq/seqCache.C.d making /<>/libseq/seqFactory.C.d making /<>/libseq/sffFile.C.d making /<>/libseq/seqStore.C.d making /<>/libseq/fastqStdin.C.d making /<>/libseq/fastqFile.C.d making /<>/libseq/fastaStdin.C.d making /<>/libseq/fastaFile.C.d making /<>/libbio/kmer.C.d making /<>/libbio/reversecomplement.c.d making /<>/libbio/halign.c.d making /<>/libbio/alphabet-colorspace.c.d making /<>/libbio/alphabet-acgtspace.c.d making /<>/libbio/alphabet.c.d making /<>/libmeryl/libmeryl.C.d making /<>/libkmer/driver-posDB.C.d making /<>/libkmer/driver-existDB.C.d making /<>/libkmer/positionDB.C.d making /<>/libkmer/positionDB-sort.C.d making /<>/libkmer/positionDB-mismatch.C.d making /<>/libkmer/positionDB-file.C.d making /<>/libkmer/positionDB-dump.C.d making /<>/libkmer/positionDB-access.C.d making /<>/libkmer/existDB.C.d making /<>/libkmer/existDB-state.C.d making /<>/libkmer/existDB-create-from-sequence.C.d making /<>/libkmer/existDB-create-from-meryl.C.d making /<>/libkmer/existDB-create-from-fasta.C.d making /<>/libsim4/sim4polish/sim4polishWriter.C.d making /<>/libsim4/sim4polish/sim4polishReader.C.d making /<>/libsim4/sim4polish/sim4polishFile.C.d making /<>/libsim4/sim4polish/sim4polishBuilder.C.d making /<>/libsim4/sim4polish/sim4polishList.C.d making /<>/libsim4/sim4polish/sim4polish.C.d making /<>/libsim4/sim4polish/sim4polish-updatescores.C.d making /<>/libsim4/sim4polish/sim4polish-stringtopolish.C.d making /<>/libsim4/sim4polish/sim4polish-read.C.d making /<>/libsim4/sim4polish/sim4polish-polishtostring.C.d making /<>/libsim4/sim4polish/sim4polish-exons.C.d making /<>/libsim4/sim4polish/sim4polish-deleteexon.C.d making /<>/libsim4/sim4polish/sim4polish-copy.C.d making /<>/libsim4/sim4polish/sim4polish-compare.C.d making /<>/libsim4/sim4core/util.C.d making /<>/libsim4/sim4core/table.C.d making /<>/libsim4/sim4core/splice.C.d making /<>/libsim4/sim4core/sites_score.C.d making /<>/libsim4/sim4core/sites_acceptor.C.d making /<>/libsim4/sim4core/sites_donor.C.d making /<>/libsim4/sim4core/sites.C.d making /<>/libsim4/sim4core/sim4b1_s.C.d making /<>/libsim4/sim4core/sim4b1-4.C.d making /<>/libsim4/sim4core/sim4b1-3.C.d making /<>/libsim4/sim4core/sim4b1-2.C.d making /<>/libsim4/sim4core/sim4b1-1.C.d making /<>/libsim4/sim4core/sim4b1a.C.d making /<>/libsim4/sim4core/sim4b1.C.d making /<>/libsim4/sim4core/poly.C.d making /<>/libsim4/sim4core/pluri_align.C.d making /<>/libsim4/sim4core/mspManager.C.d making /<>/libsim4/sim4core/greedy.C.d making /<>/libsim4/sim4core/glimmerSplice.C.d making /<>/libsim4/sim4core/extend.C.d making /<>/libsim4/sim4core/exon_cores.C.d making /<>/libsim4/sim4core/align.C.d making /<>/libsim4/sim4core/Xtend1.C.d making /<>/libsim4/sim4core/sim4string.C.d making /<>/libsim4/sim4core/sim4parameters.C.d making /<>/libsim4/sim4core/sim4command.C.d making tapper/tappererrorcorrect.C.d making tapper/tappersort.C.d making tapper/tappermerge.C.d making tapper/tapperconvert.C.d making tapper/tapper.C.d making tapper/tagger.C.d making snapper/hitMatrix-sort.C.d making snapper/hitMatrix.C.d making snapper/thr-polish-dp.C.d making snapper/thr-polish.C.d making snapper/thr-filter.C.d making snapper/thr-search.C.d making snapper/configuration.C.d making snapper/snapper2.C.d making sim4db/sim4th.C.d making sim4dbutils/s4p_overlap.C.d making sim4dbutils/reportAlignmentDifferences.C.d making sim4dbutils/removeRedundant.C.d making sim4dbutils/realignPolishes.C.d making sim4dbutils/vennPolishes.C.d making sim4dbutils/uniqPolishes.C.d making sim4dbutils/summarizePolishes.C.d making sim4dbutils/sortPolishes.C.d making sim4dbutils/removeDuplicate.C.d making sim4dbutils/plotCoverageVsIdentity.C.d making sim4dbutils/pickUniquePolish.C.d making sim4dbutils/pickBestPair.C.d making sim4dbutils/pickBestPolish.C.d making sim4dbutils/parseSNP.C.d making sim4dbutils/mergePolishes.C.d making sim4dbutils/mappedCoverage.C.d making sim4dbutils/headPolishes.C.d making sim4dbutils/filterPolishes.C.d making sim4dbutils/depthOfPolishes.C.d making sim4dbutils/detectChimera.C.d making sim4dbutils/convertPolishes.C.d making sim4dbutils/convertToExtent.C.d making sim4dbutils/convertToAtac.C.d making sim4dbutils/comparePolishes.C.d making sim4dbutils/fixPolishesIID.C.d making sim4dbutils/cleanPolishes.C.d making seagen/hitMatrix.C.d making seagen/hitReader.C.d making seagen/filtertest.C.d making seagen/sortHits.C.d making seagen/filterNULL.C.d making seagen/filterMRNA.C.d making seagen/filterEST-complicated.C.d making seagen/filterEST.C.d making seagen/hitConverter.C.d making seagen/aHit.C.d making seagen/hitMatrix-sort.C.d making seagen/thr-output.C.d making seagen/thr-search.C.d making seagen/thr-loader.C.d making seagen/thr-deadlock.C.d making seagen/encodedQuery.C.d making seagen/configuration.C.d making seagen/searchGENOME.C.d making meryl/kmer-mask.C.d making meryl/mapMers-depth.C.d making meryl/mapMers.C.d making meryl/simple.C.d making meryl/meryl.C.d making meryl/unaryOp.C.d making meryl/merge.C.d making meryl/estimate.C.d making meryl/dump.C.d making meryl/build-threads.C.d making meryl/build.C.d making meryl/binaryOp.C.d making meryl/args.C.d making leaff/stats.C.d making leaff/simseq.C.d making leaff/partition.C.d making leaff/gc.C.d making leaff/dups.C.d making leaff/blocks.C.d making leaff/leaff.C.d making seatac/hitMatrix-sort.C.d making seatac/thr-deadlock.C.d making seatac/thr-loader.C.d making seatac/thr-search.C.d making seatac/hitMatrix.C.d making seatac/encodedQuery.C.d making seatac/configuration.C.d making seatac/seatac.C.d making atac-driver/chimera/happy-clones-span-clumps.C.d making atac-driver/chainer/halign/halignmodule.C.d making atac-driver/chainer/halign/halign.C.d making atac-driver/chainer/localalign/localAlignerInterfacemodule.C.d making atac-driver/chainer/localalign/GF_ALN_pieceOlap.C.d making atac-driver/chainer/localalign/GF_ALN_loverlapper.C.d making atac-driver/chainer/localalign/GF_ALN_overlap.C.d making atac-driver/chainer/localalign/GF_ALN_local.C.d making atac-driver/chainer/localalign/GF_ALN_dpaligner.C.d making atac-driver/clumpMaker/clumpMaker.C.d making atac-driver/uniqueFilter/uniqueFilter.C.d making atac-driver/statsGenerator/statsGenerator.C.d making atac-driver/mismatchCounter/mismatchCounter.C.d making atac-driver/matchExtender/matchExtender-func.C.d making atac-driver/matchExtender/matchExtender-dump.C.d making atac-driver/matchExtender/matchExtender.C.d making atac-driver/lengthFilter/lengthFilter.C.d making atac-driver/gapShifter/projectFeatures.C.d making atac-driver/gapShifter/cleanAtac.C.d making atac-driver/gapShifter/testAtac.C.d making atac-driver/gapShifter/correctGaps.C.d making atac-driver/gapShifter/coalesceMatches.C.d making atac-driver/gapShifter/extractUnmapped.C.d making atac-driver/gapShifter/extractSequence.C.d making atac-driver/gapShifter/gapShifter.C.d making atac-driver/alignOverlap/overlap-find.C.d making atac-driver/alignOverlap/overlap-printAnno.C.d making atac-driver/alignOverlap/overlap-sort.C.d making atac-driver/alignOverlap/overlap.C.d making atac-driver/libatac/atacMatchOrder.C.d making atac-driver/libatac/atacMatchList.C.d making atac-driver/libatac/atacMatch.C.d making atac-driver/libatac/atacFileStreamMerge.C.d making atac-driver/libatac/atacFile.C.d making atac-driver/libatac/atacFeatureList.C.d making atac-driver/libatac/atacFeature.C.d making ESTmapper/terminate.C.d making ESTmapper/mergeCounts.C.d g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ESTmapper/mergeCounts.o -c ESTmapper/mergeCounts.C ESTmapper/mergeCounts.C: In function ‘int main(int, char**)’: ESTmapper/mergeCounts.C:33:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 33 | fgets(buf, 256, Fs[i]); | ~~~~~^~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o ESTmapper/mergeCounts ESTmapper/mergeCounts.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ESTmapper/terminate.o -c ESTmapper/terminate.C In file included from /<>/libutil/util++.H:4, from ESTmapper/terminate.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ ESTmapper/terminate.C: In member function ‘void iidReaderWriter::load(uint32)’: ESTmapper/terminate.C:82:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 82 | fscanf(inFile, uint32FMT, &iid); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ESTmapper/terminate.C:85:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 85 | fscanf(inFile, uint32FMT, &iid); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4command.o -c /<>/libsim4/sim4core/sim4command.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libsim4/sim4core/sim4command.H:4, from /<>/libsim4/sim4core/sim4command.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4core/sim4command.C: In member function ‘void sim4command::finalize()’: /<>/libsim4/sim4core/sim4command.C:147:6: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 147 | if (_genLo > _genHi) | ^ /<>/libsim4/sim4core/sim4command.C: In member function ‘char* sim4command::getESTheader()’: /<>/libsim4/sim4core/sim4command.C:184:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 184 | static char *xxx = "anonymous cDNA sequence"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4core/sim4command.C: In member function ‘char* sim4command::getGENheader()’: /<>/libsim4/sim4core/sim4command.C:222:15: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 222 | char *xxx = "anonymous genomic sequence"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4parameters.o -c /<>/libsim4/sim4core/sim4parameters.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/mspManager.H:8, from /<>/libsim4/sim4core/sim4parameters.H:4, from /<>/libsim4/sim4core/sim4parameters.C:2: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4string.o -c /<>/libsim4/sim4core/sim4string.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sim4string.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4core/sim4string.C: In member function ‘void Sim4::IDISPLAY(sim4polishBuilder&, char*, char*, char*, char*, int, int, int*, int, int, int, Exon*)’: /<>/libsim4/sim4core/sim4string.C:677:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 677 | register int i, j, op; | ^ /<>/libsim4/sim4core/sim4string.C:677:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 677 | register int i, j, op; | ^ /<>/libsim4/sim4core/sim4string.C:677:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 677 | register int i, j, op; | ^~ /<>/libsim4/sim4core/sim4string.C:681:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 681 | builder.addExonAlignment("Empty exon list; no alignment possible!", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4core/sim4string.C:682:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 682 | "Empty exon list; no alignment possible!"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4core/sim4string.C:694:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 694 | builder.addExonAlignment("Alignment fragment not found; no alignment possible!", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4core/sim4string.C:695:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 695 | "Alignment fragment not found; no alignment possible!"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/Xtend1.o -c /<>/libsim4/sim4core/Xtend1.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/Xtend1.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/align.o -c /<>/libsim4/sim4core/align.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/align.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4core/align.C: In member function ‘Sim4::path(int, int, char, int, int, char, int, Sim4::edit_script**, Sim4::edit_script**)’: /<>/libsim4/sim4core/align.C:777:13: warning: ‘head2’ may be used uninitialized [-Wmaybe-uninitialized] 777 | if (head2) *tail = tail2; | ^~~~~ /<>/libsim4/sim4core/align.C:557:38: note: ‘head2’ declared here 557 | edit_script *head1, *tail1, *head2, *tail2; | ^~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/exon_cores.o -c /<>/libsim4/sim4core/exon_cores.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/exon_cores.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/extend.o -c /<>/libsim4/sim4core/extend.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/extend.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/glimmerSplice.o -c /<>/libsim4/sim4core/glimmerSplice.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/glimmerSplice.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4core/glimmerSplice.C: In function ‘void readModel(Fixed_Length_ICM_t*, const char*)’: /<>/libsim4/sim4core/glimmerSplice.C:53:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 53 | fread (line, sizeof (char), ID_STRING_LEN, fp); // skip the text header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4core/glimmerSplice.C:84:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 84 | fread ((*fixed).permutation, sizeof (int), (*fixed).length, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/greedy.o -c /<>/libsim4/sim4core/greedy.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/greedy.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/mspManager.o -c /<>/libsim4/sim4core/mspManager.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/mspManager.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/pluri_align.o -c /<>/libsim4/sim4core/pluri_align.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/pluri_align.C:2: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/poly.o -c /<>/libsim4/sim4core/poly.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/poly.C:2: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4core/poly.C: In member function ‘void Sim4::get_polyAT(char*, int, int*, int*, int)’: /<>/libsim4/sim4core/poly.C:9:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 9 | register int i, sum10, sum20; | ^ /<>/libsim4/sim4core/poly.C:9:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 9 | register int i, sum10, sum20; | ^~~~~ /<>/libsim4/sim4core/poly.C:9:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 9 | register int i, sum10, sum20; | ^~~~~ /<>/libsim4/sim4core/poly.C:10:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 10 | register char *s, *t, *v; | ^ /<>/libsim4/sim4core/poly.C:10:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 10 | register char *s, *t, *v; | ^ /<>/libsim4/sim4core/poly.C:10:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 10 | register char *s, *t, *v; | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4b1.o -c /<>/libsim4/sim4core/sim4b1.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sim4b1.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4b1a.o -c /<>/libsim4/sim4core/sim4b1a.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sim4b1a.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4b1-1.o -c /<>/libsim4/sim4core/sim4b1-1.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sim4b1-1.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4b1-2.o -c /<>/libsim4/sim4core/sim4b1-2.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sim4b1-2.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4b1-3.o -c /<>/libsim4/sim4core/sim4b1-3.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sim4b1-3.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4b1-4.o -c /<>/libsim4/sim4core/sim4b1-4.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sim4b1-4.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4b1_s.o -c /<>/libsim4/sim4core/sim4b1_s.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sim4b1_s.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sites.o -c /<>/libsim4/sim4core/sites.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sites.C:4: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4core/sites.C: In function ‘int readtree(Sim4*, char*, tree*, int)’: /<>/libsim4/sim4core/sites.C:452:6: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] 452 | int len; | ^~~ /<>/libsim4/sim4core/sites.C: In function ‘Is_Cod_NonCod(int const*, double*, int)’: /<>/libsim4/sim4core/sites.C:751:12: warning: ‘scores’ may be used uninitialized [-Wmaybe-uninitialized] 751 | double *scores; | ^~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sites_donor.o -c /<>/libsim4/sim4core/sites_donor.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sites_donor.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sites_acceptor.o -c /<>/libsim4/sim4core/sites_acceptor.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sites_acceptor.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sites_score.o -c /<>/libsim4/sim4core/sites_score.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sites_score.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/splice.o -c /<>/libsim4/sim4core/splice.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/splice.C:2: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/table.o -c /<>/libsim4/sim4core/table.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/table.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4core/table.C: In member function ‘void Sim4::bld_table(char*, int, mss_t, int)’: /<>/libsim4/sim4core/table.C:112:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 112 | if (emer < 0) | ^~ /<>/libsim4/sim4core/table.C:115:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 115 | ecode <<= 2; | ^~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/util.o -c /<>/libsim4/sim4core/util.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/util.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4core/util.C: In member function ‘void Sim4::complement_exons(Exon**, int, int)’: /<>/libsim4/sim4core/util.C:23:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 23 | register int aux; | ^~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polish-compare.o -c /<>/libsim4/sim4polish/sim4polish-compare.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polish-compare.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4polish/sim4polish-compare.C:249:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 249 | fprintf(stderr, "s4p_compareExons()-- Can't allocate "uint32FMT" + "uint32FMT" words for counting exons.\n%s\n", A->_numExons, B->_numExons, strerror(errno)); | ^ /<>/libsim4/sim4polish/sim4polish-compare.C:249:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 249 | fprintf(stderr, "s4p_compareExons()-- Can't allocate "uint32FMT" + "uint32FMT" words for counting exons.\n%s\n", A->_numExons, B->_numExons, strerror(errno)); | ^ /<>/libsim4/sim4polish/sim4polish-compare.C:365:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 365 | fprintf(stderr, "s4p_compareExons()-- Can't allocate "uint32FMT" + "uint32FMT" words for counting exons.\n%s\n", A->_numExons, B->_numExons, strerror(errno)); | ^ /<>/libsim4/sim4polish/sim4polish-compare.C:365:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 365 | fprintf(stderr, "s4p_compareExons()-- Can't allocate "uint32FMT" + "uint32FMT" words for counting exons.\n%s\n", A->_numExons, B->_numExons, strerror(errno)); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polish-copy.o -c /<>/libsim4/sim4polish/sim4polish-copy.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polish-copy.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polish-deleteexon.o -c /<>/libsim4/sim4polish/sim4polish-deleteexon.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polish-deleteexon.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polish-exons.o -c /<>/libsim4/sim4polish/sim4polish-exons.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polish-exons.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polish-polishtostring.o -c /<>/libsim4/sim4polish/sim4polish-polishtostring.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polish-polishtostring.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:58:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | sprintf(gpp, "%c"uint32FMT" ", gaptyp, gapcnt); | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:68:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | sprintf(gpp, "%c"uint32FMT" ", gaptyp, gapcnt); | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:80:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 80 | sprintf(gpp, "%c"uint32FMT" ", gaptyp, gapcnt); | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:91:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 91 | sprintf(gpp, "%c"uint32FMT"", gaptyp, gapcnt); | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 163 | fprintf(stderr, "sim4reader: Unknown matchOrientation '"uint32FMT"' in printPolish()\n", _matchOrientation); | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:176:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 176 | fprintf(stderr, "sim4reader: Unknown strandOrientation '"uint32FMT"' in printPolish()\n", _matchOrientation); | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:88: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:100: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:212:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:212:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:212:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:212:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:212:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:212:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:212:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:323:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 323 | fprintf(stderr, "sim4reader: Unknown strandOrientation '"uint32FMT"' in printPolishGFF3()\n", _matchOrientation); | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:346:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 346 | sprintf(outc, uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:346:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 346 | sprintf(outc, uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:346:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 346 | sprintf(outc, uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:350:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 350 | sprintf(outc, "ID=sim4db"uint32FMT";Name="uint32FMT":%s;Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:350:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 350 | sprintf(outc, "ID=sim4db"uint32FMT";Name="uint32FMT":%s;Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:350:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 350 | sprintf(outc, "ID=sim4db"uint32FMT";Name="uint32FMT":%s;Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:350:76: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 350 | sprintf(outc, "ID=sim4db"uint32FMT";Name="uint32FMT":%s;Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:350:91: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 350 | sprintf(outc, "ID=sim4db"uint32FMT";Name="uint32FMT":%s;Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:354:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 354 | sprintf(outc, "targetLen="uint32FMT";pA="uint32FMT";pT="uint32FMT";genRegion="uint32FMT"-"uint32FMT"\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:354:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 354 | sprintf(outc, "targetLen="uint32FMT";pA="uint32FMT";pT="uint32FMT";genRegion="uint32FMT"-"uint32FMT"\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:354:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 354 | sprintf(outc, "targetLen="uint32FMT";pA="uint32FMT";pT="uint32FMT";genRegion="uint32FMT"-"uint32FMT"\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:354:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 354 | sprintf(outc, "targetLen="uint32FMT";pA="uint32FMT";pT="uint32FMT";genRegion="uint32FMT"-"uint32FMT"\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:354:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 354 | sprintf(outc, "targetLen="uint32FMT";pA="uint32FMT";pT="uint32FMT";genRegion="uint32FMT"-"uint32FMT"\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:363:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 363 | sprintf(outc, uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:363:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 363 | sprintf(outc, uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:363:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 363 | sprintf(outc, uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:368:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 368 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;Gap=%s;nMatches="uint32FMT"", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:368:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 368 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;Gap=%s;nMatches="uint32FMT"", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:368:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 368 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;Gap=%s;nMatches="uint32FMT"", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:368:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 368 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;Gap=%s;nMatches="uint32FMT"", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:368:91: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 368 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;Gap=%s;nMatches="uint32FMT"", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:371:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 371 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;nMatches="uint32FMT"", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:371:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 371 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;nMatches="uint32FMT"", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:371:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 371 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;nMatches="uint32FMT"", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:371:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 371 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;nMatches="uint32FMT"", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:371:91: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 371 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;nMatches="uint32FMT"", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polish-read.o -c /<>/libsim4/sim4polish/sim4polish-read.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polish-read.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4polish/sim4polish-read.C:46:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 46 | fprintf(stderr, "sim4reader: Got '%s', expecting 'sim4begin' at byte "uint64FMT"\n", | ^ /<>/libsim4/sim4polish/sim4polish-read.C:65:2: warning: #warning LAZY PROGRAMMER did not extend an array [-Wcpp] 65 | #warning LAZY PROGRAMMER did not extend an array | ^~~~~~~ /<>/libsim4/sim4polish/sim4polish-read.C:126:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 126 | fprintf(stderr, "sim4reader: Got '%s', expecting GFF3 mRNA line at byte "uint64FMT"\n", | ^ /<>/libsim4/sim4polish/sim4polish-read.C:150:2: warning: #warning LAZY PROGRAMMER did not extend an array [-Wcpp] 150 | #warning LAZY PROGRAMMER did not extend an array | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polish-stringtopolish.o -c /<>/libsim4/sim4polish/sim4polish-stringtopolish.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:104: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:55:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | fprintf(stderr, "sim4polish::s4p_linesToPolishS4DB()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:72:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 72 | fprintf(stderr, "sim4polish::s4p_linesToPolishS4DB()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "sim4polish::s4p_linesToPolishS4DB()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:127:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:127:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:127:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:127:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:127:76: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:127:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:127:102: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:169:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 169 | fprintf(stderr, "sim4polish::s4p_linesToPolishS4DB()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:243:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 243 | r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:243:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 243 | r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:243:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 243 | r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:243:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 243 | r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:246:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 246 | fprintf(stderr, "sim4polish::s4p_linesToPolishGFF3()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:275:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 275 | r = sscanf(crttok, "ID=sim4db"uint32FMT"", &matchID); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:280:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 280 | r = sscanf(crttok, "Name="uint32FMT":%s", &_estID, _estDefLine); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:285:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 285 | r = sscanf(crttok, "Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c", &_estID, _estDefLine, &dummy1, &dummy2, &mOri); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:285:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 285 | r = sscanf(crttok, "Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c", &_estID, _estDefLine, &dummy1, &dummy2, &mOri); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:285:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 285 | r = sscanf(crttok, "Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c", &_estID, _estDefLine, &dummy1, &dummy2, &mOri); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:293:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 293 | r = sscanf(crttok, "targetLen="uint32FMT"", &_estLen); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:296:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 296 | r = sscanf(crttok, "pA="uint32FMT"", &_estPolyA); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:299:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 299 | r = sscanf(crttok, "pT="uint32FMT"", &_estPolyT); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:302:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 302 | r = sscanf(crttok, "genRegion="uint32FMT"-"uint32FMT"", &_genRegionOffset, &dummy1); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:302:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 302 | r = sscanf(crttok, "genRegion="uint32FMT"-"uint32FMT"", &_genRegionOffset, &dummy1); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:313:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 313 | fprintf(stderr, "sim4polish::s4p_linesToPolishGFF3()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:339:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 339 | r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:339:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 339 | r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:339:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 339 | r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:339:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 339 | r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:342:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 342 | fprintf(stderr, "sim4polish::s4p_linesToPolishGFF3()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:366:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 366 | r = sscanf(crttok, "Parent=sim4db"uint32FMT"", &dummy1); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:370:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 370 | r = sscanf(crttok, "Target=%s "uint32FMT" "uint32FMT" %c", &dummybuf, &exon._estFrom, &exon._estTo, &mOri); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:370:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 370 | r = sscanf(crttok, "Target=%s "uint32FMT" "uint32FMT" %c", &dummybuf, &exon._estFrom, &exon._estTo, &mOri); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:377:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 377 | r = sscanf(crttok, "nMatches="uint32FMT"", &exon._numMatches); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:403:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 403 | fprintf(stderr, "sim4polish::s4p_linesToPolishGFF3()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:437:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 437 | fprintf(stderr, "sim4polish::s4p_linesToPolishGFF3()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C: In member function ‘void sim4polish::s4p_linesToPolishS4DB(uint32, uint32, char**, uint32*)’: /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:140:13: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘class sim4polishExon’; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 140 | memcpy(nnn, _exons, sizeof(sim4polishExon) * _numExons); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polish.H:49:7: note: ‘class sim4polishExon’ declared here 49 | class sim4polishExon { | ^~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C: In member function ‘void sim4polish::s4p_linesToPolishGFF3(uint32, uint32, char**, uint32*)’: /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:261:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 261 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:261:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 261 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:262:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 262 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:262:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 262 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:263:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 263 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:263:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 263 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:264:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 264 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:264:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 264 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:265:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 265 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:265:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 265 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:266:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 266 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:266:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 266 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:267:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 267 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:267:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 267 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:268:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 268 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:268:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 268 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:346:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 346 | if ((dummy1 != _genID) || strcmp(dummybuf, _genDefLine) || | ~~~~~~~^~~~~~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:347:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 347 | (sOri != '+') && (sOri != '-') && (sOri != '.')) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:352:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 352 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:352:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 352 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:353:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 353 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:353:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 353 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:354:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 354 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:354:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 354 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:355:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 355 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:355:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 355 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:356:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 356 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:356:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 356 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:357:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 357 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:357:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 357 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:358:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 358 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:358:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 358 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:359:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 359 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:359:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 359 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:370:30: warning: format ‘%s’ expects argument of type ‘char*’, but argument 3 has type ‘char (*)[1000]’ [-Wformat=] 370 | r = sscanf(crttok, "Target=%s "uint32FMT" "uint32FMT" %c", &dummybuf, &exon._estFrom, &exon._estTo, &mOri); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~ | | | char (*)[1000] /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:383:39: warning: format ‘%s’ expects argument of type ‘char*’, but argument 3 has type ‘char (*)[1000]’ [-Wformat=] 383 | r = sscanf(crttok, "intron=%s", &dummybuf); | ~^ ~~~~~~~~~ | | | | | char (*)[1000] | char* /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:414:13: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘class sim4polishExon’; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 414 | memcpy(nnn, _exons, sizeof(sim4polishExon) * _numExons); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polish.H:49:7: note: ‘class sim4polishExon’ declared here 49 | class sim4polishExon { | ^~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polish-updatescores.o -c /<>/libsim4/sim4polish/sim4polish-updatescores.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polish-updatescores.C:2: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polish.o -c /<>/libsim4/sim4polish/sim4polish.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polish.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polishList.o -c /<>/libsim4/sim4polish/sim4polishList.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libsim4/sim4polish/sim4polishList.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polishBuilder.o -c /<>/libsim4/sim4polish/sim4polishBuilder.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libsim4/sim4polish/sim4polishBuilder.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4polish/sim4polishBuilder.C: In member function ‘sim4polish* sim4polishBuilder::release()’: /<>/libsim4/sim4polish/sim4polishBuilder.C:246:11: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘class sim4polishExon’; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 246 | memcpy(it->_exons + i, ex[i], sizeof(sim4polishExon)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/libsim4/sim4polish/sim4polishBuilder.H:4, from /<>/libsim4/sim4polish/sim4polishBuilder.C:7: /<>/libsim4/sim4polish/sim4polish.H:49:7: note: ‘class sim4polishExon’ declared here 49 | class sim4polishExon { | ^~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polishFile.o -c /<>/libsim4/sim4polish/sim4polishFile.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polishFile.H:4, from /<>/libsim4/sim4polish/sim4polishFile.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4polish/sim4polishFile.C:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Failed to reposition %s to record "uint32FMT", only "uint32FMT" records\n", _path, ordinal, _polishRecordLen), exit(1); | ^ /<>/libsim4/sim4polish/sim4polishFile.C:120:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Failed to reposition %s to record "uint32FMT", only "uint32FMT" records\n", _path, ordinal, _polishRecordLen), exit(1); | ^ /<>/libsim4/sim4polish/sim4polishFile.C:248:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 248 | fprintf(stderr, "polishes: "uint32FMT"\r", _polishRecordLen); | ^ /<>/libsim4/sim4polish/sim4polishFile.C: In member function ‘void sim4polishFile::loadIndex()’: /<>/libsim4/sim4polish/sim4polishFile.C:141:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 141 | fread(&magic, sizeof(char), 8, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polishFile.C:145:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 145 | fread(&_polishRecordLen, sizeof(uint32), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polishFile.C:151:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 151 | fread( _polishRecord, sizeof(polishRecord), _polishRecordLen, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polishFile.C:152:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 152 | fread( _polishRecordEST, sizeof(uint32), _polishRecordLen, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polishFile.C:153:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 153 | fread( _polishRecordGEN, sizeof(uint32), _polishRecordLen, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polishFile.C:155:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | fread(&_maxEST, sizeof(uint32), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polishFile.C:156:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 156 | fread(&_maxGEN, sizeof(uint32), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polishFile.C:161:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 161 | fread( _ESTiidLocation, sizeof(uint32), _maxEST, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polishFile.C:162:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 162 | fread( _GENiidLocation, sizeof(uint32), _maxGEN, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polishReader.o -c /<>/libsim4/sim4polish/sim4polishReader.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polishReader.H:4, from /<>/libsim4/sim4polish/sim4polishReader.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polishWriter.o -c /<>/libsim4/sim4polish/sim4polishWriter.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polishWriter.H:4, from /<>/libsim4/sim4polish/sim4polishWriter.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ rm -f /<>/libsim4/libsim4.a && ar ruvs /<>/libsim4/libsim4.a /<>/libsim4/sim4core/sim4command.o /<>/libsim4/sim4core/sim4parameters.o /<>/libsim4/sim4core/sim4string.o /<>/libsim4/sim4core/Xtend1.o /<>/libsim4/sim4core/align.o /<>/libsim4/sim4core/exon_cores.o /<>/libsim4/sim4core/extend.o /<>/libsim4/sim4core/glimmerSplice.o /<>/libsim4/sim4core/greedy.o /<>/libsim4/sim4core/mspManager.o /<>/libsim4/sim4core/pluri_align.o /<>/libsim4/sim4core/poly.o /<>/libsim4/sim4core/sim4b1.o /<>/libsim4/sim4core/sim4b1a.o /<>/libsim4/sim4core/sim4b1-1.o /<>/libsim4/sim4core/sim4b1-2.o /<>/libsim4/sim4core/sim4b1-3.o /<>/libsim4/sim4core/sim4b1-4.o /<>/libsim4/sim4core/sim4b1_s.o /<>/libsim4/sim4core/sites.o /<>/libsim4/sim4core/sites_donor.o /<>/libsim4/sim4core/sites_acceptor.o /<>/libsim4/sim4core/sites_score.o /<>/libsim4/sim4core/splice.o /<>/libsim4/sim4core/table.o /<>/libsim4/sim4core/util.o /<>/libsim4/sim4polish/sim4polish-compare.o /<>/libsim4/sim4polish/sim4polish-copy.o /<>/libsim4/sim4polish/sim4polish-deleteexon.o /<>/libsim4/sim4polish/sim4polish-exons.o /<>/libsim4/sim4polish/sim4polish-polishtostring.o /<>/libsim4/sim4polish/sim4polish-read.o /<>/libsim4/sim4polish/sim4polish-stringtopolish.o /<>/libsim4/sim4polish/sim4polish-updatescores.o /<>/libsim4/sim4polish/sim4polish.o /<>/libsim4/sim4polish/sim4polishList.o /<>/libsim4/sim4polish/sim4polishBuilder.o /<>/libsim4/sim4polish/sim4polishFile.o /<>/libsim4/sim4polish/sim4polishReader.o /<>/libsim4/sim4polish/sim4polishWriter.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/libsim4/libsim4.a a - /<>/libsim4/sim4core/sim4command.o a - /<>/libsim4/sim4core/sim4parameters.o a - /<>/libsim4/sim4core/sim4string.o a - /<>/libsim4/sim4core/Xtend1.o a - /<>/libsim4/sim4core/align.o a - /<>/libsim4/sim4core/exon_cores.o a - /<>/libsim4/sim4core/extend.o a - /<>/libsim4/sim4core/glimmerSplice.o a - /<>/libsim4/sim4core/greedy.o a - /<>/libsim4/sim4core/mspManager.o a - /<>/libsim4/sim4core/pluri_align.o a - /<>/libsim4/sim4core/poly.o a - /<>/libsim4/sim4core/sim4b1.o a - /<>/libsim4/sim4core/sim4b1a.o a - /<>/libsim4/sim4core/sim4b1-1.o a - /<>/libsim4/sim4core/sim4b1-2.o a - /<>/libsim4/sim4core/sim4b1-3.o a - /<>/libsim4/sim4core/sim4b1-4.o a - /<>/libsim4/sim4core/sim4b1_s.o a - /<>/libsim4/sim4core/sites.o a - /<>/libsim4/sim4core/sites_donor.o a - /<>/libsim4/sim4core/sites_acceptor.o a - /<>/libsim4/sim4core/sites_score.o a - /<>/libsim4/sim4core/splice.o a - /<>/libsim4/sim4core/table.o a - /<>/libsim4/sim4core/util.o a - /<>/libsim4/sim4polish/sim4polish-compare.o a - /<>/libsim4/sim4polish/sim4polish-copy.o a - /<>/libsim4/sim4polish/sim4polish-deleteexon.o a - /<>/libsim4/sim4polish/sim4polish-exons.o a - /<>/libsim4/sim4polish/sim4polish-polishtostring.o a - /<>/libsim4/sim4polish/sim4polish-read.o a - /<>/libsim4/sim4polish/sim4polish-stringtopolish.o a - /<>/libsim4/sim4polish/sim4polish-updatescores.o a - /<>/libsim4/sim4polish/sim4polish.o a - /<>/libsim4/sim4polish/sim4polishList.o a - /<>/libsim4/sim4polish/sim4polishBuilder.o a - /<>/libsim4/sim4polish/sim4polishFile.o a - /<>/libsim4/sim4polish/sim4polishReader.o a - /<>/libsim4/sim4polish/sim4polishWriter.o g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/fastaFile.o -c /<>/libseq/fastaFile.C In file included from /<>/libutil/util++.H:4, from /<>/libseq/fastaFile.H:4, from /<>/libseq/fastaFile.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libseq/fastaFile.C:151:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 151 | fprintf(stderr, "fastaFile::getSequence(full)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/fastaFile.C:151:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 151 | fprintf(stderr, "fastaFile::getSequence(full)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/fastaFile.C:252:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 252 | fprintf(stderr, "fastaFile::getSequence(part)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/fastaFile.C:252:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 252 | fprintf(stderr, "fastaFile::getSequence(part)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/fastaFile.C: In member function ‘void fastaFile::loadIndex(char*)’: /<>/libseq/fastaFile.C:357:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 357 | fread(&_header, sizeof(fastaFileHeader), 1, I); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/fastaFile.C:379:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 379 | fread(_index, sizeof(fastaFileIndex), _header._numberOfSequences, I); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/fastaFile.C:380:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 380 | fread(_names, sizeof(char), _header._namesLength, I); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/fastaStdin.o -c /<>/libseq/fastaStdin.C In file included from /<>/libutil/util++.H:4, from /<>/libseq/fastaStdin.H:4, from /<>/libseq/fastaStdin.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libseq/fastaStdin.C: In member function ‘virtual bool fastaStdin::getSequence(uint32, char*&, uint32&, uint32&, char*&, uint32&, uint32&)’: /<>/libseq/fastaStdin.C:110:9: warning: unused variable ‘ret’ [-Wunused-variable] 110 | bool ret = true; | ^~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/fastqFile.o -c /<>/libseq/fastqFile.C In file included from /<>/libutil/util++.H:4, from /<>/libseq/fastqFile.H:4, from /<>/libseq/fastqFile.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libseq/fastqFile.C:141:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 141 | fprintf(stderr, "fastqFile::getSequence(full)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/fastqFile.C:141:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 141 | fprintf(stderr, "fastqFile::getSequence(full)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/fastqFile.C:253:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 253 | fprintf(stderr, "fastqFile::getSequence(part)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/fastqFile.C:253:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 253 | fprintf(stderr, "fastqFile::getSequence(part)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/fastqFile.C:533:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 533 | fprintf(stderr, "REALLOC len="uint32FMT" from "uint32FMT" to "uint32FMT"\n", indexLen, indexMax, indexMax * 2); | ^ /<>/libseq/fastqFile.C:533:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 533 | fprintf(stderr, "REALLOC len="uint32FMT" from "uint32FMT" to "uint32FMT"\n", indexLen, indexMax, indexMax * 2); | ^ /<>/libseq/fastqFile.C:533:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 533 | fprintf(stderr, "REALLOC len="uint32FMT" from "uint32FMT" to "uint32FMT"\n", indexLen, indexMax, indexMax * 2); | ^ /<>/libseq/fastqFile.C: In member function ‘void fastqFile::loadIndex(char*)’: /<>/libseq/fastqFile.C:354:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 354 | fread(&_header, sizeof(fastqFileHeader), 1, I); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/fastqFile.C:374:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 374 | fread(_index, sizeof(fastqFileIndex), _header._numberOfSequences, I); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/fastqFile.C:375:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 375 | fread(_names, sizeof(char), _header._namesLength, I); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/fastqStdin.o -c /<>/libseq/fastqStdin.C In file included from /<>/libutil/util++.H:4, from /<>/libseq/fastqStdin.H:4, from /<>/libseq/fastqStdin.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libseq/fastqStdin.C: In member function ‘virtual bool fastqStdin::getSequence(uint32, char*&, uint32&, uint32&, char*&, uint32&, uint32&)’: /<>/libseq/fastqStdin.C:110:9: warning: unused variable ‘ret’ [-Wunused-variable] 110 | bool ret = true; | ^~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/seqStore.o -c /<>/libseq/seqStore.C In file included from /<>/libutil/util++.H:4, from /<>/libseq/seqStore.H:4, from /<>/libseq/seqStore.C:2: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libseq/seqStore.C:129:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "seqStore::getSequence(full)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/seqStore.C:129:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "seqStore::getSequence(full)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/seqStore.C:197:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 197 | fprintf(stderr, "seqStore::getSequence(part)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/seqStore.C:197:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 197 | fprintf(stderr, "seqStore::getSequence(part)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/seqStore.C:203:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 203 | fprintf(stderr, "seqStore::getSequence(part)-- for iid "uint32FMT"; invalid bgn="uint32FMT" end="uint32FMT"; seqLen="uint32FMT"\n", | ^ /<>/libseq/seqStore.C:203:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 203 | fprintf(stderr, "seqStore::getSequence(part)-- for iid "uint32FMT"; invalid bgn="uint32FMT" end="uint32FMT"; seqLen="uint32FMT"\n", | ^ /<>/libseq/seqStore.C:203:96: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 203 | fprintf(stderr, "seqStore::getSequence(part)-- for iid "uint32FMT"; invalid bgn="uint32FMT" end="uint32FMT"; seqLen="uint32FMT"\n", | ^ /<>/libseq/seqStore.C:203:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 203 | fprintf(stderr, "seqStore::getSequence(part)-- for iid "uint32FMT"; invalid bgn="uint32FMT" end="uint32FMT"; seqLen="uint32FMT"\n", | ^ /<>/libseq/seqStore.C:463:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 463 | fprintf(stderr, "constructSeqStore()-- sequence %s too long, must be shorter than "uint64FMT" Gbp.\n", | ^ /<>/libseq/seqStore.C:467:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 467 | fprintf(stderr, "constructSeqStore()-- too many sequences, must be fewer than "uint64FMT".\n", | ^ /<>/libseq/seqStore.C:620:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 620 | fprintf(stderr, "constructSeqStore()-- seqStore '%s' constructed ("uint32FMT" sequences, "uint64FMT" ACGT letters, "uint32FMT" ACGT blocks, "uint32FMT" GAP blocks).\n", | ^ /<>/libseq/seqStore.C:620:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 620 | fprintf(stderr, "constructSeqStore()-- seqStore '%s' constructed ("uint32FMT" sequences, "uint64FMT" ACGT letters, "uint32FMT" ACGT blocks, "uint32FMT" GAP blocks).\n", | ^ /<>/libseq/seqStore.C:620:102: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 620 | fprintf(stderr, "constructSeqStore()-- seqStore '%s' constructed ("uint32FMT" sequences, "uint64FMT" ACGT letters, "uint32FMT" ACGT blocks, "uint32FMT" GAP blocks).\n", | ^ /<>/libseq/seqStore.C:620:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 620 | fprintf(stderr, "constructSeqStore()-- seqStore '%s' constructed ("uint32FMT" sequences, "uint64FMT" ACGT letters, "uint32FMT" ACGT blocks, "uint32FMT" GAP blocks).\n", | ^ /<>/libseq/seqStore.C: In function ‘void constructSeqStore(char*, seqCache*)’: /<>/libseq/seqStore.C:410:9: warning: ‘memset’ used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args] 410 | memset(&HEAD, sizeof(seqStoreHeader), 0); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/seqStore.C: In constructor ‘seqStore::seqStore(const char*)’: /<>/libseq/seqStore.C:21:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 21 | fread(&_header, sizeof(seqStoreHeader), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/seqStore.C: In member function ‘virtual seqFile* seqStore::openFile(const char*)’: /<>/libseq/seqStore.C:73:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 73 | fread(&magic1, sizeof(uint64), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/seqStore.C:74:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 74 | fread(&magic2, sizeof(uint64), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/seqStore.C: In member function ‘void seqStore::loadIndex()’: /<>/libseq/seqStore.C:318:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 318 | fread(&_header, sizeof(seqStoreHeader), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/seqStore.C:329:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 329 | fread( _index, sizeof(seqStoreIndex), _header._numberOfSequences, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/seqStore.C:343:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 343 | fread( _block, sizeof(seqStoreBlock), _header._numberOfBlocks, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/seqStore.C:347:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 347 | fread( _names, sizeof(char), _header._namesLength, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/sffFile.o -c /<>/libseq/sffFile.C In file included from /<>/libutil/util++.H:4, from /<>/libseq/sffFile.H:4, from /<>/libseq/sffFile.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/seqFactory.o -c /<>/libseq/seqFactory.C In file included from /<>/libseq/seqFactory.H:4, from /<>/libseq/seqFactory.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libseq/fastaFile.H:4, from /<>/libseq/seqFactory.C:3: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/seqCache.o -c /<>/libseq/seqCache.C In file included from /<>/libutil/util++.H:4, from /<>/libseq/seqCache.H:4, from /<>/libseq/seqCache.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libseq/seqCache.C:171:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stderr, "seqCache::loadAllSequences()-- Failed to load iid "uint32FMT".\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/seqStream.o -c /<>/libseq/seqStream.C In file included from /<>/libseq/seqFactory.H:4, from /<>/libseq/seqStream.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libseq/seqStream.H:4, from /<>/libseq/seqStream.C:2: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libseq/seqStream.C:236:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 236 | fprintf(stderr, "seqStream::setRange()-- ERROR: range ("uint64FMT","uint64FMT") too big; only "uint64FMT" positions.\n", | ^ /<>/libseq/seqStream.C:236:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 236 | fprintf(stderr, "seqStream::setRange()-- ERROR: range ("uint64FMT","uint64FMT") too big; only "uint64FMT" positions.\n", | ^ /<>/libseq/seqStream.C:236:82: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 236 | fprintf(stderr, "seqStream::setRange()-- ERROR: range ("uint64FMT","uint64FMT") too big; only "uint64FMT" positions.\n", | ^ /<>/libseq/seqStream.C:268:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 268 | fprintf(stderr, "seqStream::sequenceNumberOfPosition()-- WARNING: position p="uint64FMT" too big; only "uint64FMT" positions.\n", | ^ /<>/libseq/seqStream.C:268:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 268 | fprintf(stderr, "seqStream::sequenceNumberOfPosition()-- WARNING: position p="uint64FMT" too big; only "uint64FMT" positions.\n", | ^ /<>/libseq/seqStream.C:340:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 340 | fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #1 iid="uint32FMT" bgn="uint32FMT" end="uint32FMT"\n", | ^ /<>/libseq/seqStream.C:340:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 340 | fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #1 iid="uint32FMT" bgn="uint32FMT" end="uint32FMT"\n", | ^ /<>/libseq/seqStream.C:340:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 340 | fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #1 iid="uint32FMT" bgn="uint32FMT" end="uint32FMT"\n", | ^ /<>/libseq/seqStream.C:386:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 386 | fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #2 iid="uint32FMT" bgn="uint32FMT" end="uint32FMT"\n", | ^ /<>/libseq/seqStream.C:386:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 386 | fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #2 iid="uint32FMT" bgn="uint32FMT" end="uint32FMT"\n", | ^ /<>/libseq/seqStream.C:386:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 386 | fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #2 iid="uint32FMT" bgn="uint32FMT" end="uint32FMT"\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/merStream.o -c /<>/libseq/merStream.C In file included from /<>/libutil/util++.H:4, from /<>/libseq/merStream.H:4, from /<>/libseq/merStream.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/test-seqCache.o -c /<>/libseq/test-seqCache.C In file included from /<>/libseq/test-seqCache.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libseq/seqCache.H:4, from /<>/libseq/test-seqCache.C:3: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/libseq/test-seqCache.C:7: /<>/libseq/test-correctSequence.H:33:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 33 | fprintf(stderr, "generateCorrectSequence()-- Using seed "uint32FMT"\n", seed); | ^ /<>/libseq/test-correctSequence.H:34:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); | ^ /<>/libseq/test-correctSequence.H:34:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); | ^ /<>/libseq/test-correctSequence.H:34:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); | ^ /<>/libseq/test-seqCache.C:15:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 15 | fprintf(stderr, "testID:"uint32FMT" - empty sequence\n", testID); | ^ /<>/libseq/test-seqCache.C:22:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 22 | fprintf(stderr, "testID:"uint32FMT" - header differs '%s' vs '%s'\n", testID, S->header(), correctSequence[sid].header); | ^ /<>/libseq/test-seqCache.C:26:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 26 | fprintf(stderr, "testID:"uint32FMT" - header length differs "uint32FMT" vs "uint32FMT"\n", testID, S->headerLength(), correctSequence[sid].headerLength); | ^ /<>/libseq/test-seqCache.C:26:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 26 | fprintf(stderr, "testID:"uint32FMT" - header length differs "uint32FMT" vs "uint32FMT"\n", testID, S->headerLength(), correctSequence[sid].headerLength); | ^ /<>/libseq/test-seqCache.C:26:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 26 | fprintf(stderr, "testID:"uint32FMT" - header length differs "uint32FMT" vs "uint32FMT"\n", testID, S->headerLength(), correctSequence[sid].headerLength); | ^ /<>/libseq/test-seqCache.C:30:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 30 | fprintf(stderr, "testID:"uint32FMT" - sequence differs\n", testID); | ^ /<>/libseq/test-seqCache.C:34:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "testID:"uint32FMT" - sequence length differs strlen "uint32FMT" vs "uint32FMT"\n", testID, (uint32)strlen(S->sequence()), correctSequence[sid].sequenceLength); | ^ /<>/libseq/test-seqCache.C:34:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "testID:"uint32FMT" - sequence length differs strlen "uint32FMT" vs "uint32FMT"\n", testID, (uint32)strlen(S->sequence()), correctSequence[sid].sequenceLength); | ^ /<>/libseq/test-seqCache.C:34:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "testID:"uint32FMT" - sequence length differs strlen "uint32FMT" vs "uint32FMT"\n", testID, (uint32)strlen(S->sequence()), correctSequence[sid].sequenceLength); | ^ /<>/libseq/test-seqCache.C:38:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 38 | fprintf(stderr, "testID:"uint32FMT" - sequence length differs "uint32FMT" vs "uint32FMT"\n", testID, S->sequenceLength(), correctSequence[sid].sequenceLength); | ^ /<>/libseq/test-seqCache.C:38:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 38 | fprintf(stderr, "testID:"uint32FMT" - sequence length differs "uint32FMT" vs "uint32FMT"\n", testID, S->sequenceLength(), correctSequence[sid].sequenceLength); | ^ /<>/libseq/test-seqCache.C:38:77: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 38 | fprintf(stderr, "testID:"uint32FMT" - sequence length differs "uint32FMT" vs "uint32FMT"\n", testID, S->sequenceLength(), correctSequence[sid].sequenceLength); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/test-seqStream.o -c /<>/libseq/test-seqStream.C In file included from /<>/libseq/test-seqStream.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libseq/seqCache.H:4, from /<>/libseq/test-seqStream.C:3: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/libseq/test-seqStream.C:7: /<>/libseq/test-correctSequence.H:33:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 33 | fprintf(stderr, "generateCorrectSequence()-- Using seed "uint32FMT"\n", seed); | ^ /<>/libseq/test-correctSequence.H:34:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); | ^ /<>/libseq/test-correctSequence.H:34:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); | ^ /<>/libseq/test-correctSequence.H:34:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); | ^ /<>/libseq/test-seqStream.C:17:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | fprintf(stderr, "testIndexing()-- numSeq="uint32FMT" sep=%c sepLen="uint32FMT"\n", numSeq, sep, sepLen); | ^ /<>/libseq/test-seqStream.C:17:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | fprintf(stderr, "testIndexing()-- numSeq="uint32FMT" sep=%c sepLen="uint32FMT"\n", numSeq, sep, sepLen); | ^ /<>/libseq/test-seqStream.C:55:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | fprintf(stderr, "lengthOf "uint32FMT" returned "uint32FMT", not correct "uint32FMT"\n", | ^ /<>/libseq/test-seqStream.C:55:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | fprintf(stderr, "lengthOf "uint32FMT" returned "uint32FMT", not correct "uint32FMT"\n", | ^ /<>/libseq/test-seqStream.C:55:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | fprintf(stderr, "lengthOf "uint32FMT" returned "uint32FMT", not correct "uint32FMT"\n", | ^ /<>/libseq/test-seqStream.C:60:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 60 | fprintf(stderr, "startOf "uint32FMT" returned "uint64FMT", not correct "uint64FMT"\n", | ^ /<>/libseq/test-seqStream.C:60:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 60 | fprintf(stderr, "startOf "uint32FMT" returned "uint64FMT", not correct "uint64FMT"\n", | ^ /<>/libseq/test-seqStream.C:60:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 60 | fprintf(stderr, "startOf "uint32FMT" returned "uint64FMT", not correct "uint64FMT"\n", | ^ /<>/libseq/test-seqStream.C:65:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | fprintf(stderr, "IIDOf "uint32FMT" returned "uint32FMT", not correct "uint32FMT"\n", | ^ /<>/libseq/test-seqStream.C:65:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | fprintf(stderr, "IIDOf "uint32FMT" returned "uint32FMT", not correct "uint32FMT"\n", | ^ /<>/libseq/test-seqStream.C:65:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | fprintf(stderr, "IIDOf "uint32FMT" returned "uint32FMT", not correct "uint32FMT"\n", | ^ /<>/libseq/test-seqStream.C:74:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 74 | fprintf(stderr, "sequenceNumberOfPosition "uint64FMT" returned "uint32FMT", not correct "uint32FMT".\n", | ^ /<>/libseq/test-seqStream.C:74:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 74 | fprintf(stderr, "sequenceNumberOfPosition "uint64FMT" returned "uint32FMT", not correct "uint32FMT".\n", | ^ /<>/libseq/test-seqStream.C:74:82: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 74 | fprintf(stderr, "sequenceNumberOfPosition "uint64FMT" returned "uint32FMT", not correct "uint32FMT".\n", | ^ /<>/libseq/test-seqStream.C:95:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 95 | fprintf(stderr, "wrong separator at sep "uint32FMT" got %d expected %d\n", x, s, sep); | ^ /<>/libseq/test-seqStream.C:124:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 124 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- letter wrong got'%c'\n", sp, si, st, ch, chainSeq[sib]); | ^ /<>/libseq/test-seqStream.C:124:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 124 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- letter wrong got'%c'\n", sp, si, st, ch, chainSeq[sib]); | ^ /<>/libseq/test-seqStream.C:124:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 124 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- letter wrong got'%c'\n", sp, si, st, ch, chainSeq[sib]); | ^ /<>/libseq/test-seqStream.C:128:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqPos wrong got "uint32FMT"\n", sp, si, st, ch, chainSeqPos[sib]); | ^ /<>/libseq/test-seqStream.C:128:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqPos wrong got "uint32FMT"\n", sp, si, st, ch, chainSeqPos[sib]); | ^ /<>/libseq/test-seqStream.C:128:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqPos wrong got "uint32FMT"\n", sp, si, st, ch, chainSeqPos[sib]); | ^ /<>/libseq/test-seqStream.C:128:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqPos wrong got "uint32FMT"\n", sp, si, st, ch, chainSeqPos[sib]); | ^ /<>/libseq/test-seqStream.C:132:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqIID wrong got"uint32FMT"\n", sp, si, st, ch, chainSeqIID[sib]); | ^ /<>/libseq/test-seqStream.C:132:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqIID wrong got"uint32FMT"\n", sp, si, st, ch, chainSeqIID[sib]); | ^ /<>/libseq/test-seqStream.C:132:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqIID wrong got"uint32FMT"\n", sp, si, st, ch, chainSeqIID[sib]); | ^ /<>/libseq/test-seqStream.C:132:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqIID wrong got"uint32FMT"\n", sp, si, st, ch, chainSeqIID[sib]); | ^ /<>/libseq/test-seqStream.C:136:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- strPos wrong got "uint64FMT"\n", sp, si, st, ch, chainStrPos[sib]); | ^ /<>/libseq/test-seqStream.C:136:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- strPos wrong got "uint64FMT"\n", sp, si, st, ch, chainStrPos[sib]); | ^ /<>/libseq/test-seqStream.C:136:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- strPos wrong got "uint64FMT"\n", sp, si, st, ch, chainStrPos[sib]); | ^ /<>/libseq/test-seqStream.C:136:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- strPos wrong got "uint64FMT"\n", sp, si, st, ch, chainStrPos[sib]); | ^ /<>/libseq/test-seqStream.C:145:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 145 | fprintf(stderr, "iterated length wrong; sib="uint32FMT" sie="uint32FMT"\n", sib, sie); | ^ /<>/libseq/test-seqStream.C:145:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 145 | fprintf(stderr, "iterated length wrong; sib="uint32FMT" sie="uint32FMT"\n", sib, sie); | ^ /<>/libseq/test-seqStream.C:159:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 159 | fprintf(stderr, "testChaining()-- numSeq="uint32FMT" sep=%c sepLen="uint32FMT"\n", numSeq, sep, sepLen); | ^ /<>/libseq/test-seqStream.C:159:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 159 | fprintf(stderr, "testChaining()-- numSeq="uint32FMT" sep=%c sepLen="uint32FMT"\n", numSeq, sep, sepLen); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/test-merStream.o -c /<>/libseq/test-merStream.C In file included from /<>/libseq/test-merStream.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libseq/seqCache.H:4, from /<>/libseq/test-merStream.C:3: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/libseq/test-merStream.C:7: /<>/libseq/test-correctSequence.H:33:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 33 | fprintf(stderr, "generateCorrectSequence()-- Using seed "uint32FMT"\n", seed); | ^ /<>/libseq/test-correctSequence.H:34:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); | ^ /<>/libseq/test-correctSequence.H:34:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); | ^ /<>/libseq/test-correctSequence.H:34:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); | ^ /<>/libseq/test-merStream.C:11:2: warning: #warning HOW DO WE TEST IF WE GET ALL THE MERS? [-Wcpp] 11 | #warning HOW DO WE TEST IF WE GET ALL THE MERS? | ^~~~~~~ /<>/libseq/test-merStream.C:33:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 33 | fprintf(stdout, "MS pos="uint32FMT" posInSeq="uint64FMT" posInStr="uint64FMT" seqNum="uint64FMT"\n", | ^ /<>/libseq/test-merStream.C:33:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 33 | fprintf(stdout, "MS pos="uint32FMT" posInSeq="uint64FMT" posInStr="uint64FMT" seqNum="uint64FMT"\n", | ^ /<>/libseq/test-merStream.C:33:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 33 | fprintf(stdout, "MS pos="uint32FMT" posInSeq="uint64FMT" posInStr="uint64FMT" seqNum="uint64FMT"\n", | ^ /<>/libseq/test-merStream.C:33:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 33 | fprintf(stdout, "MS pos="uint32FMT" posInSeq="uint64FMT" posInStr="uint64FMT" seqNum="uint64FMT"\n", | ^ /<>/libseq/test-merStream.C:39:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 39 | fprintf(stdout, "MS pos="uint32FMT" failed '%s' != '%s'.\n", pos, testmer, seq + pos); | ^ /<>/libseq/test-merStream.C:124:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 124 | fprintf(stderr, "mer stream position out of range; at "uint32FMT", range "uint32FMT"-"uint32FMT"\n", | ^ /<>/libseq/test-merStream.C:124:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 124 | fprintf(stderr, "mer stream position out of range; at "uint32FMT", range "uint32FMT"-"uint32FMT"\n", | ^ /<>/libseq/test-merStream.C:124:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 124 | fprintf(stderr, "mer stream position out of range; at "uint32FMT", range "uint32FMT"-"uint32FMT"\n", | ^ /<>/libseq/test-merStream.C: In function ‘int main(int, char**)’: /<>/libseq/test-merStream.C:223:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 223 | testMerStreamSimple(MS, 20, "GGGTCAACTCCGCCCGCACTCTAGC", SP); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/test-merStream.C:225:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 225 | testMerStreamSimple(MS, 20, "GGGTCAACTCCGCCCGCACTCTAGC", SP); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/test-merStream.C:228:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 228 | testMerStreamSimple(MS, 20, "GGGTCAACTCCGCCCGCACTCTAGC", SP); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/test-merStream.C:243:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 243 | testMerStreamSimple(MS, 20, "GATCACTCGCGCACTCTAGCA", SP); | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/test-merStream.C:245:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 245 | testMerStreamSimple(MS, 20, "GATCACTCGCGCACTCTAGCA", SP); | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/test-merStream.C:248:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 248 | testMerStreamSimple(MS, 20, "GATCACTCGCGCACTCTAGCA", SP); | ^~~~~~~~~~~~~~~~~~~~~~~ rm -f /<>/libseq/libseq.a && ar ruvs /<>/libseq/libseq.a /<>/libseq/fastaFile.o /<>/libseq/fastaStdin.o /<>/libseq/fastqFile.o /<>/libseq/fastqStdin.o /<>/libseq/seqStore.o /<>/libseq/sffFile.o /<>/libseq/seqFactory.o /<>/libseq/seqCache.o /<>/libseq/seqStream.o /<>/libseq/merStream.o /<>/libseq/test-seqCache.o /<>/libseq/test-seqStream.o /<>/libseq/test-merStream.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/libseq/libseq.a a - /<>/libseq/fastaFile.o a - /<>/libseq/fastaStdin.o a - /<>/libseq/fastqFile.o a - /<>/libseq/fastqStdin.o a - /<>/libseq/seqStore.o a - /<>/libseq/sffFile.o a - /<>/libseq/seqFactory.o a - /<>/libseq/seqCache.o a - /<>/libseq/seqStream.o a - /<>/libseq/merStream.o a - /<>/libseq/test-seqCache.o a - /<>/libseq/test-seqStream.o a - /<>/libseq/test-merStream.o gcc -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libbio/alphabet.o -c /<>/libbio/alphabet.c gcc -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libbio/alphabet-acgtspace.o -c /<>/libbio/alphabet-acgtspace.c gcc -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libbio/alphabet-colorspace.o -c /<>/libbio/alphabet-colorspace.c gcc -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libbio/halign.o -c /<>/libbio/halign.c /<>/libbio/halign.c: In function ‘align_path’: /<>/libbio/halign.c:385:7: warning: ‘head2’ may be used uninitialized [-Wmaybe-uninitialized] 385 | if (head2) *tail = tail2; | ^~~~~ /<>/libbio/halign.c:163:32: note: ‘head2’ declared here 163 | edit_script *head1, *tail1, *head2, *tail2; | ^~~~~ gcc -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libbio/reversecomplement.o -c /<>/libbio/reversecomplement.c g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libbio/kmer.o -c /<>/libbio/kmer.C In file included from /<>/libbio/kmer.H:28, from /<>/libbio/kmer.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/kmer.H:29: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ rm -f /<>/libbio/libbio.a && ar ruvs /<>/libbio/libbio.a /<>/libbio/alphabet.o /<>/libbio/alphabet-acgtspace.o /<>/libbio/alphabet-colorspace.o /<>/libbio/halign.o /<>/libbio/reversecomplement.o /<>/libbio/kmer.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/libbio/libbio.a a - /<>/libbio/alphabet.o a - /<>/libbio/alphabet-acgtspace.o a - /<>/libbio/alphabet-colorspace.o a - /<>/libbio/halign.o a - /<>/libbio/reversecomplement.o a - /<>/libbio/kmer.o gcc -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/file.o -c /<>/libutil/file.c /<>/libutil/file.c: In function ‘openFile’: /<>/libutil/file.c:382:9: warning: variable ‘isRW’ set but not used [-Wunused-but-set-variable] 382 | int isRW = 1; | ^~~~ gcc -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/md5.o -c /<>/libutil/md5.c gcc -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/palloc.o -c /<>/libutil/palloc.c gcc -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/qsort_mt.o -c /<>/libutil/qsort_mt.c /<>/libutil/qsort_mt.c: In function ‘qsort_algo’: /<>/libutil/qsort_mt.c:264:13: warning: variable ‘id’ set but not used [-Wunused-but-set-variable] 264 | pthread_t id; | ^~ /<>/libutil/qsort_mt.c: In function ‘qsort_thread’: /<>/libutil/qsort_mt.c:370:13: warning: variable ‘id’ set but not used [-Wunused-but-set-variable] 370 | pthread_t id; | ^~ gcc -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/util.o -c /<>/libutil/util.c g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/bigQueue.o -c /<>/libutil/bigQueue.C In file included from /<>/libutil/util++.H:4, from /<>/libutil/bigQueue.H:4, from /<>/libutil/bigQueue.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libutil/bigQueue.C: In member function ‘void bigQueue::mergeTemporaryFiles()’: /<>/libutil/bigQueue.C:204:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 204 | fread(thing, _objectSize, 1, _temporaryFiles[i]); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/bigQueue.C:255:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 255 | fread(thing, _objectSize, 1, _temporaryFiles[fileid]); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/bigQueue.C: In member function ‘bool bigQueue::next()’: /<>/libutil/bigQueue.C:302:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 302 | fread(_thingBuffer, _objectSize, 1, _temporaryFiles[0]); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/bitPackedArray.o -c /<>/libutil/bitPackedArray.C In file included from /<>/libutil/util++.H:4, from /<>/libutil/bitPackedArray.C:8: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libutil/bitPackedArray.C:35:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 35 | fprintf(stderr, "bitPackedArray::get()-- element index "uint64FMT" is out of range, only "uint64FMT" elements.\n", | ^ /<>/libutil/bitPackedArray.C:35:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 35 | fprintf(stderr, "bitPackedArray::get()-- element index "uint64FMT" is out of range, only "uint64FMT" elements.\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/bitPackedFile.o -c /<>/libutil/bitPackedFile.C In file included from /<>/libutil/util++.H:4, from /<>/libutil/bitPackedFile.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libutil/bitPackedFile.C:168:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 168 | fprintf(stderr, " at position "uint64HEX"\n", file_offset); | ^ /<>/libutil/bitPackedFile.C:367:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 367 | fprintf(stderr, "bitPackedFile::seekNormal() '%s' seek to pos="uint64FMT" failed: %s\n", | ^ /<>/libutil/bitPackedFile.C:376:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 376 | fprintf(stderr, "bitPackedFile::seekNormal() '%s' read of "uint64FMT" bytes failed': %s\n", | ^ /<>/libutil/bitPackedFile.C: In constructor ‘bitPackedFile::bitPackedFile(const char*, uint64, bool)’: /<>/libutil/bitPackedFile.C:109:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 109 | write(_file, t, sizeof(char) * 16); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/bitPackedFile.C:110:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 110 | write(_file, &at, sizeof(uint64)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/bitPackedFile.C:111:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 111 | write(_file, &bt, sizeof(uint64)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/bitPackedFile.C: In member function ‘void bitPackedFile::flushDirty()’: /<>/libutil/bitPackedFile.C:232:8: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 232 | write(_file, _bfr, sizeof(uint64) * _bfrmax); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/fibonacciNumbers.o -c /<>/libutil/fibonacciNumbers.C In file included from /<>/libutil/fibonacciNumbers.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/readBuffer.o -c /<>/libutil/readBuffer.C In file included from /<>/libutil/util++.H:4, from /<>/libutil/readBuffer.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libutil/readBuffer.C:132:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "readBuffer::fillBuffer()-- only read "uint64FMT" bytes, couldn't read "uint64FMT" bytes from '%s': %s\n", | ^ /<>/libutil/readBuffer.C:132:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "readBuffer::fillBuffer()-- only read "uint64FMT" bytes, couldn't read "uint64FMT" bytes from '%s': %s\n", | ^ /<>/libutil/readBuffer.C:165:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 165 | fprintf(stderr, "readBuffer()-- '%s' couldn't seek to position "int64FMT": %s\n", | ^ /<>/libutil/readBuffer.C:228:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 228 | fprintf(stderr, "readBuffer()-- couldn't read "uint64FMT" bytes from '%s': n%s\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/recordFile.o -c /<>/libutil/recordFile.C In file included from /<>/libutil/util++.H:4, from /<>/libutil/recordFile.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libutil/recordFile.C:227:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 227 | fprintf(stderr, "recordFile::seek() '%s' seek to record="uint64FMT" at fileposition="uint64FMT" failed: %s\n", | ^ /<>/libutil/recordFile.C:227:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 227 | fprintf(stderr, "recordFile::seek() '%s' seek to record="uint64FMT" at fileposition="uint64FMT" failed: %s\n", | ^ /<>/libutil/recordFile.C:233:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 233 | fprintf(stderr, "recordFile::seek() '%s' read of "uint64FMT" bytes failed at record "uint64FMT", fileposition "uint64FMT"': %s\n", | ^ /<>/libutil/recordFile.C:233:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 233 | fprintf(stderr, "recordFile::seek() '%s' read of "uint64FMT" bytes failed at record "uint64FMT", fileposition "uint64FMT"': %s\n", | ^ /<>/libutil/recordFile.C:233:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 233 | fprintf(stderr, "recordFile::seek() '%s' read of "uint64FMT" bytes failed at record "uint64FMT", fileposition "uint64FMT"': %s\n", | ^ /<>/libutil/recordFile.C: In constructor ‘recordFile::recordFile(const char*, uint32, uint32, char)’: /<>/libutil/recordFile.C:68:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 68 | write(_file, &recordFileMagic1, sizeof(uint64)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:69:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | write(_file, &recordFileMagic2, sizeof(uint64)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:70:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 70 | write(_file, &_numRecords, sizeof(uint64)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:71:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 71 | write(_file, &_recordSize, sizeof(uint32)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:72:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 72 | write(_file, &_headerSize, sizeof(uint32)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:73:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 73 | write(_file, _header, sizeof(char) * _headerSize); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:112:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 112 | read(_file, &m1, sizeof(uint64)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:113:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | read(_file, &m2, sizeof(uint64)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:114:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 114 | read(_file, &_numRecords, sizeof(uint64)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:115:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 115 | read(_file, &_recordSize, sizeof(uint32)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:116:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 116 | read(_file, &_headerSize, sizeof(uint32)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:117:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 117 | read(_file, _header, sizeof(char) * _headerSize); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C: In destructor ‘recordFile::~recordFile()’: /<>/libutil/recordFile.C:151:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 151 | write(_file, &recordFileMagic1, sizeof(uint64)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:152:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 152 | write(_file, &recordFileMagic2, sizeof(uint64)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:153:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 153 | write(_file, &_numRecords, sizeof(uint64)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:154:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 154 | write(_file, &_recordSize, sizeof(uint32)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:155:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | write(_file, &_headerSize, sizeof(uint32)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:156:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 156 | write(_file, _header, sizeof(char) * _headerSize); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C: In member function ‘void recordFile::flushDirty()’: /<>/libutil/recordFile.C:197:8: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 197 | write(_file, _bfr, _recordSize * _rec); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C: In member function ‘void recordFile::seek(uint64, bool)’: /<>/libutil/recordFile.C:231:7: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | read(_file, _bfr, _recordSize * _bfrmax); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/speedCounter.o -c /<>/libutil/speedCounter.C In file included from /<>/libutil/util++.H:4, from /<>/libutil/speedCounter.C:4: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/sweatShop.o -c /<>/libutil/sweatShop.C In file included from /<>/libutil/util++.H:4, from /<>/libutil/sweatShop.H:7, from /<>/libutil/sweatShop.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libutil/sweatShop.C:127:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "sweatShop::setThreadData()-- worker ID "uint32FMT" more than number of workers="uint32FMT"\n", t, _numberOfWorkers), exit(1); | ^ /<>/libutil/sweatShop.C:127:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "sweatShop::setThreadData()-- worker ID "uint32FMT" more than number of workers="uint32FMT"\n", t, _numberOfWorkers), exit(1); | ^ /<>/libutil/sweatShop.C:390:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 390 | fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" loaded; "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" written; "uint64FMTW(8)" queued for output)\r", | ^ /<>/libutil/sweatShop.C:390:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 390 | fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" loaded; "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" written; "uint64FMTW(8)" queued for output)\r", | ^ /<>/libutil/sweatShop.C:390:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 390 | fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" loaded; "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" written; "uint64FMTW(8)" queued for output)\r", | ^ /<>/libutil/sweatShop.C:390:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 390 | fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" loaded; "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" written; "uint64FMTW(8)" queued for output)\r", | ^ /<>/libutil/sweatShop.C:390:135: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 390 | fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" loaded; "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" written; "uint64FMTW(8)" queued for output)\r", | ^ /<>/libutil/sweatShop.C:425:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 425 | fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" queued for output)\n", | ^ /<>/libutil/sweatShop.C:425:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 425 | fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" queued for output)\n", | ^ /<>/libutil/sweatShop.C:425:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 425 | fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" queued for output)\n", | ^ /<>/libutil/sweatShop.C:560:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 560 | fprintf(stderr, "sweatShop::run()-- Failed to launch worker thread "uint32FMT": %s.\n", i, strerror(err)), exit(1); | ^ /<>/libutil/sweatShop.C:580:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 580 | fprintf(stderr, "sweatShop::run()-- Failed to join worker thread "uint32FMT": %s.\n", i, strerror(err)), exit(1); | ^ gcc -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/kazlib/dict.o -c /<>/libutil/kazlib/dict.c gcc -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/kazlib/except.o -c /<>/libutil/kazlib/except.c gcc -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/kazlib/hash.o -c /<>/libutil/kazlib/hash.c gcc -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/kazlib/list.o -c /<>/libutil/kazlib/list.c gcc -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/kazlib/sfx.o -c /<>/libutil/kazlib/sfx.c rm -f /<>/libutil/libutil.a && ar ruvs /<>/libutil/libutil.a /<>/libutil/file.o /<>/libutil/md5.o /<>/libutil/palloc.o /<>/libutil/qsort_mt.o /<>/libutil/util.o /<>/libutil/bigQueue.o /<>/libutil/bitPackedArray.o /<>/libutil/bitPackedFile.o /<>/libutil/fibonacciNumbers.o /<>/libutil/readBuffer.o /<>/libutil/recordFile.o /<>/libutil/speedCounter.o /<>/libutil/sweatShop.o /<>/libutil/mt19937ar/mt19937ar.o /<>/libutil/kazlib/dict.o /<>/libutil/kazlib/except.o /<>/libutil/kazlib/hash.o /<>/libutil/kazlib/list.o /<>/libutil/kazlib/sfx.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/libutil/libutil.a a - /<>/libutil/file.o a - /<>/libutil/md5.o a - /<>/libutil/palloc.o a - /<>/libutil/qsort_mt.o a - /<>/libutil/util.o a - /<>/libutil/bigQueue.o a - /<>/libutil/bitPackedArray.o a - /<>/libutil/bitPackedFile.o a - /<>/libutil/fibonacciNumbers.o a - /<>/libutil/readBuffer.o a - /<>/libutil/recordFile.o a - /<>/libutil/speedCounter.o a - /<>/libutil/sweatShop.o a - /<>/libutil/mt19937ar/mt19937ar.o a - /<>/libutil/kazlib/dict.o a - /<>/libutil/kazlib/except.o a - /<>/libutil/kazlib/hash.o a - /<>/libutil/kazlib/list.o a - /<>/libutil/kazlib/sfx.o g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o ESTmapper/terminate ESTmapper/terminate.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libbio/ -I/<>/libseq/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacFeature.o -c atac-driver/libatac/atacFeature.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/libatac/atacFeature.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacFeature.C:24: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from atac-driver/libatac/atac.H:34: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from atac-driver/libatac/atac.H:37: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.C:109:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "Feature longer than sequence (by "uint32FMT"bp): seqLen="uint32FMTW(8)" %s\n", | ^ atac-driver/libatac/atacFeature.C:109:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "Feature longer than sequence (by "uint32FMT"bp): seqLen="uint32FMTW(8)" %s\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libbio/ -I/<>/libseq/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacFeatureList.o -c atac-driver/libatac/atacFeatureList.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/libatac/atacFeatureList.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacFeatureList.C:24: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from atac-driver/libatac/atac.H:34: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from atac-driver/libatac/atac.H:37: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/atacFeatureList.C: In member function ‘void atacFeatureList::add(atacFeature&)’: atac-driver/libatac/atacFeatureList.C:50:52: warning: operation on ‘((atacFeatureList*)this)->atacFeatureList::_featuresLen’ may be undefined [-Wsequence-point] 50 | _features[_featuresLen].featureiid = _featuresLen++; | ~~~~~~~~~~~~^~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libbio/ -I/<>/libseq/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacFile.o -c atac-driver/libatac/atacFile.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/libatac/atacFile.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacFile.C:24: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from atac-driver/libatac/atac.H:34: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from atac-driver/libatac/atac.H:37: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/atacFile.C: In member function ‘void atacFileBase::readHeader(char*, FILE*)’: atac-driver/libatac/atacFile.C:255:7: warning: the address of ‘atacFileBase::_fileA’ will never be NULL [-Waddress] 255 | if (_fileA && _fileA[0]) { | ^~~~~~ atac-driver/libatac/atac.H:59:22: note: ‘atacFileBase::_fileA’ declared here 59 | char _fileA[1024]; // The name of our genome files | ^~~~~~ atac-driver/libatac/atacFile.C:262:7: warning: the address of ‘atacFileBase::_fileB’ will never be NULL [-Waddress] 262 | if (_fileB && _fileB[0]) { | ^~~~~~ atac-driver/libatac/atac.H:60:22: note: ‘atacFileBase::_fileB’ declared here 60 | char _fileB[1024]; | ^~~~~~ atac-driver/libatac/atacFile.C: In member function ‘atacMatch* atacFileStream::nextMatch(char)’: atac-driver/libatac/atacFile.C:76:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 76 | fgets(_inLine, 1024, _inFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/libatac/atacFile.C: In member function ‘atacFeature* atacFileStream::nextFeature(char*)’: atac-driver/libatac/atacFile.C:105:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 105 | fgets(_inLine, 1024, _inFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/libatac/atacFile.C: In constructor ‘atacFile::atacFile(const char*)’: atac-driver/libatac/atacFile.C:171:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 171 | fgets(inLine, 1024, inFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ atac-driver/libatac/atacFile.C: In member function ‘void atacFileBase::readHeader(char*, FILE*)’: atac-driver/libatac/atacFile.C:206:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 206 | fgets(inLine, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~~~ atac-driver/libatac/atacFile.C:245:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 245 | fgets(inLine, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libbio/ -I/<>/libseq/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacFileStreamMerge.o -c atac-driver/libatac/atacFileStreamMerge.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/libatac/atacFileStreamMerge.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacFileStreamMerge.C:24: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from atac-driver/libatac/atac.H:34: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from atac-driver/libatac/atac.H:37: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/atacFileStreamMerge.C: In member function ‘void atacFileStreamMerge::addFile(const char*)’: atac-driver/libatac/atacFileStreamMerge.C:86:11: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘class afsm’; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 86 | memcpy(F, _files, sizeof(afsm) * _filesLen); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/libatac/atacFileStreamMerge.C:27:7: note: ‘class afsm’ declared here 27 | class afsm { | ^~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libbio/ -I/<>/libseq/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacMatch.o -c atac-driver/libatac/atacMatch.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/libatac/atac.H:26, from atac-driver/libatac/atacMatch.C:19: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from atac-driver/libatac/atac.H:30: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from atac-driver/libatac/atac.H:34: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from atac-driver/libatac/atac.H:37: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/atacMatch.C:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "Match longer than sequence (by "uint32FMT"bp) in 1: seqLen="uint32FMTW(8)" %s\n", | ^ atac-driver/libatac/atacMatch.C:131:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "Match longer than sequence (by "uint32FMT"bp) in 1: seqLen="uint32FMTW(8)" %s\n", | ^ atac-driver/libatac/atacMatch.C:139:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 139 | fprintf(stderr, "Match longer than sequence (by "uint32FMT"bp) in 2: seqLen="uint32FMTW(8)" %s\n", | ^ atac-driver/libatac/atacMatch.C:139:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 139 | fprintf(stderr, "Match longer than sequence (by "uint32FMT"bp) in 2: seqLen="uint32FMTW(8)" %s\n", | ^ atac-driver/libatac/atacMatch.C: In member function ‘atacMatch::atacMatch(char*, char*, unsigned int, char*, unsigned int, unsigned int, unsigned int, unsigned int, unsigned int, unsigned int, unsigned int, unsigned int)’: atac-driver/libatac/atacMatch.C:50:10: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation] 50 | strncpy(matchuid, muid, 16); | ^ atac-driver/libatac/atacMatch.C: In member function ‘atacMatch::decode(char*)’: atac-driver/libatac/atacMatch.C:100:10: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation] 100 | strncpy(matchuid, S[2], 16); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libbio/ -I/<>/libseq/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacMatchList.o -c atac-driver/libatac/atacMatchList.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/libatac/atacMatchList.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacMatchList.C:24: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from atac-driver/libatac/atac.H:34: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from atac-driver/libatac/atac.H:37: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libbio/ -I/<>/libseq/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacMatchOrder.o -c atac-driver/libatac/atacMatchOrder.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/libatac/atacMatchOrder.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacMatchOrder.C:24: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from atac-driver/libatac/atac.H:34: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from atac-driver/libatac/atac.H:37: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/atacMatchOrder.C:38:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 38 | sprintf(n.matchuid, "merge"uint32FMT, mergeuid); | ^ rm -f atac-driver/libatac/libatac.a && ar ruvs atac-driver/libatac/libatac.a atac-driver/libatac/atacFeature.o atac-driver/libatac/atacFeatureList.o atac-driver/libatac/atacFile.o atac-driver/libatac/atacFileStreamMerge.o atac-driver/libatac/atacMatch.o atac-driver/libatac/atacMatchList.o atac-driver/libatac/atacMatchOrder.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating atac-driver/libatac/libatac.a a - atac-driver/libatac/atacFeature.o a - atac-driver/libatac/atacFeatureList.o a - atac-driver/libatac/atacFile.o a - atac-driver/libatac/atacFileStreamMerge.o a - atac-driver/libatac/atacMatch.o a - atac-driver/libatac/atacMatchList.o a - atac-driver/libatac/atacMatchOrder.o g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap.o -c atac-driver/alignOverlap/overlap.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap.C:19: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ In file included from atac-driver/alignOverlap/overlap.H:41: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ In file included from atac-driver/alignOverlap/overlap.H:45: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); | ^ atac-driver/alignOverlap/overlap.C:123:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 123 | fprintf(stderr, "unmapped: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.unmapped.getSum(), statsB.unmapped.getSum()); | ^ atac-driver/alignOverlap/overlap.C:123:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 123 | fprintf(stderr, "unmapped: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.unmapped.getSum(), statsB.unmapped.getSum()); | ^ atac-driver/alignOverlap/overlap.C:124:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 124 | fprintf(stderr, "unique mapping 1: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.map1unique.getSum(), statsB.map1unique.getSum()); | ^ atac-driver/alignOverlap/overlap.C:124:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 124 | fprintf(stderr, "unique mapping 1: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.map1unique.getSum(), statsB.map1unique.getSum()); | ^ atac-driver/alignOverlap/overlap.C:125:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 125 | fprintf(stderr, "unique mapping 2: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.map2unique.getSum(), statsB.map2unique.getSum()); | ^ atac-driver/alignOverlap/overlap.C:125:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 125 | fprintf(stderr, "unique mapping 2: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.map2unique.getSum(), statsB.map2unique.getSum()); | ^ atac-driver/alignOverlap/overlap.C:126:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 126 | fprintf(stderr, "different: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.different.getSum(), statsB.different.getSum()); | ^ atac-driver/alignOverlap/overlap.C:126:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 126 | fprintf(stderr, "different: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.different.getSum(), statsB.different.getSum()); | ^ atac-driver/alignOverlap/overlap.C:127:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "wild diff: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.wilddiff.getSum(), statsB.wilddiff.getSum()); | ^ atac-driver/alignOverlap/overlap.C:127:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "wild diff: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.wilddiff.getSum(), statsB.wilddiff.getSum()); | ^ atac-driver/alignOverlap/overlap.C:128:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "same: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.same.getSum(), statsB.same.getSum()); | ^ atac-driver/alignOverlap/overlap.C:128:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "same: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.same.getSum(), statsB.same.getSum()); | ^ atac-driver/alignOverlap/overlap.C:129:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "inconsistent: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.inconsistent.getSum(), statsB.inconsistent.getSum()); | ^ atac-driver/alignOverlap/overlap.C:129:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "inconsistent: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.inconsistent.getSum(), statsB.inconsistent.getSum()); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-find.o -c atac-driver/alignOverlap/overlap-find.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-find.C:19: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ In file included from atac-driver/alignOverlap/overlap.H:41: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ In file included from atac-driver/alignOverlap/overlap.H:45: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); | ^ atac-driver/alignOverlap/overlap-find.C:45:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 45 | fprintf(stderr, "isolated Unique: map1: "uint32FMT" map2: "uint32FMT"\n", sumA, sumB); | ^ atac-driver/alignOverlap/overlap-find.C:45:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 45 | fprintf(stderr, "isolated Unique: map1: "uint32FMT" map2: "uint32FMT"\n", sumA, sumB); | ^ atac-driver/alignOverlap/overlap-find.C:59:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 59 | fprintf(stderr, "got invalid type; "uint32FMT" -- %c\n", type, (char)type), exit(1); | ^ atac-driver/alignOverlap/overlap-find.C:91:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 91 | fprintf(stderr, "%s: "uint32FMT" len:"uint32FMT"\n", msg, count, len); | ^ atac-driver/alignOverlap/overlap-find.C:91:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 91 | fprintf(stderr, "%s: "uint32FMT" len:"uint32FMT"\n", msg, count, len); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-matchTree.o -c atac-driver/alignOverlap/overlap-matchTree.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-matchTree.C:19: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ In file included from atac-driver/alignOverlap/overlap.H:41: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ In file included from atac-driver/alignOverlap/overlap.H:45: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-printAnno.o -c atac-driver/alignOverlap/overlap-printAnno.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-printAnno.C:19: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ In file included from atac-driver/alignOverlap/overlap.H:41: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ In file included from atac-driver/alignOverlap/overlap.H:45: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); | ^ atac-driver/alignOverlap/overlap-printAnno.C:46:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 46 | fprintf(F, "%c "uint32FMTW(4)":"uint32FMTW(09)"-"uint32FMTW(09)"["uint32FMTW(6)"] ", | ^ atac-driver/alignOverlap/overlap-printAnno.C:46:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 46 | fprintf(F, "%c "uint32FMTW(4)":"uint32FMTW(09)"-"uint32FMTW(09)"["uint32FMTW(6)"] ", | ^ atac-driver/alignOverlap/overlap-printAnno.C:46:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 46 | fprintf(F, "%c "uint32FMTW(4)":"uint32FMTW(09)"-"uint32FMTW(09)"["uint32FMTW(6)"] ", | ^ atac-driver/alignOverlap/overlap-printAnno.C:46:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 46 | fprintf(F, "%c "uint32FMTW(4)":"uint32FMTW(09)"-"uint32FMTW(09)"["uint32FMTW(6)"] ", | ^ atac-driver/alignOverlap/overlap-printAnno.C:63:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 63 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m1->iid2, sta, end); | ^ atac-driver/alignOverlap/overlap-printAnno.C:63:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 63 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m1->iid2, sta, end); | ^ atac-driver/alignOverlap/overlap-printAnno.C:63:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 63 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m1->iid2, sta, end); | ^ atac-driver/alignOverlap/overlap-printAnno.C:65:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m1->iid1, m1->pos1 + off1, m1->pos1 + off1 + len); | ^ atac-driver/alignOverlap/overlap-printAnno.C:65:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m1->iid1, m1->pos1 + off1, m1->pos1 + off1 + len); | ^ atac-driver/alignOverlap/overlap-printAnno.C:65:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m1->iid1, m1->pos1 + off1, m1->pos1 + off1 + len); | ^ atac-driver/alignOverlap/overlap-printAnno.C:69:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 69 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", uint32ZERO, uint32ZERO, uint32ZERO); | ^ atac-driver/alignOverlap/overlap-printAnno.C:69:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 69 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", uint32ZERO, uint32ZERO, uint32ZERO); | ^ atac-driver/alignOverlap/overlap-printAnno.C:69:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 69 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", uint32ZERO, uint32ZERO, uint32ZERO); | ^ atac-driver/alignOverlap/overlap-printAnno.C:85:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 85 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m2->iid2, sta, end); | ^ atac-driver/alignOverlap/overlap-printAnno.C:85:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 85 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m2->iid2, sta, end); | ^ atac-driver/alignOverlap/overlap-printAnno.C:85:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 85 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m2->iid2, sta, end); | ^ atac-driver/alignOverlap/overlap-printAnno.C:87:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 87 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m2->iid1, m2->pos1 + off2, m2->pos1 + off2 + len); | ^ atac-driver/alignOverlap/overlap-printAnno.C:87:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 87 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m2->iid1, m2->pos1 + off2, m2->pos1 + off2 + len); | ^ atac-driver/alignOverlap/overlap-printAnno.C:87:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 87 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m2->iid1, m2->pos1 + off2, m2->pos1 + off2 + len); | ^ atac-driver/alignOverlap/overlap-printAnno.C:91:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 91 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", uint32ZERO, uint32ZERO, uint32ZERO); | ^ atac-driver/alignOverlap/overlap-printAnno.C:91:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 91 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", uint32ZERO, uint32ZERO, uint32ZERO); | ^ atac-driver/alignOverlap/overlap-printAnno.C:91:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 91 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", uint32ZERO, uint32ZERO, uint32ZERO); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-sort.o -c atac-driver/alignOverlap/overlap-sort.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-sort.C:19: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ In file included from atac-driver/alignOverlap/overlap.H:41: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ In file included from atac-driver/alignOverlap/overlap.H:45: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); | ^ ln -f /<>/atac-driver/alignOverlap/overlap-process.C /<>/atac-driver/alignOverlap/overlap-process1.C g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -DINDEX=1 -DNAME=process1 -DPOS1=pos1 -DPOS2=pos2 -DLEN2=len2 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-process1.o -c atac-driver/alignOverlap/overlap-process1.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-process1.C:19: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ In file included from atac-driver/alignOverlap/overlap.H:41: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ In file included from atac-driver/alignOverlap/overlap.H:45: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); | ^ ln -f /<>/atac-driver/alignOverlap/overlap-process.C /<>/atac-driver/alignOverlap/overlap-process2.C g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -DINDEX=2 -DNAME=process2 -DPOS1=pos2 -DPOS2=pos1 -DLEN2=len1 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-process2.o -c atac-driver/alignOverlap/overlap-process2.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-process2.C:19: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ In file included from atac-driver/alignOverlap/overlap.H:41: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ In file included from atac-driver/alignOverlap/overlap.H:45: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atac-driver/alignOverlap/overlap atac-driver/alignOverlap/overlap.o atac-driver/alignOverlap/overlap-find.o atac-driver/alignOverlap/overlap-matchTree.o atac-driver/alignOverlap/overlap-printAnno.o atac-driver/alignOverlap/overlap-sort.o atac-driver/alignOverlap/overlap-process1.o atac-driver/alignOverlap/overlap-process2.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/gapShifter.o -c atac-driver/gapShifter/gapShifter.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/atac-driver/libatac/atac.H:26, from atac-driver/gapShifter/gapShifter.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:203:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 203 | fprintf(stderr, "iid1 "uint32FMT", iid2 "uint32FMT"\n", iid1, iid2); | ^ atac-driver/gapShifter/gapShifter.C:203:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 203 | fprintf(stderr, "iid1 "uint32FMT", iid2 "uint32FMT"\n", iid1, iid2); | ^ atac-driver/gapShifter/gapShifter.C:223:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 223 | fprintf(stderr, "iid1 "uint32FMT", iid2 "uint32FMT"\n", iid1, iid2); | ^ atac-driver/gapShifter/gapShifter.C:223:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 223 | fprintf(stderr, "iid1 "uint32FMT", iid2 "uint32FMT"\n", iid1, iid2); | ^ atac-driver/gapShifter/gapShifter.C:510:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 510 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:510:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 510 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:510:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 510 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:510:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 510 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:510:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 510 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:515:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 515 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:515:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 515 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:515:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 515 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:515:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 515 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:515:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 515 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:523:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 523 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:523:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 523 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:523:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 523 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:523:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 523 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:523:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 523 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:528:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 528 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:528:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 528 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:528:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 528 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:528:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 528 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:528:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 528 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:738:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 738 | fprintf(stderr, "Shifting gaps of length at most "uint32FMT" bases, to the %s.\n", gapLimit, (shiftRight) ? "right" : "left"); | ^ atac-driver/gapShifter/gapShifter.C:750:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 750 | fprintf(stderr, "numShifted = "uint32FMT"\n", numShifted); | ^ atac-driver/gapShifter/gapShifter.C:751:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 751 | fprintf(stderr, "numNotShifted = "uint32FMT"\n", numNotShifted); | ^ atac-driver/gapShifter/gapShifter.C:752:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 752 | fprintf(stderr, "numDiffSeq = "uint32FMT"\n", numDiffSeq); | ^ atac-driver/gapShifter/gapShifter.C:753:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 753 | fprintf(stderr, "numDiffOri = "uint32FMT"\n", numDiffOri); | ^ atac-driver/gapShifter/gapShifter.C:754:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 754 | fprintf(stderr, "numZeroLen = "uint32FMT"\n", numZeroLen); | ^ atac-driver/gapShifter/gapShifter.C:755:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 755 | fprintf(stderr, "numOutOfOrder = "uint32FMT"\n", numOutOfOrder); | ^ atac-driver/gapShifter/gapShifter.C:756:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 756 | fprintf(stderr, "numNotAdjacent = "uint32FMT"\n", numNotAdjacent); | ^ atac-driver/gapShifter/gapShifter.C:757:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 757 | fprintf(stderr, "numNoGap = "uint32FMT"\n", numNoGap); | ^ atac-driver/gapShifter/gapShifter.C:758:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 758 | fprintf(stderr, "numGapTooBig = "uint32FMT"\n", numGapTooBig); | ^ atac-driver/gapShifter/gapShifter.C:759:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 759 | fprintf(stderr, "numOverlapping = "uint32FMT"\n", numOverlapping); | ^ atac-driver/gapShifter/gapShifter.C:762:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 762 | fprintf(stderr, "amountShifted["uint32FMT"] = "uint32FMT" (number of gaps shifted by [number of bases])\n", x, amountShifted[x]); | ^ atac-driver/gapShifter/gapShifter.C:762:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 762 | fprintf(stderr, "amountShifted["uint32FMT"] = "uint32FMT" (number of gaps shifted by [number of bases])\n", x, amountShifted[x]); | ^ atac-driver/gapShifter/gapShifter.C:764:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 764 | fprintf(stderr, "shifted "uint32FMT" out of "uint32FMT" (%6.2f%%)\n", gapsShifted, ML.numMatches(), (double)gapsShifted / (double)ML.numMatches() * 100.0); | ^ atac-driver/gapShifter/gapShifter.C:764:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 764 | fprintf(stderr, "shifted "uint32FMT" out of "uint32FMT" (%6.2f%%)\n", gapsShifted, ML.numMatches(), (double)gapsShifted / (double)ML.numMatches() * 100.0); | ^ atac-driver/gapShifter/gapShifter.C:780:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 780 | fprintf(stdout, "M u %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/gapShifter.C:780:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 780 | fprintf(stdout, "M u %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/gapShifter.C:780:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 780 | fprintf(stdout, "M u %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/gapShifter.C:780:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 780 | fprintf(stdout, "M u %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/gapShifter.C:780:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 780 | fprintf(stdout, "M u %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/gapShifter.C:780:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 780 | fprintf(stdout, "M u %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/gapShifter atac-driver/gapShifter/gapShifter.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/extractSequence.o -c atac-driver/gapShifter/extractSequence.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/atac-driver/libatac/atac.H:26, from atac-driver/gapShifter/extractSequence.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/gapShifter/extractSequence.C:110:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(Aoutput, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" match %s(%s)\n", | ^ atac-driver/gapShifter/extractSequence.C:110:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(Aoutput, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" match %s(%s)\n", | ^ atac-driver/gapShifter/extractSequence.C:110:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(Aoutput, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" match %s(%s)\n", | ^ atac-driver/gapShifter/extractSequence.C:121:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 121 | fprintf(Boutput, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" match %s(%s)\n", | ^ atac-driver/gapShifter/extractSequence.C:121:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 121 | fprintf(Boutput, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" match %s(%s)\n", | ^ atac-driver/gapShifter/extractSequence.C:121:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 121 | fprintf(Boutput, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" match %s(%s)\n", | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/extractSequence atac-driver/gapShifter/extractSequence.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/extractUnmapped.o -c atac-driver/gapShifter/extractUnmapped.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/gapShifter/extractUnmapped.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/extractUnmapped.C:24: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/gapShifter/extractUnmapped.C:105:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 105 | fprintf(output, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" between match %s(%s) and %s(%s)\n", | ^ atac-driver/gapShifter/extractUnmapped.C:105:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 105 | fprintf(output, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" between match %s(%s) and %s(%s)\n", | ^ atac-driver/gapShifter/extractUnmapped.C:105:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 105 | fprintf(output, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" between match %s(%s) and %s(%s)\n", | ^ atac-driver/gapShifter/extractUnmapped.C:583:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 583 | fprintf(stderr, "Done masking. "uint32FMT" in A, "uint32FMT" in B.\n", stats[0], stats[1]); | ^ atac-driver/gapShifter/extractUnmapped.C:583:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 583 | fprintf(stderr, "Done masking. "uint32FMT" in A, "uint32FMT" in B.\n", stats[0], stats[1]); | ^ atac-driver/gapShifter/extractUnmapped.C: In function ‘int main(int, char**)’: atac-driver/gapShifter/extractUnmapped.C:541:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 541 | fgets(L, 1024, F); | ~~~~~^~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/extractUnmapped atac-driver/gapShifter/extractUnmapped.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/coalesceMatches.o -c atac-driver/gapShifter/coalesceMatches.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/gapShifter/coalesceMatches.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/coalesceMatches.C:24: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/coalesceMatches atac-driver/gapShifter/coalesceMatches.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/correctGaps.o -c atac-driver/gapShifter/correctGaps.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/gapShifter/correctGaps.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/correctGaps.C:24: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/gapShifter/correctGaps.C:138:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 138 | fprintf(logFile, "HEY! F gap of size "uint32FMT" not in a run?\n", gap1); | ^ atac-driver/gapShifter/correctGaps.C:200:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 200 | fprintf(logFile, "HEY! R gap of size "uint32FMT" not in a run?\n", gap1); | ^ atac-driver/gapShifter/correctGaps.C:222:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(logFile, "CLOSE "uint32FMT"----------------------------------------\n", gap1); | ^ atac-driver/gapShifter/correctGaps.C:235:22: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 235 | fprintf(logFile, "At gapSize="uint32FMT" closed "uint32FMT" f-gaps and "uint32FMT" r-gaps.\n", gapsize, fgaps, rgaps); | ^ atac-driver/gapShifter/correctGaps.C:235:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 235 | fprintf(logFile, "At gapSize="uint32FMT" closed "uint32FMT" f-gaps and "uint32FMT" r-gaps.\n", gapsize, fgaps, rgaps); | ^ atac-driver/gapShifter/correctGaps.C:235:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 235 | fprintf(logFile, "At gapSize="uint32FMT" closed "uint32FMT" f-gaps and "uint32FMT" r-gaps.\n", gapsize, fgaps, rgaps); | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/correctGaps atac-driver/gapShifter/correctGaps.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/testAtac.o -c atac-driver/gapShifter/testAtac.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/gapShifter/testAtac.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/testAtac.C:24: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/gapShifter/testAtac.C:89:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 89 | fprintf(stderr, "match "uint32FMT" is only %6.2f%% identity: ", | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/testAtac atac-driver/gapShifter/testAtac.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/cleanAtac.o -c atac-driver/gapShifter/cleanAtac.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/gapShifter/cleanAtac.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/cleanAtac.C:24: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/gapShifter/cleanAtac.C:149:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 149 | fprintf(stderr, "match "uint32FMT" is only %6.2f%% identity and "uint32FMT" long: ", | ^ atac-driver/gapShifter/cleanAtac.C:149:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 149 | fprintf(stderr, "match "uint32FMT" is only %6.2f%% identity and "uint32FMT" long: ", | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/cleanAtac atac-driver/gapShifter/cleanAtac.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/projectFeatures.o -c atac-driver/gapShifter/projectFeatures.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/gapShifter/projectFeatures.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/projectFeatures.C:24: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/gapShifter/projectFeatures.C:72:2: warning: #warning BROKEN [-Wcpp] 72 | #warning BROKEN | ^~~~~~~ atac-driver/gapShifter/projectFeatures.C:132:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:132:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:132:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:132:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:132:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:132:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:132:124: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:146:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 146 | fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:146:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 146 | fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:146:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 146 | fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:146:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 146 | fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:146:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 146 | fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:146:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 146 | fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:146:124: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 146 | fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:171:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:171:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:171:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:171:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:171:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:171:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:171:124: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:192:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:192:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:192:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:192:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:192:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:192:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:192:124: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/projectFeatures atac-driver/gapShifter/projectFeatures.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/lengthFilter/lengthFilter.o -c atac-driver/lengthFilter/lengthFilter.C In file included from /<>/libutil/util++.H:4, from atac-driver/lengthFilter/lengthFilter.C:24: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ atac-driver/lengthFilter/lengthFilter.C:46:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 46 | sprintf(inLine, "/globalMatchMinSize="uint32FMT"\n", minLength); | ^ atac-driver/lengthFilter/lengthFilter.C:57:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 57 | fprintf(stdout, "/globalMatchMinSize="uint32FMT"\n", minLength); | ^ atac-driver/lengthFilter/lengthFilter.C:114:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 114 | fprintf(stderr, "lengthFilter: Discarded "uint32FMTW(8)" matches with total length "uint32FMTW(10)", %7.3f%% of the sequence in matches.\n", | ^ atac-driver/lengthFilter/lengthFilter.C:114:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 114 | fprintf(stderr, "lengthFilter: Discarded "uint32FMTW(8)" matches with total length "uint32FMTW(10)", %7.3f%% of the sequence in matches.\n", | ^ atac-driver/lengthFilter/lengthFilter.C:116:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 116 | fprintf(stderr, "lengthFilter: Saved "uint32FMTW(8)" matches with total length "uint32FMTW(10)", %7.3f%% of the sequence in matches.\n", | ^ atac-driver/lengthFilter/lengthFilter.C:116:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 116 | fprintf(stderr, "lengthFilter: Saved "uint32FMTW(8)" matches with total length "uint32FMTW(10)", %7.3f%% of the sequence in matches.\n", | ^ atac-driver/lengthFilter/lengthFilter.C: In function ‘void readHeader(char*, FILE*, uint32&, FILE*)’: atac-driver/lengthFilter/lengthFilter.C:34:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 34 | fgets(inLine, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~~~ atac-driver/lengthFilter/lengthFilter.C:53:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 53 | fgets(inLine, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~~~ atac-driver/lengthFilter/lengthFilter.C: In function ‘int main(int, char**)’: atac-driver/lengthFilter/lengthFilter.C:111:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 111 | fgets(inLine, 1024, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atac-driver/lengthFilter/lengthFilter atac-driver/lengthFilter/lengthFilter.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/matchExtender/matchExtender.o -c atac-driver/matchExtender/matchExtender.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/atac-driver/libatac/atac.H:26, from atac-driver/matchExtender/matchExtender.C:27: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/matchExtender/matchExtender.C:192:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" 1\n", | ^ atac-driver/matchExtender/matchExtender.C:192:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" 1\n", | ^ atac-driver/matchExtender/matchExtender.C:192:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" 1\n", | ^ atac-driver/matchExtender/matchExtender.C:192:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" 1\n", | ^ atac-driver/matchExtender/matchExtender.C:192:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" 1\n", | ^ atac-driver/matchExtender/matchExtender.C:192:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" 1\n", | ^ atac-driver/matchExtender/matchExtender.C:201:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" -1\n", | ^ atac-driver/matchExtender/matchExtender.C:201:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" -1\n", | ^ atac-driver/matchExtender/matchExtender.C:201:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" -1\n", | ^ atac-driver/matchExtender/matchExtender.C:201:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" -1\n", | ^ atac-driver/matchExtender/matchExtender.C:201:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" -1\n", | ^ atac-driver/matchExtender/matchExtender.C:201:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" -1\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/matchExtender/matchExtender-dump.o -c atac-driver/matchExtender/matchExtender-dump.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/matchExtender/matchExtender-dump.C:25: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/matchExtender/match.H:8, from atac-driver/matchExtender/matchExtender-dump.C:26: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/matchExtender/matchExtender-dump.C:31:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 31 | fprintf(out, "%s: ID:%s range1:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT")\n", | ^ atac-driver/matchExtender/matchExtender-dump.C:31:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 31 | fprintf(out, "%s: ID:%s range1:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT")\n", | ^ atac-driver/matchExtender/matchExtender-dump.C:31:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 31 | fprintf(out, "%s: ID:%s range1:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT")\n", | ^ atac-driver/matchExtender/matchExtender-dump.C:31:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 31 | fprintf(out, "%s: ID:%s range1:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT")\n", | ^ atac-driver/matchExtender/matchExtender-dump.C:34:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(out, "%s ID:%s range2:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT") diag:"uint32FMT" %s\n", | ^ atac-driver/matchExtender/matchExtender-dump.C:34:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(out, "%s ID:%s range2:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT") diag:"uint32FMT" %s\n", | ^ atac-driver/matchExtender/matchExtender-dump.C:34:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(out, "%s ID:%s range2:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT") diag:"uint32FMT" %s\n", | ^ atac-driver/matchExtender/matchExtender-dump.C:34:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(out, "%s ID:%s range2:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT") diag:"uint32FMT" %s\n", | ^ atac-driver/matchExtender/matchExtender-dump.C:34:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(out, "%s ID:%s range2:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT") diag:"uint32FMT" %s\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/matchExtender/matchExtender-func.o -c atac-driver/matchExtender/matchExtender-func.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/matchExtender/matchExtender-func.C:26: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/matchExtender/matchExtender-func.C:27: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atac-driver/matchExtender/matchExtender atac-driver/matchExtender/matchExtender.o atac-driver/matchExtender/matchExtender-dump.o atac-driver/matchExtender/matchExtender-func.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/mismatchCounter/mismatchCounter.o -c atac-driver/mismatchCounter/mismatchCounter.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/mismatchCounter/mismatchCounter.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/mismatchCounter/mismatchCounter.C:25: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/mismatchCounter/mismatchCounter.C:197:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 197 | fprintf(stderr, "globalSequence = "uint32FMT"\n", globalSequence); | ^ atac-driver/mismatchCounter/mismatchCounter.C:198:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 198 | fprintf(stderr, "globalMismatches = "uint32FMT"\n", globalMismatches); | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atac-driver/mismatchCounter/mismatchCounter atac-driver/mismatchCounter/mismatchCounter.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/statsGenerator/statsGenerator.o -c atac-driver/statsGenerator/statsGenerator.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/atac-driver/libatac/atac.H:26, from atac-driver/statsGenerator/statsGenerator.C:26: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/statsGenerator/statsGenerator.C:91:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 91 | fprintf(stdout, "histogram %s "uint32FMT" items %8.3f average %8.3f std.dev.\n", | ^ atac-driver/statsGenerator/statsGenerator.C:102:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 102 | fprintf(out, uint64FMT" "uint32FMT"\n", i * _b, _h[i]); | ^ atac-driver/statsGenerator/statsGenerator.C:103:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 103 | fprintf(out, ">"uint64FMT" "uint32FMT"\n", _m, _l); | ^ atac-driver/statsGenerator/statsGenerator.C:103:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 103 | fprintf(out, ">"uint64FMT" "uint32FMT"\n", _m, _l); | ^ atac-driver/statsGenerator/statsGenerator.C:133:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 133 | fprintf(out, "plot [0:"uint64FMT"][0:"uint64FMT"] \"%s.%s.histogramdat\" using 2 with lines\n", | ^ atac-driver/statsGenerator/statsGenerator.C:133:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 133 | fprintf(out, "plot [0:"uint64FMT"][0:"uint64FMT"] \"%s.%s.histogramdat\" using 2 with lines\n", | ^ atac-driver/statsGenerator/statsGenerator.C:136:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | fprintf(out, "plot [0:"uint64FMT"][0:"uint64FMT"] \"%s.%s.histogramdat\" using 2 with lines\n", | ^ atac-driver/statsGenerator/statsGenerator.C:136:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | fprintf(out, "plot [0:"uint64FMT"][0:"uint64FMT"] \"%s.%s.histogramdat\" using 2 with lines\n", | ^ atac-driver/statsGenerator/statsGenerator.C:172:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 172 | fprintf(stdout, "totalLength %s "uint64FMT" %s "uint64FMT" # all letters, including N\n", | ^ atac-driver/statsGenerator/statsGenerator.C:172:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 172 | fprintf(stdout, "totalLength %s "uint64FMT" %s "uint64FMT" # all letters, including N\n", | ^ atac-driver/statsGenerator/statsGenerator.C:193:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 193 | fprintf(stdout, "totalLength %s "uint64FMT" %s "uint64FMT" # ACGT only\n", | ^ atac-driver/statsGenerator/statsGenerator.C:193:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 193 | fprintf(stdout, "totalLength %s "uint64FMT" %s "uint64FMT" # ACGT only\n", | ^ atac-driver/statsGenerator/statsGenerator.C:282:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 282 | fprintf(stdout, "numberOfItems "uint64FMT"\n", (uint64)ifa.numberOfIntervals()); | ^ atac-driver/statsGenerator/statsGenerator.C:283:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 283 | fprintf(stdout, "totalLength "uint64FMT" # sum of lengths of all features\n", ifa.sumOfLengths()); | ^ atac-driver/statsGenerator/statsGenerator.C:285:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 285 | fprintf(stdout, "numberOfItems "uint64FMT" # after merging overlapping regions\n", (uint64)ifa.numberOfIntervals()); | ^ atac-driver/statsGenerator/statsGenerator.C:286:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 286 | fprintf(stdout, "coveredLength "uint64FMT" # sequence covered by a feature, including N\n", ifa.sumOfLengths()); | ^ atac-driver/statsGenerator/statsGenerator.C:287:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 287 | fprintf(stdout, "coveredLength "uint64FMT" # sequence covered by a feature, ACGT only\n", tandemRepeatACGTLength(ifa, offset1, A)); | ^ atac-driver/statsGenerator/statsGenerator.C:289:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 289 | fprintf(stdout, "numberOfItems "uint64FMT" # after merging overlapping regions, only in matches\n", (uint64)mma.numberOfIntervals()); | ^ atac-driver/statsGenerator/statsGenerator.C:290:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 290 | fprintf(stdout, "inMatches "uint64FMT" # sequence covered by a feature and in a match, including N\n", mma.sumOfLengths()); | ^ atac-driver/statsGenerator/statsGenerator.C:291:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 291 | fprintf(stdout, "inMatches "uint64FMT" # sequence covered by a feature and in a match, ACGT only\n", tandemRepeatACGTLength(mma, offset1, A)); | ^ atac-driver/statsGenerator/statsGenerator.C:295:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 295 | fprintf(stdout, "numberOfItems "uint64FMT"\n", (uint64)ifb.numberOfIntervals()); | ^ atac-driver/statsGenerator/statsGenerator.C:296:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 296 | fprintf(stdout, "totalLength "uint64FMT" # sum of lengths of all features\n", ifb.sumOfLengths()); | ^ atac-driver/statsGenerator/statsGenerator.C:298:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 298 | fprintf(stdout, "numberOfItems "uint64FMT" # after merging overlapping regions\n", (uint64)ifb.numberOfIntervals()); | ^ atac-driver/statsGenerator/statsGenerator.C:299:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 299 | fprintf(stdout, "coveredLength "uint64FMT" # sequence covered by a feature, including N\n", ifb.sumOfLengths()); | ^ atac-driver/statsGenerator/statsGenerator.C:300:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 300 | fprintf(stdout, "coveredLength "uint64FMT" # sequence covered by a feature, ACGT only\n", tandemRepeatACGTLength(ifb, offset2, B)); | ^ atac-driver/statsGenerator/statsGenerator.C:302:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 302 | fprintf(stdout, "numberOfItems "uint64FMT" # after merging overlapping regions, only in matches\n", (uint64)mmb.numberOfIntervals()); | ^ atac-driver/statsGenerator/statsGenerator.C:303:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 303 | fprintf(stdout, "inMatches "uint64FMT" # sequence covered by a feature and in a match, including N\n", mmb.sumOfLengths()); | ^ atac-driver/statsGenerator/statsGenerator.C:304:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 304 | fprintf(stdout, "inMatches "uint64FMT" # sequence covered by a feature and in a match, ACGT only\n", tandemRepeatACGTLength(mmb, offset2, B)); | ^ atac-driver/statsGenerator/statsGenerator.C:335:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 335 | fprintf(stdout, "numberOfItems "uint64FMT"\n", (uint64)matches.numberOfMatches()); | ^ atac-driver/statsGenerator/statsGenerator.C:337:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 337 | fprintf(stdout, "matchLength %s "uint64FMT" %s "uint64FMT" # Sum of lengths of sequence in matches\n", | ^ atac-driver/statsGenerator/statsGenerator.C:337:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 337 | fprintf(stdout, "matchLength %s "uint64FMT" %s "uint64FMT" # Sum of lengths of sequence in matches\n", | ^ atac-driver/statsGenerator/statsGenerator.C:349:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 349 | fprintf(stdout, "coveredLength %s "uint64FMT" %s "uint64FMT" # sequence covered by a match, including N\n", | ^ atac-driver/statsGenerator/statsGenerator.C:349:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 349 | fprintf(stdout, "coveredLength %s "uint64FMT" %s "uint64FMT" # sequence covered by a match, including N\n", | ^ atac-driver/statsGenerator/statsGenerator.C:353:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 353 | fprintf(stdout, "coveredLength %s "uint64FMT" %s "uint64FMT" # sequence covered by a match, ACGT only (new)\n", | ^ atac-driver/statsGenerator/statsGenerator.C:353:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 353 | fprintf(stdout, "coveredLength %s "uint64FMT" %s "uint64FMT" # sequence covered by a match, ACGT only (new)\n", | ^ atac-driver/statsGenerator/statsGenerator.C:409:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 409 | fprintf(out, uint64FMT" "uint32FMT"\n", n, n50[iter-1]); | ^ atac-driver/statsGenerator/statsGenerator.C:507:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 507 | fprintf(stdout, "chrCoveredLength["uint32FMTW(2)"] %s "uint64FMT" "uint64FMT" %6.2f%% "uint64FMT" "uint64FMT" %6.2f%% # seqCov, totalSeq for both ALL and ACGTonly\n", | ^ atac-driver/statsGenerator/statsGenerator.C:507:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 507 | fprintf(stdout, "chrCoveredLength["uint32FMTW(2)"] %s "uint64FMT" "uint64FMT" %6.2f%% "uint64FMT" "uint64FMT" %6.2f%% # seqCov, totalSeq for both ALL and ACGTonly\n", | ^ atac-driver/statsGenerator/statsGenerator.C:507:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 507 | fprintf(stdout, "chrCoveredLength["uint32FMTW(2)"] %s "uint64FMT" "uint64FMT" %6.2f%% "uint64FMT" "uint64FMT" %6.2f%% # seqCov, totalSeq for both ALL and ACGTonly\n", | ^ atac-driver/statsGenerator/statsGenerator.C:507:82: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 507 | fprintf(stdout, "chrCoveredLength["uint32FMTW(2)"] %s "uint64FMT" "uint64FMT" %6.2f%% "uint64FMT" "uint64FMT" %6.2f%% # seqCov, totalSeq for both ALL and ACGTonly\n", | ^ atac-driver/statsGenerator/statsGenerator.C:507:104: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 507 | fprintf(stdout, "chrCoveredLength["uint32FMTW(2)"] %s "uint64FMT" "uint64FMT" %6.2f%% "uint64FMT" "uint64FMT" %6.2f%% # seqCov, totalSeq for both ALL and ACGTonly\n", | ^ atac-driver/statsGenerator/statsGenerator.C:516:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 516 | sprintf(label, "chr"uint32FMTW(02)"full", c); | ^ atac-driver/statsGenerator/statsGenerator.C:520:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 520 | sprintf(label, "chr"uint32FMTW(02)"acgt", c); | ^ atac-driver/statsGenerator/statsGenerator.C:628:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 628 | fprintf(stdout, "runMissingFull %s "uint64FMT" %s "uint64FMT" # sequence in run, not covered, including N\n", | ^ atac-driver/statsGenerator/statsGenerator.C:628:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 628 | fprintf(stdout, "runMissingFull %s "uint64FMT" %s "uint64FMT" # sequence in run, not covered, including N\n", | ^ atac-driver/statsGenerator/statsGenerator.C:631:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 631 | fprintf(stdout, "runMissingFull %s "uint64FMT" %s "uint64FMT" # sequence in run, not covered, ACGT only\n", | ^ atac-driver/statsGenerator/statsGenerator.C:631:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 631 | fprintf(stdout, "runMissingFull %s "uint64FMT" %s "uint64FMT" # sequence in run, not covered, ACGT only\n", | ^ atac-driver/statsGenerator/statsGenerator.C: In function ‘void tandemRepeatStats(atacFileStream&, atacFileStream&, atacFile&, seqCache*, seqCache*)’: atac-driver/statsGenerator/statsGenerator.C:267:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 267 | while ((f = featuresA.nextFeature("tr")) != 0L) | ^~~~ atac-driver/statsGenerator/statsGenerator.C:269:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 269 | while ((f = featuresB.nextFeature("tr")) != 0L) | ^~~~ atac-driver/statsGenerator/statsGenerator.C: In function ‘MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’: atac-driver/statsGenerator/statsGenerator.C:99:29: warning: ‘.histogramdat’ directive writing 13 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 99 | sprintf(filename, "%s.%s.histogramdat", prefix, label); | ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:964, from atac-driver/statsGenerator/statsGenerator.C:21: In function ‘sprintf’, inlined from ‘histogram::dump(char const*, char const*)’ at atac-driver/statsGenerator/statsGenerator.C:99:12, inlined from ‘histogram::dump(char const*, char const*)’ at atac-driver/statsGenerator/statsGenerator.C:95:14, inlined from ‘MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’ at atac-driver/statsGenerator/statsGenerator.C:517:23: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 15 or more bytes (assuming 1038) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C: In function ‘MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’: atac-driver/statsGenerator/statsGenerator.C:127:29: warning: ‘.histogram.gnuplot’ directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 127 | sprintf(filename, "%s.%s.histogram.gnuplot", prefix, label); | ^~~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘histogram::plot(char const*, char const*)’ at atac-driver/statsGenerator/statsGenerator.C:127:12, inlined from ‘MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’ at atac-driver/statsGenerator/statsGenerator.C:518:23: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 20 or more bytes (assuming 1043) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C: In function ‘MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’: atac-driver/statsGenerator/statsGenerator.C:140:37: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 140 | sprintf(filename, "gnuplot < %s.%s.histogram.gnuplot", prefix, label); | ^~ ...... 518 | hist1full[c]->plot(prefix, label); | ~~~~~ In function ‘sprintf’, inlined from ‘histogram::plot(char const*, char const*)’ at atac-driver/statsGenerator/statsGenerator.C:140:12, inlined from ‘MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’ at atac-driver/statsGenerator/statsGenerator.C:518:23: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 30 or more bytes (assuming 1053) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C: In function ‘MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’: atac-driver/statsGenerator/statsGenerator.C:99:29: warning: ‘.histogramdat’ directive writing 13 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 99 | sprintf(filename, "%s.%s.histogramdat", prefix, label); | ^~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘histogram::dump(char const*, char const*)’ at atac-driver/statsGenerator/statsGenerator.C:99:12, inlined from ‘histogram::dump(char const*, char const*)’ at atac-driver/statsGenerator/statsGenerator.C:95:14, inlined from ‘MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’ at atac-driver/statsGenerator/statsGenerator.C:521:23: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 15 or more bytes (assuming 1038) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C: In function ‘MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’: atac-driver/statsGenerator/statsGenerator.C:127:29: warning: ‘.histogram.gnuplot’ directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 127 | sprintf(filename, "%s.%s.histogram.gnuplot", prefix, label); | ^~~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘histogram::plot(char const*, char const*)’ at atac-driver/statsGenerator/statsGenerator.C:127:12, inlined from ‘MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’ at atac-driver/statsGenerator/statsGenerator.C:522:23: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 20 or more bytes (assuming 1043) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C: In function ‘MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’: atac-driver/statsGenerator/statsGenerator.C:140:37: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 140 | sprintf(filename, "gnuplot < %s.%s.histogram.gnuplot", prefix, label); | ^~ ...... 522 | hist1acgt[c]->plot(prefix, label); | ~~~~~ In function ‘sprintf’, inlined from ‘histogram::plot(char const*, char const*)’ at atac-driver/statsGenerator/statsGenerator.C:140:12, inlined from ‘MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’ at atac-driver/statsGenerator/statsGenerator.C:522:23: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 30 or more bytes (assuming 1053) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atac-driver/statsGenerator/statsGenerator atac-driver/statsGenerator/statsGenerator.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/uniqueFilter/uniqueFilter.o -c atac-driver/uniqueFilter/uniqueFilter.C In file included from /<>/libutil/util++.H:4, from atac-driver/uniqueFilter/uniqueFilter.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/uniqueFilter/uniqueFilter.C:24: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:226:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 226 | fprintf(stderr, "Sorting error -- have negative coverage (axis="uint32FMT" position="uint32FMT")!\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:226:80: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 226 | fprintf(stderr, "Sorting error -- have negative coverage (axis="uint32FMT" position="uint32FMT")!\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:236:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 236 | fprintf(stderr, "offsetsToCoverage()-- Found "uint64FMT" bases at coverage "uint32FMT" or greater.\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:236:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 236 | fprintf(stderr, "offsetsToCoverage()-- Found "uint64FMT" bases at coverage "uint32FMT" or greater.\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:370:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 370 | fprintf(stderr, "Got fwd intersection on i="uint32FMT" matchNumber="uint32FMT"\n", i, matchNumber); | ^ atac-driver/uniqueFilter/uniqueFilter.C:370:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 370 | fprintf(stderr, "Got fwd intersection on i="uint32FMT" matchNumber="uint32FMT"\n", i, matchNumber); | ^ atac-driver/uniqueFilter/uniqueFilter.C:371:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 371 | fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:371:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 371 | fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:371:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 371 | fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:371:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 371 | fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:374:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 374 | fprintf(stdout, "--key1 beg="uint32FMT" end="uint32FMT"\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:374:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 374 | fprintf(stdout, "--key1 beg="uint32FMT" end="uint32FMT"\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:379:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 379 | fprintf(stderr, "Got rev intersection on i="uint32FMT" matchNumber="uint32FMT"\n", i, matchNumber); | ^ atac-driver/uniqueFilter/uniqueFilter.C:379:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 379 | fprintf(stderr, "Got rev intersection on i="uint32FMT" matchNumber="uint32FMT"\n", i, matchNumber); | ^ atac-driver/uniqueFilter/uniqueFilter.C:380:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 380 | fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:380:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 380 | fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:380:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 380 | fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:380:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 380 | fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:383:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 383 | fprintf(stdout, "--key2 beg="uint32FMT" end="uint32FMT"\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:383:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 383 | fprintf(stdout, "--key2 beg="uint32FMT" end="uint32FMT"\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:418:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 418 | #define D08D2 uint32FMTW(8)" "uint32FMTW(8) | ^ atac-driver/uniqueFilter/uniqueFilter.C:419:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 419 | #define KEY1THING "key1 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:419:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 419 | #define KEY1THING "key1 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:419:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 419 | #define KEY1THING "key1 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:419:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 419 | #define KEY1THING "key1 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:419:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 419 | #define KEY1THING "key1 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:420:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 420 | #define KEY2THING "key2 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:420:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 420 | #define KEY2THING "key2 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:420:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 420 | #define KEY2THING "key2 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:420:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 420 | #define KEY2THING "key2 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:420:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 420 | #define KEY2THING "key2 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:818:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 818 | fprintf(stderr, "match "uint32FMT" is outside the extent!\n", i); | ^ atac-driver/uniqueFilter/uniqueFilter.C:828:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 828 | fprintf(stdout, "M %s %s."uint32FMT" . %s "uint32FMT" "uint32FMT" 1 %s "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:828:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 828 | fprintf(stdout, "M %s %s."uint32FMT" . %s "uint32FMT" "uint32FMT" 1 %s "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:828:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 828 | fprintf(stdout, "M %s %s."uint32FMT" . %s "uint32FMT" "uint32FMT" 1 %s "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:828:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 828 | fprintf(stdout, "M %s %s."uint32FMT" . %s "uint32FMT" "uint32FMT" 1 %s "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:828:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 828 | fprintf(stdout, "M %s %s."uint32FMT" . %s "uint32FMT" "uint32FMT" 1 %s "uint32FMT" "uint32FMT" %d\n", | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atac-driver/uniqueFilter/uniqueFilter atac-driver/uniqueFilter/uniqueFilter.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/clumpMaker/clumpMaker.o -c atac-driver/clumpMaker/clumpMaker.C In file included from atac-driver/clumpMaker/clumpMaker.C:4: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15, from /<>/atac-driver/libatac/atac.H:26, from atac-driver/clumpMaker/clumpMaker.C:5: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/clumpMaker/clumpMaker.C:341:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 341 | sprintf(C.matchuid, "clump"int32FMTW(06), cc); | ^ atac-driver/clumpMaker/clumpMaker.C:377:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 377 | sprintf(hits[mm].match.parentuid, "clump"int32FMTW(06), cc); | ^ atac-driver/clumpMaker/clumpMaker.C: In function ‘int main(int, char**)’: atac-driver/clumpMaker/clumpMaker.C:220:12: warning: variable ‘isSorted’ set but not used [-Wunused-but-set-variable] 220 | bool isSorted = false; | ^~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atac-driver/clumpMaker/clumpMaker atac-driver/clumpMaker/clumpMaker.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_dpaligner.o -c atac-driver/chainer/localalign/GF_ALN_dpaligner.C g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_local.o -c atac-driver/chainer/localalign/GF_ALN_local.C atac-driver/chainer/localalign/GF_ALN_local.C: In function ‘void Complement(char*, int)’: atac-driver/chainer/localalign/GF_ALN_local.C:146:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 146 | register char *s, *t; | ^ atac-driver/chainer/localalign/GF_ALN_local.C:146:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 146 | register char *s, *t; | ^ atac-driver/chainer/localalign/GF_ALN_local.C: In function ‘void Align_Recursion(const char*, int, const char*, int, const Trapezoid*, int, int, int, double, int)’: atac-driver/chainer/localalign/GF_ALN_local.C:872:15: warning: variable ‘indel’ set but not used [-Wunused-but-set-variable] 872 | int j, mid, indel; | ^~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_overlap.o -c atac-driver/chainer/localalign/GF_ALN_overlap.C atac-driver/chainer/localalign/GF_ALN_overlap.C: In function ‘void AVLinit()’: atac-driver/chainer/localalign/GF_ALN_overlap.C:93:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 93 | OutOfMemory("Candidate list"); | ^~~~~~~~~~~~~~~~ atac-driver/chainer/localalign/GF_ALN_overlap.C: In function ‘AVLnode* NEW(AVLnode*, Candidate*, AVLnode*)’: atac-driver/chainer/localalign/GF_ALN_overlap.C:125:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 125 | OutOfMemory("Candidate list"); | ^~~~~~~~~~~~~~~~ atac-driver/chainer/localalign/GF_ALN_overlap.C: In function ‘Local_Overlap* Find_Local_Overlap(int, int, int, int, Local_Segment*, int, int, double)’: atac-driver/chainer/localalign/GF_ALN_overlap.C:396:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 396 | OutOfMemory("Overlap Trace Array"); | ^~~~~~~~~~~~~~~~~~~~~ atac-driver/chainer/localalign/GF_ALN_overlap.C:662:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 662 | OutOfMemory("Overlap descriptor"); | ^~~~~~~~~~~~~~~~~~~~ atac-driver/chainer/localalign/GF_ALN_overlap.C:614:20: warning: variable ‘beg’ set but not used [-Wunused-but-set-variable] 614 | int best, end, beg; | ^~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_loverlapper.o -c atac-driver/chainer/localalign/GF_ALN_loverlapper.C g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_pieceOlap.o -c atac-driver/chainer/localalign/GF_ALN_pieceOlap.C g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -I/usr/include/python3.12 -o atac-driver/chainer/localalign/localAlignerInterfacemodule.o -c atac-driver/chainer/localalign/localAlignerInterfacemodule.C atac-driver/chainer/localalign/localAlignerInterfacemodule.C: In function ‘PyObject* spam_syntenicSegments(PyObject*, PyObject*)’: atac-driver/chainer/localalign/localAlignerInterfacemodule.C:176:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 176 | char *Aseq = "undefined"; | ^~~~~~~~~~~ atac-driver/chainer/localalign/localAlignerInterfacemodule.C:179:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 179 | char *Bseq = "undefined"; | ^~~~~~~~~~~ rm -f atac-driver/chainer/localAlignerInterfacemodule.so && g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -shared -o atac-driver/chainer/localAlignerInterfacemodule.so atac-driver/chainer/localalign/GF_ALN_dpaligner.o atac-driver/chainer/localalign/GF_ALN_local.o atac-driver/chainer/localalign/GF_ALN_overlap.o atac-driver/chainer/localalign/GF_ALN_loverlapper.o atac-driver/chainer/localalign/GF_ALN_pieceOlap.o atac-driver/chainer/localalign/localAlignerInterfacemodule.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/halign/halign.o -c atac-driver/chainer/halign/halign.C atac-driver/chainer/halign/halign.C: In function ‘int diff(const char*, const char*, int, int, int*, int*, int*, int*, int, int, int, int, int, int, int, int, int, EditScript**, EditScript**)’: atac-driver/chainer/halign/halign.C:295:9: warning: variable ‘cost1’ set but not used [-Wunused-but-set-variable] 295 | int cost1, cost2; | ^~~~~ atac-driver/chainer/halign/halign.C:295:16: warning: variable ‘cost2’ set but not used [-Wunused-but-set-variable] 295 | int cost1, cost2; | ^~~~~ atac-driver/chainer/halign/halign.C:345:9: warning: variable ‘cost1’ set but not used [-Wunused-but-set-variable] 345 | int cost1, cost2; | ^~~~~ atac-driver/chainer/halign/halign.C:345:16: warning: variable ‘cost2’ set but not used [-Wunused-but-set-variable] 345 | int cost1, cost2; | ^~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -I/usr/include/python3.12 -o atac-driver/chainer/halign/halignmodule.o -c atac-driver/chainer/halign/halignmodule.C rm -f atac-driver/chainer/halignmodule.so && g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -shared -o atac-driver/chainer/halignmodule.so atac-driver/chainer/halign/halign.o atac-driver/chainer/halign/halignmodule.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chimera/happy-clones-span-clumps.o -c atac-driver/chimera/happy-clones-span-clumps.C In file included from /<>/libutil/util++.H:4, from atac-driver/chimera/happy-clones-span-clumps.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ atac-driver/chimera/happy-clones-span-clumps.C:202:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 202 | fprintf(stderr, "ERROR: increase scaffoldsMax "uint32FMT"\n", scaffoldid); | ^ atac-driver/chimera/happy-clones-span-clumps.C:229:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 229 | fprintf(stderr, "Deleted "uint32FMT" scaffolds with less than 2 clumps.\n", deleted); | ^ atac-driver/chimera/happy-clones-span-clumps.C:230:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 230 | fprintf(stderr, "Remain "uint32FMT" scaffolds with more than 2 clumps.\n", remain); | ^ atac-driver/chimera/happy-clones-span-clumps.C:248:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 248 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" begin "uint32FMT" end "uint32FMT"\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:248:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 248 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" begin "uint32FMT" end "uint32FMT"\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:248:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 248 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" begin "uint32FMT" end "uint32FMT"\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:248:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 248 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" begin "uint32FMT" end "uint32FMT"\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:255:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 255 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and clump "uint32FMT" OVERLAP\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:255:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 255 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and clump "uint32FMT" OVERLAP\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:255:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 255 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and clump "uint32FMT" OVERLAP\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:263:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 263 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and "uint32FMT" confirmed by "uint32FMT" clones.\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:263:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 263 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and "uint32FMT" confirmed by "uint32FMT" clones.\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:263:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 263 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and "uint32FMT" confirmed by "uint32FMT" clones.\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:263:85: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 263 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and "uint32FMT" confirmed by "uint32FMT" clones.\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:449:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 449 | fprintf(stdout, "%s spans clump in scaffold %s,"uint32FMT"\n", ina, A[7], scfa); | ^ atac-driver/chimera/happy-clones-span-clumps.C:453:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 453 | fprintf(stdout, "%s spans clump in scaffold %s,"uint32FMT" \n", inb, B[7], scfb); | ^ atac-driver/chimera/happy-clones-span-clumps.C:464:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 464 | fprintf(stdout, "scaffold %s,"uint32FMT" clump "uint32FMT" "uint32FMT" confirmed by %s\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:464:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 464 | fprintf(stdout, "scaffold %s,"uint32FMT" clump "uint32FMT" "uint32FMT" confirmed by %s\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:464:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 464 | fprintf(stdout, "scaffold %s,"uint32FMT" clump "uint32FMT" "uint32FMT" confirmed by %s\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C: In function ‘int main(int, char**)’: atac-driver/chimera/happy-clones-span-clumps.C:393:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 393 | char *uidmapName = "/project/huref6/assembly/fasta/HUREF6A.info"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C: In function ‘atacClumpCoordTree* buildCoordTree(char*)’: atac-driver/chimera/happy-clones-span-clumps.C:313:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 313 | fgets(inl, 1024, inf); | ~~~~~^~~~~~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C:340:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 340 | fgets(inl, 1024, inf); | ~~~~~^~~~~~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C: In function ‘int main(int, char**)’: atac-driver/chimera/happy-clones-span-clumps.C:402:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 402 | fgets(L, 1024, F); | ~~~~~^~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C:409:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 409 | fgets(L, 1024, F); | ~~~~~^~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C:426:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 426 | fgets(ina, 1024, inf); chomp(ina); | ~~~~~^~~~~~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C:427:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 427 | fgets(inb, 1024, inf); chomp(inb); | ~~~~~^~~~~~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C:473:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 473 | fgets(ina, 1024, inf); chomp(ina); | ~~~~~^~~~~~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C:474:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 474 | fgets(inb, 1024, inf); chomp(inb); | ~~~~~^~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atac-driver/chimera/happy-clones-span-clumps atac-driver/chimera/happy-clones-span-clumps.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/seatac.o -c seatac/seatac.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/seatac.C:4: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seatac/seatac.H:25: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", | ^ seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/seatac.C:201:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | "O:"uint32FMTW(7)" S:"uint32FMTW(7)" I:"uint32FMTW(7)" T:"uint32FMTW(7)" (%5.1f%%; %8.3f/sec) Finish in %5.2f seconds.\r", | ^ seatac/seatac.C:201:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | "O:"uint32FMTW(7)" S:"uint32FMTW(7)" I:"uint32FMTW(7)" T:"uint32FMTW(7)" (%5.1f%%; %8.3f/sec) Finish in %5.2f seconds.\r", | ^ seatac/seatac.C:201:52: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | "O:"uint32FMTW(7)" S:"uint32FMTW(7)" I:"uint32FMTW(7)" T:"uint32FMTW(7)" (%5.1f%%; %8.3f/sec) Finish in %5.2f seconds.\r", | ^ seatac/seatac.C:201:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | "O:"uint32FMTW(7)" S:"uint32FMTW(7)" I:"uint32FMTW(7)" T:"uint32FMTW(7)" (%5.1f%%; %8.3f/sec) Finish in %5.2f seconds.\r", | ^ seatac/seatac.C:239:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 239 | fprintf(stderr, "\n"uint32FMTW(7)" sequences (%5.1f%%; %8.3f/sec) %5.2f seconds.\n", | ^ seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 146 | } catch (std::bad_alloc) { | ^~~~~~~~~ seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 82 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/configuration.o -c seatac/configuration.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/configuration.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seatac/seatac.H:25: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", | ^ seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/configuration.C:259:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 259 | fprintf(out, "/seatacNumSearchThreads="uint32FMT"\n", _numSearchThreads); | ^ seatac/configuration.C:260:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 260 | fprintf(out, "/seatacLoaderHighWaterMark="uint32FMT"\n", _loaderHighWaterMark); | ^ seatac/configuration.C:264:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 264 | fprintf(out, "/seatacWriterHighWaterMark="uint32FMT"\n", _writerHighWaterMark); | ^ seatac/configuration.C:267:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 267 | fprintf(out, "/seatacMaxDiagonal="uint32FMT"\n", _maxDiagonal); | ^ seatac/configuration.C:268:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 268 | fprintf(out, "/seatacMaxGap="uint32FMT"\n", _maxGap); | ^ seatac/configuration.C:269:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 269 | fprintf(out, "/seatacQsOverlap="uint32FMT"\n", _qsOverlap); | ^ seatac/configuration.C:270:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 270 | fprintf(out, "/seatacDsOverlap="uint32FMT"\n", _dsOverlap); | ^ seatac/configuration.C:271:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 271 | fprintf(out, "/seatacMinLength="uint32FMT"\n", _minLength + _merSize); | ^ seatac/configuration.C:272:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 272 | fprintf(out, "/seatacMerSize="uint32FMT"\n", _merSize); | ^ seatac/configuration.C:273:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 273 | fprintf(out, "/seatacMerSkip="uint32FMT"\n", _merSkip); | ^ seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 146 | } catch (std::bad_alloc) { | ^~~~~~~~~ seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 82 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/encodedQuery.o -c seatac/encodedQuery.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/encodedQuery.C:3: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seatac/seatac.H:25: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", | ^ seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 146 | } catch (std::bad_alloc) { | ^~~~~~~~~ seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 82 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/hitMatrix.o -c seatac/hitMatrix.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/hitMatrix.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seatac/seatac.H:25: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", | ^ seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 146 | } catch (std::bad_alloc) { | ^~~~~~~~~ seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 82 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/thr-search.o -c seatac/thr-search.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/thr-search.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seatac/seatac.H:25: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", | ^ seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/thr-search.C:3:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 3 | char const *srchGbye = "[%ld] computed: "uint64FMTW(8)" blocked: "uint64FMTW(4)"/"uint64FMTW(4)" encodeTime: %7.2f searchTime: %7.2f processTime: %7.2f\n"; | ^ seatac/thr-search.C:3:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 3 | char const *srchGbye = "[%ld] computed: "uint64FMTW(8)" blocked: "uint64FMTW(4)"/"uint64FMTW(4)" encodeTime: %7.2f searchTime: %7.2f processTime: %7.2f\n"; | ^ seatac/thr-search.C:3:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 3 | char const *srchGbye = "[%ld] computed: "uint64FMTW(8)" blocked: "uint64FMTW(4)"/"uint64FMTW(4)" encodeTime: %7.2f searchTime: %7.2f processTime: %7.2f\n"; | ^ seatac/thr-search.C:130:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, uint64FMT" Blocked by output (idx = "uint32FMT", outputPos = "uint32FMT").\n", (long)U, idx, outputPos); | ^ seatac/thr-search.C:130:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, uint64FMT" Blocked by output (idx = "uint32FMT", outputPos = "uint32FMT").\n", (long)U, idx, outputPos); | ^ seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 146 | } catch (std::bad_alloc) { | ^~~~~~~~~ seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 82 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/thr-loader.o -c seatac/thr-loader.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/thr-loader.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seatac/seatac.H:25: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", | ^ seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 146 | } catch (std::bad_alloc) { | ^~~~~~~~~ seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 82 | } catch (std::bad_alloc) { | ^~~~~~~~~ seatac/thr-loader.C: In function ‘void* loaderThread(void*)’: seatac/thr-loader.C:68:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 68 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/thr-deadlock.o -c seatac/thr-deadlock.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/thr-deadlock.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seatac/seatac.H:25: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", | ^ seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 146 | } catch (std::bad_alloc) { | ^~~~~~~~~ seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 82 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/hitMatrix-sort.o -c seatac/hitMatrix-sort.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seatac/hitMatrix.H:8, from seatac/hitMatrix-sort.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seatac/hitMatrix.H:9: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seatac/hitMatrix.H:10: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", | ^ seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 146 | } catch (std::bad_alloc) { | ^~~~~~~~~ seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 82 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/existDB-create-from-fasta.o -c /<>/libkmer/existDB-create-from-fasta.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/existDB.H:7, from /<>/libkmer/existDB-create-from-fasta.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/existDB-create-from-fasta.C:136:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | fprintf(stderr, "existDB::createFromFastA()-- hashTable is "uint64FMT"MB\n", _hashTableWords >> 17); | ^ /<>/libkmer/existDB-create-from-fasta.C:137:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 137 | fprintf(stderr, "existDB::createFromFastA()-- buckets is "uint64FMT"MB\n", _bucketsWords >> 17); | ^ /<>/libkmer/existDB-create-from-fasta.C:139:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 139 | fprintf(stderr, "existDB::createFromFastA()-- counts is "uint64FMT"MB\n", _countsWords >> 17); | ^ /<>/libkmer/existDB-create-from-fasta.C:239:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 239 | fprintf(stderr, "Compressed from "uint64FMT" to "uint64FMT" ("uint64FMT" bits)\n", | ^ /<>/libkmer/existDB-create-from-fasta.C:239:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 239 | fprintf(stderr, "Compressed from "uint64FMT" to "uint64FMT" ("uint64FMT" bits)\n", | ^ /<>/libkmer/existDB-create-from-fasta.C:239:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 239 | fprintf(stderr, "Compressed from "uint64FMT" to "uint64FMT" ("uint64FMT" bits)\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/existDB-create-from-meryl.o -c /<>/libkmer/existDB-create-from-meryl.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/existDB.H:7, from /<>/libkmer/existDB-create-from-meryl.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/existDB-create-from-meryl.C:27:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 27 | fprintf(stderr, "createFromMeryl()-- ERROR: requested merSize ("uint32FMT") is different than merSize in meryl database ("uint32FMT").\n", | ^ /<>/libkmer/existDB-create-from-meryl.C:27:78: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 27 | fprintf(stderr, "createFromMeryl()-- ERROR: requested merSize ("uint32FMT") is different than merSize in meryl database ("uint32FMT").\n", | ^ /<>/libkmer/existDB-create-from-meryl.C:54:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 54 | fprintf(stderr, "createFromMeryl()-- tableSizeInEntries "uint64FMT"\n", tableSizeInEntries); | ^ /<>/libkmer/existDB-create-from-meryl.C:55:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | fprintf(stderr, "createFromMeryl()-- count range "uint32FMT"-"uint32FMT"\n", lo, hi); | ^ /<>/libkmer/existDB-create-from-meryl.C:55:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | fprintf(stderr, "createFromMeryl()-- count range "uint32FMT"-"uint32FMT"\n", lo, hi); | ^ /<>/libkmer/existDB-create-from-meryl.C:104:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 104 | fprintf(stderr, "createFromMeryl()-- numberOfMers "uint64FMT"\n", numberOfMers); | ^ /<>/libkmer/existDB-create-from-meryl.C:116:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 116 | fprintf(stderr, "existDB::createFromMeryl()-- Found "uint64FMT" mers between count of "uint32FMT" and "uint32FMT"\n", | ^ /<>/libkmer/existDB-create-from-meryl.C:116:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 116 | fprintf(stderr, "existDB::createFromMeryl()-- Found "uint64FMT" mers between count of "uint32FMT" and "uint32FMT"\n", | ^ /<>/libkmer/existDB-create-from-meryl.C:116:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 116 | fprintf(stderr, "existDB::createFromMeryl()-- Found "uint64FMT" mers between count of "uint32FMT" and "uint32FMT"\n", | ^ /<>/libkmer/existDB-create-from-meryl.C:135:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 135 | fprintf(stderr, "existDB::createFromMeryl()-- hashTable is "uint64FMT"MB\n", _hashTableWords >> 17); | ^ /<>/libkmer/existDB-create-from-meryl.C:136:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | fprintf(stderr, "existDB::createFromMeryl()-- buckets is "uint64FMT"MB\n", _bucketsWords >> 17); | ^ /<>/libkmer/existDB-create-from-meryl.C:138:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 138 | fprintf(stderr, "existDB::createFromMeryl()-- counts is "uint64FMT"MB\n", _countsWords >> 17); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/existDB-create-from-sequence.o -c /<>/libkmer/existDB-create-from-sequence.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/existDB.H:7, from /<>/libkmer/existDB-create-from-sequence.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/existDB-create-from-sequence.C:136:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | fprintf(stderr, "existDB::createFromSequence()-- hashTable is "uint64FMT"MB\n", _hashTableWords >> 17); | ^ /<>/libkmer/existDB-create-from-sequence.C:137:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 137 | fprintf(stderr, "existDB::createFromSequence()-- buckets is "uint64FMT"MB\n", _bucketsWords >> 17); | ^ /<>/libkmer/existDB-create-from-sequence.C:139:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 139 | fprintf(stderr, "existDB::createFromSequence()-- counts is "uint64FMT"MB\n", _countsWords >> 17); | ^ /<>/libkmer/existDB-create-from-sequence.C:239:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 239 | fprintf(stderr, "Compressed from "uint64FMT" to "uint64FMT" ("uint64FMT" bits)\n", | ^ /<>/libkmer/existDB-create-from-sequence.C:239:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 239 | fprintf(stderr, "Compressed from "uint64FMT" to "uint64FMT" ("uint64FMT" bits)\n", | ^ /<>/libkmer/existDB-create-from-sequence.C:239:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 239 | fprintf(stderr, "Compressed from "uint64FMT" to "uint64FMT" ("uint64FMT" bits)\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/existDB-state.o -c /<>/libkmer/existDB-state.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/existDB.H:7, from /<>/libkmer/existDB-state.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/existDB-state.C:169:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 169 | fprintf(stream, "merSizeInBases: "uint32FMT"\n", _merSizeInBases); | ^ /<>/libkmer/existDB-state.C:170:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 170 | fprintf(stream, "tableBits "uint32FMT"\n", 2 * _merSizeInBases - _shift1); | ^ /<>/libkmer/existDB-state.C:172:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 172 | fprintf(stream, "_hashTableWords "uint64FMT" ("uint64FMT" KB)\n", _hashTableWords, _hashTableWords >> 7); | ^ /<>/libkmer/existDB-state.C:172:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 172 | fprintf(stream, "_hashTableWords "uint64FMT" ("uint64FMT" KB)\n", _hashTableWords, _hashTableWords >> 7); | ^ /<>/libkmer/existDB-state.C:173:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 173 | fprintf(stream, "_bucketsWords "uint64FMT" ("uint64FMT" KB)\n", _bucketsWords, _bucketsWords >> 7); | ^ /<>/libkmer/existDB-state.C:173:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 173 | fprintf(stream, "_bucketsWords "uint64FMT" ("uint64FMT" KB)\n", _bucketsWords, _bucketsWords >> 7); | ^ /<>/libkmer/existDB-state.C:174:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 174 | fprintf(stream, "_countsWords "uint64FMT" ("uint64FMT" KB)\n", _countsWords, _countsWords >> 7); | ^ /<>/libkmer/existDB-state.C:174:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 174 | fprintf(stream, "_countsWords "uint64FMT" ("uint64FMT" KB)\n", _countsWords, _countsWords >> 7); | ^ /<>/libkmer/existDB-state.C:176:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 176 | fprintf(stream, "_shift1: "uint32FMT"\n", _shift1); | ^ /<>/libkmer/existDB-state.C:177:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 177 | fprintf(stream, "_shift2 "uint32FMT"\n", _shift2); | ^ /<>/libkmer/existDB-state.C:178:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 178 | fprintf(stream, "_mask1 "uint64HEX"\n", _mask1); | ^ /<>/libkmer/existDB-state.C:179:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 179 | fprintf(stream, "_mask2 "uint64HEX"\n", _mask2); | ^ /<>/libkmer/existDB-state.C:183:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 183 | fprintf(stream, "_hshWidth "uint32FMT"\n", _hshWidth); | ^ /<>/libkmer/existDB-state.C:191:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 191 | fprintf(stream, "_chkWidth "uint32FMT"\n", _chkWidth); | ^ /<>/libkmer/existDB-state.C:199:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 199 | fprintf(stream, "_cntWidth "uint32FMT"\n", _cntWidth); | ^ /<>/libkmer/existDB-state.C: In member function ‘bool existDB::loadState(const char*, bool, bool)’: /<>/libkmer/existDB-state.C:80:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 80 | fread(cigam, sizeof(char), 16, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:124:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 124 | fread(&_merSizeInBases, sizeof(uint32), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:125:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 125 | fread(&_shift1, sizeof(uint32), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:126:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | fread(&_shift2, sizeof(uint32), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:127:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 127 | fread(&_mask1, sizeof(uint64), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:128:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 128 | fread(&_mask2, sizeof(uint64), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:129:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 129 | fread(&_hshWidth, sizeof(uint32), 1, F); // only valid if _compressedHash | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:130:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 130 | fread(&_chkWidth, sizeof(uint32), 1, F); // only valid if _compressedBucket | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:131:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 131 | fread(&_cntWidth, sizeof(uint32), 1, F); // only valid if _compressedCounts | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:133:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 133 | fread(&_hashTableWords, sizeof(uint64), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:134:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 134 | fread(&_bucketsWords, sizeof(uint64), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:135:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 135 | fread(&_countsWords, sizeof(uint64), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:148:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 148 | fread(_hashTable, sizeof(uint64), _hashTableWords, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:149:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 149 | fread(_buckets, sizeof(uint64), _bucketsWords, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:152:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 152 | fread(_counts, sizeof(uint64), _countsWords, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C: In member function ‘existDB::saveState(char const*)’: /<>/libkmer/existDB-state.C:24:10: warning: ‘strncpy’ output truncated before terminating nul copying 16 bytes from a string of the same length [-Wstringop-truncation] 24 | strncpy(cigam, magic, 16); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/existDB.o -c /<>/libkmer/existDB.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/existDB.H:7, from /<>/libkmer/existDB.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/existDB.C:44:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 44 | fprintf(stderr, "existDB::existDB()-- Got "uint32FMT", expected "uint32FMT"\n", _merSizeInBases, merSize); | ^ /<>/libkmer/existDB.C:44:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 44 | fprintf(stderr, "existDB::existDB()-- Got "uint32FMT", expected "uint32FMT"\n", _merSizeInBases, merSize); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/positionDB-access.o -c /<>/libkmer/positionDB-access.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/positionDB-access.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/libkmer/positionDB-access.C:2: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ /<>/libkmer/positionDB-access.C:22:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 22 | fprintf(stderr, "positionDB::get()-- Can't allocate space for more positions, requested "uint64FMT" uint64's.\n", posnMax); | ^ /<>/libkmer/positionDB-access.C:215:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 215 | fprintf(stderr, "positionDB::filter()-- Filtering out kmers less than "uint64FMT" and more than "uint64FMT"\n", lo, hi); | ^ /<>/libkmer/positionDB-access.C:215:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 215 | fprintf(stderr, "positionDB::filter()-- Filtering out kmers less than "uint64FMT" and more than "uint64FMT"\n", lo, hi); | ^ /<>/libkmer/positionDB-access.C:339:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 339 | fprintf(stderr, "positionDB::filter()-- Filtered "uint64FMT" kmers less than "uint64FMT"\n", loCount, lo); | ^ /<>/libkmer/positionDB-access.C:339:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 339 | fprintf(stderr, "positionDB::filter()-- Filtered "uint64FMT" kmers less than "uint64FMT"\n", loCount, lo); | ^ /<>/libkmer/positionDB-access.C:340:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 340 | fprintf(stderr, "positionDB::filter()-- Filtered "uint64FMT" kmers more than "uint64FMT"\n", hiCount, hi); | ^ /<>/libkmer/positionDB-access.C:340:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 340 | fprintf(stderr, "positionDB::filter()-- Filtered "uint64FMT" kmers more than "uint64FMT"\n", hiCount, hi); | ^ /<>/libkmer/positionDB-access.C:341:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 341 | fprintf(stderr, "positionDB::filter()-- Saved "uint64FMT" kmers with acceptable count\n", okCount); | ^ /<>/libkmer/positionDB-access.C: In member function ‘void positionDB::filter(uint64, uint64)’: /<>/libkmer/positionDB-access.C:204:11: warning: unused variable ‘vv’ [-Wunused-variable] 204 | uint64 vv; | ^~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/positionDB-dump.o -c /<>/libkmer/positionDB-dump.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/positionDB.H:5, from /<>/libkmer/positionDB-dump.C:4: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ /<>/libkmer/positionDB-dump.C:25:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 25 | fprintf(F, "B "uint64FMT" "uint64FMT"-"uint64FMT"\n", h, st, ed); | ^ /<>/libkmer/positionDB-dump.C:25:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 25 | fprintf(F, "B "uint64FMT" "uint64FMT"-"uint64FMT"\n", h, st, ed); | ^ /<>/libkmer/positionDB-dump.C:25:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 25 | fprintf(F, "B "uint64FMT" "uint64FMT"-"uint64FMT"\n", h, st, ed); | ^ /<>/libkmer/positionDB-dump.C:32:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(F, "%c chk="uint64HEX" pos="uint64FMT" siz="uint64FMT, | ^ /<>/libkmer/positionDB-dump.C:32:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(F, "%c chk="uint64HEX" pos="uint64FMT" siz="uint64FMT, | ^ /<>/libkmer/positionDB-dump.C:32:52: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(F, "%c chk="uint64HEX" pos="uint64FMT" siz="uint64FMT, | ^ /<>/libkmer/positionDB-dump.C:40:22: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 40 | fprintf(F, " "uint64FMT, getDecodedValue(_positions, pos, _posnWidth)); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/positionDB-file.o -c /<>/libkmer/positionDB-file.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/positionDB.H:5, from /<>/libkmer/positionDB-file.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ /<>/libkmer/positionDB-file.C:197:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 197 | fprintf(stream, "merSizeInBases: "uint32FMT"\n", _merSizeInBases); | ^ /<>/libkmer/positionDB-file.C:198:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 198 | fprintf(stream, "merSkipInBases: "uint32FMT"\n", _merSkipInBases); | ^ /<>/libkmer/positionDB-file.C:199:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 199 | fprintf(stream, "tableSizeInBits: "uint32FMT"\n", _tableSizeInBits); | ^ /<>/libkmer/positionDB-file.C:200:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 200 | fprintf(stream, "tableSizeInEntries: "uint64FMT"\n", _tableSizeInEntries); | ^ /<>/libkmer/positionDB-file.C:201:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | fprintf(stream, "hashWidth: "uint32FMT"\n", _hashWidth); | ^ /<>/libkmer/positionDB-file.C:202:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 202 | fprintf(stream, "chckWidth: "uint32FMT"\n", _chckWidth); | ^ /<>/libkmer/positionDB-file.C:203:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 203 | fprintf(stream, "posnWidth: "uint32FMT"\n", _posnWidth); | ^ /<>/libkmer/positionDB-file.C:204:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 204 | fprintf(stream, "numberOfMers: "uint64FMT"\n", _numberOfMers); | ^ /<>/libkmer/positionDB-file.C:205:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 205 | fprintf(stream, "numberOfPositions: "uint64FMT"\n", _numberOfPositions); | ^ /<>/libkmer/positionDB-file.C:206:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 206 | fprintf(stream, "numberOfDistinct: "uint64FMT"\n", _numberOfDistinct); | ^ /<>/libkmer/positionDB-file.C:207:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 207 | fprintf(stream, "numberOfUnique: "uint64FMT"\n", _numberOfUnique); | ^ /<>/libkmer/positionDB-file.C:208:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 208 | fprintf(stream, "numberOfEntries: "uint64FMT"\n", _numberOfEntries); | ^ /<>/libkmer/positionDB-file.C:209:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 209 | fprintf(stream, "maximumEntries: "uint64FMT"\n", _maximumEntries); | ^ /<>/libkmer/positionDB-file.C: In member function ‘void positionDB::saveState(const char*)’: /<>/libkmer/positionDB-file.C:63:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 63 | _hashTable_FW = (uint32 *)((_hashTable_FW) ? uint32ONE : uint32ZERO); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/positionDB-file.C:37:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 37 | write(F, magic, sizeof(char) * 16); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/positionDB-file.C:39:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 39 | write(F, faild, sizeof(char) * 16); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/positionDB-file.C:95:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 95 | write(F, magic, sizeof(char) * 16); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/positionDB-mismatch.o -c /<>/libkmer/positionDB-mismatch.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/positionDB.H:5, from /<>/libkmer/positionDB-mismatch.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ /<>/libkmer/positionDB-mismatch.C:324:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 324 | fprintf(stderr, "positionDB::getUpToNMismatches()-- Can't allocate space for initial positions, requested "uint64FMT" uint64's.\n", posnMax); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/positionDB-sort.o -c /<>/libkmer/positionDB-sort.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/positionDB.H:5, from /<>/libkmer/positionDB-sort.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ /<>/libkmer/positionDB-sort.C:37:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 37 | fprintf(stdout, "ERROR: Bucket "uint64FMT" starts at "uint64FMT" ends at "uint64FMT"?\n", b, st, ed); | ^ /<>/libkmer/positionDB-sort.C:37:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 37 | fprintf(stdout, "ERROR: Bucket "uint64FMT" starts at "uint64FMT" ends at "uint64FMT"?\n", b, st, ed); | ^ /<>/libkmer/positionDB-sort.C:37:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 37 | fprintf(stdout, "ERROR: Bucket "uint64FMT" starts at "uint64FMT" ends at "uint64FMT"?\n", b, st, ed); | ^ /<>/libkmer/positionDB-sort.C:78:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 78 | fprintf(stdout, "ERROR: unset posn bucket="uint64FMT" t="int64FMT" le="uint32FMT"\n", b, t, le); | ^ /<>/libkmer/positionDB-sort.C:78:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 78 | fprintf(stdout, "ERROR: unset posn bucket="uint64FMT" t="int64FMT" le="uint32FMT"\n", b, t, le); | ^ /<>/libkmer/positionDB-sort.C:78:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 78 | fprintf(stdout, "ERROR: unset posn bucket="uint64FMT" t="int64FMT" le="uint32FMT"\n", b, t, le); | ^ /<>/libkmer/positionDB-sort.C:86:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 86 | fprintf(stdout, uint32FMTW(4)"] chck="uint64HEX" posn="uint64FMT"\n", t, _sortedChck[t], _sortedPosn[t]); | ^ /<>/libkmer/positionDB-sort.C:86:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 86 | fprintf(stdout, uint32FMTW(4)"] chck="uint64HEX" posn="uint64FMT"\n", t, _sortedChck[t], _sortedPosn[t]); | ^ /<>/libkmer/positionDB-sort.C:110:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(stdout, "ERROR: bucket="uint64FMT" t="uint32FMT" le="uint32FMT": "uint64HEX" > "uint64HEX"\n", | ^ /<>/libkmer/positionDB-sort.C:110:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(stdout, "ERROR: bucket="uint64FMT" t="uint32FMT" le="uint32FMT": "uint64HEX" > "uint64HEX"\n", | ^ /<>/libkmer/positionDB-sort.C:110:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(stdout, "ERROR: bucket="uint64FMT" t="uint32FMT" le="uint32FMT": "uint64HEX" > "uint64HEX"\n", | ^ /<>/libkmer/positionDB-sort.C:110:77: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(stdout, "ERROR: bucket="uint64FMT" t="uint32FMT" le="uint32FMT": "uint64HEX" > "uint64HEX"\n", | ^ /<>/libkmer/positionDB-sort.C:110:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(stdout, "ERROR: bucket="uint64FMT" t="uint32FMT" le="uint32FMT": "uint64HEX" > "uint64HEX"\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/positionDB.o -c /<>/libkmer/positionDB.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/positionDB.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/libkmer/positionDB.C:7: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ /<>/libkmer/positionDB.C:46:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 46 | fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer size is wrong (found "uint32FMT", wanted "uint32FMT").\n", | ^ /<>/libkmer/positionDB.C:46:107: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 46 | fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer size is wrong (found "uint32FMT", wanted "uint32FMT").\n", | ^ /<>/libkmer/positionDB.C:52:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 52 | fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer skip is wrong (found "uint32FMT", wanted "uint32FMT").\n", | ^ /<>/libkmer/positionDB.C:52:107: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 52 | fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer skip is wrong (found "uint32FMT", wanted "uint32FMT").\n", | ^ /<>/libkmer/positionDB.C:58:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | fprintf(stderr, "positionDB()-- Tried to read state from '%s', but max number of mismatches is wrong (found "uint32FMT", wanted "uint32FMT").\n", | ^ /<>/libkmer/positionDB.C:58:123: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | fprintf(stderr, "positionDB()-- Tried to read state from '%s', but max number of mismatches is wrong (found "uint32FMT", wanted "uint32FMT").\n", | ^ /<>/libkmer/positionDB.C:127:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, " sm = "uint64FMT"\n", sm); | ^ /<>/libkmer/positionDB.C:128:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, " lg = "uint64FMT"\n", lg); | ^ /<>/libkmer/positionDB.C:129:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, " merSize = "uint32FMT" bits\n", 2 * merSize); | ^ /<>/libkmer/positionDB.C:130:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, " approxMers = "uint64FMT" mers\n", approxMers); | ^ /<>/libkmer/positionDB.C:131:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, " posnWidth = "uint64FMT" bits\n", posnWidth); | ^ /<>/libkmer/positionDB.C:142:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 142 | fprintf(stderr, "potential configurations for approximately "uint64FMT" "uint32FMT"-mers (posnW="uint64FMT").\n", | ^ /<>/libkmer/positionDB.C:142:77: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 142 | fprintf(stderr, "potential configurations for approximately "uint64FMT" "uint32FMT"-mers (posnW="uint64FMT").\n", | ^ /<>/libkmer/positionDB.C:142:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 142 | fprintf(stderr, "potential configurations for approximately "uint64FMT" "uint32FMT"-mers (posnW="uint64FMT").\n", | ^ /<>/libkmer/positionDB.C:200:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 200 | fprintf(stderr, "tblBits="uint64FMTW(2)" shifts="uint32FMTW(02)","uint32FMTW(02)" -- size %8.3fGB -- work %8.3f%s\n", | ^ /<>/libkmer/positionDB.C:200:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 200 | fprintf(stderr, "tblBits="uint64FMTW(2)" shifts="uint32FMTW(02)","uint32FMTW(02)" -- size %8.3fGB -- work %8.3f%s\n", | ^ /<>/libkmer/positionDB.C:200:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 200 | fprintf(stderr, "tblBits="uint64FMTW(2)" shifts="uint32FMTW(02)","uint32FMTW(02)" -- size %8.3fGB -- work %8.3f%s\n", | ^ /<>/libkmer/positionDB.C:217:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 217 | fprintf(stderr, "tblBits="uint32FMT" s1="uint32FMT" s2="uint32FMT" -- merSize="uint32FMT" bits + posnWidth="uint64FMT" bits (est "uint64FMT" mers) FINAL\n", | ^ /<>/libkmer/positionDB.C:217:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 217 | fprintf(stderr, "tblBits="uint32FMT" s1="uint32FMT" s2="uint32FMT" -- merSize="uint32FMT" bits + posnWidth="uint64FMT" bits (est "uint64FMT" mers) FINAL\n", | ^ /<>/libkmer/positionDB.C:217:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 217 | fprintf(stderr, "tblBits="uint32FMT" s1="uint32FMT" s2="uint32FMT" -- merSize="uint32FMT" bits + posnWidth="uint64FMT" bits (est "uint64FMT" mers) FINAL\n", | ^ /<>/libkmer/positionDB.C:217:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 217 | fprintf(stderr, "tblBits="uint32FMT" s1="uint32FMT" s2="uint32FMT" -- merSize="uint32FMT" bits + posnWidth="uint64FMT" bits (est "uint64FMT" mers) FINAL\n", | ^ /<>/libkmer/positionDB.C:217:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 217 | fprintf(stderr, "tblBits="uint32FMT" s1="uint32FMT" s2="uint32FMT" -- merSize="uint32FMT" bits + posnWidth="uint64FMT" bits (est "uint64FMT" mers) FINAL\n", | ^ /<>/libkmer/positionDB.C:217:122: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 217 | fprintf(stderr, "tblBits="uint32FMT" s1="uint32FMT" s2="uint32FMT" -- merSize="uint32FMT" bits + posnWidth="uint64FMT" bits (est "uint64FMT" mers) FINAL\n", | ^ /<>/libkmer/positionDB.C:326:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 326 | fprintf(stderr, "positionDB()-- bktAlloc = new uint64 ["uint64FMT"]\n", _tableSizeInEntries / 2 + 4); | ^ /<>/libkmer/positionDB.C:348:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 348 | fprintf(stderr, " Allocated bucket size counting space with total size "uint64FMT" KB\n", _tableSizeInEntries >> 8); | ^ /<>/libkmer/positionDB.C:392:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 392 | fprintf(stderr, " Found "uint64FMT" mers (max position = "uint64FMT")\n", _numberOfMers, _numberOfPositions); | ^ /<>/libkmer/positionDB.C:392:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 392 | fprintf(stderr, " Found "uint64FMT" mers (max position = "uint64FMT")\n", _numberOfMers, _numberOfPositions); | ^ /<>/libkmer/positionDB.C:430:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 430 | fprintf(stderr, " Allocated "uint64FMT"KB for buckets ("uint64FMT" 64-bit words)\n", bucketsSpace >> 7, bucketsSpace); | ^ /<>/libkmer/positionDB.C:430:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 430 | fprintf(stderr, " Allocated "uint64FMT"KB for buckets ("uint64FMT" 64-bit words)\n", bucketsSpace >> 7, bucketsSpace); | ^ /<>/libkmer/positionDB.C:435:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 435 | fprintf(stderr, "positionDB()-- _countingBuckets = new uint64 ["uint64FMT"]\n", bucketsSpace); | ^ /<>/libkmer/positionDB.C:553:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 553 | fprintf(stderr, " Sorting and repacking buckets ("uint64FMT" buckets).\n", _tableSizeInEntries); | ^ /<>/libkmer/positionDB.C:565:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 565 | " Found "uint64FMTW(12)" total mers\n" | ^ /<>/libkmer/positionDB.C:566:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 566 | " Found "uint64FMTW(12)" distinct mers\n" | ^ /<>/libkmer/positionDB.C:567:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 567 | " Found "uint64FMTW(12)" unique mers\n" | ^ /<>/libkmer/positionDB.C:568:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 568 | " Need "uint64FMT" non-unique position list entries ("uint64FMT" maximum count)\n", | ^ /<>/libkmer/positionDB.C:568:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 568 | " Need "uint64FMT" non-unique position list entries ("uint64FMT" maximum count)\n", | ^ /<>/libkmer/positionDB.C:637:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 637 | fprintf(stderr, " Allocated "uint64FMTW(10)"KB for hash table ("uint64FMT" 64-bit words)\n", hs >> 7, hs); | ^ /<>/libkmer/positionDB.C:637:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 637 | fprintf(stderr, " Allocated "uint64FMTW(10)"KB for hash table ("uint64FMT" 64-bit words)\n", hs >> 7, hs); | ^ /<>/libkmer/positionDB.C:643:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 643 | fprintf(stderr, "positionDB()-- _hashTable_BP = new uint64 ["uint64FMT"]\n", hs); | ^ /<>/libkmer/positionDB.C:662:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 662 | fprintf(stderr, " Reusing bucket space; Have: "uint64FMT" Need: "uint64FMT" (64-bit words)\n", bucketsSpace, bs); | ^ /<>/libkmer/positionDB.C:662:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 662 | fprintf(stderr, " Reusing bucket space; Have: "uint64FMT" Need: "uint64FMT" (64-bit words)\n", bucketsSpace, bs); | ^ /<>/libkmer/positionDB.C:669:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 669 | fprintf(stderr, " Allocated "uint64FMTW(10)"KB for buckets ("uint64FMT" 64-bit words)\n", bs >> 7, bs); | ^ /<>/libkmer/positionDB.C:669:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 669 | fprintf(stderr, " Allocated "uint64FMTW(10)"KB for buckets ("uint64FMT" 64-bit words)\n", bs >> 7, bs); | ^ /<>/libkmer/positionDB.C:674:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 674 | fprintf(stderr, "positionDB()-- _buckets = new uint64 ["uint64FMT"]\n", bs); | ^ /<>/libkmer/positionDB.C:680:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 680 | fprintf(stderr, " Allocated "uint64FMTW(10)"KB for positions ("uint64FMT" 64-bit words)\n", ps >> 7, ps); | ^ /<>/libkmer/positionDB.C:680:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 680 | fprintf(stderr, " Allocated "uint64FMTW(10)"KB for positions ("uint64FMT" 64-bit words)\n", ps >> 7, ps); | ^ /<>/libkmer/positionDB.C:685:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 685 | fprintf(stderr, "positionDB()-- _positions = new uint64 ["uint64FMT"\n", ps); | ^ /<>/libkmer/positionDB.C:695:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 695 | fprintf(stderr, " Transferring to final structure ("uint64FMT" buckets).\n", _tableSizeInEntries); | ^ /<>/libkmer/positionDB.C:878:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 878 | fprintf(stderr, "positionDB()-- ERROR: Got position "uint64FMT", but only "uint64FMT" available!\n", | ^ /<>/libkmer/positionDB.C:878:78: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 878 | fprintf(stderr, "positionDB()-- ERROR: Got position "uint64FMT", but only "uint64FMT" available!\n", | ^ /<>/libkmer/positionDB.C:916:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 916 | fprintf(stderr, " Avail: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (64-bit words)\n", bs, ps); | ^ /<>/libkmer/positionDB.C:916:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 916 | fprintf(stderr, " Avail: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (64-bit words)\n", bs, ps); | ^ /<>/libkmer/positionDB.C:917:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 917 | fprintf(stderr, " Avail: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (entries)\n", _numberOfDistinct, _numberOfEntries); | ^ /<>/libkmer/positionDB.C:917:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 917 | fprintf(stderr, " Avail: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (entries)\n", _numberOfDistinct, _numberOfEntries); | ^ /<>/libkmer/positionDB.C:918:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 918 | fprintf(stderr, " Used: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (64-bit words)\n", currentBbit / 64, currentPbit / 64); | ^ /<>/libkmer/positionDB.C:918:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 918 | fprintf(stderr, " Used: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (64-bit words)\n", currentBbit / 64, currentPbit / 64); | ^ /<>/libkmer/positionDB.C:928:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 928 | fprintf(stderr, " Used: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (entries)\n", _numberOfDistinct, _numberOfEntries); | ^ /<>/libkmer/positionDB.C:928:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 928 | fprintf(stderr, " Used: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (entries)\n", _numberOfDistinct, _numberOfEntries); | ^ /<>/libkmer/positionDB.C:930:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 930 | " Found "uint64FMTW(12)" total mers\n" | ^ /<>/libkmer/positionDB.C:931:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 931 | " Found "uint64FMTW(12)" distinct mers\n" | ^ /<>/libkmer/positionDB.C:932:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 932 | " Found "uint64FMTW(12)" unique mers\n" | ^ /<>/libkmer/positionDB.C:933:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 933 | " Need "uint64FMT" non-unique position list entries ("uint64FMT" maximum count)\n", | ^ /<>/libkmer/positionDB.C:933:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 933 | " Need "uint64FMT" non-unique position list entries ("uint64FMT" maximum count)\n", | ^ /<>/libkmer/positionDB.C:955:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 955 | fprintf(stderr, " Rebuilding the hash table, from "uint32FMT" bits wide to "uint32FMT" bits wide.\n", | ^ /<>/libkmer/positionDB.C:955:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 955 | fprintf(stderr, " Rebuilding the hash table, from "uint32FMT" bits wide to "uint32FMT" bits wide.\n", | ^ /<>/libkmer/positionDB.C:990:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 990 | fprintf(stderr, " Loading "uint64FMT" mercounts.\n", counts->numberOfDistinctMers()); | ^ /<>/libkmer/positionDB.C:1013:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1013 | fprintf(stderr, " Loaded "uint64FMT" mercounts; largest is "uint64FMT".\n", countsLoaded, largestMerylCount); | ^ /<>/libkmer/positionDB.C:1013:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1013 | fprintf(stderr, " Loaded "uint64FMT" mercounts; largest is "uint64FMT".\n", countsLoaded, largestMerylCount); | ^ /<>/libkmer/positionDB.C:1017:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1017 | fprintf(stderr, " Compress sizes from "uint32FMT" bits to "uint32FMT" bits.\n", | ^ /<>/libkmer/positionDB.C:1017:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1017 | fprintf(stderr, " Compress sizes from "uint32FMT" bits to "uint32FMT" bits.\n", | ^ /<>/libkmer/positionDB.C: In member function ‘void positionDB::build(merStream*, existDB*, existDB*, merylStreamReader*, uint32, uint32, bool)’: /<>/libkmer/positionDB.C:324:17: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 324 | } catch (std::bad_alloc) { | ^~~~~~~~~ /<>/libkmer/positionDB.C:433:17: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 433 | } catch (std::bad_alloc) { | ^~~~~~~~~ /<>/libkmer/positionDB.C:641:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 641 | } catch (std::bad_alloc) { | ^~~~~~~~~ /<>/libkmer/positionDB.C:672:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 672 | } catch (std::bad_alloc) { | ^~~~~~~~~ /<>/libkmer/positionDB.C:683:17: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 683 | } catch (std::bad_alloc) { | ^~~~~~~~~ rm -f /<>/libkmer/libkmer.a && ar ruvs /<>/libkmer/libkmer.a /<>/libkmer/existDB-create-from-fasta.o /<>/libkmer/existDB-create-from-meryl.o /<>/libkmer/existDB-create-from-sequence.o /<>/libkmer/existDB-state.o /<>/libkmer/existDB.o /<>/libkmer/positionDB-access.o /<>/libkmer/positionDB-dump.o /<>/libkmer/positionDB-file.o /<>/libkmer/positionDB-mismatch.o /<>/libkmer/positionDB-sort.o /<>/libkmer/positionDB.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/libkmer/libkmer.a a - /<>/libkmer/existDB-create-from-fasta.o a - /<>/libkmer/existDB-create-from-meryl.o a - /<>/libkmer/existDB-create-from-sequence.o a - /<>/libkmer/existDB-state.o a - /<>/libkmer/existDB.o a - /<>/libkmer/positionDB-access.o a - /<>/libkmer/positionDB-dump.o a - /<>/libkmer/positionDB-file.o a - /<>/libkmer/positionDB-mismatch.o a - /<>/libkmer/positionDB-sort.o a - /<>/libkmer/positionDB.o g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libmeryl/libmeryl.o -c /<>/libmeryl/libmeryl.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libmeryl/libmeryl.H:4, from /<>/libmeryl/libmeryl.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libmeryl/libmeryl.C:72:2: warning: #warning not checking pmagic [-Wcpp] 72 | #warning not checking pmagic | ^~~~~~~ /<>/libmeryl/libmeryl.C:134:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 134 | fprintf(stderr, "merylStreamReader()-- ERROR: User requested mersize "uint32FMT" but '%s' is mersize "uint32FMT"\n", | ^ /<>/libmeryl/libmeryl.C:134:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 134 | fprintf(stderr, "merylStreamReader()-- ERROR: User requested mersize "uint32FMT" but '%s' is mersize "uint32FMT"\n", | ^ /<>/libmeryl/libmeryl.C:6:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 6 | static char *ImagicV = "merylStreamIv03\n"; | ^~~~~~~~~~~~~~~~~~~ /<>/libmeryl/libmeryl.C:7:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 7 | static char *ImagicX = "merylStreamIvXX\n"; | ^~~~~~~~~~~~~~~~~~~ /<>/libmeryl/libmeryl.C:8:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 8 | static char *DmagicV = "merylStreamDv03\n"; | ^~~~~~~~~~~~~~~~~~~ /<>/libmeryl/libmeryl.C:9:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 9 | static char *DmagicX = "merylStreamDvXX\n"; | ^~~~~~~~~~~~~~~~~~~ /<>/libmeryl/libmeryl.C:10:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 10 | static char *PmagicV = "merylStreamPv03\n"; | ^~~~~~~~~~~~~~~~~~~ /<>/libmeryl/libmeryl.C:11:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 11 | static char *PmagicX = "merylStreamPvXX\n"; | ^~~~~~~~~~~~~~~~~~~ /<>/libmeryl/libmeryl.C: In constructor ‘merylStreamReader::merylStreamReader(const char*, uint32)’: /<>/libmeryl/libmeryl.C:42:11: warning: variable ‘Pmagic’ set but not used [-Wunused-but-set-variable] 42 | char Pmagic[16] = {0}; | ^~~~~~ /<>/libmeryl/libmeryl.C: In member function ‘void merylStreamWriter::addMer(uint64, uint32, uint64, uint32, uint32, uint32*)’: /<>/libmeryl/libmeryl.C:469:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 469 | (prefix <= _thisMerPre) && (mer < _thisMerMer)) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ rm -f /<>/libmeryl/libmeryl.a && ar ruvs /<>/libmeryl/libmeryl.a /<>/libmeryl/libmeryl.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/libmeryl/libmeryl.a a - /<>/libmeryl/libmeryl.o g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o seatac/seatac seatac/seatac.o seatac/configuration.o seatac/encodedQuery.o seatac/hitMatrix.o seatac/thr-search.o seatac/thr-loader.o seatac/thr-deadlock.o seatac/hitMatrix-sort.o /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/heavychains-driver.o -c seatac/heavychains-driver.C In file included from seatac/heavychains.H:11, from seatac/heavychains-driver.C:24: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ seatac/heavychains.H: In member function ‘double DPTree::matchScore(kd_node, Match&)’: seatac/heavychains.H:374:19: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 374 | if ( (flo.X() && node[flo.intv].lo <= p.xlo || | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/heavychains.o -c seatac/heavychains.C In file included from seatac/heavychains.H:11, from seatac/heavychains.C:22: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ seatac/heavychains.C:96:22: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 96 | fprintf(stderr,"HeavyChains: filtering strands "uint32FMT" "uint32FMT" "uint32FMT"\n", iid1, iid2, Plen); | ^ seatac/heavychains.C:96:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 96 | fprintf(stderr,"HeavyChains: filtering strands "uint32FMT" "uint32FMT" "uint32FMT"\n", iid1, iid2, Plen); | ^ seatac/heavychains.C:96:76: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 96 | fprintf(stderr,"HeavyChains: filtering strands "uint32FMT" "uint32FMT" "uint32FMT"\n", iid1, iid2, Plen); | ^ seatac/heavychains.C:164:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 164 | fprintf(stderr, "heavychains: out "uint32FMTW(8)" %8d %8d -- "uint32FMTW(8)" %8d %8d\n", | ^ seatac/heavychains.C:164:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 164 | fprintf(stderr, "heavychains: out "uint32FMTW(8)" %8d %8d -- "uint32FMTW(8)" %8d %8d\n", | ^ seatac/heavychains.C:169:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 169 | fprintf(outF, "M x H"uint64FMT" . %s:"uint32FMT" %d %d %d %s:"uint32FMT" %d %d %d > /hf=%.1f /hr=%.1f\n", | ^ seatac/heavychains.C:169:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 169 | fprintf(outF, "M x H"uint64FMT" . %s:"uint32FMT" %d %d %d %s:"uint32FMT" %d %d %d > /hf=%.1f /hr=%.1f\n", | ^ seatac/heavychains.C:169:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 169 | fprintf(outF, "M x H"uint64FMT" . %s:"uint32FMT" %d %d %d %s:"uint32FMT" %d %d %d > /hf=%.1f /hr=%.1f\n", | ^ seatac/heavychains.C:186:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 186 | fprintf(stderr, "HeavyChains: finished strands "uint32FMTW(8)" "uint32FMTW(8)" maxlen1=%f maxlen2=%f maxScoreFwd=%f maxScoreRef=%f\n", | ^ seatac/heavychains.C:186:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 186 | fprintf(stderr, "HeavyChains: finished strands "uint32FMTW(8)" "uint32FMTW(8)" maxlen1=%f maxlen2=%f maxScoreFwd=%f maxScoreRef=%f\n", | ^ seatac/heavychains.H: In member function ‘double DPTree::matchScore(kd_node, Match&)’: seatac/heavychains.H:374:19: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 374 | if ( (flo.X() && node[flo.intv].lo <= p.xlo || | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o seatac/heavychains seatac/heavychains-driver.o seatac/heavychains.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/filter-nop.o -c seatac/filter-nop.C In file included from /<>/libbio/bio.h:4, from seatac/filter-nop.C:9: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seatac/filter-nop.C:10: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ seatac/filter-nop.C:67:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 67 | "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filter-nop.C:67:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 67 | "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filter-nop.C:67:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 67 | "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filter-nop.C:67:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 67 | "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filter-nop.C:67:78: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 67 | "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filter-nop.C:67:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 67 | "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filter-nop.C:67:102: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 67 | "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filter-nop.C: In function ‘void* construct(char*)’: seatac/filter-nop.C:116:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 116 | char *seq1 = "UNK"; | ^~~~~ seatac/filter-nop.C:117:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 117 | char *seq2 = "UNK"; | ^~~~~ rm -f seatac/filter-nop.so && g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -shared -o seatac/filter-nop.so seatac/filter-nop.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/filter-heavychains.o -c seatac/filter-heavychains.C In file included from /<>/libutil/util++.H:4, from seatac/filter-heavychains.C:24: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seatac/filter-heavychains.C:25: seatac/heavychains.H: In member function ‘double DPTree::matchScore(kd_node, Match&)’: seatac/heavychains.H:374:19: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 374 | if ( (flo.X() && node[flo.intv].lo <= p.xlo || | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seatac/heavychains.H: In function ‘addHit’: seatac/heavychains.H:53:12: warning: ‘strncpy’ output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 53 | strncpy(assemblyId1, assemblyid1, 31); | ^ seatac/heavychains.H:54:12: warning: ‘strncpy’ output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 54 | strncpy(assemblyId2, assemblyid2, 31); | ^ seatac/heavychains.H:53:12: warning: ‘strncpy’ output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 53 | strncpy(assemblyId1, assemblyid1, 31); | ^ seatac/heavychains.H:54:12: warning: ‘strncpy’ output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 54 | strncpy(assemblyId2, assemblyid2, 31); | ^ seatac/heavychains.H:53:12: warning: ‘strncpy’ output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 53 | strncpy(assemblyId1, assemblyid1, 31); | ^ seatac/heavychains.H:54:12: warning: ‘strncpy’ output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 54 | strncpy(assemblyId2, assemblyid2, 31); | ^ rm -f seatac/filter-heavychains.so && g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -shared -o seatac/filter-heavychains.so seatac/filter-heavychains.o seatac/heavychains.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/leaff.o -c leaff/leaff.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from leaff/leaff.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ leaff/leaff.C:311:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 311 | fprintf(stderr, "WARNING: Didn't find sequence with iid '"uint32FMT"'\n", sid); | ^ leaff/leaff.C:400:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 400 | fprintf(stdout, "G\tseq\t%s:"uint32FMT"\t"uint32FMT"\t%s\n", | ^ leaff/leaff.C:400:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 400 | fprintf(stdout, "G\tseq\t%s:"uint32FMT"\t"uint32FMT"\t%s\n", | ^ leaff/leaff.C:469:22: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 469 | sprintf(def, "random"uint32FMTW(06), i); | ^ leaff/leaff.C:727:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 727 | fprintf(stderr, "Couldn't read "uint64FMT" bytes from '%s': %s\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/blocks.o -c leaff/blocks.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from leaff/blocks.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ leaff/blocks.C:32:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ leaff/blocks.C:32:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ leaff/blocks.C:32:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ leaff/blocks.C:32:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ leaff/blocks.C:40:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 40 | fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ leaff/blocks.C:40:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 40 | fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ leaff/blocks.C:40:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 40 | fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ leaff/blocks.C:40:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 40 | fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ leaff/blocks.C:42:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | fprintf(stdout, ". "uint32FMT" "uint32FMT" "uint32FMT"\n", s, pos, uint32ZERO); | ^ leaff/blocks.C:42:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | fprintf(stdout, ". "uint32FMT" "uint32FMT" "uint32FMT"\n", s, pos, uint32ZERO); | ^ leaff/blocks.C:42:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | fprintf(stdout, ". "uint32FMT" "uint32FMT" "uint32FMT"\n", s, pos, uint32ZERO); | ^ leaff/blocks.C: In function ‘void dumpBlocks(char*)’: leaff/blocks.C:7:16: warning: unused variable ‘S’ [-Wunused-variable] 7 | seqInCore *S = 0L; | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/dups.o -c leaff/dups.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from leaff/dups.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ leaff/dups.C:26:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 26 | fprintf(stdout, uint32FMT" <-> "uint32FMT"\n", sa->getIID(), sb->getIID()); | ^ leaff/dups.C:28:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 28 | fprintf(stderr, "COLLISION DETECTED BETWEEN %s:"uint32FMT" AND %s:"uint32FMT"!\nPLEASE REPORT THIS TO bri@walenz.org!\n", | ^ leaff/dups.C:28:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 28 | fprintf(stderr, "COLLISION DETECTED BETWEEN %s:"uint32FMT" AND %s:"uint32FMT"!\nPLEASE REPORT THIS TO bri@walenz.org!\n", | ^ leaff/dups.C:52:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 52 | fprintf(stderr, "Internal error: found two copies of the same sequence iid ("uint32FMT")!\n", result[idx].i); | ^ leaff/dups.C:60:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 60 | fprintf(stdout, uint32FMT":%s\n"uint32FMT":%s\n\n", | ^ leaff/dups.C:64:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(stderr, "COLLISION DETECTED BETWEEN IID "uint32FMT" AND "uint32FMT"!\nPLEASE REPORT THIS TO bri@walenz.org!\n", | ^ leaff/dups.C:64:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(stderr, "COLLISION DETECTED BETWEEN IID "uint32FMT" AND "uint32FMT"!\nPLEASE REPORT THIS TO bri@walenz.org!\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/gc.o -c leaff/gc.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from leaff/gc.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ leaff/gc.C:68:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/partition.o -c leaff/partition.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from leaff/partition.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ leaff/partition.C:55:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | fprintf(stderr, "ERROR: Failed to partition "uint32FMT"\n", i); | ^ leaff/partition.C:62:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | sprintf(filename, "%s-"uint32FMTW(03)".fasta", prefix, o); | ^ leaff/partition.C:77:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 77 | fprintf(stderr, "Huh? '%s' "uint32FMT" != "uint32FMT"\n", S->header(), S->sequenceLength(), p[i].length); | ^ leaff/partition.C:77:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 77 | fprintf(stderr, "Huh? '%s' "uint32FMT" != "uint32FMT"\n", S->header(), S->sequenceLength(), p[i].length); | ^ leaff/partition.C:96:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 96 | fprintf(stdout, uint32FMT"]("uint32FMT")", o, sizeP); | ^ leaff/partition.C:99:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 99 | fprintf(stdout, " "uint32FMT"("uint32FMT")", p[i].index, p[i].length); | ^ leaff/partition.C:99:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 99 | fprintf(stdout, " "uint32FMT"("uint32FMT")", p[i].index, p[i].length); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/simseq.o -c leaff/simseq.C In file included from /<>/libbio/bio.h:4, from leaff/simseq.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/stats.o -c leaff/stats.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from leaff/stats.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ leaff/stats.C:110:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(stdout, "numSeqs "uint32FMT"\n", numSeq); | ^ leaff/stats.C:112:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 112 | fprintf(stdout, "SPAN (smallest "uint32FMT" largest "uint32FMT")\n", Ls[numSeq-1], Ls[0]); | ^ leaff/stats.C:112:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 112 | fprintf(stdout, "SPAN (smallest "uint32FMT" largest "uint32FMT")\n", Ls[numSeq-1], Ls[0]); | ^ leaff/stats.C:114:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 114 | fprintf(stdout, "n"uint32FMT" "uint32FMT" at index "uint32FMT"\n", 10 * i, n50s[i], l50s[i]); | ^ leaff/stats.C:114:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 114 | fprintf(stdout, "n"uint32FMT" "uint32FMT" at index "uint32FMT"\n", 10 * i, n50s[i], l50s[i]); | ^ leaff/stats.C:114:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 114 | fprintf(stdout, "n"uint32FMT" "uint32FMT" at index "uint32FMT"\n", 10 * i, n50s[i], l50s[i]); | ^ leaff/stats.C:115:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 115 | fprintf(stdout, "totLen "uint64FMTW(10)"\n", Ss); | ^ leaff/stats.C:116:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 116 | fprintf(stdout, "refLen "uint64FMTW(10)"\n", Rs); | ^ leaff/stats.C:118:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 118 | fprintf(stdout, "BASES (smallest "uint32FMT" largest "uint32FMT")\n", Lb[numSeq-1], Lb[0]); | ^ leaff/stats.C:118:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 118 | fprintf(stdout, "BASES (smallest "uint32FMT" largest "uint32FMT")\n", Lb[numSeq-1], Lb[0]); | ^ leaff/stats.C:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stdout, "n"uint32FMT" "uint32FMT" at index "uint32FMT"\n", 10 * i, n50b[i], l50b[i]); | ^ leaff/stats.C:120:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stdout, "n"uint32FMT" "uint32FMT" at index "uint32FMT"\n", 10 * i, n50b[i], l50b[i]); | ^ leaff/stats.C:120:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stdout, "n"uint32FMT" "uint32FMT" at index "uint32FMT"\n", 10 * i, n50b[i], l50b[i]); | ^ leaff/stats.C:121:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 121 | fprintf(stdout, "totLen "uint64FMTW(10)"\n", Sb); | ^ leaff/stats.C:122:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 122 | fprintf(stdout, "refLen "uint64FMTW(10)"\n", Rb); | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o leaff/leaff leaff/leaff.o leaff/blocks.o leaff/dups.o leaff/gc.o leaff/partition.o leaff/simseq.o leaff/stats.o /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/meryl.o -c meryl/meryl.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/meryl.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/args.o -c meryl/args.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/args.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ meryl/args.C:26:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 26 | fprintf(stderr, "writeString()-- Failed to write string of length "uint32FMT": %s\n", len, strerror(errno)); | ^ meryl/args.C: In function ‘char* readString(FILE*)’: meryl/args.C:40:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 40 | fread(&len, sizeof(uint32), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/args.C:50:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 50 | fread(str, sizeof(char), len, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/args.C: In constructor ‘merylArgs::merylArgs(const char*)’: meryl/args.C:513:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 513 | fread(magic, sizeof(char), 16, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/args.C:521:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fread(this, sizeof(merylArgs), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/binaryOp.o -c meryl/binaryOp.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/meryl.H:4, from meryl/binaryOp.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ meryl/binaryOp.C:43:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 43 | fprintf(stderr, "ERROR - mersize of '%s' is "uint32FMT"\n", args->mergeFiles[0], A->merSize()); | ^ meryl/binaryOp.C:44:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 44 | fprintf(stderr, "ERROR - mersize of '%s' is "uint32FMT"\n", args->mergeFiles[1], B->merSize()); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/build.o -c meryl/build.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/build.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ meryl/build.C:153:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 153 | sprintf(cmd, "qsub -t 1-"uint64FMT" -cwd -b n -j y -o %s-count-\\$TASK_ID.err %s -N mc%s %s-count.sh", | ^ meryl/build.C:156:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 156 | sprintf(cmd, "qsub -t 1-"uint64FMT" -cwd -b n -j y -o %s-count-\\$TASK_ID.err -N mc%s %s-count.sh", | ^ meryl/build.C:238:2: warning: #warning not submitting prepareBatch to grid [-Wcpp] 238 | #warning not submitting prepareBatch to grid | ^~~~~~~ meryl/build.C:293:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 293 | fprintf(stderr, " numMersActual = "uint64FMT"\n", args->numMersActual); | ^ meryl/build.C:294:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 294 | fprintf(stderr, " mersPerBatch = "uint64FMT"\n", args->mersPerBatch); | ^ meryl/build.C:295:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 295 | fprintf(stderr, " basesPerBatch = "uint64FMT"\n", args->basesPerBatch); | ^ meryl/build.C:296:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 296 | fprintf(stderr, " numBuckets = "uint64FMT" ("uint32FMT" bits)\n", args->numBuckets, args->numBuckets_log2); | ^ meryl/build.C:296:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 296 | fprintf(stderr, " numBuckets = "uint64FMT" ("uint32FMT" bits)\n", args->numBuckets, args->numBuckets_log2); | ^ meryl/build.C:297:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 297 | fprintf(stderr, " bucketPointerWidth = "uint32FMT"\n", args->bucketPointerWidth); | ^ meryl/build.C:298:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 298 | fprintf(stderr, " merDataWidth = "uint32FMT"\n", args->merDataWidth); | ^ meryl/build.C:305:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 305 | fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", | ^ meryl/build.C:305:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 305 | fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", | ^ meryl/build.C:305:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 305 | fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", | ^ meryl/build.C:305:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 305 | fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", | ^ meryl/build.C:310:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 310 | fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", | ^ meryl/build.C:310:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 310 | fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", | ^ meryl/build.C:310:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 310 | fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", | ^ meryl/build.C:310:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 310 | fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", | ^ meryl/build.C:314:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 314 | fprintf(stderr, " numMersActual = "uint64FMT"\n", args->numMersActual); | ^ meryl/build.C:315:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 315 | fprintf(stderr, " mersPerBatch = "uint64FMT"\n", args->mersPerBatch); | ^ meryl/build.C:316:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 316 | fprintf(stderr, " basesPerBatch = "uint64FMT"\n", args->basesPerBatch); | ^ meryl/build.C:317:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 317 | fprintf(stderr, " numBuckets = "uint64FMT" ("uint32FMT" bits)\n", args->numBuckets, args->numBuckets_log2); | ^ meryl/build.C:317:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 317 | fprintf(stderr, " numBuckets = "uint64FMT" ("uint32FMT" bits)\n", args->numBuckets, args->numBuckets_log2); | ^ meryl/build.C:318:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 318 | fprintf(stderr, " bucketPointerWidth = "uint32FMT"\n", args->bucketPointerWidth); | ^ meryl/build.C:319:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 319 | fprintf(stderr, " merDataWidth = "uint32FMT"\n", args->merDataWidth); | ^ meryl/build.C:342:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 342 | sprintf(filename, "%s.batch"uint64FMT".mcdat", args->outputFile, segment); | ^ meryl/build.C:346:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 346 | fprintf(stderr, "Found result for batch "uint64FMT" in %s.\n", segment, filename); | ^ meryl/build.C:352:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 352 | fprintf(stderr, "Computing segment "uint64FMT" of "uint64FMT".\n", segment+1, args->segmentLimit); | ^ meryl/build.C:352:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 352 | fprintf(stderr, "Computing segment "uint64FMT" of "uint64FMT".\n", segment+1, args->segmentLimit); | ^ meryl/build.C:365:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 365 | fprintf(stderr, " Allocating "uint64FMT"MB for mer storage ("uint32FMT" bits wide).\n", | ^ meryl/build.C:365:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 365 | fprintf(stderr, " Allocating "uint64FMT"MB for mer storage ("uint32FMT" bits wide).\n", | ^ meryl/build.C:384:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 384 | fprintf(stderr, " Allocating "uint64FMT"MB for mer position storage.\n", | ^ meryl/build.C:390:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 390 | fprintf(stderr, " Allocating "uint64FMT"MB for bucket pointer table ("uint32FMT" bits wide).\n", | ^ meryl/build.C:390:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 390 | fprintf(stderr, " Allocating "uint64FMT"MB for bucket pointer table ("uint32FMT" bits wide).\n", | ^ meryl/build.C:396:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 396 | fprintf(stderr, " Allocating "uint64FMT"MB for counting the size of each bucket.\n", args->numBuckets >> 18); | ^ meryl/build.C:477:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 477 | fprintf(stderr, " Releasing "uint64FMT"MB from counting the size of each bucket.\n", args->numBuckets >> 18); | ^ meryl/build.C:532:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 532 | sprintf(batchOutputFile, "%s.batch"uint64FMT, args->outputFile, segment); | ^ meryl/build.C:552:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 552 | fprintf(stderr, "ERROR: In segment "uint64FMT"\n", segment); | ^ meryl/build.C:553:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 553 | fprintf(stderr, "ERROR: Bucket "uint64FMT" (out of "uint64FMT") ends before it starts!\n", | ^ meryl/build.C:553:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 553 | fprintf(stderr, "ERROR: Bucket "uint64FMT" (out of "uint64FMT") ends before it starts!\n", | ^ meryl/build.C:555:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 555 | fprintf(stderr, "ERROR: start="uint64FMT"\n", st); | ^ meryl/build.C:556:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 556 | fprintf(stderr, "ERROR: end ="uint64FMT"\n", ed); | ^ meryl/build.C:561:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 561 | fprintf(stderr, "ERROR: In segment "uint64FMT"\n", segment); | ^ meryl/build.C:562:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 562 | fprintf(stderr, "ERROR: Bucket "uint64FMT" (out of "uint64FMT") is HUGE!\n", | ^ meryl/build.C:562:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 562 | fprintf(stderr, "ERROR: Bucket "uint64FMT" (out of "uint64FMT") is HUGE!\n", | ^ meryl/build.C:564:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 564 | fprintf(stderr, "ERROR: start="uint64FMT"\n", st); | ^ meryl/build.C:565:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 565 | fprintf(stderr, "ERROR: end ="uint64FMT"\n", ed); | ^ meryl/build.C:667:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 667 | fprintf(stderr, "Segment "uint64FMT" finished.\n", segment); | ^ meryl/build.C:705:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 705 | fprintf(stdout, "%s -countbatch "uint64FMT" -o %s\n", args->execName, s, args->outputFile); | ^ meryl/build.C:783:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 783 | sprintf(argv[argc], "%s.batch"uint32FMT, args->outputFile, i); | ^ meryl/build.C:807:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 807 | sprintf(filename, "%s.batch"uint32FMT".mcidx", args->outputFile, i); | ^ meryl/build.C:809:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 809 | sprintf(filename, "%s.batch"uint32FMT".mcdat", args->outputFile, i); | ^ meryl/build.C:811:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 811 | sprintf(filename, "%s.batch"uint32FMT".mcpos", args->outputFile, i); | ^ meryl/build.C: In function ‘void prepareBatch(merylArgs*)’: meryl/build.C:310:23: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 4 has type ‘uint64’ {aka ‘long unsigned int’} [-Wformat=] 310 | fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 | estimateMemory(args->merSize, args->mersPerBatch, args->positionsEnabled) * args->numThreads, 312 | estimateMemory(args->merSize, args->numMersActual, args->positionsEnabled)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | uint64 {aka long unsigned int} meryl/build.C:310:23: warning: format ‘%lu’ expects a matching ‘long unsigned int’ argument [-Wformat=] meryl/build.C:310:23: warning: format ‘%lu’ expects a matching ‘long unsigned int’ argument [-Wformat=] meryl/build.C: In function ‘void runSegment(merylArgs*, uint64)’: meryl/build.C:585:10: warning: ‘void bzero(void*, size_t)’ clearing an object of type ‘class sortedList_t’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 585 | bzero(sortedList, sizeof(sortedList_t) * sortedListLen); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/build.C:26:7: note: ‘class sortedList_t’ declared here 26 | class sortedList_t { | ^~~~~~~~~~~~ meryl/build.C:412:8: warning: unused variable ‘mstring’ [-Wunused-variable] 412 | char mstring[256]; | ^~~~~~~ meryl/build.C: In function ‘void build(merylArgs*)’: meryl/build.C:769:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 769 | arga[argc] = false; argv[argc++] = "meryl-build-merge"; | ^~~~~~~~~~~~~~~~~~~ meryl/build.C:770:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 770 | arga[argc] = false; argv[argc++] = "-M"; | ^~~~ meryl/build.C:771:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 771 | arga[argc] = false; argv[argc++] = "merge"; | ^~~~~~~ meryl/build.C:775:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 775 | argv[argc++] = "-v"; | ^~~~ meryl/build.C:780:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 780 | argv[argc++] = "-s"; | ^~~~ meryl/build.C:787:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 787 | arga[argc] = false; argv[argc++] = "-o"; | ^~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/build-threads.o -c meryl/build-threads.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/build-threads.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/dump.o -c meryl/dump.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/meryl.H:4, from meryl/dump.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ meryl/dump.C:17:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | fprintf(stdout, ">"uint64FMT"\n%s\n", | ^ meryl/dump.C:35:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 35 | fprintf(stdout, ">"uint64FMT, M->theCount()); | ^ meryl/dump.C:37:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 37 | fprintf(stdout, " "uint32FMT, M->getPosition(i)); | ^ meryl/dump.C:50:2: warning: #warning make this a test [-Wcpp] 50 | #warning make this a test | ^~~~~~~ meryl/dump.C:72:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 72 | fprintf(stdout, "Found "uint64FMT" mers.\n", M->numberOfTotalMers()); | ^ meryl/dump.C:73:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 73 | fprintf(stdout, "Found "uint64FMT" distinct mers.\n", M->numberOfDistinctMers()); | ^ meryl/dump.C:74:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 74 | fprintf(stdout, "Found "uint64FMT" unique mers.\n", M->numberOfUniqueMers()); | ^ meryl/dump.C:87:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 87 | fprintf(stderr, "Found "uint64FMT" mers.\n", M->numberOfTotalMers()); | ^ meryl/dump.C:88:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 88 | fprintf(stderr, "Found "uint64FMT" distinct mers.\n", M->numberOfDistinctMers()); | ^ meryl/dump.C:89:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 89 | fprintf(stderr, "Found "uint64FMT" unique mers.\n", M->numberOfUniqueMers()); | ^ meryl/dump.C:91:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 91 | fprintf(stderr, "Largest mercount is "uint64FMT"; "uint64FMT" mers are too big for histogram.\n", | ^ meryl/dump.C:91:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 91 | fprintf(stderr, "Largest mercount is "uint64FMT"; "uint64FMT" mers are too big for histogram.\n", | ^ meryl/dump.C:101:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 101 | fprintf(stdout, uint32FMT"\t"uint64FMT"\t%.4f\t%.4f\n", | ^ meryl/dump.C:148:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, uint32FMT"\t"uint64FMT"\n", d, hist[d]); | ^ meryl/dump.C:151:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 151 | fprintf(stderr, "huge\t"uint64FMT"\n", histHuge); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/estimate.o -c meryl/estimate.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/estimate.C:4: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ meryl/estimate.C:54:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 54 | fprintf(stdout, "Can fit "uint64FMT" mers into table with prefix of "uint64FMT" bits, using %.3fMB (%.3fMB for positions)\n", | ^ meryl/estimate.C:54:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 54 | fprintf(stdout, "Can fit "uint64FMT" mers into table with prefix of "uint64FMT" bits, using %.3fMB (%.3fMB for positions)\n", | ^ meryl/estimate.C:162:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 162 | fprintf(stderr, uint64FMT" "uint32FMT"-mers can be computed using "uint64FMT"MB memory.\n", | ^ meryl/estimate.C:162:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 162 | fprintf(stderr, uint64FMT" "uint32FMT"-mers can be computed using "uint64FMT"MB memory.\n", | ^ meryl/estimate.C: In function ‘uint64 estimateMemory(uint32, uint64, bool)’: meryl/estimate.C:77:13: warning: unused variable ‘N’ [-Wunused-variable] 77 | uint64 N = logBaseTwo64(numMers); // Width of the bucket pointer table | ^ meryl/estimate.C:73:11: warning: variable ‘tMin’ set but not used [-Wunused-but-set-variable] 73 | uint64 tMin = tMax; | ^~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/merge.o -c meryl/merge.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/meryl.H:4, from meryl/merge.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ meryl/merge.C:14:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 14 | fprintf(stderr, "ERROR - must have at least two databases (you gave "uint32FMT")!\n", args->mergeFilesLen); | ^ meryl/merge.C: In function ‘multipleOperations(merylArgs*)’: meryl/merge.C:237:10: warning: ‘operator delete(void*, unsigned long)’ called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 237 | delete R; | ^ meryl/merge.C:37:71: note: returned from ‘operator new[](unsigned long)’ 37 | merylStreamReader **R = new merylStreamReader* [args->mergeFilesLen]; | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/unaryOp.o -c meryl/unaryOp.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/meryl.H:4, from meryl/unaryOp.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ rm -f meryl/libmerylguts.a && ar ruvs meryl/libmerylguts.a meryl/args.o meryl/binaryOp.o meryl/build.o meryl/build-threads.o meryl/dump.o meryl/estimate.o meryl/merge.o meryl/unaryOp.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating meryl/libmerylguts.a a - meryl/args.o a - meryl/binaryOp.o a - meryl/build.o a - meryl/build-threads.o a - meryl/dump.o a - meryl/estimate.o a - meryl/merge.o a - meryl/unaryOp.o g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o meryl/meryl meryl/meryl.o meryl/libmerylguts.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/simple.o -c meryl/simple.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/simple.C:8: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ meryl/simple.C:98:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 98 | fprintf(stderr, "Guessing "uint64FMT" mers in input '%s'\n", numMers, inName); | ^ meryl/simple.C:99:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 99 | fprintf(stderr, "Allocating "uint64FMT"MB for mer storage.\n", numMers * 8 >> 20); | ^ meryl/simple.C:129:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "Found "uint64FMT" mers in input '%s'\n", theMersLen, inName); | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o meryl/simple meryl/simple.o /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/mapMers.o -c meryl/mapMers.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/mapMers.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ meryl/mapMers.C:135:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 135 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" | ^ meryl/mapMers.C:135:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 135 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" | ^ meryl/mapMers.C:136:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" | ^ meryl/mapMers.C:136:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" | ^ meryl/mapMers.C:136:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" | ^ meryl/mapMers.C:136:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" | ^ meryl/mapMers.C:136:76: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" | ^ meryl/mapMers.C:136:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" | ^ meryl/mapMers.C:136:102: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" | ^ meryl/mapMers.C:137:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 137 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:137:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 137 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:137:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 137 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:137:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 137 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:137:76: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 137 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:137:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 137 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:137:102: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 137 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:165:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 165 | fprintf(stdout, "%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", S->header(), beg, end+merSize, end+merSize - beg); | ^ meryl/mapMers.C:165:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 165 | fprintf(stdout, "%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", S->header(), beg, end+merSize, end+merSize - beg); | ^ meryl/mapMers.C:165:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 165 | fprintf(stdout, "%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", S->header(), beg, end+merSize, end+merSize - beg); | ^ meryl/mapMers.C:171:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stdout, "%s\t"uint64FMT"\tuncovered\n", S->header(), MS->thePositionInSequence()); | ^ meryl/mapMers.C:176:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 176 | fprintf(stdout, "%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", S->header(), beg, end+merSize, end+merSize - beg); | ^ meryl/mapMers.C:176:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 176 | fprintf(stdout, "%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", S->header(), beg, end+merSize, end+merSize - beg); | ^ meryl/mapMers.C:176:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 176 | fprintf(stdout, "%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", S->header(), beg, end+merSize, end+merSize - beg); | ^ meryl/mapMers.C:178:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 178 | fprintf(stderr, "numCovReg: "uint64FMT"\n", numCovReg); | ^ meryl/mapMers.C:179:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 179 | fprintf(stderr, "lenCovReg: "uint64FMT"\n", lenCovReg); | ^ meryl/mapMers.C:193:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 193 | fprintf(stdout, "%s\t%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:193:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 193 | fprintf(stdout, "%s\t%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:193:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 193 | fprintf(stdout, "%s\t%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:193:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 193 | fprintf(stdout, "%s\t%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:193:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 193 | fprintf(stdout, "%s\t%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C: In function ‘int main(int, char**)’: meryl/mapMers.C:21:13: warning: variable ‘beVerbose’ set but not used [-Wunused-but-set-variable] 21 | bool beVerbose = false; | ^~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o meryl/mapMers meryl/mapMers.o /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/mapMers-depth.o -c meryl/mapMers-depth.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/mapMers-depth.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o meryl/mapMers-depth meryl/mapMers-depth.o /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/kmer-mask.o -c meryl/kmer-mask.C In file included from /<>/libutil/util++.H:4, from meryl/kmer-mask.C:4: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ meryl/kmer-mask.C:754:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 754 | fprintf(stderr, "aClean "FW"\n", g->thresholdCounts[0][0]); | ^ meryl/kmer-mask.C:755:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 755 | fprintf(stderr, "aMurky "FW"\n", g->thresholdCounts[1][0]); | ^ meryl/kmer-mask.C:756:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 756 | fprintf(stderr, "aMatch "FW"\n", g->thresholdCounts[2][0]); | ^ meryl/kmer-mask.C:757:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 757 | fprintf(stderr, "aMixed "FW"\n", g->thresholdCounts[3][0]); | ^ meryl/kmer-mask.C:760:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 760 | fprintf(stderr, "aClean "FW" "FW" "FW" "FW"\n", g->thresholdCounts[0][0], g->thresholdCounts[0][1], g->thresholdCounts[0][2], g->thresholdCounts[0][3]); | ^ meryl/kmer-mask.C:760:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 760 | fprintf(stderr, "aClean "FW" "FW" "FW" "FW"\n", g->thresholdCounts[0][0], g->thresholdCounts[0][1], g->thresholdCounts[0][2], g->thresholdCounts[0][3]); | ^ meryl/kmer-mask.C:760:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 760 | fprintf(stderr, "aClean "FW" "FW" "FW" "FW"\n", g->thresholdCounts[0][0], g->thresholdCounts[0][1], g->thresholdCounts[0][2], g->thresholdCounts[0][3]); | ^ meryl/kmer-mask.C:760:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 760 | fprintf(stderr, "aClean "FW" "FW" "FW" "FW"\n", g->thresholdCounts[0][0], g->thresholdCounts[0][1], g->thresholdCounts[0][2], g->thresholdCounts[0][3]); | ^ meryl/kmer-mask.C:761:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 761 | fprintf(stderr, "aMurky "FW" "FW" "FW" "FW"\n", g->thresholdCounts[1][0], g->thresholdCounts[1][1], g->thresholdCounts[1][2], g->thresholdCounts[1][3]); | ^ meryl/kmer-mask.C:761:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 761 | fprintf(stderr, "aMurky "FW" "FW" "FW" "FW"\n", g->thresholdCounts[1][0], g->thresholdCounts[1][1], g->thresholdCounts[1][2], g->thresholdCounts[1][3]); | ^ meryl/kmer-mask.C:761:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 761 | fprintf(stderr, "aMurky "FW" "FW" "FW" "FW"\n", g->thresholdCounts[1][0], g->thresholdCounts[1][1], g->thresholdCounts[1][2], g->thresholdCounts[1][3]); | ^ meryl/kmer-mask.C:761:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 761 | fprintf(stderr, "aMurky "FW" "FW" "FW" "FW"\n", g->thresholdCounts[1][0], g->thresholdCounts[1][1], g->thresholdCounts[1][2], g->thresholdCounts[1][3]); | ^ meryl/kmer-mask.C:762:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 762 | fprintf(stderr, "aMatch "FW" "FW" "FW" "FW"\n", g->thresholdCounts[2][0], g->thresholdCounts[2][1], g->thresholdCounts[2][2], g->thresholdCounts[2][3]); | ^ meryl/kmer-mask.C:762:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 762 | fprintf(stderr, "aMatch "FW" "FW" "FW" "FW"\n", g->thresholdCounts[2][0], g->thresholdCounts[2][1], g->thresholdCounts[2][2], g->thresholdCounts[2][3]); | ^ meryl/kmer-mask.C:762:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 762 | fprintf(stderr, "aMatch "FW" "FW" "FW" "FW"\n", g->thresholdCounts[2][0], g->thresholdCounts[2][1], g->thresholdCounts[2][2], g->thresholdCounts[2][3]); | ^ meryl/kmer-mask.C:762:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 762 | fprintf(stderr, "aMatch "FW" "FW" "FW" "FW"\n", g->thresholdCounts[2][0], g->thresholdCounts[2][1], g->thresholdCounts[2][2], g->thresholdCounts[2][3]); | ^ meryl/kmer-mask.C:763:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 763 | fprintf(stderr, "aMixed "FW" "FW" "FW" "FW"\n", g->thresholdCounts[3][0], g->thresholdCounts[3][1], g->thresholdCounts[3][2], g->thresholdCounts[3][3]); | ^ meryl/kmer-mask.C:763:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 763 | fprintf(stderr, "aMixed "FW" "FW" "FW" "FW"\n", g->thresholdCounts[3][0], g->thresholdCounts[3][1], g->thresholdCounts[3][2], g->thresholdCounts[3][3]); | ^ meryl/kmer-mask.C:763:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 763 | fprintf(stderr, "aMixed "FW" "FW" "FW" "FW"\n", g->thresholdCounts[3][0], g->thresholdCounts[3][1], g->thresholdCounts[3][2], g->thresholdCounts[3][3]); | ^ meryl/kmer-mask.C:763:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 763 | fprintf(stderr, "aMixed "FW" "FW" "FW" "FW"\n", g->thresholdCounts[3][0], g->thresholdCounts[3][1], g->thresholdCounts[3][2], g->thresholdCounts[3][3]); | ^ meryl/kmer-mask.C: In member function ‘bool fastqRecord::load(FILE*, FILE*)’: meryl/kmer-mask.C:69:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | fgets(a1, 1024, FASTQ1); chomp(a1); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:70:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 70 | fgets(a2, maxLength, FASTQ1); chomp(a2); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:71:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 71 | fgets(a3, 1024, FASTQ1); chomp(a3); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:72:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 72 | fgets(a4, maxLength, FASTQ1); chomp(a4); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:83:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 83 | fgets(b1, 1024, FASTQ2); chomp(b1); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:84:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 84 | fgets(b2, maxLength, FASTQ2); chomp(b2); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:85:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 85 | fgets(b3, 1024, FASTQ2); chomp(b3); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:86:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | fgets(b4, maxLength, FASTQ2); chomp(b4); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o meryl/kmer-mask meryl/kmer-mask.o /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/hitMatrix.o -c seagen/hitMatrix.C In file included from /<>/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/hitMatrix.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/searchGENOME.H:22: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seagen/searchGENOME.H:25: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.C:642:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 642 | sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/hitMatrix.C:642:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 642 | sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/hitMatrix.C:642:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 642 | sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/hitMatrix.C:642:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 642 | sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/hitMatrix.C:642:80: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 642 | sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/hitMatrix.C:642:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 642 | sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/hitMatrix.C:642:107: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 642 | sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 126 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/searchGENOME.o -c seagen/searchGENOME.C In file included from /<>/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/searchGENOME.C:4: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/searchGENOME.H:22: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seagen/searchGENOME.H:25: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 126 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/configuration.o -c seagen/configuration.C In file included from /<>/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/configuration.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/searchGENOME.H:22: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seagen/searchGENOME.H:25: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/configuration.C:84:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "\n"uint32FMTW(7)" sequences in %5.2f seconds, %8.3f per second.\n", nq, tm, nq/tm); | ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 126 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/encodedQuery.o -c seagen/encodedQuery.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seagen/encodedQuery.H:6, from seagen/encodedQuery.C:3: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ seagen/encodedQuery.C:142:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 142 | fprintf(stderr, "encodedQuery::test()-- mersAvail incorrect: Recomputed:"uint32FMT" Real:"uint32FMT"\n", _mersAvail, _r_mersAvail); | ^ seagen/encodedQuery.C:142:88: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 142 | fprintf(stderr, "encodedQuery::test()-- mersAvail incorrect: Recomputed:"uint32FMT" Real:"uint32FMT"\n", _mersAvail, _r_mersAvail); | ^ seagen/encodedQuery.C:152:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 152 | fprintf(stderr, "encodedQuery::test()-- skip["uint32FMTW(4)"] incorrect: Acc:%d Real:%d\n", i, getSkip(i, true), _r_skip[i]); | ^ seagen/encodedQuery.C:160:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 160 | fprintf(stderr, "encodedQuery::test()-- mers["uint32FMTW(4)"] incorrect: Acc:"uint64HEX" %s Real:"uint64HEX" %s\n", | ^ seagen/encodedQuery.C:160:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 160 | fprintf(stderr, "encodedQuery::test()-- mers["uint32FMTW(4)"] incorrect: Acc:"uint64HEX" %s Real:"uint64HEX" %s\n", | ^ seagen/encodedQuery.C:160:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 160 | fprintf(stderr, "encodedQuery::test()-- mers["uint32FMTW(4)"] incorrect: Acc:"uint64HEX" %s Real:"uint64HEX" %s\n", | ^ seagen/encodedQuery.C:209:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 209 | fprintf(stderr, "encodedQuery::addOutput()-- from "uint32FMT" to "uint32FMT" bytes.\n", | ^ seagen/encodedQuery.C:209:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 209 | fprintf(stderr, "encodedQuery::addOutput()-- from "uint32FMT" to "uint32FMT" bytes.\n", | ^ seagen/encodedQuery.C: In member function ‘void encodedQuery::addOutput(void*, uint32)’: seagen/encodedQuery.C:207:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 207 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/thr-deadlock.o -c seagen/thr-deadlock.C In file included from /<>/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/thr-deadlock.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/searchGENOME.H:22: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seagen/searchGENOME.H:25: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 126 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/thr-loader.o -c seagen/thr-loader.C In file included from /<>/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/thr-loader.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/searchGENOME.H:22: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seagen/searchGENOME.H:25: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 126 | } catch (std::bad_alloc) { | ^~~~~~~~~ seagen/thr-loader.C: In function ‘void* loaderThread(void*)’: seagen/thr-loader.C:14:17: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 14 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/thr-search.o -c seagen/thr-search.C In file included from /<>/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/thr-search.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/searchGENOME.H:22: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seagen/searchGENOME.H:25: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 126 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/thr-output.o -c seagen/thr-output.C In file included from /<>/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/thr-output.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/searchGENOME.H:22: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seagen/searchGENOME.H:25: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 126 | } catch (std::bad_alloc) { | ^~~~~~~~~ seagen/thr-output.C: In function ‘void* writerThread(void*, void*)’: seagen/thr-output.C:48:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 48 | write(config._outputFile, query->theOutput(), query->theOutputLength()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seagen/thr-output.C:62:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 62 | write(config._matchCountsFile, str, strlen(str)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/hitMatrix-sort.o -c seagen/hitMatrix-sort.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seagen/hitMatrix.H:8, from seagen/hitMatrix-sort.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/hitMatrix.H:9: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 126 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/aHit.o -c seagen/aHit.C In file included from /<>/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/aHit.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seagen/aHit.H:5: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ seagen/aHit.C:20:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 20 | fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/aHit.C:20:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 20 | fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/aHit.C:20:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 20 | fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/aHit.C:20:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 20 | fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/aHit.C:20:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 20 | fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/aHit.C:20:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 20 | fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/aHit.C:20:98: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 20 | fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/aHit.C: In function ‘void ahit_readBinary(aHit*, FILE*)’: seagen/aHit.C:12:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 12 | fread(a, sizeof(aHit), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o seagen/seagen seagen/hitMatrix.o seagen/searchGENOME.o seagen/configuration.o seagen/encodedQuery.o seagen/thr-deadlock.o seagen/thr-loader.o seagen/thr-search.o seagen/thr-output.o seagen/hitMatrix-sort.o seagen/aHit.o /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/hitConverter.o -c seagen/hitConverter.C In file included from /<>/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/hitConverter.C:3: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seagen/aHit.H:5: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ seagen/hitConverter.C: In function ‘void asc2bin(FILE*, FILE*)’: seagen/hitConverter.C:39:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 39 | fgets(b, 1024, I); | ~~~~~^~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o seagen/hitConverter seagen/hitConverter.o seagen/aHit.o /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/filterEST.o -c seagen/filterEST.C In file included from /<>/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/filterEST.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seagen/aHit.H:5: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/filterEST.C:7: seagen/hitReader.H:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ seagen/hitReader.H:62:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ seagen/filterEST.C:76:11: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 76 | " hits saved:"uint32FMTW(8)"/"uint32FMTW(8)" = %6.3f%%\r", | ^ seagen/filterEST.C:76:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 76 | " hits saved:"uint32FMTW(8)"/"uint32FMTW(8)" = %6.3f%%\r", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/filterEST-complicated.o -c seagen/filterEST-complicated.C In file included from /<>/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/filterEST-complicated.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seagen/aHit.H:5: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/filterEST-complicated.C:7: seagen/hitReader.H:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ seagen/hitReader.H:62:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ seagen/filterEST-complicated.C:67:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 67 | fprintf(logFile, uint32FMT"] unique: aggressively filtered to "uint32FMT" hits out of "uint32FMT" hits.\n", | ^ seagen/filterEST-complicated.C:67:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 67 | fprintf(logFile, uint32FMT"] unique: aggressively filtered to "uint32FMT" hits out of "uint32FMT" hits.\n", | ^ seagen/filterEST-complicated.C:115:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 115 | fprintf(logFile, uint32FMT"] knee: filtered "uint32FMT" hits down to "uint32FMT" hits using threshold %f\n", | ^ seagen/filterEST-complicated.C:115:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 115 | fprintf(logFile, uint32FMT"] knee: filtered "uint32FMT" hits down to "uint32FMT" hits using threshold %f\n", | ^ seagen/filterEST-complicated.C:139:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 139 | fprintf(logFile, uint32FMT"] uniform: uniform signal strength, saving the first "uint32FMT" hits out of "uint32FMT" hits, best=%f, worst=%f\n", | ^ seagen/filterEST-complicated.C:139:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 139 | fprintf(logFile, uint32FMT"] uniform: uniform signal strength, saving the first "uint32FMT" hits out of "uint32FMT" hits, best=%f, worst=%f\n", | ^ seagen/filterEST-complicated.C:174:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 174 | fprintf(logFile, uint32FMT"] diff: has no clear signal knee, saving the first "uint32FMT" hits out of "uint32FMT" hits, best=%f, worst=%f, largestdiff=%f\n", | ^ seagen/filterEST-complicated.C:174:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 174 | fprintf(logFile, uint32FMT"] diff: has no clear signal knee, saving the first "uint32FMT" hits out of "uint32FMT" hits, best=%f, worst=%f, largestdiff=%f\n", | ^ seagen/filterEST-complicated.C:228:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 228 | fprintf(logFile, uint32FMT"] spike: at "uint32FMT", "uint32FMT" hits saved: thresh=%f, "uint32FMT" hits, best=%f, worst=%f\n", | ^ seagen/filterEST-complicated.C:228:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 228 | fprintf(logFile, uint32FMT"] spike: at "uint32FMT", "uint32FMT" hits saved: thresh=%f, "uint32FMT" hits, best=%f, worst=%f\n", | ^ seagen/filterEST-complicated.C:228:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 228 | fprintf(logFile, uint32FMT"] spike: at "uint32FMT", "uint32FMT" hits saved: thresh=%f, "uint32FMT" hits, best=%f, worst=%f\n", | ^ seagen/filterEST-complicated.C:277:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 277 | fprintf(logFile, uint32FMT"] is an unclassified signal, "uint32FMT" hits saved out of "uint32FMT" hits, best=%f, worst=%f\n", | ^ seagen/filterEST-complicated.C:277:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 277 | fprintf(logFile, uint32FMT"] is an unclassified signal, "uint32FMT" hits saved out of "uint32FMT" hits, best=%f, worst=%f\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/hitReader.o -c seagen/hitReader.C In file included from /<>/libbio/bio.h:4, from seagen/hitReader.H:7, from seagen/hitReader.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seagen/aHit.H:5, from seagen/hitReader.H:8: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ seagen/hitReader.H:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ seagen/hitReader.H:62:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o seagen/filterEST seagen/filterEST.o seagen/filterEST-complicated.o seagen/hitReader.o seagen/aHit.o /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/filterMRNA.o -c seagen/filterMRNA.C In file included from /<>/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/filterMRNA.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seagen/aHit.H:5: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/filterMRNA.C:7: seagen/hitReader.H:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ seagen/hitReader.H:62:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ seagen/filterMRNA.C:53:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 53 | fprintf(stderr, " scores at least %4.2f AND at least "uint32FMT" bases covered are always output\n", MC, ML); | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o seagen/filterMRNA seagen/filterMRNA.o seagen/hitReader.o seagen/aHit.o /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/filterNULL.o -c seagen/filterNULL.C In file included from /<>/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/filterNULL.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seagen/aHit.H:5: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/filterNULL.C:2: seagen/hitReader.H:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ seagen/hitReader.H:62:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o seagen/filterNULL seagen/filterNULL.o seagen/hitReader.o seagen/aHit.o /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/filtertest.o -c seagen/filtertest.C In file included from /<>/libbio/bio.h:4, from seagen/filtertest.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ seagen/filtertest.C:180:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "reading hits "uint32FMT"\r", hitsLen); | ^ seagen/filtertest.C:186:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 186 | fprintf(stderr, "reading hits "uint32FMT"\n", hitsLen); | ^ seagen/filtertest.C:308:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, "%f %f %f %6.4f %6.4f "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/filtertest.C:308:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, "%f %f %f %6.4f %6.4f "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/filtertest.C:308:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, "%f %f %f %6.4f %6.4f "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/filtertest.C:308:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, "%f %f %f %6.4f %6.4f "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/filtertest.C: In function ‘void ahit_readBinary(aHit*, FILE*)’: seagen/filtertest.C:39:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 39 | fread(a, sizeof(aHit), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ seagen/filtertest.C: In function ‘int main(int, char**)’: seagen/filtertest.C:162:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 162 | fgets(hitLine, 1024, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o seagen/filtertest seagen/filtertest.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/sortHits.o -c seagen/sortHits.C In file included from /<>/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/sortHits.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seagen/aHit.H:5: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ seagen/sortHits.C: In member function ‘bool aHitReader::readHit(aHit&)’: seagen/sortHits.C:52:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 52 | fgets(buffer, 1024, theFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ seagen/sortHits.C: In member function ‘void aHitTemporary::nextHit()’: seagen/sortHits.C:119:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | fread(&hit, sizeof(aHit), 1, theFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o seagen/sortHits seagen/sortHits.o seagen/aHit.o /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/filterESTsimple.o -c seagen/filterESTsimple.C In file included from /<>/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/filterESTsimple.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seagen/aHit.H:5: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/filterESTsimple.C:12: seagen/hitReader.H:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ seagen/hitReader.H:62:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o seagen/filterESTsimple seagen/filterESTsimple.o seagen/hitReader.o seagen/aHit.o /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/cleanPolishes.o -c sim4dbutils/cleanPolishes.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from sim4dbutils/cleanPolishes.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/cleanPolishes.C:178:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 178 | fprintf(stderr, "A big intron is one that is at least "uint32FMT"bp long.\n", intronLimit); | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/cleanPolishes sim4dbutils/cleanPolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/fixPolishesIID.o -c sim4dbutils/fixPolishesIID.C In file included from /<>/libbio/bio.h:4, from sim4dbutils/fixPolishesIID.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/fixPolishesIID.C:7: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/fixPolishesIID sim4dbutils/fixPolishesIID.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/comparePolishes.o -c sim4dbutils/comparePolishes.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from sim4dbutils/comparePolishes.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/comparePolishes.C:308:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/comparePolishes.C:308:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/comparePolishes.C:308:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/comparePolishes.C:308:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/comparePolishes.C:308:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/comparePolishes.C:308:118: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/comparePolishes.C:308:145: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/comparePolishes.C:308:158: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/comparePolishes.C:452:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 452 | fprintf(stderr, "ERROR! inA="uint32FMT" inB="uint32FMT"\n", inA, inB); | ^ sim4dbutils/comparePolishes.C:452:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 452 | fprintf(stderr, "ERROR! inA="uint32FMT" inB="uint32FMT"\n", inA, inB); | ^ sim4dbutils/comparePolishes.C:484:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 484 | fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", | ^ sim4dbutils/comparePolishes.C:484:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 484 | fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", | ^ sim4dbutils/comparePolishes.C:484:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 484 | fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", | ^ sim4dbutils/comparePolishes.C:484:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 484 | fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", | ^ sim4dbutils/comparePolishes.C:484:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 484 | fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", | ^ sim4dbutils/comparePolishes.C:484:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 484 | fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", | ^ sim4dbutils/comparePolishes.C:484:156: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 484 | fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", | ^ sim4dbutils/comparePolishes.C:520:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 520 | fprintf(stderr, "\ngood:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\n", | ^ sim4dbutils/comparePolishes.C:520:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 520 | fprintf(stderr, "\ngood:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\n", | ^ sim4dbutils/comparePolishes.C:520:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 520 | fprintf(stderr, "\ngood:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\n", | ^ sim4dbutils/comparePolishes.C:520:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 520 | fprintf(stderr, "\ngood:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\n", | ^ sim4dbutils/comparePolishes.C:520:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 520 | fprintf(stderr, "\ngood:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\n", | ^ sim4dbutils/comparePolishes.C:520:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 520 | fprintf(stderr, "\ngood:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\n", | ^ sim4dbutils/comparePolishes.C: In function ‘int main(int, char**)’: sim4dbutils/comparePolishes.C:74:20: warning: variable ‘doGFF3’ set but not used [-Wunused-but-set-variable] 74 | bool doGFF3; | ^~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/s4p_overlap.o -c sim4dbutils/s4p_overlap.C In file included from /<>/libutil/util++.H:4, from sim4dbutils/s4p_overlap.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/comparePolishes sim4dbutils/comparePolishes.o sim4dbutils/s4p_overlap.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm sim4dbutils/s4p_overlap.H:18:10: warning: ‘findOverlap’ violates the C++ One Definition Rule [-Wodr] 18 | olap_t findOverlap(sim4polish *A, sim4polish *B); | ^ sim4dbutils/s4p_overlap.C:10:1: note: return value type mismatch 10 | findOverlap(sim4polish *A, sim4polish *B) { | ^ sim4dbutils/s4p_overlap.C:10:1: note: type ‘uint32’ should match type ‘olap_t’ sim4dbutils/s4p_overlap.C:10:1: note: ‘findOverlap’ was previously declared here sim4dbutils/s4p_overlap.C:10:1: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/convertToAtac.o -c sim4dbutils/convertToAtac.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/convertToAtac.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/convertToAtac.C:279:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 279 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:279:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 279 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:279:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 279 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:279:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 279 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:279:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 279 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:279:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 279 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:279:122: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 279 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:279:134: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 279 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:286:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 286 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:286:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 286 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:286:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 286 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:286:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 286 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:286:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 286 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:286:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 286 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:286:122: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 286 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:286:134: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 286 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:330:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 330 | fprintf(stderr, "Fixed "uint32FMT" indel/mismatches.\n", totalFixed); | ^ sim4dbutils/convertToAtac.C: In function ‘int main(int, char**)’: sim4dbutils/convertToAtac.C:241:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 241 | if (e->_estAlignment[aPos] != '-') | ^ sim4dbutils/convertToAtac.C:310:16: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 310 | if (e->_estAlignment[aPos] != '-') | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/convertToAtac sim4dbutils/convertToAtac.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/convertToExtent.o -c sim4dbutils/convertToExtent.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/convertToExtent.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/convertToExtent.C:43:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 43 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:43:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 43 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:43:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 43 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:43:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 43 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:43:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 43 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:43:88: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 43 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:43:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 43 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:43:118: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 43 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:50:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 50 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:50:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 50 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:50:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 50 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:50:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 50 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:50:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 50 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:50:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 50 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C: In function ‘int main(int, char**)’: sim4dbutils/convertToExtent.C:59:8: warning: variable ‘beVerbose’ set but not used [-Wunused-but-set-variable] 59 | bool beVerbose = false; | ^~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/convertToExtent sim4dbutils/convertToExtent.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/convertPolishes.o -c sim4dbutils/convertPolishes.C In file included from /<>/libbio/bio.h:4, from sim4dbutils/convertPolishes.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/convertPolishes.C:8: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/convertPolishes sim4dbutils/convertPolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/detectChimera.o -c sim4dbutils/detectChimera.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/detectChimera.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/detectChimera.C:129:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stdout, uint32FMTW(3)"-"uint32FMTW(3)" %s%s ("uint32FMT","uint32FMT")\n", | ^ sim4dbutils/detectChimera.C:129:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stdout, uint32FMTW(3)"-"uint32FMTW(3)" %s%s ("uint32FMT","uint32FMT")\n", | ^ sim4dbutils/detectChimera.C:129:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stdout, uint32FMTW(3)"-"uint32FMTW(3)" %s%s ("uint32FMT","uint32FMT")\n", | ^ sim4dbutils/detectChimera.C:153:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 153 | fprintf(stdout, "first "uint32FMT" alignments.\n", maxPts); | ^ sim4dbutils/detectChimera.C: In function ‘int main(int, char**)’: sim4dbutils/detectChimera.C:19:10: warning: variable ‘beVerbose’ set but not used [-Wunused-but-set-variable] 19 | bool beVerbose = false; | ^~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/detectChimera sim4dbutils/detectChimera.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/depthOfPolishes.o -c sim4dbutils/depthOfPolishes.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/depthOfPolishes.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/depthOfPolishes.C:103:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 103 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\n", | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/depthOfPolishes sim4dbutils/depthOfPolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/filterPolishes.o -c sim4dbutils/filterPolishes.C In file included from /<>/libbio/bio.h:4, from sim4dbutils/filterPolishes.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/filterPolishes.C:8: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/filterPolishes.C:178:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 178 | fprintf(stderr, "Filtering at "uint32FMT"%% coverage and "uint32FMT"%% identity and "uint32FMT"bp.\n", minC, minI, minL); | ^ sim4dbutils/filterPolishes.C:178:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 178 | fprintf(stderr, "Filtering at "uint32FMT"%% coverage and "uint32FMT"%% identity and "uint32FMT"bp.\n", minC, minI, minL); | ^ sim4dbutils/filterPolishes.C:178:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 178 | fprintf(stderr, "Filtering at "uint32FMT"%% coverage and "uint32FMT"%% identity and "uint32FMT"bp.\n", minC, minI, minL); | ^ sim4dbutils/filterPolishes.C:181:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | fprintf(stderr, "Filtering for cDNA idx "uint32FMT" and genomic idx "uint32FMT"\n", cdna, geno); | ^ sim4dbutils/filterPolishes.C:181:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | fprintf(stderr, "Filtering for cDNA idx "uint32FMT" and genomic idx "uint32FMT"\n", cdna, geno); | ^ sim4dbutils/filterPolishes.C:183:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 183 | fprintf(stderr, "Filtering for cDNA idx "uint32FMT".\n", cdna); | ^ sim4dbutils/filterPolishes.C:185:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 185 | fprintf(stderr, "Filtering for genomic idx "uint32FMT".\n", geno); | ^ sim4dbutils/filterPolishes.C:259:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 259 | fprintf(stderr, " Filter: %6.2f%% ("uint64FMT" matches processed) ("uint64FMT" failed/intractable)\r", | ^ sim4dbutils/filterPolishes.C:259:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 259 | fprintf(stderr, " Filter: %6.2f%% ("uint64FMT" matches processed) ("uint64FMT" failed/intractable)\r", | ^ sim4dbutils/filterPolishes.C:264:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 264 | fprintf(stderr, " Filter: %6.2f%% ("uint64FMT" matches processed)\r", | ^ sim4dbutils/filterPolishes.C:274:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 274 | fprintf(stderr, " Filter: %6.2f%% ("uint64FMT" matches processed) ("uint64FMT" failed/intractable)\n", | ^ sim4dbutils/filterPolishes.C:274:52: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 274 | fprintf(stderr, " Filter: %6.2f%% ("uint64FMT" matches processed) ("uint64FMT" failed/intractable)\n", | ^ sim4dbutils/filterPolishes.C:279:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 279 | fprintf(stderr, " Filter: %6.2f%% ("uint64FMT" matches processed)\n", | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/filterPolishes sim4dbutils/filterPolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/headPolishes.o -c sim4dbutils/headPolishes.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/headPolishes.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/headPolishes sim4dbutils/headPolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/mappedCoverage.o -c sim4dbutils/mappedCoverage.C In file included from /<>/libbio/bio.h:4, from sim4dbutils/mappedCoverage.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/mappedCoverage.C:7: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/mappedCoverage.C:94:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 94 | fprintf(stderr, "Found "uint32FMT" sequences in the input file.\n", covMax); | ^ sim4dbutils/mappedCoverage.C:130:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "ERROR: Found iid "uint32FMT", but only allocated "uint32FMT" places!\n", | ^ sim4dbutils/mappedCoverage.C:130:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "ERROR: Found iid "uint32FMT", but only allocated "uint32FMT" places!\n", | ^ sim4dbutils/mappedCoverage.C:153:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 153 | fprintf(stderr, "ERROR: Found iid "uint32FMT", but only allocated "uint32FMT" places!\n", | ^ sim4dbutils/mappedCoverage.C:153:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 153 | fprintf(stderr, "ERROR: Found iid "uint32FMT", but only allocated "uint32FMT" places!\n", | ^ sim4dbutils/mappedCoverage.C:219:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 219 | fprintf(stderr, "ERROR: range "uint32FMT"-"uint32FMT" out of bounds (seqLen = "uint32FMT")\n", | ^ sim4dbutils/mappedCoverage.C:219:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 219 | fprintf(stderr, "ERROR: range "uint32FMT"-"uint32FMT" out of bounds (seqLen = "uint32FMT")\n", | ^ sim4dbutils/mappedCoverage.C:219:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 219 | fprintf(stderr, "ERROR: range "uint32FMT"-"uint32FMT" out of bounds (seqLen = "uint32FMT")\n", | ^ sim4dbutils/mappedCoverage.C:242:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 242 | fprintf(C, uint32FMT"\t"uint32FMT"\t%5.3f\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/mappedCoverage.C:242:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 242 | fprintf(C, uint32FMT"\t"uint32FMT"\t%5.3f\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/mappedCoverage.C:242:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 242 | fprintf(C, uint32FMT"\t"uint32FMT"\t%5.3f\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/mappedCoverage.C: In function ‘int main(int, char**)’: sim4dbutils/mappedCoverage.C:106:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 106 | fgets(inLine, 1024, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/mappedCoverage sim4dbutils/mappedCoverage.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/mergePolishes.o -c sim4dbutils/mergePolishes.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from sim4dbutils/mergePolishes.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/mergePolishes.C: In function ‘main’: sim4dbutils/mergePolishes.C:139:10: warning: ‘operator delete(void*, unsigned long)’ called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 139 | delete inMatch; | ^~~~~~~ sim4dbutils/mergePolishes.C:28:62: note: returned from ‘operator new[](unsigned long)’ 28 | sim4polishReader **inMatch = new sim4polishReader * [argc]; | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/mergePolishes sim4dbutils/mergePolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/parseSNP.o -c sim4dbutils/parseSNP.C In file included from /<>/libbio/bio.h:4, from sim4dbutils/parseSNP.C:9: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/parseSNP.C:10: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/parseSNP.C:229:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 229 | fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", | ^ sim4dbutils/parseSNP.C:229:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 229 | fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", | ^ sim4dbutils/parseSNP.C:229:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 229 | fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", | ^ sim4dbutils/parseSNP.C:229:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 229 | fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", | ^ sim4dbutils/parseSNP.C:229:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 229 | fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", | ^ sim4dbutils/parseSNP.C:229:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 229 | fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", | ^ sim4dbutils/parseSNP.C:229:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 229 | fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", | ^ sim4dbutils/parseSNP.C:269:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 269 | fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", | ^ sim4dbutils/parseSNP.C:269:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 269 | fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", | ^ sim4dbutils/parseSNP.C:269:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 269 | fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", | ^ sim4dbutils/parseSNP.C:269:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 269 | fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", | ^ sim4dbutils/parseSNP.C:269:98: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 269 | fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", | ^ sim4dbutils/parseSNP.C:269:113: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 269 | fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", | ^ sim4dbutils/parseSNP.C:269:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 269 | fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", | ^ sim4dbutils/parseSNP.C:269:143: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 269 | fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", | ^ sim4dbutils/parseSNP.C:538:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 538 | fprintf(stderr, "ERROR: Polishes not sorted by SNP idx! this="uint32FMT", looking for "uint32FMT"\n", | ^ sim4dbutils/parseSNP.C:538:80: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 538 | fprintf(stderr, "ERROR: Polishes not sorted by SNP idx! this="uint32FMT", looking for "uint32FMT"\n", | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/parseSNP sim4dbutils/parseSNP.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/pickBestPolish.o -c sim4dbutils/pickBestPolish.C In file included from /<>/libbio/bio.h:4, from sim4dbutils/pickBestPolish.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/pickBestPolish.C:6: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/pickBestPolish.C:35:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 35 | fprintf(O, uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(4)" "uint32FMTW(4), | ^ sim4dbutils/pickBestPolish.C:35:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 35 | fprintf(O, uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(4)" "uint32FMTW(4), | ^ sim4dbutils/pickBestPolish.C:35:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 35 | fprintf(O, uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(4)" "uint32FMTW(4), | ^ sim4dbutils/pickBestPolish.C:39:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 39 | fprintf(O, " ("uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(3)")", | ^ sim4dbutils/pickBestPolish.C:39:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 39 | fprintf(O, " ("uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(3)")", | ^ sim4dbutils/pickBestPolish.C:39:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 39 | fprintf(O, " ("uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(3)")", | ^ sim4dbutils/pickBestPolish.C:39:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 39 | fprintf(O, " ("uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(3)")", | ^ sim4dbutils/pickBestPolish.C:39:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 39 | fprintf(O, " ("uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(3)")", | ^ sim4dbutils/pickBestPolish.C:69:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 69 | fprintf(stderr, "Picking Best for estID="uint32FMT" with %5d choices.\r", p[0]->_estID, pNum); | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/pickBestPolish sim4dbutils/pickBestPolish.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/pickBestPair.o -c sim4dbutils/pickBestPair.C In file included from /<>/libbio/bio.h:4, from sim4dbutils/pickBestPair.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/pickBestPair.C:6: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/pickBestPair.C:546:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 546 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:546:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 546 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:546:52: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 546 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:546:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 546 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:546:80: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 546 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:546:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 546 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:546:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 546 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:546:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 546 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:569:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 569 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:569:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 569 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:569:52: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 569 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:569:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 569 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:569:80: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 569 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:569:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 569 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:569:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 569 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:569:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 569 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:584:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 584 | fprintf(STA, "alignments: "uint32FMT" "uint32FMT"\n", mr1END, mr2END); | ^ sim4dbutils/pickBestPair.C:584:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 584 | fprintf(STA, "alignments: "uint32FMT" "uint32FMT"\n", mr1END, mr2END); | ^ sim4dbutils/pickBestPair.C: In function ‘int main(int, char**)’: sim4dbutils/pickBestPair.C:266:19: warning: variable ‘minIdent’ set but not used [-Wunused-but-set-variable] 266 | double minIdent = 0; | ^~~~~~~~ sim4dbutils/pickBestPair.C:267:19: warning: variable ‘minLength’ set but not used [-Wunused-but-set-variable] 267 | double minLength = 0; | ^~~~~~~~~ sim4dbutils/pickBestPair.C:268:19: warning: variable ‘minCoverage’ set but not used [-Wunused-but-set-variable] 268 | double minCoverage = 0; | ^~~~~~~~~~~ sim4dbutils/pickBestPair.C: In function ‘bool readMR(FILE*, mapResult&)’: sim4dbutils/pickBestPair.C:54:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 54 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:57:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 57 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C: In function ‘bool readMRcoords(FILE*, mapResult&)’: sim4dbutils/pickBestPair.C:123:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 123 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:124:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 124 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:125:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 125 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:126:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:129:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 129 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C: In function ‘bool readMRcoords(FILE*, mapResult&, bool&)’: sim4dbutils/pickBestPair.C:189:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 189 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:190:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 190 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:191:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 191 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:192:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 192 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:195:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 195 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C: In function ‘int main(int, char**)’: sim4dbutils/pickBestPair.C:354:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 354 | fgets(LL, 10240, IN); | ~~~~~^~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:365:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 365 | fgets(LL, 10240, IN); | ~~~~~^~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/pickBestPair sim4dbutils/pickBestPair.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/pickUniquePolish.o -c sim4dbutils/pickUniquePolish.C In file included from /<>/libbio/bio.h:4, from sim4dbutils/pickUniquePolish.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/pickUniquePolish.C:7: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/pickUniquePolish sim4dbutils/pickUniquePolish.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/plotCoverageVsIdentity.o -c sim4dbutils/plotCoverageVsIdentity.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/plotCoverageVsIdentity.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/plotCoverageVsIdentity.C:32:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(S, uint32FMT" "uint32FMT"\n", p->_percentIdentity, p->_querySeqIdentity); | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/plotCoverageVsIdentity sim4dbutils/plotCoverageVsIdentity.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/removeDuplicate.o -c sim4dbutils/removeDuplicate.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/removeDuplicate.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/removeDuplicate sim4dbutils/removeDuplicate.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/sortPolishes.o -c sim4dbutils/sortPolishes.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/sortPolishes.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/sortPolishes.C:87:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 87 | fprintf(stderr, "Read: "uint32FMTW(8)" polishes -- "uint32FMTW(5)" temporary files -- "uint64FMTW(5)"MB / "uint64FMTW(5)"MB -- "uint64FMTW(5)" bytes/polish\r", | ^ sim4dbutils/sortPolishes.C:87:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 87 | fprintf(stderr, "Read: "uint32FMTW(8)" polishes -- "uint32FMTW(5)" temporary files -- "uint64FMTW(5)"MB / "uint64FMTW(5)"MB -- "uint64FMTW(5)" bytes/polish\r", | ^ sim4dbutils/sortPolishes.C:87:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 87 | fprintf(stderr, "Read: "uint32FMTW(8)" polishes -- "uint32FMTW(5)" temporary files -- "uint64FMTW(5)"MB / "uint64FMTW(5)"MB -- "uint64FMTW(5)" bytes/polish\r", | ^ sim4dbutils/sortPolishes.C:87:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 87 | fprintf(stderr, "Read: "uint32FMTW(8)" polishes -- "uint32FMTW(5)" temporary files -- "uint64FMTW(5)"MB / "uint64FMTW(5)"MB -- "uint64FMTW(5)" bytes/polish\r", | ^ sim4dbutils/sortPolishes.C:87:125: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 87 | fprintf(stderr, "Read: "uint32FMTW(8)" polishes -- "uint32FMTW(5)" temporary files -- "uint64FMTW(5)"MB / "uint64FMTW(5)"MB -- "uint64FMTW(5)" bytes/polish\r", | ^ sim4dbutils/sortPolishes.C: In function ‘sim4polish* savePolish(sim4polish*, uint64*)’: sim4dbutils/sortPolishes.C:39:9: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘class sim4polish’; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 39 | memcpy(r, q, sizeof(sim4polish)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polish.H:99:7: note: ‘class sim4polish’ declared here 99 | class sim4polish { | ^~~~~~~~~~ sim4dbutils/sortPolishes.C:59:9: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘class sim4polishExon’; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 59 | memcpy(r->_exons, q->_exons, sizeof(sim4polishExon) * q->_numExons); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polish.H:49:7: note: ‘class sim4polishExon’ declared here 49 | class sim4polishExon { | ^~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/sortPolishes sim4dbutils/sortPolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/summarizePolishes.o -c sim4dbutils/summarizePolishes.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from sim4dbutils/summarizePolishes.C:4: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/summarizePolishes.C:167:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 167 | fprintf(stderr, "numSeqs: "uint32FMT"\n", numSeqs); | ^ sim4dbutils/summarizePolishes.C:169:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 169 | fprintf(stderr, "ids: "uint32FMT" -- ", idLen); | ^ sim4dbutils/summarizePolishes.C:171:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stderr, " "uint32FMT"", id[i]); | ^ sim4dbutils/summarizePolishes.C:173:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 173 | fprintf(stderr, "cvs: "uint32FMT" -- ", cvLen); | ^ sim4dbutils/summarizePolishes.C:175:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 175 | fprintf(stderr, " "uint32FMT"", cv[i]); | ^ sim4dbutils/summarizePolishes.C:244:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 244 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ sim4dbutils/summarizePolishes.C:244:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 244 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ sim4dbutils/summarizePolishes.C:244:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 244 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ sim4dbutils/summarizePolishes.C:244:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 244 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ sim4dbutils/summarizePolishes.C:244:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 244 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ sim4dbutils/summarizePolishes.C:247:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 247 | fprintf(stdout, uint32FMTW(3)" "uint32FMTW(3)": mapped="uint32FMTW(8)" notmapped="uint32FMTW(8)" est="uint32FMTW(8)" gen="uint32FMTW(8)"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ sim4dbutils/summarizePolishes.C:247:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 247 | fprintf(stdout, uint32FMTW(3)" "uint32FMTW(3)": mapped="uint32FMTW(8)" notmapped="uint32FMTW(8)" est="uint32FMTW(8)" gen="uint32FMTW(8)"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ sim4dbutils/summarizePolishes.C:247:78: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 247 | fprintf(stdout, uint32FMTW(3)" "uint32FMTW(3)": mapped="uint32FMTW(8)" notmapped="uint32FMTW(8)" est="uint32FMTW(8)" gen="uint32FMTW(8)"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ sim4dbutils/summarizePolishes.C:247:104: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 247 | fprintf(stdout, uint32FMTW(3)" "uint32FMTW(3)": mapped="uint32FMTW(8)" notmapped="uint32FMTW(8)" est="uint32FMTW(8)" gen="uint32FMTW(8)"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ sim4dbutils/summarizePolishes.C:247:125: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 247 | fprintf(stdout, uint32FMTW(3)" "uint32FMTW(3)": mapped="uint32FMTW(8)" notmapped="uint32FMTW(8)" est="uint32FMTW(8)" gen="uint32FMTW(8)"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/summarizePolishes sim4dbutils/summarizePolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/uniqPolishes.o -c sim4dbutils/uniqPolishes.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/uniqPolishes.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/uniqPolishes sim4dbutils/uniqPolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/vennPolishes.o -c sim4dbutils/vennPolishes.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from sim4dbutils/vennPolishes.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/vennPolishes.C:115:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 115 | fprintf(stderr, "WARNING: You gave me "uint32FMT" files! That's pretty big. I don't know\n", numFiles); | ^ sim4dbutils/vennPolishes.C:175:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 175 | fprintf(stdout, " "uint32FMTW(8)" ", counts[index]); | ^ sim4dbutils/vennPolishes.C:183:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 183 | fprintf(stdout, "%c = ("uint32FMTW(8)" total) %s\n", 'A' + (char)i, sizes[i], argv[i+numArgs]); | ^ sim4dbutils/vennPolishes.C:189:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 189 | fprintf(stdout, "] "uint32FMT"\n", counts[index]); | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/vennPolishes sim4dbutils/vennPolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/realignPolishes.o -c sim4dbutils/realignPolishes.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from sim4dbutils/realignPolishes.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/realignPolishes.C:160:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 160 | "MERGE: "uint32FMTW(4)"-"uint32FMTW(4)" (%6.2f,%6.2f) "uint32FMTW(4)"-"uint32FMTW(4) | ^ sim4dbutils/realignPolishes.C:160:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 160 | "MERGE: "uint32FMTW(4)"-"uint32FMTW(4)" (%6.2f,%6.2f) "uint32FMTW(4)"-"uint32FMTW(4) | ^ sim4dbutils/realignPolishes.C:160:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 160 | "MERGE: "uint32FMTW(4)"-"uint32FMTW(4)" (%6.2f,%6.2f) "uint32FMTW(4)"-"uint32FMTW(4) | ^ sim4dbutils/realignPolishes.C:160:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 160 | "MERGE: "uint32FMTW(4)"-"uint32FMTW(4)" (%6.2f,%6.2f) "uint32FMTW(4)"-"uint32FMTW(4) | ^ sim4dbutils/realignPolishes.C:161:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 161 | " and "uint32FMTW(8)"-"uint32FMTW(8)" (%6.2f,%6.2f) "uint32FMTW(8)"-"uint32FMTW(8)"\n", | ^ sim4dbutils/realignPolishes.C:161:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 161 | " and "uint32FMTW(8)"-"uint32FMTW(8)" (%6.2f,%6.2f) "uint32FMTW(8)"-"uint32FMTW(8)"\n", | ^ sim4dbutils/realignPolishes.C:161:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 161 | " and "uint32FMTW(8)"-"uint32FMTW(8)" (%6.2f,%6.2f) "uint32FMTW(8)"-"uint32FMTW(8)"\n", | ^ sim4dbutils/realignPolishes.C:161:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 161 | " and "uint32FMTW(8)"-"uint32FMTW(8)" (%6.2f,%6.2f) "uint32FMTW(8)"-"uint32FMTW(8)"\n", | ^ sim4dbutils/realignPolishes.C:243:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 243 | fprintf(stdout, "WARNING: CHANGED! "uint32FMT" -> "uint32FMT"\n", nm, p->_numMatches); | ^ sim4dbutils/realignPolishes.C:243:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 243 | fprintf(stdout, "WARNING: CHANGED! "uint32FMT" -> "uint32FMT"\n", nm, p->_numMatches); | ^ sim4dbutils/realignPolishes.C:248:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 248 | fprintf(mergeLog, "MERGED\tEST\t"uint32FMT"\tfrom\t%8.3f\t%8.3f\tto\t%8.3f\t%8.3f\n", | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/realignPolishes sim4dbutils/realignPolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/removeRedundant.o -c sim4dbutils/removeRedundant.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from sim4dbutils/removeRedundant.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/removeRedundant.C:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "IID="uint32FMTW(8)" -- overlap:"uint32FMT" noOverlap:"uint32FMT"\r", | ^ sim4dbutils/removeRedundant.C:107:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "IID="uint32FMTW(8)" -- overlap:"uint32FMT" noOverlap:"uint32FMT"\r", | ^ sim4dbutils/removeRedundant.C:107:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "IID="uint32FMTW(8)" -- overlap:"uint32FMT" noOverlap:"uint32FMT"\r", | ^ sim4dbutils/removeRedundant.C:212:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "\nNOT A PERFECT CLIQUE! Found "uint32FMT" overlaps, wanted "uint32FMT" in the clique.\n", | ^ sim4dbutils/removeRedundant.C:212:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "\nNOT A PERFECT CLIQUE! Found "uint32FMT" overlaps, wanted "uint32FMT" in the clique.\n", | ^ sim4dbutils/removeRedundant.C:260:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 260 | fprintf(stderr, "\nmatches withOvl:"uint32FMT" withoutOvl:"uint32FMT"\n", | ^ sim4dbutils/removeRedundant.C:260:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 260 | fprintf(stderr, "\nmatches withOvl:"uint32FMT" withoutOvl:"uint32FMT"\n", | ^ sim4dbutils/removeRedundant.C:262:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 262 | fprintf(stderr, "not perfect clique:"uint32FMT"\n", notPerfectClique); | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/removeRedundant sim4dbutils/removeRedundant.o sim4dbutils/s4p_overlap.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm sim4dbutils/s4p_overlap.H:18:10: warning: ‘findOverlap’ violates the C++ One Definition Rule [-Wodr] 18 | olap_t findOverlap(sim4polish *A, sim4polish *B); | ^ sim4dbutils/s4p_overlap.C:10:1: note: return value type mismatch 10 | findOverlap(sim4polish *A, sim4polish *B) { | ^ sim4dbutils/s4p_overlap.C:10:1: note: type ‘uint32’ should match type ‘olap_t’ sim4dbutils/s4p_overlap.C:10:1: note: ‘findOverlap’ was previously declared here sim4dbutils/s4p_overlap.C:10:1: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/reportAlignmentDifferences.o -c sim4dbutils/reportAlignmentDifferences.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/reportAlignmentDifferences.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/reportAlignmentDifferences.C: In function ‘int main(int, char**)’: sim4dbutils/reportAlignmentDifferences.C:155:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 155 | if (e->_estAlignment[aPos] != '-') | ^ sim4dbutils/reportAlignmentDifferences.C:201:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 201 | system(gnuCmd); | ~~~~~~^~~~~~~~ sim4dbutils/reportAlignmentDifferences.C:200:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4086 [-Wformat-overflow=] 200 | sprintf(gnuCmd, "gnuplot < %s", gnuName); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:964, from sim4dbutils/reportAlignmentDifferences.C:1: In function ‘sprintf’, inlined from ‘main’ at sim4dbutils/reportAlignmentDifferences.C:200:10: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4dbutils/reportAlignmentDifferences sim4dbutils/reportAlignmentDifferences.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libsim4/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4db/sim4th.o -c sim4db/sim4th.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from sim4db/sim4th.C:34: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4db/sim4th.C:327:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 327 | sprintf(str, "%s -Y "uint32FMT" "uint32FMT"\n", | ^ sim4db/sim4th.C:327:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 327 | sprintf(str, "%s -Y "uint32FMT" "uint32FMT"\n", | ^ sim4db/sim4th.C: In function ‘void writer(void*, void*)’: sim4db/sim4th.C:316:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 316 | write(fOutput, o, strlen(o) * sizeof(char)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sim4db/sim4th.C:332:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 332 | write(fYesNo, str, strlen(str) * sizeof(char)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o sim4db/sim4db sim4db/sim4th.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm In function ‘strncpy’, inlined from ‘Permute_String’ at /usr/src/kmer-0~20150903+r2013-8build4/libsim4/sim4core/glimmerSplice.C:235:12, inlined from ‘Score_Window.isra’ at /usr/src/kmer-0~20150903+r2013-8build4/libsim4/sim4core/glimmerSplice.C:368:23: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:95:34: warning: ‘__builtin_strncpy’ specified size between 18446744071562067968 and 0 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/snapper2.o -c snapper/snapper2.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/snapper2.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from snapper/snapper2.H:20: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.C:59:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 59 | fprintf(F, "%6.4f %6.4f %6.4f %6.4f %6.4f "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)"\n", | ^ snapper/snapper2.C:59:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 59 | fprintf(F, "%6.4f %6.4f %6.4f %6.4f %6.4f "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)"\n", | ^ snapper/snapper2.C:59:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 59 | fprintf(F, "%6.4f %6.4f %6.4f %6.4f %6.4f "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)"\n", | ^ snapper/snapper2.C:59:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 59 | fprintf(F, "%6.4f %6.4f %6.4f %6.4f %6.4f "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)"\n", | ^ snapper/snapper2.C:248:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 248 | fprintf(stderr, "WARNING: Found "uint32FMT" queries shorter than minimum reportable size (-discardexonlength = "uint32FMT")\n", | ^ snapper/snapper2.C:248:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 248 | fprintf(stderr, "WARNING: Found "uint32FMT" queries shorter than minimum reportable size (-discardexonlength = "uint32FMT")\n", | ^ snapper/snapper2.C:254:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 254 | fprintf(stderr, "WARNING: Found "uint32FMT" queries longer than maximum size ("uint32FMT")\n", | ^ snapper/snapper2.C:254:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 254 | fprintf(stderr, "WARNING: Found "uint32FMT" queries longer than maximum size ("uint32FMT")\n", | ^ snapper/snapper2.C:295:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 295 | fprintf(stderr, "Created "uint32FMT" filters (out of "uint32FMT" available) to test/validate.\n", | ^ snapper/snapper2.C:295:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 295 | fprintf(stderr, "Created "uint32FMT" filters (out of "uint32FMT" available) to test/validate.\n", | ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 419 | } catch (std::bad_alloc) { | ^~~~~~~~~ snapper/snapper2.C: In function ‘void writerThread(void*, void*)’: snapper/snapper2.C:155:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | write(resultFILE, qry->theOutput, sizeof(char) * qry->theOutputLen); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/logMsg.H: In member function ‘void logMsg::write(int, const char*)’: /<>/libutil/logMsg.H:85:12: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 85 | ::write(file, _log, sizeof(char) * _logLen); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/configuration.o -c snapper/configuration.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/configuration.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from snapper/snapper2.H:20: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/configuration.C:205:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 205 | fprintf(stderr, "ERROR: Invalid afLength "uint32FMT", should be < 64.\n", _afLength), err++; | ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 419 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/thr-search.o -c snapper/thr-search.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/thr-search.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from snapper/snapper2.H:20: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 419 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/thr-filter.o -c snapper/thr-filter.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/thr-filter.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from snapper/snapper2.H:20: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 419 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/thr-polish.o -c snapper/thr-polish.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/thr-polish.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from snapper/snapper2.H:20: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/thr-polish.C:311:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 311 | fprintf(stderr, "doPolish()-- Can't reallocate space for the output string ("uint32FMT" bytes) in thread "uint64FMT"\n", qry->theOutputMax, state->threadID); | ^ snapper/thr-polish.C:311:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 311 | fprintf(stderr, "doPolish()-- Can't reallocate space for the output string ("uint32FMT" bytes) in thread "uint64FMT"\n", qry->theOutputMax, state->threadID); | ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 419 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/thr-polish-dp.o -c snapper/thr-polish-dp.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/thr-polish-dp.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from snapper/snapper2.H:20: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/thr-polish-dp.C:89:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 89 | fprintf(stderr, "dpMatrix-- reallocate to "uint32FMT" x "uint32FMT"\n", aMax, bMax); | ^ snapper/thr-polish-dp.C:89:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 89 | fprintf(stderr, "dpMatrix-- reallocate to "uint32FMT" x "uint32FMT"\n", aMax, bMax); | ^ snapper/thr-polish-dp.C:441:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 441 | fprintf(stderr, "doPolish()-- Can't reallocate space for the output string ("uint32FMT" bytes) in thread "uint64FMT"\n", qry->theOutputMax, state->threadID); | ^ snapper/thr-polish-dp.C:441:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 441 | fprintf(stderr, "doPolish()-- Can't reallocate space for the output string ("uint32FMT" bytes) in thread "uint64FMT"\n", qry->theOutputMax, state->threadID); | ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 419 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/hitMatrix.o -c snapper/hitMatrix.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/hitMatrix.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from snapper/snapper2.H:20: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/hitMatrix.C:385:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 385 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT".\n", theHitsPos, theHitsMax); | ^ snapper/hitMatrix.C:385:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 385 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT".\n", theHitsPos, theHitsMax); | ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 419 | } catch (std::bad_alloc) { | ^~~~~~~~~ snapper/hitMatrix.C: In member function ‘void hitMatrix::filter(char, double, uint32, aHit*&, uint32&, uint32&)’: snapper/hitMatrix.C:383:23: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 383 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/hitMatrix-sort.o -c snapper/hitMatrix-sort.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/hitMatrix-sort.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from snapper/snapper2.H:20: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 419 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o snapper/snapper2 snapper/snapper2.o snapper/configuration.o snapper/thr-search.o snapper/thr-filter.o snapper/thr-polish.o snapper/thr-polish-dp.o snapper/hitMatrix.o snapper/hitMatrix-sort.o /<>/libsim4/libsim4.a /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm In function ‘strncpy’, inlined from ‘Permute_String’ at /usr/src/kmer-0~20150903+r2013-8build4/libsim4/sim4core/glimmerSplice.C:235:12, inlined from ‘Score_Window.isra’ at /usr/src/kmer-0~20150903+r2013-8build4/libsim4/sim4core/glimmerSplice.C:368:23: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:95:34: warning: ‘__builtin_strncpy’ specified size between 18446744071562067968 and 0 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o tapper/tagger.o -c tapper/tagger.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from tapper/tapperTag.H:1, from tapper/tagger.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ tapper/tapperTag.H:204:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 204 | fprintf(stderr, "tapperTagFile()-- ERROR! Tag file was built with TAPPER_TAG_WORDS="uint32FMT", but code has %d.\n", | ^ In file included from tapper/tagger.C:2: tapper/tapperResult.H:41:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:155: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:168: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:183: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:198: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:228: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:116:2: warning: #warning do not know real tag length [-Wcpp] 116 | #warning do not know real tag length | ^~~~~~~ tapper/tapperResult.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:187:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:114: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:151: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:163: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:175: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:187: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:200: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:230: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:242: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:224:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:146: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:159: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:172: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ In file included from tapper/tagger.C:4: tapper/tapperHit.H:17:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tagger.C:151:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 151 | fprintf(stdout, "%s\tlength\t"uint32FMT"\n", tagfile, TF->metaData()->tagSize()); | ^ tapper/tagger.C:152:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 152 | fprintf(stdout, "%s\tnumMates\t"uint64FMT"\n", tagfile, TF->numberOfMatePairs()); | ^ tapper/tagger.C:153:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 153 | fprintf(stdout, "%s\tmean\t"uint32FMT"\n", tagfile, TF->metaData()->mean()); | ^ tapper/tagger.C:154:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 154 | fprintf(stdout, "%s\tstddev\t"uint32FMT"\n", tagfile, TF->metaData()->stddev()); | ^ tapper/tagger.C:157:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | fprintf(stdout, "%s\tlength\t"uint32FMT"\n", tagfile, TF->metaData()->tagSize()); | ^ tapper/tagger.C:158:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 158 | fprintf(stdout, "%s\tnumTags\t"uint64FMT"\n", tagfile, TF->numberOfFragmentTags()); | ^ tapper/tagger.C:182:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 182 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:182:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 182 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:182:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 182 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:182:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 182 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:182:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 182 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:182:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 182 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:182:104: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 182 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:182:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 182 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:191:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 191 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:191:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 191 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:191:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 191 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:191:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 191 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:362:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 362 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t0\t"uint32FMT"\t%c\t%s%s\t%s\n", | ^ tapper/tagger.C:362:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 362 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t0\t"uint32FMT"\t%c\t%s%s\t%s\n", | ^ tapper/tagger.C:362:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 362 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t0\t"uint32FMT"\t%c\t%s%s\t%s\n", | ^ tapper/tagger.C:362:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 362 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t0\t"uint32FMT"\t%c\t%s%s\t%s\n", | ^ tapper/tagger.C:362:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 362 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t0\t"uint32FMT"\t%c\t%s%s\t%s\n", | ^ tapper/tapperResult.H: In member function ‘void tapperResultIndex::print(FILE*)’: tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 11 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 12 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 13 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 14 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 15 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 16 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 17 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 18 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 19 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~ | | | int tapper/tapperHit.H: In member function ‘char* tapperHit::printHit(char*, uint64)’: tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 9 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~~~~~ | | | int tapper/tagger.C: In function ‘bool readTag(uint32, FILE*, FILE*, tapperTag*)’: tapper/tagger.C:52:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 52 | fgets(seqhdr, 1024, seq); | ~~~~~^~~~~~~~~~~~~~~~~~~ tapper/tagger.C:54:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 54 | fgets(seqhdr, 1024, seq); | ~~~~~^~~~~~~~~~~~~~~~~~~ tapper/tagger.C:55:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | fgets(seqseq, 1024, seq); | ~~~~~^~~~~~~~~~~~~~~~~~~ tapper/tagger.C:57:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 57 | fgets(qlthdr, 1024, qlt); | ~~~~~^~~~~~~~~~~~~~~~~~~ tapper/tagger.C:59:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 59 | fgets(qlthdr, 1024, qlt); | ~~~~~^~~~~~~~~~~~~~~~~~~ tapper/tagger.C:60:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 60 | fgets(qltseq, 1024, qlt); | ~~~~~^~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o tapper/tagger tapper/tagger.o /<>/libsim4/libsim4.a /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o tapper/tapper.o -c tapper/tapper.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from tapper/tapperTag.H:1, from tapper/tapper.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ tapper/tapperTag.H:204:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 204 | fprintf(stderr, "tapperTagFile()-- ERROR! Tag file was built with TAPPER_TAG_WORDS="uint32FMT", but code has %d.\n", | ^ In file included from tapper/tapper.C:2: tapper/tapperResult.H:41:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:155: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:168: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:183: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:198: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:228: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:116:2: warning: #warning do not know real tag length [-Wcpp] 116 | #warning do not know real tag length | ^~~~~~~ tapper/tapperResult.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:187:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:114: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:151: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:163: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:175: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:187: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:200: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:230: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:242: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:224:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:146: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:159: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:172: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ In file included from tapper/tapper.C:4: tapper/tapperHit.H:17:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ In file included from tapper/tapperGlobalData.H:1, from tapper/tapper.C:5: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ tapper/tapperGlobalData.H:109:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:109:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:144:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tapperGlobalData.H:144:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tapper.C:633:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 633 | fprintf(stderr, "Reallocate t->numHappiesMax to "uint32FMT"\n", t->numHappiesMax); | ^ tapper/tapper.C:1048:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1048 | fprintf(stderr, "sizeof(tapperResultIndex) -- "sizetFMT"\n", sizeof(tapperResultIndex)); | ^ tapper/tapper.C:1049:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1049 | fprintf(stderr, "sizeof(tapperResultQV) -- "sizetFMT"\n", sizeof(tapperResultQV)); | ^ tapper/tapper.C:1050:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1050 | fprintf(stderr, "sizeof(tapperResultFragment) -- "sizetFMT"\n", sizeof(tapperResultFragment)); | ^ tapper/tapper.C:1051:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1051 | fprintf(stderr, "sizeof(tapperResultMated) -- "sizetFMT"\n", sizeof(tapperResultMated)); | ^ tapper/tapper.C:1052:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1052 | fprintf(stderr, "sizeof(tapperResultTangled) -- "sizetFMT"\n", sizeof(tapperResultTangled)); | ^ tapper/tapper.C:1053:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1053 | fprintf(stderr, "sizeof(tapperHit) -- "sizetFMT"\n", sizeof(tapperHit)); | ^ tapper/tapper.C:1054:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1054 | fprintf(stderr, "sizeof(tapperTag) -- "sizetFMT"\n", sizeof(tapperTag)); | ^ tapper/tapper.C:1124:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1124 | fprintf(stderr, " all alignments. The default is "uint32FMT".\n", g->repeatThreshold); | ^ tapper/tapperResult.H: In member function ‘void tapperResultIndex::print(FILE*)’: tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 11 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 12 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 13 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 14 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 15 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 16 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 17 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 18 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 19 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~ | | | int tapper/tapperHit.H: In member function ‘char* tapperHit::printHit(char*, uint64)’: tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 9 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~~~~~ | | | int tapper/tapper.C: In member function ‘bool tapperHit::alignToReference(tapperGlobalData*, uint32, uint32, char*, uint32)’: tapper/tapper.C:399:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 399 | if (_colorMismatch + _colorInconsistent > g->maxColorError) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ tapper/tapper.C:415:23: warning: comparison of integer expressions of different signedness: ‘uint32’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 415 | for (uint32 ti=0; ti<_len-1; ti++) { | ~~^~~~~~~ In file included from /<>/libutil/recordFile.H:6, from /<>/libutil/util++.H:39: tapper/tapper.C:468:13: warning: comparison of integer expressions of different signedness: ‘uint32’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 468 | assert(nn == _colorMismatch + _colorInconsistent); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o tapper/tapper tapper/tapper.o /<>/libsim4/libsim4.a /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm In function ‘strncpy’, inlined from ‘alignToReference’ at tapper/tapper.C:203:12, inlined from ‘tapperWorker_addHits’ at tapper/tapper.C:514:29: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:95:34: warning: ‘__builtin___strncpy_chk’ specified bound 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^ In member function ‘alignToReference’, inlined from ‘tapperWorker_addHits’ at tapper/tapper.C:514:29: tapper/tapper.C:204:22: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 204 | _refACGT[_len-1] = 0; | ^ tapper/tapperHit.H: In function ‘tapperWorker_addHits’: tapper/tapperHit.H:227:11: note: at offset -1 into destination object ‘_refACGT’ of size 32 227 | char _refACGT[TAG_LEN_MAX]; | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o tapper/tapperconvert.o -c tapper/tapperconvert.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from tapper/tapperTag.H:1, from tapper/tapperconvert.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ tapper/tapperTag.H:204:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 204 | fprintf(stderr, "tapperTagFile()-- ERROR! Tag file was built with TAPPER_TAG_WORDS="uint32FMT", but code has %d.\n", | ^ In file included from tapper/tapperconvert.C:2: tapper/tapperResult.H:41:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:155: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:168: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:183: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:198: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:228: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:116:2: warning: #warning do not know real tag length [-Wcpp] 116 | #warning do not know real tag length | ^~~~~~~ tapper/tapperResult.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:187:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:114: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:151: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:163: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:175: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:187: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:200: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:230: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:242: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:224:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:146: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:159: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:172: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ In file included from tapper/tapperconvert.C:4: tapper/tapperHit.H:17:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ In file included from tapper/tapperGlobalData.H:1, from tapper/tapperconvert.C:5: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ tapper/tapperGlobalData.H:109:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:109:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:144:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tapperGlobalData.H:144:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tapperResult.H: In member function ‘void tapperResultIndex::print(FILE*)’: tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 11 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 12 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 13 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 14 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 15 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 16 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 17 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 18 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 19 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~ | | | int tapper/tapperHit.H: In member function ‘char* tapperHit::printHit(char*, uint64)’: tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 9 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~~~~~ | | | int g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o tapper/tapperconvert tapper/tapperconvert.o /<>/libsim4/libsim4.a /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o tapper/tappermerge.o -c tapper/tappermerge.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from tapper/tapperTag.H:1, from tapper/tappermerge.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ tapper/tapperTag.H:204:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 204 | fprintf(stderr, "tapperTagFile()-- ERROR! Tag file was built with TAPPER_TAG_WORDS="uint32FMT", but code has %d.\n", | ^ In file included from tapper/tappermerge.C:2: tapper/tapperResult.H:41:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:155: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:168: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:183: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:198: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:228: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:116:2: warning: #warning do not know real tag length [-Wcpp] 116 | #warning do not know real tag length | ^~~~~~~ tapper/tapperResult.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:187:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:114: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:151: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:163: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:175: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:187: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:200: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:230: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:242: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:224:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:146: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:159: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:172: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ In file included from tapper/tappermerge.C:4: tapper/tapperHit.H:17:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ In file included from tapper/tapperGlobalData.H:1, from tapper/tappermerge.C:5: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ tapper/tapperGlobalData.H:109:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:109:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:144:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tapperGlobalData.H:144:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tapperResult.H: In member function ‘void tapperResultIndex::print(FILE*)’: tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 11 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 12 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 13 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 14 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 15 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 16 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 17 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 18 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 19 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~ | | | int tapper/tapperHit.H: In member function ‘char* tapperHit::printHit(char*, uint64)’: tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 9 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~~~~~ | | | int g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o tapper/tappermerge tapper/tappermerge.o /<>/libsim4/libsim4.a /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o tapper/tappersort.o -c tapper/tappersort.C In file included from /<>/libutil/util++.H:4, from tapper/tappersort.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from tapper/tappersort.C:3: tapper/tapperTag.H:204:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 204 | fprintf(stderr, "tapperTagFile()-- ERROR! Tag file was built with TAPPER_TAG_WORDS="uint32FMT", but code has %d.\n", | ^ In file included from tapper/tappersort.C:4: tapper/tapperResult.H:41:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:155: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:168: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:183: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:198: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:228: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:116:2: warning: #warning do not know real tag length [-Wcpp] 116 | #warning do not know real tag length | ^~~~~~~ tapper/tapperResult.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:187:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:114: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:151: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:163: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:175: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:187: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:200: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:230: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:242: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:224:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:146: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:159: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:172: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ In file included from tapper/tappersort.C:6: tapper/tapperHit.H:17:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ In file included from tapper/tapperGlobalData.H:1, from tapper/tappersort.C:7: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ tapper/tapperGlobalData.H:109:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:109:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:144:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tapperGlobalData.H:144:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tappersort.C:148:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | sprintf(filename, "%s."uint32FMTW(03)".tapperAlignment", outputName, outputIndex); | ^ tapper/tappersort.C:150:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 150 | fprintf(stderr, "Writing "uint32FMT" sorted alignments to '%s'\n", aliLen, filename); | ^ tapper/tappersort.C:202:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 202 | fprintf(stderr, "Can fit "uint32FMT" alignments into "uint64FMT" bytes memory; "uint32FMT" bytes each.\n", | ^ tapper/tappersort.C:202:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 202 | fprintf(stderr, "Can fit "uint32FMT" alignments into "uint64FMT" bytes memory; "uint32FMT" bytes each.\n", | ^ tapper/tappersort.C:202:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 202 | fprintf(stderr, "Can fit "uint32FMT" alignments into "uint64FMT" bytes memory; "uint32FMT" bytes each.\n", | ^ tapper/tappersort.C:257:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 257 | sprintf(filename, "%s."uint32FMTW(03)".tapperAlignment", outputName, x); | ^ tapper/tappersort.C:299:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 299 | sprintf(filename, "%s."uint32FMTW(03)".tapperAlignment", outputName, x); | ^ tapper/tapperResult.H: In member function ‘void tapperResultIndex::print(FILE*)’: tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 11 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 12 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 13 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 14 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 15 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 16 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 17 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 18 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 19 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~ | | | int tapper/tapperHit.H: In member function ‘char* tapperHit::printHit(char*, uint64)’: tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 9 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~~~~~ | | | int g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o tapper/tappersort tapper/tappersort.o /<>/libsim4/libsim4.a /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o tapper/tappererrorcorrect.o -c tapper/tappererrorcorrect.C In file included from /<>/libutil/util++.H:4, from tapper/tappererrorcorrect.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from tapper/tappererrorcorrect.C:3: tapper/tapperTag.H:204:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 204 | fprintf(stderr, "tapperTagFile()-- ERROR! Tag file was built with TAPPER_TAG_WORDS="uint32FMT", but code has %d.\n", | ^ In file included from tapper/tappererrorcorrect.C:4: tapper/tapperResult.H:41:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:155: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:168: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:183: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:198: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:228: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:116:2: warning: #warning do not know real tag length [-Wcpp] 116 | #warning do not know real tag length | ^~~~~~~ tapper/tapperResult.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:187:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:114: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:151: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:163: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:175: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:187: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:200: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:230: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:242: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:224:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:146: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:159: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:172: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ In file included from tapper/tappererrorcorrect.C:6: tapper/tapperHit.H:17:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ In file included from tapper/tapperGlobalData.H:1, from tapper/tappererrorcorrect.C:7: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ tapper/tapperGlobalData.H:109:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:109:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:144:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tapperGlobalData.H:144:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tappererrorcorrect.C:25:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 25 | fprintf(stderr, "block "uint32FMT" has "uint32FMT" things.\n", i, alignsLen[i]); | ^ tapper/tappererrorcorrect.C:25:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 25 | fprintf(stderr, "block "uint32FMT" has "uint32FMT" things.\n", i, alignsLen[i]); | ^ tapper/tappererrorcorrect.C:49:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 49 | fprintf(stderr, "block[0] - seq "uint32FMT" pos "uint32FMT"\n", | ^ tapper/tappererrorcorrect.C:49:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 49 | fprintf(stderr, "block[0] - seq "uint32FMT" pos "uint32FMT"\n", | ^ tapper/tappererrorcorrect.C:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "block "uint32FMT" has "uint32FMT" things.\n", alignsMax-1, alignsLen[alignsMax-1]); | ^ tapper/tappererrorcorrect.C:62:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "block "uint32FMT" has "uint32FMT" things.\n", alignsMax-1, alignsLen[alignsMax-1]); | ^ tapper/tappererrorcorrect.C:160:2: warning: #warning need the real read size here [-Wcpp] 160 | #warning need the real read size here | ^~~~~~~ tapper/tappererrorcorrect.C:213:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 213 | fprintf(stdout, "\nALIGN "uint32FMT"-"uint32FMT"\n", winLo, winHi); | ^ tapper/tappererrorcorrect.C:213:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 213 | fprintf(stdout, "\nALIGN "uint32FMT"-"uint32FMT"\n", winLo, winHi); | ^ tapper/tapperResult.H: In member function ‘void tapperResultIndex::print(FILE*)’: tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 11 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 12 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 13 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 14 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 15 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 16 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 17 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 18 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 19 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~ | | | int tapper/tapperHit.H: In member function ‘char* tapperHit::printHit(char*, uint64)’: tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 9 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~~~~~ | | | int tapper/tappererrorcorrect.C: In function ‘int main(int, char**)’: tapper/tappererrorcorrect.C:102:13: warning: variable ‘memoryLimit’ set but not used [-Wunused-but-set-variable] 102 | uint64 memoryLimit = 1024 * 1024 * 1024; | ^~~~~~~~~~~ tapper/tappererrorcorrect.C:141:21: warning: unused variable ‘id’ [-Wunused-variable] 141 | uint16 id[4]; | ^~ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o tapper/tappererrorcorrect tapper/tappererrorcorrect.o /<>/libsim4/libsim4.a /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/driver-existDB.o -c /<>/libkmer/driver-existDB.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/driver-existDB.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/driver-existDB.C:53:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 53 | fprintf(stderr, "mer "uint64HEX" not found : e=%d f=%d g=%d\n", m, ee, ef, eg); | ^ /<>/libkmer/driver-existDB.C:56:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | fprintf(stderr, "mer "uint64HEX" count differs : e=%u f=%u g=%u (exists=%d)\n", m, ce, cf, cg, ee); | ^ /<>/libkmer/driver-existDB.C:65:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | fprintf(stderr, "mer "uint64HEX" : e=%u f=%u g=%u (exists=%d)\n", m, ce, cf, cg, ee); | ^ /<>/libkmer/driver-existDB.C:96:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 96 | fprintf(stderr, "Tried "uint64FMT", didn't find "uint64FMT" merStream mers in the existDB.\n", tried, lost); | ^ /<>/libkmer/driver-existDB.C:96:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 96 | fprintf(stderr, "Tried "uint64FMT", didn't find "uint64FMT" merStream mers in the existDB.\n", tried, lost); | ^ /<>/libkmer/driver-existDB.C:128:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "Found "uint64FMT" mers in the meryl database.\n", expected); | ^ /<>/libkmer/driver-existDB.C:148:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "Expected to find "uint64FMT" mers, but found "uint64FMT" instead.\n", | ^ /<>/libkmer/driver-existDB.C:148:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "Expected to find "uint64FMT" mers, but found "uint64FMT" instead.\n", | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o /<>/libkmer/existDB /<>/libkmer/driver-existDB.o /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/driver-posDB.o -c /<>/libkmer/driver-posDB.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/driver-posDB.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/libkmer/driver-posDB.C:8: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ /<>/libkmer/driver-posDB.C:54:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 54 | fprintf(stdout, "%s @ "uint64FMT"/"uint64FMT": Found "uint64FMT" table entries, and "uint32FMT" matching positions (", | ^ /<>/libkmer/driver-posDB.C:54:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 54 | fprintf(stdout, "%s @ "uint64FMT"/"uint64FMT": Found "uint64FMT" table entries, and "uint32FMT" matching positions (", | ^ /<>/libkmer/driver-posDB.C:54:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 54 | fprintf(stdout, "%s @ "uint64FMT"/"uint64FMT": Found "uint64FMT" table entries, and "uint32FMT" matching positions (", | ^ /<>/libkmer/driver-posDB.C:54:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 54 | fprintf(stdout, "%s @ "uint64FMT"/"uint64FMT": Found "uint64FMT" table entries, and "uint32FMT" matching positions (", | ^ /<>/libkmer/driver-posDB.C:68:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | fprintf(stdout, "Found no matches for mer=%s at pos="uint64FMT"\n", | ^ /<>/libkmer/driver-posDB.C:101:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 101 | fprintf(stdout, "Got a F match for mer=%s at "uint64FMT"/"uint64FMT" (in mers), numMatches="uint64FMT"\n", | ^ /<>/libkmer/driver-posDB.C:101:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 101 | fprintf(stdout, "Got a F match for mer=%s at "uint64FMT"/"uint64FMT" (in mers), numMatches="uint64FMT"\n", | ^ /<>/libkmer/driver-posDB.C:101:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 101 | fprintf(stdout, "Got a F match for mer=%s at "uint64FMT"/"uint64FMT" (in mers), numMatches="uint64FMT"\n", | ^ /<>/libkmer/driver-posDB.C:110:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(stdout, "Got a R match for mer=%s at "uint64FMT"/"uint64FMT" (in mers), numMatches="uint64FMT"\n", | ^ /<>/libkmer/driver-posDB.C:110:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(stdout, "Got a R match for mer=%s at "uint64FMT"/"uint64FMT" (in mers), numMatches="uint64FMT"\n", | ^ /<>/libkmer/driver-posDB.C:110:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(stdout, "Got a R match for mer=%s at "uint64FMT"/"uint64FMT" (in mers), numMatches="uint64FMT"\n", | ^ /<>/libkmer/driver-posDB.C:255:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 255 | fprintf(stderr, "ERROR: merbegin="uint64FMT" and merend="uint64FMT" are incompatible.\n", | ^ /<>/libkmer/driver-posDB.C:255:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 255 | fprintf(stderr, "ERROR: merbegin="uint64FMT" and merend="uint64FMT" are incompatible.\n", | ^ /<>/libkmer/driver-posDB.C:275:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 275 | fprintf(stderr, "Building table with merSize "uint32FMT", merSkip "uint32FMT"\n", mersize, merskip); | ^ /<>/libkmer/driver-posDB.C:275:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 275 | fprintf(stderr, "Building table with merSize "uint32FMT", merSkip "uint32FMT"\n", mersize, merskip); | ^ g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o /<>/libkmer/positionDB /<>/libkmer/driver-posDB.o /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o /<>/libseq/test-seqCache /<>/libseq/test-seqCache.o /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o /<>/libseq/test-seqStream /<>/libseq/test-seqStream.o /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o /<>/libseq/test-merStream /<>/libseq/test-merStream.o /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm gcc -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/<>=/usr/src/kmer-0~20150903+r2013-8build4 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/mt19937ar/test.o -c /<>/libutil/mt19937ar/test.c rm -f /<>/libutil/mt19937ar/libmt19937ar.a && ar ruvs /<>/libutil/mt19937ar/libmt19937ar.a /<>/libutil/mt19937ar/mt19937ar.o /<>/libutil/mt19937ar/test.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/libutil/mt19937ar/libmt19937ar.a a - /<>/libutil/mt19937ar/mt19937ar.o a - /<>/libutil/mt19937ar/test.o rm -f /<>/libutil/kazlib/libkaz.a && ar ruvs /<>/libutil/kazlib/libkaz.a /<>/libutil/kazlib/dict.o /<>/libutil/kazlib/except.o /<>/libutil/kazlib/hash.o /<>/libutil/kazlib/list.o /<>/libutil/kazlib/sfx.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/libutil/kazlib/libkaz.a a - /<>/libutil/kazlib/dict.o a - /<>/libutil/kazlib/except.o a - /<>/libutil/kazlib/hash.o a - /<>/libutil/kazlib/list.o a - /<>/libutil/kazlib/sfx.o make[2]: Leaving directory '/<>' mv installdir/bin/atac.pl installdir/bin/atac mv -v installdir/lib/halignmodule.so installdir/lib/halign.so renamed 'installdir/lib/halignmodule.so' -> 'installdir/lib/halign.so' mv -v installdir/lib/localAlignerInterfacemodule.so installdir/lib/localAlignerInterface.so renamed 'installdir/lib/localAlignerInterfacemodule.so' -> 'installdir/lib/localAlignerInterface.so' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j4 install DESTDIR=/<>/kmer-0\~20150903\+r2013/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install for perlscript in `grep -l '#!/usr/bin/env \+perl' debian/*/usr/bin/*` `grep -l '#!/usr/bin/env \+perl' debian/*/usr/lib/atac/bin/*` ; do \ sed -i '1s+#!/usr/bin/env perl+#!/usr/bin/perl+' ${perlscript} ; \ done make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a debian/rules override_dh_python3 make[1]: Entering directory '/<>' dh_python3 --no-ext-rename make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a debugedit: debian/sim4db/usr/bin/convertToExtent: Unknown DWARF DW_FORM_0x1f20 335c78d568cd2a9fe2eadff10647a1379e773e92 debugedit: debian/sim4db/usr/bin/uniqPolishes: Unknown DWARF DW_FORM_0x1f20 c4105d351665869e413b81200829e746ae6e40a5 e328ff793a2fc36179bb1499f26eddea9d888240 debugedit: debian/meryl/usr/bin/existDB: Unknown DWARF DW_FORM_0x1f20 d441a3f87aebb15ee36952a60dbbf4b2717574bd debugedit: debian/sim4db/usr/bin/parseSNP: Unknown DWARF DW_FORM_0x1f20 43ab7924c0a0bf27b244adc5146cb765b2bd9033 debugedit: debian/sim4db/usr/bin/realignPolishes: Unknown DWARF DW_FORM_0x1f20 f7840cda4ba883316e87e2df5e48155b0bd76161 debugedit: debian/meryl/usr/bin/mapMers-depth: Unknown DWARF DW_FORM_0x1f20 86adf95e91e7cc92565278301b525d3bfd58d574 debugedit: debian/sim4db/usr/bin/mergePolishes: Unknown DWARF DW_FORM_0x1f20 782ece29f7e0cb01a66b126d3c6c66dd9b09df0f debugedit: debian/meryl/usr/bin/mapMers: Unknown DWARF DW_FORM_0x1f20 4988a6596dd7c8b3fcb5ac18876b00c55326f25c debugedit: debian/sim4db/usr/bin/pickUniquePolish: Unknown DWARF DW_FORM_0x1f20 2cd33b8df2790f8bad5c9aa590bdf4fa37394b24 debugedit: debian/meryl/usr/bin/meryl: Unknown DWARF DW_FORM_0x1f20 b8bcb872e6e78ac2e3c7297b4de0133a9df7f374 debugedit: debian/sim4db/usr/bin/reportAlignmentDifferences: Unknown DWARF DW_FORM_0x1f20 79b3ac350b7202802b41a1086a1eacda477f5db6 debugedit: debian/meryl/usr/bin/simple: Unknown DWARF DW_FORM_0x1f21 ca4dca7278c87478f66de5879e5ab221bb035dde debugedit: debian/sim4db/usr/bin/convertPolishes: Unknown DWARF DW_FORM_0x1f20 c893e40ad8dc31172b20eddb73fb219c62d21caf debugedit: debian/sim4db/usr/bin/detectChimera: Unknown DWARF DW_FORM_0x1f20 2615df4f6e047810d556bcb1c020e9cce60c3081 debugedit: debian/meryl/usr/bin/positionDB: Unknown DWARF DW_FORM_0x1f20 25eec7deca3ed4150397b65f30edbad77347f5f0 debugedit: debian/sim4db/usr/bin/fixPolishesIID: Unknown DWARF DW_FORM_0x1f20 f21885687b0b6f1d201b9558fc22ea48288effab debugedit: debian/meryl/usr/bin/kmer-mask: Unknown DWARF DW_FORM_0x1f20 abfb8fc40c918840bc2622113fadb7011a068ea8 debugedit: debian/sim4db/usr/bin/filterPolishes: Unknown DWARF DW_FORM_0x1f20 1ba94ce8246670c32bb2e9ab463c40f34d1f2a96 debugedit: debian/sim4db/usr/bin/depthOfPolishes: Unknown DWARF DW_FORM_0x1f21 083060fcf8007e41573bd922f7fc51f67edbc578 debugedit: debian/sim4db/usr/bin/vennPolishes: Unknown DWARF DW_FORM_0x1f20 974088ca8be056e61437add8e0a271132bcf2a41 debugedit: debian/sim4db/usr/bin/comparePolishes: Unknown DWARF DW_FORM_0x1f20 dfe1abe427d16a4ee01724e272ca7c12a2eb38be debugedit: debian/sim4db/usr/bin/removeDuplicate: Unknown DWARF DW_FORM_0x1f20 f7d6109e147cebeb4aa7b9dc5474bf6c5c92db46 debugedit: debian/sim4db/usr/bin/sortPolishes: Unknown DWARF DW_FORM_0x1f20 9eec69cca2e51eb0c834ce7404396c40265d415b debugedit: debian/sim4db/usr/bin/cleanPolishes: Unknown DWARF DW_FORM_0x1f20 2d7190a27a20223201840502088906345aa655e8 debugedit: debian/sim4db/usr/bin/headPolishes: Unknown DWARF DW_FORM_0x1f20 639257b04149aff4cea6d93c9f0e744faab79e0d debugedit: debian/sim4db/usr/bin/convertToAtac: Unknown DWARF DW_FORM_0x1f20 cc471f84a30eca1757452e2e5e9ff193a4dc23dc debugedit: debian/sim4db/usr/bin/summarizePolishes: Unknown DWARF DW_FORM_0x1f20 24077bcb6a3424c52ca1ab593b1cd1d089f7f0b0 debugedit: debian/sim4db/usr/bin/plotCoverageVsIdentity: Unknown DWARF DW_FORM_0x1f20 ae58a4d435f3ef245a051d30f6b17c8733feb736 debugedit: debian/sim4db/usr/bin/pickBestPolish: Unknown DWARF DW_FORM_0x1f20 0ca1e090cf6072c77741ec0c60319479aee4472b debugedit: debian/sim4db/usr/bin/sim4db: Unknown DWARF DW_FORM_0x1f20 a049de91c9ce68aa6832dd41ad173ca1607f1651 debugedit: debian/sim4db/usr/bin/mappedCoverage: Unknown DWARF DW_FORM_0x1f20 236b4b9961725218ed8d192aa5053c9475a93be0 debugedit: debian/atac/usr/lib/atac/lib/filter-heavychains.so: Unknown DWARF DW_FORM_0x1f21 7083b15cbd2b467b5143482f164a93016abc79a2 debugedit: debian/atac/usr/lib/atac/lib/localAlignerInterface.so: Unknown DWARF DW_FORM_0x1f20 25cfc70365ccb9d5b9d58e65be7ddddf6cb8d847 debugedit: debian/atac/usr/lib/atac/lib/halign.so: Unknown DWARF DW_FORM_0x1f20 193e5e36c4f4eeda48fc5789d7b2906a34a90a81 debugedit: debian/atac/usr/lib/atac/lib/filter-nop.so: Unknown DWARF DW_FORM_0x1f20 c4e50b5b66ebcf64bdb346c4a6175dd43c3ca034 debugedit: debian/atac/usr/lib/atac/bin/seatac: Unknown DWARF DW_FORM_0x1f20 fa3a0ef99ef95dc421ad8017147169ae7b1fdc59 debugedit: debian/atac/usr/lib/atac/bin/cleanAtac: Unknown DWARF DW_FORM_0x1f21 e71d74edc92a74d93126a38a617bbd5655762e4e debugedit: debian/atac/usr/lib/atac/bin/heavychains: Unknown DWARF DW_FORM_0x1f21 c86edab23e040354bb60c655014d8f696508c084 debugedit: debian/atac/usr/lib/atac/bin/happy-clones-span-clumps: Unknown DWARF DW_FORM_0x1f20 b58c81a15f1a1b76dcda0abfbd0f8382ed1463a6 debugedit: debian/atac/usr/lib/atac/bin/gapShifter: Unknown DWARF DW_FORM_0x1f21 87b9904c169740589e8b95bc11aded1789e4c750 debugedit: debian/atac/usr/lib/atac/bin/correctGaps: Unknown DWARF DW_FORM_0x1f21 22be711a72e37d132bf4a6ee3fdf7fb38a463f79 debugedit: debian/atac/usr/lib/atac/bin/coalesceMatches: Unknown DWARF DW_FORM_0x1f21 f2a2d19a7509d0f88df835d92c6227adf35a3a5c debugedit: debian/atac/usr/lib/atac/bin/extractSequence: Unknown DWARF DW_FORM_0x1f21 6c86379382b8fd8482d1ff36333220cad7aa4ae6 debugedit: debian/atac/usr/lib/atac/bin/extractUnmapped: Unknown DWARF DW_FORM_0x1f20 52518b6cf8f8e7faaabaa7c1c35f2cfa8bf86f0b debugedit: debian/atac/usr/lib/atac/bin/lengthFilter: Unknown DWARF DW_FORM_0x1f20 2de1b759cd3ccd3b1cac5227eff9bf497421dff4 debugedit: debian/atac/usr/lib/atac/bin/statsGenerator: Unknown DWARF DW_FORM_0x1f20 3000c1be01c0182d7aa220b74ea7837c5a579697 debugedit: debian/atac/usr/lib/atac/bin/overlap: Unknown DWARF DW_FORM_0x1f20 475e403c315a009d2b812286320133aa59e39b1a debugedit: debian/atac/usr/lib/atac/bin/uniqueFilter: Unknown DWARF DW_FORM_0x1f21 3afdc51825e240869021c2b3b75e0eb2a66e35a9 debugedit: debian/atac/usr/lib/atac/bin/mismatchCounter: Unknown DWARF DW_FORM_0x1f21 852ceb37bab5a59ed254bc759f6dc6d0fbddb2fd debugedit: debian/atac/usr/lib/atac/bin/matchExtender: Unknown DWARF DW_FORM_0x1f20 5dfe33d52905f8db00906aa6a08f4a46a7d4d387 debugedit: debian/atac/usr/lib/atac/bin/projectFeatures: Unknown DWARF DW_FORM_0x1f20 20dee2780f2fcd415a84d15e3c5e6dd6d2c33a15 debugedit: debian/atac/usr/lib/atac/bin/clumpMaker: Unknown DWARF DW_FORM_0x1f20 ccc54f8c16cc64fa64412c9a3c73b496add84ce3 debugedit: debian/atac/usr/lib/atac/bin/testAtac: Unknown DWARF DW_FORM_0x1f21 6c8eafb459b2c13a863977186ae8a3500048c830 dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libmeryl-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libkmer-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing sim4db (in debian/sim4db); do_strip: , oemstrip: pkgstriptranslations: processing libkmer-dev (in debian/libkmer-dev); do_strip: , oemstrip: pkgstriptranslations: processing libmeryl-dev (in debian/libmeryl-dev); do_strip: , oemstrip: pkgstriptranslations: processing atac-dbgsym (in debian/.debhelper/atac/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libkmer-dev/DEBIAN/control, package libkmer-dev, directory debian/libkmer-dev Searching for duplicated docs in dependency libmeryl-dev... symlinking changelog.Debian.gz in libkmer-dev to file in libmeryl-dev pkgstripfiles: Running PNG optimization (using 4 cpus) for package libkmer-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libkmer-dev' in '../libkmer-dev_0~20150903+r2013-8build4_arm64.deb'. pkgstripfiles: processing control file: debian/libmeryl-dev/DEBIAN/control, package libmeryl-dev, directory debian/libmeryl-dev INFO: pkgstripfiles: waiting for lock (libmeryl-dev) ... pkgstripfiles: processing control file: debian/.debhelper/atac/dbgsym-root/DEBIAN/control, package atac-dbgsym, directory debian/.debhelper/atac/dbgsym-root dpkg-deb: building package 'atac-dbgsym' in 'debian/.debhelper/scratch-space/build-atac/atac-dbgsym_0~20150903+r2013-8build4_arm64.deb'. INFO: pkgstriptranslations version 154 Renaming atac-dbgsym_0~20150903+r2013-8build4_arm64.deb to atac-dbgsym_0~20150903+r2013-8build4_arm64.ddeb pkgstriptranslations: processing meryl (in debian/meryl); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/meryl/DEBIAN/control, package meryl, directory debian/meryl pkgstripfiles: Running PNG optimization (using 4 cpus) for package meryl ... pkgstripfiles: No PNG files. dpkg-deb: building package 'meryl' in '../meryl_0~20150903+r2013-8build4_arm64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package libmeryl-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libmeryl-dev' in '../libmeryl-dev_0~20150903+r2013-8build4_arm64.deb'. INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing leaff (in debian/leaff); do_strip: , oemstrip: pkgstriptranslations: processing meryl-dbgsym (in debian/.debhelper/meryl/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/leaff/DEBIAN/control, package leaff, directory debian/leaff pkgstripfiles: Running PNG optimization (using 4 cpus) for package leaff ... pkgstripfiles: No PNG files. dpkg-deb: building package 'leaff' in '../leaff_0~20150903+r2013-8build4_arm64.deb'. pkgstripfiles: processing control file: debian/.debhelper/meryl/dbgsym-root/DEBIAN/control, package meryl-dbgsym, directory debian/.debhelper/meryl/dbgsym-root dpkg-deb: building package 'meryl-dbgsym' in 'debian/.debhelper/scratch-space/build-meryl/meryl-dbgsym_0~20150903+r2013-8build4_arm64.deb'. Renaming meryl-dbgsym_0~20150903+r2013-8build4_arm64.deb to meryl-dbgsym_0~20150903+r2013-8build4_arm64.ddeb INFO: pkgstriptranslations version 154 pkgstriptranslations: processing leaff-dbgsym (in debian/.debhelper/leaff/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/leaff/dbgsym-root/DEBIAN/control, package leaff-dbgsym, directory debian/.debhelper/leaff/dbgsym-root dpkg-deb: building package 'leaff-dbgsym' in 'debian/.debhelper/scratch-space/build-leaff/leaff-dbgsym_0~20150903+r2013-8build4_arm64.deb'. Renaming leaff-dbgsym_0~20150903+r2013-8build4_arm64.deb to leaff-dbgsym_0~20150903+r2013-8build4_arm64.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/sim4db/DEBIAN/control, package sim4db, directory debian/sim4db pkgstripfiles: Running PNG optimization (using 4 cpus) for package sim4db ... pkgstripfiles: No PNG files. dpkg-deb: building package 'sim4db' in '../sim4db_0~20150903+r2013-8build4_arm64.deb'. INFO: pkgstriptranslations version 154 pkgstriptranslations: processing sim4db-dbgsym (in debian/.debhelper/sim4db/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/sim4db/dbgsym-root/DEBIAN/control, package sim4db-dbgsym, directory debian/.debhelper/sim4db/dbgsym-root dpkg-deb: building package 'sim4db-dbgsym' in 'debian/.debhelper/scratch-space/build-sim4db/sim4db-dbgsym_0~20150903+r2013-8build4_arm64.deb'. Renaming sim4db-dbgsym_0~20150903+r2013-8build4_arm64.deb to sim4db-dbgsym_0~20150903+r2013-8build4_arm64.ddeb INFO: pkgstriptranslations version 154 pkgstriptranslations: processing atac (in debian/atac); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/atac/DEBIAN/control, package atac, directory debian/atac Searching for duplicated docs in dependency leaff... symlinking changelog.Debian.gz in atac to file in leaff Searching for duplicated docs in dependency meryl... pkgstripfiles: Running PNG optimization (using 4 cpus) for package atac ... pkgstripfiles: No PNG files. dpkg-deb: building package 'atac' in '../atac_0~20150903+r2013-8build4_arm64.deb'. dpkg-genbuildinfo --build=any -O../kmer_0~20150903+r2013-8build4_arm64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../kmer_0~20150903+r2013-8build4_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-01-19T19:58:10Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kmer_0~20150903+r2013-8build4_arm64.changes: -------------------------------------------- Format: 1.8 Date: Fri, 19 Jan 2024 19:49:16 +0000 Source: kmer Binary: atac leaff libkmer-dev libmeryl-dev meryl sim4db Built-For-Profiles: noudeb Architecture: arm64 Version: 0~20150903+r2013-8build4 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Graham Inggs Description: atac - genome assembly-to-assembly comparison leaff - biological sequence library utilities and applications libkmer-dev - suite of tools for DNA sequence analysis (development lib) libmeryl-dev - in- and out-of-core kmer counting and utilities (development lib) meryl - in- and out-of-core kmer counting and utilities sim4db - batch spliced alignment of cDNA sequences to a target genome Changes: kmer (0~20150903+r2013-8build4) noble; urgency=medium . * No-change rebuild with Python 3.12 as default Checksums-Sha1: 6ee58975126b56f3aa8210ff4580e17e7b27c966 1791714 atac-dbgsym_0~20150903+r2013-8build4_arm64.ddeb a78ce124cdbc54b6bf6e71463fd25baf7f93e570 358276 atac_0~20150903+r2013-8build4_arm64.deb c3e67328313cef9fc46b105d6aa66f86a7dbc8aa 9242 kmer_0~20150903+r2013-8build4_arm64.buildinfo 166c55643a983e78b5bb90826c20172bd3cf0653 160158 leaff-dbgsym_0~20150903+r2013-8build4_arm64.ddeb 841f03ef1f5d8d925e6a8b0db9361c31f82d82de 66658 leaff_0~20150903+r2013-8build4_arm64.deb af001aabd2d15baa711dee5d474947b25c3142cc 224478 libkmer-dev_0~20150903+r2013-8build4_arm64.deb 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3.12.1-2), readline-common (= 8.2-3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-2), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-3ubuntu1), tar (= 1.35+dfsg-3), tzdata (= 2023d-1ubuntu2), util-linux (= 2.39.2-6ubuntu1), xz-utils (= 5.4.5-0.3), zlib1g (= 1:1.3.dfsg-3ubuntu1), zlib1g-dev (= 1:1.3.dfsg-3ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1705693756" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ atac_0~20150903+r2013-8build4_arm64.deb --------------------------------------- new Debian package, version 2.0. size 358276 bytes: control archive=2593 bytes. 1434 bytes, 28 lines control 2864 bytes, 44 lines md5sums 297 bytes, 12 lines * postinst #!/bin/sh 368 bytes, 12 lines * prerm #!/bin/sh Package: atac Source: kmer Version: 0~20150903+r2013-8build4 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2465 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 5.2), python3 (<< 3.13), python3 (>= 3.12~), python3.12, python3:any, perl:any, libfile-which-perl, leaff, meryl, gnuplot Recommends: kmer-examples Section: science Priority: optional Homepage: http://kmer.sourceforge.net Description: genome assembly-to-assembly comparison atac computes a one-to-one pairwise alignment of large DNA sequences. It first finds the unique k-mers in each sequence, chains them to larger blocks, and fills in spaces between blocks. It was written primarily to transfer annotations between different assemblies of the human genome. . The output is a set of ungapped 'matches', and a set of gapped 'runs' formed from the matches. Each match or run associates one sequence with the other sequence. The association is 'unique', in that there is no other (sizeable) associations for either sequence. Thus, large repeats and duplications are not present in the output - they appear as unmapped regions. . Though the output is always pairwise, atac can cache intermediate results to speed a comparisons of multiple sequences. . This package is part of the Kmer suite. drwxr-xr-x root/root 0 2024-01-19 19:49 ./ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/bin/ -rwxr-xr-x root/root 32718 2024-01-19 19:49 ./usr/bin/atac drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/lib/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/lib/atac/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/lib/atac/bin/ -rwxr-xr-x root/root 22722 2024-01-19 19:49 ./usr/lib/atac/bin/AtacDriver.py -rwxr-xr-x root/root 133376 2024-01-19 19:49 ./usr/lib/atac/bin/cleanAtac -rwxr-xr-x root/root 133376 2024-01-19 19:49 ./usr/lib/atac/bin/clumpMaker -rwxr-xr-x root/root 67840 2024-01-19 19:49 ./usr/lib/atac/bin/coalesceMatches -rwxr-xr-x root/root 133376 2024-01-19 19:49 ./usr/lib/atac/bin/correctGaps -rwxr-xr-x root/root 67840 2024-01-19 19:49 ./usr/lib/atac/bin/extractSequence -rwxr-xr-x root/root 133376 2024-01-19 19:49 ./usr/lib/atac/bin/extractUnmapped -rwxr-xr-x root/root 133376 2024-01-19 19:49 ./usr/lib/atac/bin/gapShifter -rwxr-xr-x root/root 67832 2024-01-19 19:49 ./usr/lib/atac/bin/happy-clones-span-clumps -rwxr-xr-x root/root 67760 2024-01-19 19:49 ./usr/lib/atac/bin/heavychains -rwxr-xr-x root/root 67752 2024-01-19 19:49 ./usr/lib/atac/bin/lengthFilter -rwxr-xr-x root/root 10582 2024-01-19 19:49 ./usr/lib/atac/bin/makeplot.pl -rwxr-xr-x root/root 133408 2024-01-19 19:49 ./usr/lib/atac/bin/matchExtender -rwxr-xr-x root/root 133376 2024-01-19 19:49 ./usr/lib/atac/bin/mismatchCounter -rwxr-xr-x root/root 133376 2024-01-19 19:49 ./usr/lib/atac/bin/overlap -rwxr-xr-x root/root 67840 2024-01-19 19:49 ./usr/lib/atac/bin/projectFeatures -rwxr-xr-x root/root 133416 2024-01-19 19:49 ./usr/lib/atac/bin/seatac -rwxr-xr-x root/root 133376 2024-01-19 19:49 ./usr/lib/atac/bin/statsGenerator -rwxr-xr-x root/root 133376 2024-01-19 19:49 ./usr/lib/atac/bin/testAtac -rwxr-xr-x root/root 133408 2024-01-19 19:49 ./usr/lib/atac/bin/uniqueFilter drwxr-xr-x root/root 0 2024-01-19 19:49 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./usr/lib/atac/lib/filter-nop.so -rw-r--r-- root/root 67704 2024-01-19 19:49 ./usr/lib/atac/lib/halign.so -rw-r--r-- root/root 67880 2024-01-19 19:49 ./usr/lib/atac/lib/localAlignerInterface.so -rwxr-xr-x root/root 2681 2024-01-19 19:49 ./usr/lib/atac/lib/mkstats.py -rw-r--r-- root/root 21269 2024-01-19 19:49 ./usr/lib/atac/lib/squeezeIntraRunGaps.py drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/doc/atac/ -rw-r--r-- root/root 3178 2024-01-19 19:49 ./usr/share/doc/atac/README.atac -rw-r--r-- root/root 244 2020-04-19 15:59 ./usr/share/doc/atac/README.test -rw-r--r-- root/root 792 2020-04-19 15:59 ./usr/share/doc/atac/atac-unit-test lrwxrwxrwx root/root 0 2024-01-19 19:49 ./usr/share/doc/atac/changelog.Debian.gz -> ../leaff/changelog.Debian.gz -rw-r--r-- root/root 7499 2020-04-19 15:59 ./usr/share/doc/atac/copyright drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/man/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/man/man1/ -rw-r--r-- root/root 704 2024-01-19 19:49 ./usr/share/man/man1/atac.1.gz drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/python3/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/python3/runtime.d/ -rwxr-xr-x root/root 124 2024-01-19 19:49 ./usr/share/python3/runtime.d/atac.rtupdate leaff_0~20150903+r2013-8build4_arm64.deb ---------------------------------------- new Debian package, version 2.0. size 66658 bytes: control archive=800 bytes. 718 bytes, 17 lines control 320 bytes, 5 lines md5sums Package: leaff Source: kmer Version: 0~20150903+r2013-8build4 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 156 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 5) Section: science Priority: optional Homepage: http://kmer.sourceforge.net Description: biological sequence library utilities and applications LEAFF (Let's Extract Anything From Fasta) is a utility program for working with multi-fasta files. In addition to providing random access to the base level, it includes several analysis functions. . This package is part of the Kmer suite. drwxr-xr-x root/root 0 2024-01-19 19:49 ./ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/bin/ -rwxr-xr-x root/root 133304 2024-01-19 19:49 ./usr/bin/leaff drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/doc/leaff/ -rw-r--r-- root/root 3373 2011-01-20 03:32 ./usr/share/doc/leaff/README.leaff.gz -rw-r--r-- root/root 832 2024-01-19 19:49 ./usr/share/doc/leaff/changelog.Debian.gz -rw-r--r-- root/root 7499 2020-04-19 15:59 ./usr/share/doc/leaff/copyright drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/man/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/man/man1/ -rw-r--r-- root/root 2732 2024-01-19 19:49 ./usr/share/man/man1/leaff.1.gz libkmer-dev_0~20150903+r2013-8build4_arm64.deb ---------------------------------------------- new Debian package, version 2.0. size 224478 bytes: control archive=2089 bytes. 720 bytes, 18 lines control 3650 bytes, 53 lines md5sums Package: libkmer-dev Source: kmer Version: 0~20150903+r2013-8build4 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 847 Depends: libmeryl-dev Section: libdevel Priority: optional Homepage: http://kmer.sourceforge.net Description: suite of tools for DNA sequence analysis (development lib) The kmer package is a suite of tools for DNA sequence analysis. It provides tools for searching (ESTs, mRNAs, sequencing reads); aligning (ESTs, mRNAs, whole genomes); and a variety of analyses based on kmers. . This package contains headers and static libraries for kmer. drwxr-xr-x root/root 0 2024-01-19 19:49 ./ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/include/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/include/kmer/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/include/kmer/bio/ -rw-r--r-- root/root 647 2008-07-28 21:43 ./usr/include/kmer/bio/alphabet.h -rw-r--r-- root/root 381 2008-09-09 23:55 ./usr/include/kmer/bio/bio++.H -rw-r--r-- root/root 766 2014-04-11 20:17 ./usr/include/kmer/bio/bio.h -rw-r--r-- root/root 5588 2014-04-11 20:17 ./usr/include/kmer/bio/kmer.H -rw-r--r-- root/root 10979 2014-04-11 20:17 ./usr/include/kmer/bio/kmerhuge.H -rw-r--r-- root/root 2715 2014-04-11 20:17 ./usr/include/kmer/bio/kmeriface.H -rw-r--r-- root/root 3402 2014-04-11 20:17 ./usr/include/kmer/bio/kmertiny.H -rw-r--r-- root/root 7314 2014-04-11 20:17 ./usr/include/kmer/bio/merCovering.H -rw-r--r-- root/root 2024 2014-04-11 20:17 ./usr/include/kmer/bio/merList.H -rw-r--r-- root/root 1395 2014-04-11 20:17 ./usr/include/kmer/bio/mers.h drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/include/kmer/kmer/ -rw-r--r-- root/root 4358 2014-04-11 20:17 ./usr/include/kmer/kmer/existDB.H -rw-r--r-- root/root 2098 2014-04-11 20:17 ./usr/include/kmer/kmer/merTable.H -rw-r--r-- root/root 6987 2014-04-11 20:17 ./usr/include/kmer/kmer/positionDB.H drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/include/kmer/seq/ -rw-r--r-- root/root 1797 2014-04-11 20:17 ./usr/include/kmer/seq/fastaFile.H -rw-r--r-- root/root 1323 2014-08-23 02:01 ./usr/include/kmer/seq/fastaStdin.H -rw-r--r-- root/root 1797 2014-04-11 20:17 ./usr/include/kmer/seq/fastqFile.H -rw-r--r-- root/root 1423 2014-08-23 02:01 ./usr/include/kmer/seq/fastqStdin.H -rw-r--r-- root/root 3129 2014-04-11 20:17 ./usr/include/kmer/seq/merStream.H -rw-r--r-- root/root 2941 2014-08-23 02:01 ./usr/include/kmer/seq/seqCache.H -rw-r--r-- root/root 563 2014-04-11 20:17 ./usr/include/kmer/seq/seqFactory.H -rw-r--r-- root/root 1516 2014-08-23 02:01 ./usr/include/kmer/seq/seqFile.H -rw-r--r-- root/root 3046 2014-04-11 20:17 ./usr/include/kmer/seq/seqStore.H -rw-r--r-- root/root 3705 2014-04-11 20:17 ./usr/include/kmer/seq/seqStream.H -rw-r--r-- root/root 2591 2014-04-11 20:17 ./usr/include/kmer/seq/sffFile.H -rw-r--r-- root/root 3714 2014-04-11 20:17 ./usr/include/kmer/seq/test-correctSequence.H drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/include/kmer/util/ -rw-r--r-- root/root 4720 2014-04-11 20:17 ./usr/include/kmer/util/bigQueue.H -rw-r--r-- root/root 4475 2014-04-11 20:17 ./usr/include/kmer/util/bitOperations.h -rw-r--r-- root/root 7072 2014-04-11 20:17 ./usr/include/kmer/util/bitPackedArray.H -rw-r--r-- root/root 2734 2014-04-11 20:17 ./usr/include/kmer/util/bitPackedFile.H -rw-r--r-- root/root 13015 2014-04-11 20:17 ./usr/include/kmer/util/bitPacking.h -rw-r--r-- root/root 1395 2014-04-11 20:17 ./usr/include/kmer/util/bzipBuffer.H -rw-r--r-- root/root 737 2014-04-11 20:17 ./usr/include/kmer/util/eliasDeltaEncoding.h -rw-r--r-- root/root 702 2014-04-11 20:17 ./usr/include/kmer/util/eliasGammaEncoding.h -rw-r--r-- root/root 1365 2014-04-11 20:17 ./usr/include/kmer/util/endianess.H -rw-r--r-- root/root 3558 2014-04-11 20:17 ./usr/include/kmer/util/fibonacciEncoding.h -rw-r--r-- root/root 3234 2014-04-11 20:17 ./usr/include/kmer/util/generalizedUnaryEncoding.h -rw-r--r-- root/root 16331 2015-04-22 22:49 ./usr/include/kmer/util/intervalList.H -rw-r--r-- root/root 2599 2014-04-11 20:17 ./usr/include/kmer/util/logMsg.H -rw-r--r-- root/root 1829 2014-04-11 20:17 ./usr/include/kmer/util/readBuffer.H -rw-r--r-- root/root 1614 2014-04-11 20:17 ./usr/include/kmer/util/recordFile.H -rw-r--r-- root/root 2012 2014-04-11 20:17 ./usr/include/kmer/util/speedCounter.H -rw-r--r-- root/root 2758 2014-04-11 20:17 ./usr/include/kmer/util/splitToWords.H -rw-r--r-- root/root 2654 2014-04-11 20:17 ./usr/include/kmer/util/sweatShop.H -rw-r--r-- root/root 1004 2014-04-11 20:17 ./usr/include/kmer/util/uint32List.H -rw-r--r-- root/root 1489 2014-04-11 20:17 ./usr/include/kmer/util/unaryEncoding.h -rw-r--r-- root/root 1024 2014-04-11 20:17 ./usr/include/kmer/util/util++.H -rw-r--r-- root/root 9288 2014-04-11 20:17 ./usr/include/kmer/util/util.h drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/lib/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/lib/aarch64-linux-gnu/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/lib/aarch64-linux-gnu/kmer/ -rw-r--r-- root/root 4576 2024-01-19 19:49 ./usr/lib/aarch64-linux-gnu/kmer/libmt19937ar.a -rw-r--r-- root/root 227098 2024-01-19 19:49 ./usr/lib/aarch64-linux-gnu/kmer/libutil.a -rw-r--r-- root/root 68578 2024-01-19 19:49 ./usr/lib/aarch64-linux-gnu/libbio.a -rw-r--r-- root/root 140344 2024-01-19 19:49 ./usr/lib/aarch64-linux-gnu/libkmer.a -rw-r--r-- root/root 217650 2024-01-19 19:49 ./usr/lib/aarch64-linux-gnu/libseq.a drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/doc/libkmer-dev/ lrwxrwxrwx root/root 0 2024-01-19 19:49 ./usr/share/doc/libkmer-dev/changelog.Debian.gz -> ../libmeryl-dev/changelog.Debian.gz -rw-r--r-- root/root 7499 2020-04-19 15:59 ./usr/share/doc/libkmer-dev/copyright libmeryl-dev_0~20150903+r2013-8build4_arm64.deb ----------------------------------------------- new Debian package, version 2.0. size 61448 bytes: control archive=924 bytes. 995 bytes, 22 lines control 415 bytes, 6 lines md5sums Package: libmeryl-dev Source: kmer Version: 0~20150903+r2013-8build4 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 188 Section: libdevel Priority: optional Homepage: http://kmer.sourceforge.net Description: in- and out-of-core kmer counting and utilities (development lib) meryl computes the kmer content of genomic sequences. Kmer content is represented as a list of kmers and the number of times each occurs in the input sequences. The kmer can be restricted to only the forward kmer, only the reverse kmer, or the canonical kmer (lexicographically smaller of the forward and reverse kmer at each location). Meryl can report the histogram of counts, the list of kmers and their counts, or can perform mathematical and set operations on the processed data files. . This package contains the static libraries and header files. drwxr-xr-x root/root 0 2024-01-19 19:49 ./ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/include/ -rw-r--r-- root/root 5822 2014-04-11 20:17 ./usr/include/libmeryl.H -rw-r--r-- root/root 3420 2015-05-29 12:35 ./usr/include/meryl.H drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/lib/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/lib/aarch64-linux-gnu/ -rw-r--r-- root/root 40844 2024-01-19 19:49 ./usr/lib/aarch64-linux-gnu/libmeryl.a drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/lib/aarch64-linux-gnu/meryl/ -rw-r--r-- root/root 121324 2024-01-19 19:49 ./usr/lib/aarch64-linux-gnu/meryl/libmerylguts.a drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/doc/libmeryl-dev/ -rw-r--r-- root/root 838 2024-01-19 19:49 ./usr/share/doc/libmeryl-dev/changelog.Debian.gz -rw-r--r-- root/root 7499 2020-04-19 15:59 ./usr/share/doc/libmeryl-dev/copyright meryl_0~20150903+r2013-8build4_arm64.deb ---------------------------------------- new Debian package, version 2.0. size 213922 bytes: control archive=1259 bytes. 1043 bytes, 24 lines control 1036 bytes, 17 lines md5sums Package: meryl Source: kmer Version: 0~20150903+r2013-8build4 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1012 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 5) Suggests: gridengine-client Section: science Priority: optional Homepage: http://kmer.sourceforge.net Description: in- and out-of-core kmer counting and utilities meryl computes the kmer content of genomic sequences. Kmer content is represented as a list of kmers and the number of times each occurs in the input sequences. The kmer can be restricted to only the forward kmer, only the reverse kmer, or the canonical kmer (lexicographically smaller of the forward and reverse kmer at each location). Meryl can report the histogram of counts, the list of kmers and their counts, or can perform mathematical and set operations on the processed data files. . This package is part of the Kmer suite. drwxr-xr-x root/root 0 2024-01-19 19:49 ./ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/bin/ -rwxr-xr-x root/root 133376 2024-01-19 19:49 ./usr/bin/existDB -rwxr-xr-x root/root 133376 2024-01-19 19:49 ./usr/bin/kmer-mask -rwxr-xr-x root/root 133376 2024-01-19 19:49 ./usr/bin/mapMers -rwxr-xr-x root/root 133376 2024-01-19 19:49 ./usr/bin/mapMers-depth -rwxr-xr-x root/root 198912 2024-01-19 19:49 ./usr/bin/meryl -rwxr-xr-x root/root 133416 2024-01-19 19:49 ./usr/bin/positionDB -rwxr-xr-x root/root 133376 2024-01-19 19:49 ./usr/bin/simple drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/doc/meryl/ -rw-r--r-- root/root 2684 2015-05-20 07:56 ./usr/share/doc/meryl/README.meryl.gz -rw-r--r-- root/root 828 2024-01-19 19:49 ./usr/share/doc/meryl/changelog.Debian.gz -rw-r--r-- root/root 7499 2020-04-19 15:59 ./usr/share/doc/meryl/copyright drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/man/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/share/man/man1/ -rw-r--r-- root/root 634 2024-01-19 19:49 ./usr/share/man/man1/existDB.1.gz -rw-r--r-- root/root 1069 2024-01-19 19:49 ./usr/share/man/man1/kmer-mask.1.gz -rw-r--r-- root/root 484 2024-01-19 19:49 ./usr/share/man/man1/mapMers-depth.1.gz -rw-r--r-- root/root 388 2024-01-19 19:49 ./usr/share/man/man1/mapMers.1.gz -rw-r--r-- root/root 2669 2024-01-19 19:49 ./usr/share/man/man1/meryl.1.gz -rw-r--r-- root/root 672 2024-01-19 19:49 ./usr/share/man/man1/positionDB.1.gz -rw-r--r-- root/root 511 2024-01-19 19:49 ./usr/share/man/man1/simple.1.gz sim4db_0~20150903+r2013-8build4_arm64.deb ----------------------------------------- new Debian package, version 2.0. size 531474 bytes: control archive=2137 bytes. 1638 bytes, 31 lines control 3551 bytes, 54 lines md5sums Package: sim4db Source: kmer Version: 0~20150903+r2013-8build4 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2724 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 5.2) Recommends: leaff, kmer-examples Section: science Priority: optional Homepage: http://kmer.sourceforge.net Description: batch spliced alignment of cDNA sequences to a target genome Sim4db performs fast batch alignment of large cDNA (EST, mRNA) sequence sets to a set of eukaryotic genomic regions. It uses the sim4 and sim4cc algorithms to determine the alignments, but incorporates a fast sequence indexing and retrieval mechanism, implemented in the sister package 'leaff', to speedily process large volumes of sequences. . While sim4db produces alignments in the same way as sim4 or sim4cc, it has additional features to make it more amenable for use with whole-genome annotation pipelines. A script file can be used to group pairings between cDNAs and their corresponding genomic regions, to be aligned as one run and using the same set of parameters. Sim4db also optionally reports more than one alignment for the same cDNA within a genomic region, as long as they meet user-defined criteria such as minimum length, percentage sequence identity or coverage. This feature is instrumental in finding all alignments of a gene family at one locus. Lastly, the output is presented either as custom sim4db alignments or as GFF3 gene features. . This package is part of the Kmer suite. drwxr-xr-x root/root 0 2024-01-19 19:49 ./ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/ drwxr-xr-x root/root 0 2024-01-19 19:49 ./usr/bin/ -rwxr-xr-x root/root 67760 2024-01-19 19:49 ./usr/bin/cleanPolishes -rwxr-xr-x root/root 133296 2024-01-19 19:49 ./usr/bin/comparePolishes -rwxr-xr-x root/root 67760 2024-01-19 19:49 ./usr/bin/convertPolishes -rwxr-xr-x root/root 67752 2024-01-19 19:49 ./usr/bin/convertToAtac -rwxr-xr-x root/root 67752 2024-01-19 19:49 ./usr/bin/convertToExtent -rwxr-xr-x root/root 67752 2024-01-19 19:49 ./usr/bin/depthOfPolishes -rwxr-xr-x root/root 67752 2024-01-19 19:49 ./usr/bin/detectChimera -rwxr-xr-x root/root 67760 2024-01-19 19:49 ./usr/bin/filterPolishes -rwxr-xr-x root/root 133376 2024-01-19 19:49 ./usr/bin/fixPolishesIID -rwxr-xr-x root/root 67760 2024-01-19 19:49 ./usr/bin/headPolishes -rwxr-xr-x root/root 133376 2024-01-19 19:49 ./usr/bin/mappedCoverage -rwxr-xr-x root/root 133376 2024-01-19 19:49 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+------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: 175984 Build-Time: 300 Distribution: noble-proposed Host Architecture: arm64 Install-Time: 17 Job: kmer_0~20150903+r2013-8build4.dsc Machine Architecture: arm64 Package: kmer Package-Time: 334 Source-Version: 0~20150903+r2013-8build4 Space: 175984 Status: successful Version: 0~20150903+r2013-8build4 -------------------------------------------------------------------------------- Finished at 2024-01-19T19:58:10Z Build needed 00:05:34, 175984k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27660874 Scanning for processes to kill in build PACKAGEBUILD-27660874