https://launchpad.net/ubuntu/+source/kraken/1.1.1-4/+build/24626385 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-005 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:08:02 UTC 2022 s390x Buildd toolchain package versions: launchpad-buildd_223~593~ubuntu20.04.1 python3-lpbuildd_223~593~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 6 Nov 20:25:37 ntpdate[1798]: adjust time server 10.211.37.1 offset 0.001112 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-24626385 --image-type chroot /home/buildd/filecache-default/8d83e5a8c0e71d89e50aa772480282231f48e921 Creating target for build PACKAGEBUILD-24626385 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-24626385 Starting target for build PACKAGEBUILD-24626385 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-24626385 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24626385 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-24626385 Updating target for build PACKAGEBUILD-24626385 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [224 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main s390x Packages [1317 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe s390x Packages [13.8 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5791 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x Packages [329 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [139 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe s390x Packages [2188 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [1161 kB] Fetched 25.7 MB in 8s (3042 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 sgml-base Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.36 perl-modules-5.36 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-s390x-linux-gnu cpp-12 debianutils fakeroot g++-12 gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers libapparmor1 libapt-pkg6.0 libasan8 libassuan0 libatomic1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libfakeroot libffi8 libgcc-12-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libidn2-0 libitm1 libjson-c5 liblz4-1 liblzma5 libp11-kit0 libpng16-16 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsqlite3-0 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libubsan1 libudev1 libunistring2 linux-libc-dev lto-disabled-list perl perl-base readline-common sgml-base systemd systemd-sysv tzdata usrmerge xz-utils zlib1g 80 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 73.4 MB of archives. After this operation, 47.2 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libcrypt-dev s390x 1:4.4.30-1 [114 kB] Get:2 http://ftpmaster.internal/ubuntu lunar/main s390x libc6-dev s390x 2.36-0ubuntu4 [1516 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main s390x libc-dev-bin s390x 2.36-0ubuntu4 [19.6 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libcrypt1 s390x 1:4.4.30-1 [82.3 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x linux-libc-dev s390x 5.19.0-23.24 [1339 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main s390x libcc1-0 s390x 12.2.0-9ubuntu1 [45.5 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main s390x gcc-12-base s390x 12.2.0-9ubuntu1 [19.5 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main s390x libgcc-s1 s390x 12.2.0-9ubuntu1 [28.3 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main s390x libgomp1 s390x 12.2.0-9ubuntu1 [122 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main s390x libitm1 s390x 12.2.0-9ubuntu1 [29.5 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main s390x libatomic1 s390x 12.2.0-9ubuntu1 [8936 B] Get:12 http://ftpmaster.internal/ubuntu lunar/main s390x libasan8 s390x 12.2.0-9ubuntu1 [2408 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main s390x libubsan1 s390x 12.2.0-9ubuntu1 [958 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main s390x g++-12 s390x 12.2.0-9ubuntu1 [9436 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main s390x libstdc++-12-dev s390x 12.2.0-9ubuntu1 [2192 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main s390x libgcc-12-dev s390x 12.2.0-9ubuntu1 [853 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main s390x gcc-12 s390x 12.2.0-9ubuntu1 [16.2 MB] Get:18 http://ftpmaster.internal/ubuntu lunar/main s390x cpp-12 s390x 12.2.0-9ubuntu1 [8165 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main s390x libstdc++6 s390x 12.2.0-9ubuntu1 [728 kB] Get:20 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x zlib1g s390x 1:1.2.11.dfsg-4.1ubuntu2 [67.1 kB] Get:21 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libctf0 s390x 2.39-8ubuntu2 [94.0 kB] Get:22 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libctf-nobfd0 s390x 2.39-8ubuntu2 [94.4 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libbinutils s390x 2.39-8ubuntu2 [419 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x binutils-common s390x 2.39-8ubuntu2 [223 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x binutils s390x 2.39-8ubuntu2 [3102 B] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x binutils-s390x-linux-gnu s390x 2.39-8ubuntu2 [2047 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main s390x libc6 s390x 2.36-0ubuntu4 [2667 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main s390x base-files s390x 12.3ubuntu1 [73.4 kB] Get:29 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x debianutils s390x 5.7-0.4 [103 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main s390x bash s390x 5.2-1ubuntu2 [785 kB] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x grep s390x 3.8-3 [159 kB] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x perl-modules-5.36 all 5.36.0-4ubuntu2 [2984 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libperl5.36 s390x 5.36.0-4ubuntu2 [4738 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x perl s390x 5.36.0-4ubuntu2 [235 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x perl-base s390x 5.36.0-4ubuntu2 [1713 kB] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libgdbm6 s390x 1.23-3 [33.8 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libgdbm-compat4 s390x 1.23-3 [6474 B] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libselinux1 s390x 3.4-1build1 [76.9 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x base-passwd s390x 3.6.1 [49.2 kB] Get:40 http://ftpmaster.internal/ubuntu lunar/main s390x usrmerge all 29ubuntu2 [55.8 kB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x init-system-helpers all 1.65.2 [38.1 kB] Get:42 http://ftpmaster.internal/ubuntu lunar/main s390x libc-bin s390x 2.36-0ubuntu4 [603 kB] Get:43 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x liblz4-1 s390x 1.9.4-1 [59.9 kB] Get:44 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x liblzma5 s390x 5.2.7-0.1 [102 kB] Get:45 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libapparmor1 s390x 3.0.7-1ubuntu3 [36.7 kB] Get:46 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libaudit-common all 1:3.0.7-1ubuntu2 [5018 B] Get:47 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libcap-ng0 s390x 0.8.3-1build1 [15.0 kB] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libaudit1 s390x 1:3.0.7-1ubuntu2 [45.4 kB] Get:49 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libseccomp2 s390x 2.5.4-1ubuntu2 [46.3 kB] Get:50 http://ftpmaster.internal/ubuntu lunar/main s390x systemd-sysv s390x 251.4-1ubuntu7 [11.2 kB] Get:51 http://ftpmaster.internal/ubuntu lunar/main s390x systemd s390x 251.4-1ubuntu7 [2694 kB] Get:52 http://ftpmaster.internal/ubuntu lunar/main s390x libsystemd-shared s390x 251.4-1ubuntu7 [1605 kB] Get:53 http://ftpmaster.internal/ubuntu lunar/main s390x libsystemd0 s390x 251.4-1ubuntu7 [313 kB] Get:54 http://ftpmaster.internal/ubuntu lunar/main s390x libudev1 s390x 251.4-1ubuntu7 [79.0 kB] Get:55 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libapt-pkg6.0 s390x 2.5.4 [867 kB] Get:56 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libgpg-error0 s390x 1.46-1 [68.2 kB] Get:57 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x gpgv s390x 2.2.40-1ubuntu1 [134 kB] Get:58 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libunistring2 s390x 1.0-2 [539 kB] Get:59 http://ftpmaster.internal/ubuntu lunar/main s390x libidn2-0 s390x 2.3.3-1build1 [62.8 kB] Get:60 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libffi8 s390x 3.4.4-1 [21.0 kB] Get:61 http://ftpmaster.internal/ubuntu lunar/main s390x libp11-kit0 s390x 0.24.1-1ubuntu2 [252 kB] Get:62 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libtasn1-6 s390x 4.19.0-2 [42.9 kB] Get:63 http://ftpmaster.internal/ubuntu lunar/main s390x libgnutls30 s390x 3.7.7-2ubuntu2 [883 kB] Get:64 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x apt s390x 2.5.4 [1351 kB] Get:65 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x init s390x 1.65.2 [4810 B] Get:66 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x sgml-base all 1.31 [11.4 kB] Get:67 http://ftpmaster.internal/ubuntu lunar/main s390x libsemanage-common all 3.4-1build1 [9544 B] Get:68 http://ftpmaster.internal/ubuntu lunar/main s390x libsemanage2 s390x 3.4-1build1 [88.4 kB] Get:69 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libjson-c5 s390x 0.16-2 [32.4 kB] Get:70 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x readline-common all 8.2-1.1 [55.1 kB] Get:71 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libreadline8 s390x 8.2-1.1 [150 kB] Get:72 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libsqlite3-0 s390x 3.39.4-1 [644 kB] Get:73 http://ftpmaster.internal/ubuntu lunar/main s390x tzdata all 2022f-0ubuntu1 [400 kB] Get:74 http://ftpmaster.internal/ubuntu lunar/main s390x libpng16-16 s390x 1.6.38-2 [183 kB] Get:75 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x xz-utils s390x 5.2.7-0.1 [141 kB] Get:76 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libfakeroot s390x 1.30.1-1ubuntu1 [30.0 kB] Get:77 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x fakeroot s390x 1.30.1-1ubuntu1 [59.6 kB] Get:78 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libassuan0 s390x 2.5.5-5 [35.0 kB] Get:79 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x gpg s390x 2.2.40-1ubuntu1 [508 kB] Get:80 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x gpgconf s390x 2.2.40-1ubuntu1 [94.9 kB] Get:81 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x gpg-agent s390x 2.2.40-1ubuntu1 [213 kB] Get:82 http://ftpmaster.internal/ubuntu lunar/main s390x lto-disabled-list all 35 [12.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 73.4 MB in 1min 40s (734 kB/s) (Reading database ... 13352 files and directories currently installed.) 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Current default time zone: 'Etc/UTC' Local time is now: Sun Nov 6 20:27:38 UTC 2022. Universal Time is now: Sun Nov 6 20:27:38 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.30.1-1ubuntu1) ... Setting up perl-modules-5.36 (5.36.0-4ubuntu2) ... Setting up xz-utils (5.2.7-0.1) ... Setting up libpng16-16:s390x (1.6.38-2) ... Setting up libatomic1:s390x (12.2.0-9ubuntu1) ... Setting up libubsan1:s390x (12.2.0-9ubuntu1) ... Setting up libcrypt-dev:s390x (1:4.4.30-1) ... Setting up libasan8:s390x (12.2.0-9ubuntu1) ... Setting up sgml-base (1.31) ... Setting up libbinutils:s390x (2.39-8ubuntu2) ... Setting up libc-dev-bin (2.36-0ubuntu4) ... Setting up libjson-c5:s390x (0.16-2) ... Setting up readline-common (8.2-1.1) ... Setting up libcc1-0:s390x (12.2.0-9ubuntu1) ... Setting up libitm1:s390x (12.2.0-9ubuntu1) ... Setting up libgdbm6:s390x (1.23-3) ... Setting up libctf0:s390x (2.39-8ubuntu2) ... 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24626385 s390x lunar-proposed -c chroot:build-PACKAGEBUILD-24626385 --arch=s390x --dist=lunar-proposed --nolog kraken_1.1.1-4.dsc Initiating build PACKAGEBUILD-24626385 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:08:02 UTC 2022 s390x sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-s390x-005.buildd +==============================================================================+ | kraken 1.1.1-4 (s390x) Sun, 06 Nov 2022 20:27:39 +0000 | +==============================================================================+ Package: kraken Version: 1.1.1-4 Source Version: 1.1.1-4 Distribution: lunar-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24626385/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/kraken-uDVl00/resolver-ui0qxa' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- kraken_1.1.1-4.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/kraken-uDVl00/kraken-1.1.1' with '<>' I: NOTICE: Log filtering will replace 'build/kraken-uDVl00' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), jellyfish1, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), jellyfish1, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [379 B] Get:5 copy:/<>/apt_archive ./ Packages [460 B] Fetched 1796 B in 0s (133 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 sgml-base Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian jellyfish1 libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libmagic-mgc libmagic1 libpipeline1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian jellyfish1 libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libmagic-mgc libmagic1 libpipeline1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 18.5 MB of archives. After this operation, 67.3 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [674 B] Get:2 http://ftpmaster.internal/ubuntu lunar/main s390x libelf1 s390x 0.187-4 [54.3 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main s390x libicu71 s390x 71.1-3ubuntu1 [10.5 MB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libxml2 s390x 2.9.14+dfsg-1.1 [717 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main s390x bsdextrautils s390x 2.38-4ubuntu1 [71.6 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main s390x libmagic-mgc s390x 1:5.41-4 [258 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main s390x libmagic1 s390x 1:5.41-4 [84.8 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main s390x file s390x 1:5.41-4 [21.4 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main s390x gettext-base s390x 0.21-8 [37.8 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main s390x libuchardet0 s390x 0.0.7-1build2 [76.4 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main s390x groff-base s390x 1.22.4-8build1 [928 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libpipeline1 s390x 1.5.6-3 [23.4 kB] Get:13 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x man-db s390x 2.11.0-1 [1180 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main s390x m4 s390x 1.4.19-1 [243 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main s390x autoconf all 2.71-2 [338 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main s390x autotools-dev all 20220109.1 [44.9 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main s390x automake all 1:1.16.5-1.3 [558 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main s390x autopoint all 0.21-8 [421 kB] Get:19 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libdebhelper-perl all 13.10.1ubuntu1 [67.1 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main s390x libtool all 2.4.7-4 [166 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main s390x dh-autoreconf all 20 [16.1 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libsub-override-perl all 0.09-4 [8706 B] Get:24 http://ftpmaster.internal/ubuntu lunar/main s390x libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main s390x dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:26 http://ftpmaster.internal/ubuntu lunar/main s390x libdw1 s390x 0.187-4 [242 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main s390x debugedit s390x 1:5.0-5 [47.5 kB] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x dwz s390x 0.14+20220924-2 [108 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main s390x gettext s390x 0.21-8 [851 kB] Get:30 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main s390x po-debconf all 1.0.21+nmu1 [233 kB] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x debhelper all 13.10.1ubuntu1 [924 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/universe s390x jellyfish1 s390x 1.1.11-7 [174 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.5 MB in 27s (677 kB/s) Selecting previously unselected package libelf1:s390x. (Reading database ... 15320 files and directories currently installed.) Preparing to unpack .../00-libelf1_0.187-4_s390x.deb ... Unpacking libelf1:s390x (0.187-4) ... Selecting previously unselected package libicu71:s390x. Preparing to unpack .../01-libicu71_71.1-3ubuntu1_s390x.deb ... Unpacking libicu71:s390x (71.1-3ubuntu1) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../02-libxml2_2.9.14+dfsg-1.1_s390x.deb ... Unpacking libxml2:s390x (2.9.14+dfsg-1.1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../03-bsdextrautils_2.38-4ubuntu1_s390x.deb ... Unpacking bsdextrautils (2.38-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.41-4_s390x.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../05-libmagic1_1%3a5.41-4_s390x.deb ... Unpacking libmagic1:s390x (1:5.41-4) ... 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Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:s390x (0.187-4) ... Setting up libxml2:s390x (2.9.14+dfsg-1.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libdw1:s390x (0.187-4) ... Setting up gettext (0.21-8) ... Setting up libtool (2.4.7-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up debhelper (13.10.1ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:08:02 UTC 2022 s390x (s390x) Toolchain package versions: binutils_2.39-8ubuntu2 dpkg-dev_1.21.9ubuntu1 g++-12_12.2.0-9ubuntu1 gcc-12_12.2.0-9ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-9ubuntu1 libstdc++6_12.2.0-9ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.121ubuntu1 advancecomp_2.3-1 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-8 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2-1ubuntu2 binutils_2.39-8ubuntu2 binutils-common_2.39-8ubuntu2 binutils-s390x-linux-gnu_2.39-8ubuntu2 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 coreutils_8.32-4.1ubuntu1 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-9ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.10.1ubuntu1 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dpkg_1.21.9ubuntu1 dpkg-dev_1.21.9ubuntu1 dwz_0.14+20220924-2 e2fsprogs_1.46.5-2ubuntu2 fakeroot_1.30.1-1ubuntu1 file_1:5.41-4 findutils_4.9.0-3ubuntu1 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-9ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-9ubuntu1 gcc-12-base_12.2.0-9ubuntu1 gettext_0.21-8 gettext-base_0.21-8 gpg_2.2.40-1ubuntu1 gpg-agent_2.2.40-1ubuntu1 gpgconf_2.2.40-1ubuntu1 gpgv_2.2.40-1ubuntu1 grep_3.8-3 groff-base_1.22.4-8build1 gzip_1.12-1ubuntu1 hostname_3.23ubuntu2 init_1.65.2 init-system-helpers_1.65.2 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xz-utils_5.2.7-0.1 zlib1g_1:1.2.11.dfsg-4.1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: kraken Binary: kraken Architecture: any Version: 1.1.1-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://ccb.jhu.edu/software/kraken/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/kraken Vcs-Git: https://salsa.debian.org/med-team/kraken.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), jellyfish1 Package-List: kraken deb science optional arch=any Checksums-Sha1: 56e70d9b6a9d90bdabfb76f6bd5c14bb92f7bd82 76541 kraken_1.1.1.orig.tar.gz e44a12a51c7affa05d7605fc38bd6981e069d8b0 337236 kraken_1.1.1-4.debian.tar.xz Checksums-Sha256: 73e48f40418f92b8cf036ca1da727ca3941da9b78d4c285b81ba3267326ac4ee 76541 kraken_1.1.1.orig.tar.gz b3adb7c91b18d79310d4610d15df87c875ad4a5ec0db7ef90fa7072f7fb0f00e 337236 kraken_1.1.1-4.debian.tar.xz Files: 91b988e05ffaa128c7bf28816a41a910 76541 kraken_1.1.1.orig.tar.gz 59fcafd28b74c88dacd83b1a76cb4d20 337236 kraken_1.1.1-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmNm0K0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFBWRAAiiTM5dOVYShdnRiH8LSmszuMSvm+6XsL /sOkULU6QfXyFpiHL6liqUmPSBTQC+PxsisRV+2DGroIjbwyX2YKIMkVKwh0Mvug 3Xzu2/3MXf1BJtu0d9hrcbnFNSCEuExG7lcGoK3dzUHgw3AS5QeCt934jRUcRlWz 7luAtVvExWQXoG78xs/zEu+2y1P+XPF1diooDlc6TMBHykq3pLultqxnY4bwG4gn ZzZFSP7qsX6LjN8ON9lLYt08Da01gVtOJMXEeQRynqZUx0vrnCLAwyVXX8R6lxrF C8JmbE9YwBIb0dagDRIeNSA8tfgTGfnf4k1cMwNM+uK4jbBklA1nS7y2i3r2JyGt YPK5caZreQSu/yzzHV1vDiicY9BqWGYKFF2OjpRn7boaeZE7yu6sKPsJLIqsc8y0 c7fjTiyq41gb24/OqVqeTD7anfR9K9Z6JjJRPoJnnJBScGF1KHrGWau92XDOQXy1 Xq2vTP9d0F5fpGWUYct06lLwDIYzW8TyY/pyqLu1ZKtq+iqBHWjPPL32lEUohJJR xzteDtAPBtgK2zmL+T0i3qJDTxvihaHJkGYwfK+vwKRlDBPOjK9Hlrhr7KJkYJ75 EaeGKh8z6IeIGiXnJCGNqCvCNTOXrEzdQZoXLlqjSaIjj+TQlhkhaAQtTffVFX1t vhiXp1Vx4Q4= =ke2l -----END PGP SIGNATURE----- gpgv: Signature made Sat Nov 5 21:07:57 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./kraken_1.1.1-4.dsc dpkg-source: info: extracting kraken in /<> dpkg-source: info: unpacking kraken_1.1.1.orig.tar.gz dpkg-source: info: unpacking kraken_1.1.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_jellyfish1.patch dpkg-source: info: applying kraken_tmp_dir.patch dpkg-source: info: applying fix_reading_fasta.patch dpkg-source: info: applying hardening.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24626385 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24626385 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24626385 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package kraken dpkg-buildpackage: info: source version 1.1.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j4 clean make[1]: Entering directory '/<>/src' rm -f db_sort set_lcas classify make_seqid_to_taxid_map db_shrink kmer_estimator *.o make[1]: Leaving directory '/<>/src' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src dh_auto_build -a -O--sourcedirectory=src cd src && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/src' g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wall -fopenmp -O3 -c krakendb.cpp g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wall -fopenmp -O3 -c quickfile.cpp g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wall -fopenmp -O3 -c krakenutil.cpp g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wall -fopenmp -O3 -c seqreader.cpp g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wall -fopenmp -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now make_seqid_to_taxid_map.cpp quickfile.o -o make_seqid_to_taxid_map g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wall -fopenmp -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now db_sort.cpp krakendb.o quickfile.o -o db_sort g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wall -fopenmp -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now db_shrink.cpp krakendb.o quickfile.o -o db_shrink g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wall -fopenmp -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now set_lcas.cpp krakendb.o quickfile.o krakenutil.o seqreader.o -o set_lcas db_shrink.cpp: In function ‘main’: db_shrink.cpp:55:10: warning: ‘operator delete(void*, unsigned long)’ called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 55 | delete buffer; | ^~~~~~ db_shrink.cpp:46:28: note: returned from ‘operator new[](unsigned long)’ 46 | char *buffer = new char[8]; | ^ db_shrink.cpp:79:10: warning: ‘operator delete(void*, unsigned long)’ called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 79 | delete buffer; | ^~~~~~ db_shrink.cpp:58:32: note: returned from ‘operator new[](unsigned long)’ 58 | buffer = new char[header_size]; | ^ g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wall -fopenmp -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now classify.cpp krakendb.o quickfile.o krakenutil.o seqreader.o -o classify g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wall -fopenmp -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now kmer_estimator.cpp krakenutil.o seqreader.o -o kmer_estimator make[1]: Leaving directory '/<>/src' dh_auto_test -a -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src dh_installdirs -a -O--sourcedirectory=src debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- KRAKEN_DIR=/<>/debian/kraken/usr/lib/kraken cd src && make -j4 install DESTDIR=/<>/debian/kraken AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" KRAKEN_DIR=/<>/debian/kraken/usr/lib/kraken make[2]: Entering directory '/<>/src' cp db_sort set_lcas classify make_seqid_to_taxid_map db_shrink kmer_estimator /<>/debian/kraken/usr/lib/kraken/ make[2]: Leaving directory '/<>/src' ./install_kraken.sh /usr/lib/kraken kraken make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src dh_installman -a -O--sourcedirectory=src dh_installsystemduser -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src debian/rules override_dh_link make[1]: Entering directory '/<>' dh_link for file in /<>/debian/kraken/usr/lib/kraken/kraken* ; do \ if ! echo ${file} | grep -q '\.pm$' ; then \ ln -s ../lib/kraken/`basename ${file}` /<>/debian/kraken/usr/bin/`basename ${file}` ; \ fi \ done make[1]: Leaving directory '/<>' dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src dh_fixperms -a -O--sourcedirectory=src dh_missing -a -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src debugedit: debian/kraken/usr/lib/kraken/db_shrink: Unknown DWARF DW_FORM_0x1f21 0805f6e47044b3687d57e1f5c0440425f89bd2ba debugedit: debian/kraken/usr/lib/kraken/kmer_estimator: Unknown DWARF DW_FORM_0x1f20 ed8e3c51420e73d7eb73fd35039a7104a9bd1009 debugedit: debian/kraken/usr/lib/kraken/set_lcas: Unknown DWARF DW_FORM_0x1f20 4d95373821b62bec2173ace23c5e7637a5f4147d debugedit: debian/kraken/usr/lib/kraken/db_sort: Unknown DWARF DW_FORM_0x1f20 62b2a72f939a99f1dd0fd5bbac04e75d20a68afa debugedit: debian/kraken/usr/lib/kraken/classify: Unknown DWARF DW_FORM_0x1f20 a3ab4eee73af6d3d247c269c77227547663547e3 debugedit: debian/kraken/usr/lib/kraken/make_seqid_to_taxid_map: Unknown DWARF DW_FORM_0x1f20 769c43479c07d044e21720f1e4c2a61a4e971e56 dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dpkg-gencontrol: warning: package kraken: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package kraken: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing kraken (in debian/kraken); do_strip: , oemstrip: pkgstriptranslations: processing kraken-dbgsym (in debian/.debhelper/kraken/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/kraken/DEBIAN/control, package kraken, directory debian/kraken pkgstripfiles: processing control file: debian/.debhelper/kraken/dbgsym-root/DEBIAN/control, package kraken-dbgsym, directory debian/.debhelper/kraken/dbgsym-root dpkg-deb: building package 'kraken-dbgsym' in 'debian/.debhelper/scratch-space/build-kraken/kraken-dbgsym_1.1.1-4_s390x.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package kraken ... xargs: warning: options --max-lines and --replace/-I/-i are mutually exclusive, ignoring previous --max-lines value o pkgstripfiles: PNG optimization (1/0) for package kraken took 0 s dpkg-deb: building package 'kraken' in '../kraken_1.1.1-4_s390x.deb'. Renaming kraken-dbgsym_1.1.1-4_s390x.deb to kraken-dbgsym_1.1.1-4_s390x.ddeb dpkg-genbuildinfo --build=any -O../kraken_1.1.1-4_s390x.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../kraken_1.1.1-4_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-11-06T20:28:25Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kraken_1.1.1-4_s390x.changes: ----------------------------- Format: 1.8 Date: Sat, 05 Nov 2022 21:58:35 +0100 Source: kraken Binary: kraken Built-For-Profiles: noudeb Architecture: s390x Version: 1.1.1-4 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: kraken - assigning taxonomic labels to short DNA sequences Changes: kraken (1.1.1-4) unstable; urgency=medium . * Fix watch file * Standards-Version: 4.6.1 (routine-update) * lintian-overrides (see lintian bug #1017966) Checksums-Sha1: a1b0482fff45ace082e059d9dd23d4ba12f4cb9a 635870 kraken-dbgsym_1.1.1-4_s390x.ddeb 69ad2ad98b8eccbc815279ffcc713d06dd79e7fb 5511 kraken_1.1.1-4_s390x.buildinfo 7620dd2c300423f99882ba165a53191869eddfc8 755128 kraken_1.1.1-4_s390x.deb Checksums-Sha256: f75454ba7c9bda6b99b3095aeaae25536e395ebf029f34be64d8812aa5d76241 635870 kraken-dbgsym_1.1.1-4_s390x.ddeb 35d94fc529affa229112aa66b665142ec1b866727c3c0ad35b16532f47b6d224 5511 kraken_1.1.1-4_s390x.buildinfo a85647443dad92dbce999fba59ac08a7f6bc68f35e062c89cbf73055870bfe2e 755128 kraken_1.1.1-4_s390x.deb Files: 8a8bbfe630327a11d6a86eb42f7ff081 635870 debug optional kraken-dbgsym_1.1.1-4_s390x.ddeb ae9ded3fc1592b3ac3382235d97ecdd3 5511 science optional kraken_1.1.1-4_s390x.buildinfo 99d2ad165bf110443329e44590efa69e 755128 science optional kraken_1.1.1-4_s390x.deb /<>/kraken_1.1.1-4_s390x.changes.new could not be renamed to /<>/kraken_1.1.1-4_s390x.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: kraken Binary: kraken kraken-dbgsym Architecture: s390x Version: 1.1.1-4 Checksums-Md5: 8a8bbfe630327a11d6a86eb42f7ff081 635870 kraken-dbgsym_1.1.1-4_s390x.ddeb 99d2ad165bf110443329e44590efa69e 755128 kraken_1.1.1-4_s390x.deb Checksums-Sha1: a1b0482fff45ace082e059d9dd23d4ba12f4cb9a 635870 kraken-dbgsym_1.1.1-4_s390x.ddeb 7620dd2c300423f99882ba165a53191869eddfc8 755128 kraken_1.1.1-4_s390x.deb Checksums-Sha256: f75454ba7c9bda6b99b3095aeaae25536e395ebf029f34be64d8812aa5d76241 635870 kraken-dbgsym_1.1.1-4_s390x.ddeb a85647443dad92dbce999fba59ac08a7f6bc68f35e062c89cbf73055870bfe2e 755128 kraken_1.1.1-4_s390x.deb Build-Origin: Ubuntu Build-Architecture: s390x Build-Date: Sun, 06 Nov 2022 20:28:25 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-8), autotools-dev (= 20220109.1), base-files (= 12.3ubuntu1), base-passwd (= 3.6.1), bash (= 5.2-1ubuntu2), binutils (= 2.39-8ubuntu2), binutils-common (= 2.39-8ubuntu2), binutils-s390x-linux-gnu (= 2.39-8ubuntu2), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-9ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.10.1ubuntu1), debianutils (= 5.7-0.4), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), dpkg (= 1.21.9ubuntu1), dpkg-dev (= 1.21.9ubuntu1), dwz (= 0.14+20220924-2), file (= 1:5.41-4), findutils (= 4.9.0-3ubuntu1), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-9ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-9ubuntu1), gcc-12-base (= 12.2.0-9ubuntu1), gettext (= 0.21-8), gettext-base (= 0.21-8), grep (= 3.8-3), groff-base (= 1.22.4-8build1), gzip (= 1.12-1ubuntu1), hostname (= 3.23ubuntu2), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), jellyfish1 (= 1.1.11-7), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 12.2.0-9ubuntu1), libatomic1 (= 12.2.0-9ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1ubuntu2), libaudit1 (= 1:3.0.7-1ubuntu2), libbinutils (= 2.39-8ubuntu2), libblkid1 (= 2.38-4ubuntu1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu4), libc-dev-bin (= 2.36-0ubuntu4), libc6 (= 2.36-0ubuntu4), libc6-dev (= 2.36-0ubuntu4), libcap-ng0 (= 0.8.3-1build1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.2.0-9ubuntu1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.30-1), libcrypt1 (= 1:4.4.30-1), libctf-nobfd0 (= 2.39-8ubuntu2), libctf0 (= 2.39-8ubuntu2), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264ubuntu1), libdebhelper-perl (= 13.10.1ubuntu1), libdpkg-perl (= 1.21.9ubuntu1), libdw1 (= 0.187-4), libelf1 (= 0.187-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-12-dev (= 12.2.0-9ubuntu1), libgcc-s1 (= 12.2.0-9ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.2.1+dfsg1-1ubuntu2), libgomp1 (= 12.2.0-9ubuntu1), libgpg-error0 (= 1.46-1), libgssapi-krb5-2 (= 1.20-1), libicu71 (= 71.1-3ubuntu1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-9ubuntu1), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.3-1), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.2.7-0.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libpam-modules (= 1.5.2-2ubuntu1), libpam-modules-bin (= 1.5.2-2ubuntu1), libpam-runtime (= 1.5.2-2ubuntu1), libpam0g (= 1.5.2-2ubuntu1), libpcre2-8-0 (= 10.40-1ubuntu1), libperl5.36 (= 5.36.0-4ubuntu2), libpipeline1 (= 1.5.6-3), libseccomp2 (= 2.5.4-1ubuntu2), libselinux1 (= 3.4-1build1), libsmartcols1 (= 2.38-4ubuntu1), libssl3 (= 3.0.5-2ubuntu1), libstdc++-12-dev (= 12.2.0-9ubuntu1), libstdc++6 (= 12.2.0-9ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 251.4-1ubuntu7), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-4), libubsan1 (= 12.2.0-9ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 251.4-1ubuntu7), libunistring2 (= 1.0-2), libuuid1 (= 2.38-4ubuntu1), libxml2 (= 2.9.14+dfsg-1.1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-23.24), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.2ubuntu1), lto-disabled-list (= 35), m4 (= 1.4.19-1), make (= 4.3-4.1build1), man-db (= 2.11.0-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7build2), perl (= 5.36.0-4ubuntu2), perl-base (= 5.36.0-4ubuntu2), perl-modules-5.36 (= 5.36.0-4ubuntu2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.04-1ubuntu1), tar (= 1.34+dfsg-1build3), usrmerge (= 29ubuntu2), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.7-0.1), zlib1g (= 1:1.2.11.dfsg-4.1ubuntu2) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1667681915" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kraken_1.1.1-4_s390x.deb ------------------------ new Debian package, version 2.0. size 755128 bytes: control archive=2690 bytes. 1366 bytes, 26 lines control 4306 bytes, 59 lines md5sums Package: kraken Version: 1.1.1-4 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1445 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libgomp1 (>= 6), libstdc++6 (>= 5.2), jellyfish1 Section: science Priority: optional Homepage: http://ccb.jhu.edu/software/kraken/ Description: assigning taxonomic labels to short DNA sequences Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm. . In its fastest mode of operation, for a simulated metagenome of 100 bp reads, Kraken processed over 4 million reads per minute on a single core, over 900 times faster than Megablast and over 11 times faster than the abundance estimation program MetaPhlAn. Kraken's accuracy is comparable with Megablast, with slightly lower sensitivity and very high precision. drwxr-xr-x root/root 0 2022-11-05 20:58 ./ drwxr-xr-x root/root 0 2022-11-05 20:58 ./usr/ drwxr-xr-x root/root 0 2022-11-05 20:58 ./usr/bin/ lrwxrwxrwx root/root 0 2022-11-05 20:58 ./usr/bin/kraken -> ../lib/kraken/kraken lrwxrwxrwx root/root 0 2022-11-05 20:58 ./usr/bin/kraken-build -> ../lib/kraken/kraken-build lrwxrwxrwx root/root 0 2022-11-05 20:58 ./usr/bin/kraken-filter -> ../lib/kraken/kraken-filter lrwxrwxrwx root/root 0 2022-11-05 20:58 ./usr/bin/kraken-mpa-report -> ../lib/kraken/kraken-mpa-report lrwxrwxrwx root/root 0 2022-11-05 20:58 ./usr/bin/kraken-report -> ../lib/kraken/kraken-report lrwxrwxrwx root/root 0 2022-11-05 20:58 ./usr/bin/kraken-translate -> ../lib/kraken/kraken-translate drwxr-xr-x root/root 0 2022-11-05 20:58 ./usr/lib/ drwxr-xr-x root/root 0 2022-11-05 20:58 ./usr/lib/kraken/ -rwxr-xr-x root/root 1753 2022-11-05 20:58 ./usr/lib/kraken/add_to_library.sh -rwxr-xr-x root/root 7111 2022-11-05 20:58 ./usr/lib/kraken/build_kraken_db.sh -rwxr-xr-x root/root 1268 2022-11-05 20:58 ./usr/lib/kraken/check_for_jellyfish.sh -rwxr-xr-x root/root 71952 2022-11-05 20:58 ./usr/lib/kraken/classify -rwxr-xr-x root/root 1388 2022-11-05 20:58 ./usr/lib/kraken/clean_db.sh -rwxr-xr-x root/root 1588 2022-11-05 20:58 ./usr/lib/kraken/convert_gb_to_fa.pl -rwxr-xr-x root/root 1895 2022-11-05 20:58 ./usr/lib/kraken/cp_into_tempfile.pl -rwxr-xr-x root/root 14512 2022-11-05 20:58 ./usr/lib/kraken/db_shrink -rwxr-xr-x root/root 22720 2022-11-05 20:58 ./usr/lib/kraken/db_sort -rwxr-xr-x root/root 3089 2022-11-05 20:58 ./usr/lib/kraken/download_genomic_library.sh -rwxr-xr-x root/root 1316 2022-11-05 20:58 ./usr/lib/kraken/download_taxonomy.sh -rwxr-xr-x root/root 26888 2022-11-05 20:58 ./usr/lib/kraken/kmer_estimator -rwxr-xr-x root/root 8815 2022-11-05 20:58 ./usr/lib/kraken/kraken -rwxr-xr-x root/root 8216 2022-11-05 20:58 ./usr/lib/kraken/kraken-build -rwxr-xr-x root/root 3715 2022-11-05 20:58 ./usr/lib/kraken/kraken-filter -rwxr-xr-x root/root 5377 2022-11-05 20:58 ./usr/lib/kraken/kraken-mpa-report -rwxr-xr-x root/root 4520 2022-11-05 20:58 ./usr/lib/kraken/kraken-report -rwxr-xr-x root/root 4009 2022-11-05 20:58 ./usr/lib/kraken/kraken-translate -rw-r--r-- root/root 3416 2022-11-05 20:58 ./usr/lib/kraken/krakenlib.pm -rwxr-xr-x root/root 1785 2022-11-05 20:58 ./usr/lib/kraken/lookup_accession_numbers.pl -rwxr-xr-x root/root 22704 2022-11-05 20:58 ./usr/lib/kraken/make_seqid_to_taxid_map -rwxr-xr-x root/root 5430 2022-11-05 20:58 ./usr/lib/kraken/read_merger.pl -rwxr-xr-x root/root 1448 2022-11-05 20:58 ./usr/lib/kraken/report_gi_numbers.pl -rwxr-xr-x root/root 5556 2022-11-05 20:58 ./usr/lib/kraken/rsync_from_ncbi.pl -rwxr-xr-x root/root 1661 2022-11-05 20:58 ./usr/lib/kraken/scan_fasta_file.pl -rwxr-xr-x root/root 47360 2022-11-05 20:58 ./usr/lib/kraken/set_lcas -rwxr-xr-x root/root 1815 2022-11-05 20:58 ./usr/lib/kraken/shrink_db.sh 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+------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: 13912 Build-Time: 15 Distribution: lunar-proposed Host Architecture: s390x Install-Time: 31 Job: kraken_1.1.1-4.dsc Machine Architecture: s390x Package: kraken Package-Time: 46 Source-Version: 1.1.1-4 Space: 13912 Status: successful Version: 1.1.1-4 -------------------------------------------------------------------------------- Finished at 2022-11-06T20:28:25Z Build needed 00:00:46, 13912k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-24626385 Scanning for processes to kill in build PACKAGEBUILD-24626385