https://launchpad.net/ubuntu/+source/lammps/0~20180510.gitaa1d815fe-4ubuntu1/+build/15030946 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-003 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_163 python-lpbuildd_163 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 19 Jun 10:56:38 ntpdate[1859]: adjust time server 10.211.37.1 offset -0.004847 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15030946 /home/buildd/filecache-default/b7d07d6b68ae68badf26a018a3a0291d50e41e42 Creating target for build PACKAGEBUILD-15030946 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15030946 Starting target for build PACKAGEBUILD-15030946 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15030946 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15030946 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15030946 Updating target for build PACKAGEBUILD-15030946 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main amd64 Packages [1013 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe amd64 Packages [8667 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5006 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 Packages [89.0 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [44.7 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 Packages [986 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [474 kB] Fetched 17.3 MB in 3s (5096 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libncursesw5 libprocps6 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libncurses6 libncursesw6 libprocps7 libtinfo6 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils build-essential cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libitm1 libkmod2 liblsan0 liblz4-1 libmount1 libmpx2 libncurses5 libncursesw5 libnpth0 libp11-kit0 libperl5.26 libquadmath0 libreadline7 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev mount ncurses-base ncurses-bin perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common systemd systemd-sysv tar tzdata util-linux 98 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 54.6 MB of archives. After this operation, 2041 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main amd64 base-files amd64 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtinfo6 amd64 6.1+20180210-4ubuntu1 [84.0 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main amd64 debianutils amd64 4.8.6 [85.6 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main amd64 bash amd64 4.4.18-2ubuntu2 [614 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main amd64 bsdutils amd64 1:2.32-0.1ubuntu1 [60.4 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main amd64 tar amd64 1.30+dfsg-2 [240 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main amd64 dpkg amd64 1.19.0.5ubuntu3 [1140 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main amd64 libext2fs2 amd64 1.44.2-1 [157 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main amd64 e2fsprogs amd64 1.44.2-1 [390 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main amd64 ncurses-bin amd64 6.1+20180210-4ubuntu1 [163 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 perl-modules-5.26 all 5.26.2-6 [2762 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libperl5.26 amd64 5.26.2-6 [3545 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 perl amd64 5.26.2-6 [202 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 perl-base amd64 5.26.2-6 [1391 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main amd64 libuuid1 amd64 2.32-0.1ubuntu1 [19.9 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main amd64 libblkid1 amd64 2.32-0.1ubuntu1 [128 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main amd64 libfdisk1 amd64 2.32-0.1ubuntu1 [167 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncursesw6 amd64 6.1+20180210-4ubuntu1 [130 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libselinux1 amd64 2.8-1 [68.6 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmount1 amd64 2.32-0.1ubuntu1 [139 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsmartcols1 amd64 2.32-0.1ubuntu1 [86.0 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main amd64 fdisk amd64 2.32-0.1ubuntu1 [109 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main amd64 util-linux amd64 2.32-0.1ubuntu1 [916 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main amd64 base-passwd amd64 3.5.45 [47.4 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main amd64 ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main amd64 libquadmath0 amd64 8.1.0-8ubuntu1 [133 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main amd64 libitm1 amd64 8.1.0-8ubuntu1 [28.1 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main amd64 gcc-8-base amd64 8.1.0-8ubuntu1 [18.7 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgcc1 amd64 1:8.1.0-8ubuntu1 [40.7 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmpx2 amd64 8.1.0-8ubuntu1 [11.7 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main amd64 liblsan0 amd64 8.1.0-8ubuntu1 [132 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtsan0 amd64 8.1.0-8ubuntu1 [288 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcc1-0 amd64 8.1.0-8ubuntu1 [39.5 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main amd64 libatomic1 amd64 8.1.0-8ubuntu1 [9068 B] Get:35 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgomp1 amd64 8.1.0-8ubuntu1 [76.4 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main amd64 libstdc++6 amd64 8.1.0-8ubuntu1 [399 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 liblz4-1 amd64 1.8.2-1ubuntu1 [86.1 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libudev1 amd64 238-5ubuntu1 [56.0 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main amd64 libapt-pkg5.0 amd64 1.7.0~alpha0ubuntu1 [801 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 debconf all 1.5.67 [124 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main amd64 adduser all 3.117ubuntu1 [163 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgpg-error0 amd64 1.31-1 [56.0 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgcrypt20 amd64 1.8.2-2ubuntu1 [417 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gpgv amd64 2.2.8-1ubuntu1 [197 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main amd64 apt amd64 1.7.0~alpha0ubuntu1 [1166 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main amd64 libaudit-common all 1:2.8.3-1ubuntu1 [4052 B] Get:47 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcap-ng0 amd64 0.7.9-1 [11.3 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main amd64 libaudit1 amd64 1:2.8.3-1ubuntu1 [38.8 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libkmod2 amd64 25-1ubuntu1 [41.6 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main amd64 mount amd64 2.32-0.1ubuntu1 [104 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncurses6 amd64 6.1+20180210-4ubuntu1 [101 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main amd64 libprocps7 amd64 2:3.3.15-2ubuntu1 [32.6 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main amd64 procps amd64 2:3.3.15-2ubuntu1 [231 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 systemd amd64 238-5ubuntu1 [2932 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libsystemd0 amd64 238-5ubuntu1 [209 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 systemd-sysv amd64 238-5ubuntu1 [13.5 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcom-err2 amd64 1.44.2-1 [9212 B] Get:58 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsepol1 amd64 2.8-1 [252 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libsemanage-common all 2.8-1 [7020 B] Get:60 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libsemanage1 amd64 2.8-1 [85.3 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main amd64 libss2 amd64 1.44.2-1 [11.1 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgmp10 amd64 2:6.1.2+dfsg-3 [240 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main amd64 libp11-kit0 amd64 0.23.12-2 [184 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtasn1-6 amd64 4.13-3 [36.1 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncurses5 amd64 6.1+20180210-4ubuntu1 [95.2 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncursesw5 amd64 6.1+20180210-4ubuntu1 [117 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtinfo5 amd64 6.1+20180210-4ubuntu1 [79.3 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main amd64 libargon2-0 amd64 0~20161029-2 [19.9 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main amd64 readline-common all 7.0-5 [52.2 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main amd64 libreadline7 amd64 7.0-5 [123 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main amd64 libslang2 amd64 2.3.2-1ubuntu1 [425 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libsqlite3-0 amd64 3.24.0-1 [506 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main amd64 tzdata all 2018e-1 [188 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main amd64 binutils-x86-64-linux-gnu amd64 2.30-21ubuntu1 [1854 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main amd64 binutils-common amd64 2.30-21ubuntu1 [193 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main amd64 binutils amd64 2.30-21ubuntu1 [3392 B] Get:77 http://ftpmaster.internal/ubuntu cosmic/main amd64 libbinutils amd64 2.30-21ubuntu1 [503 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main amd64 libasan4 amd64 7.3.0-23ubuntu2 [358 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main amd64 libubsan0 amd64 7.3.0-23ubuntu2 [126 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcilkrts5 amd64 7.3.0-23ubuntu2 [42.5 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main amd64 g++-7 amd64 7.3.0-23ubuntu2 [7564 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic/main amd64 gcc-7 amd64 7.3.0-23ubuntu2 [7446 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main amd64 libstdc++-7-dev amd64 7.3.0-23ubuntu2 [1462 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgcc-7-dev amd64 7.3.0-23ubuntu2 [2378 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main amd64 cpp-7 amd64 7.3.0-23ubuntu2 [6735 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main amd64 gcc-7-base amd64 7.3.0-23ubuntu2 [18.6 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main amd64 cpp amd64 4:7.3.0-3ubuntu3 [27.5 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main amd64 gcc amd64 4:7.3.0-3ubuntu3 [5216 B] Get:89 http://ftpmaster.internal/ubuntu cosmic/main amd64 g++ amd64 4:7.3.0-3ubuntu3 [1592 B] Get:90 http://ftpmaster.internal/ubuntu cosmic/main amd64 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main amd64 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic/main amd64 build-essential amd64 12.5ubuntu2 [4732 B] Get:93 http://ftpmaster.internal/ubuntu cosmic/main amd64 e2fslibs amd64 1.44.2-1 [2700 B] Get:94 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 pinentry-curses amd64 1.1.0-1build1 [35.8 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic/main amd64 libnpth0 amd64 1.5-4 [7708 B] Get:96 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gpg amd64 2.2.8-1ubuntu1 [470 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gpgconf amd64 2.2.8-1ubuntu1 [122 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gpg-agent amd64 2.2.8-1ubuntu1 [228 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcomerr2 amd64 1.44.2-1 [2700 B] Get:100 http://ftpmaster.internal/ubuntu cosmic/main amd64 libusb-0.1-4 amd64 2:0.1.12-32 [17.4 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 linux-libc-dev amd64 4.15.0-24.26 [998 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic/main amd64 pkgbinarymangler all 139 [52.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 54.6 MB in 1s (47.7 MB/s) (Reading database ... 12637 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_amd64.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:amd64. (Reading database ... 12637 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-4ubuntu1_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20180210-4ubuntu1) ... Setting up libtinfo6:amd64 (6.1+20180210-4ubuntu1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6_amd64.deb ... Unpacking debianutils (4.8.6) over (4.8.4) ... Setting up debianutils (4.8.6) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_amd64.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.32-0.1ubuntu1_amd64.deb ... Unpacking bsdutils (1:2.32-0.1ubuntu1) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.32-0.1ubuntu1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-2_amd64.deb ... Unpacking tar (1.30+dfsg-2) over (1.29b-2) ... Setting up tar (1.30+dfsg-2) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_amd64.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.2-1_amd64.deb ... Unpacking libext2fs2:amd64 (1.44.2-1) over (1.44.1-1) ... Setting up libext2fs2:amd64 (1.44.2-1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.2-1_amd64.deb ... Unpacking e2fsprogs (1.44.2-1) over (1.44.1-1) ... Setting up e2fsprogs (1.44.2-1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20180210-4ubuntu1_amd64.deb ... Unpacking ncurses-bin (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Setting up ncurses-bin (6.1+20180210-4ubuntu1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../perl_5.26.2-6_amd64.deb ... Unpacking perl (5.26.2-6) over (5.26.1-6) ... Preparing to unpack .../perl-modules-5.26_5.26.2-6_all.deb ... Unpacking perl-modules-5.26 (5.26.2-6) over (5.26.1-6) ... Preparing to unpack .../libperl5.26_5.26.2-6_amd64.deb ... Unpacking libperl5.26:amd64 (5.26.2-6) over (5.26.1-6) ... Preparing to unpack .../perl-base_5.26.2-6_amd64.deb ... Unpacking perl-base (5.26.2-6) over (5.26.1-6) ... Setting up perl-base (5.26.2-6) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../libuuid1_2.32-0.1ubuntu1_amd64.deb ... Unpacking libuuid1:amd64 (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libuuid1:amd64 (2.32-0.1ubuntu1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../libblkid1_2.32-0.1ubuntu1_amd64.deb ... Unpacking libblkid1:amd64 (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libblkid1:amd64 (2.32-0.1ubuntu1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.32-0.1ubuntu1_amd64.deb ... Unpacking libfdisk1:amd64 (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libfdisk1:amd64 (2.32-0.1ubuntu1) ... Selecting previously unselected package libncursesw6:amd64. (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20180210-4ubuntu1_amd64.deb ... Unpacking libncursesw6:amd64 (6.1+20180210-4ubuntu1) ... Setting up libncursesw6:amd64 (6.1+20180210-4ubuntu1) ... (Reading database ... 12655 files and directories currently installed.) Preparing to unpack .../libselinux1_2.8-1_amd64.deb ... Unpacking libselinux1:amd64 (2.8-1) over (2.7-2build2) ... Setting up libselinux1:amd64 (2.8-1) ... (Reading database ... 12655 files and directories currently installed.) Preparing to unpack .../libmount1_2.32-0.1ubuntu1_amd64.deb ... Unpacking libmount1:amd64 (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libmount1:amd64 (2.32-0.1ubuntu1) ... (Reading database ... 12655 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.32-0.1ubuntu1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libsmartcols1:amd64 (2.32-0.1ubuntu1) ... (Reading database ... 12655 files and directories currently installed.) Preparing to unpack .../fdisk_2.32-0.1ubuntu1_amd64.deb ... Unpacking fdisk (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up fdisk (2.32-0.1ubuntu1) ... (Reading database ... 12655 files and directories currently installed.) Preparing to unpack .../util-linux_2.32-0.1ubuntu1_amd64.deb ... Unpacking util-linux (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up util-linux (2.32-0.1ubuntu1) ... (Reading database ... 12655 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.45_amd64.deb ... Unpacking base-passwd (3.5.45) over (3.5.44) ... Setting up base-passwd (3.5.45) ... (Reading database ... 12655 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20180210-4ubuntu1_all.deb ... Unpacking ncurses-base (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Setting up ncurses-base (6.1+20180210-4ubuntu1) ... (Reading database ... 12657 files and directories currently installed.) Preparing to unpack .../libquadmath0_8.1.0-8ubuntu1_amd64.deb ... Unpacking libquadmath0:amd64 (8.1.0-8ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libitm1_8.1.0-8ubuntu1_amd64.deb ... Unpacking libitm1:amd64 (8.1.0-8ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../gcc-8-base_8.1.0-8ubuntu1_amd64.deb ... Unpacking gcc-8-base:amd64 (8.1.0-8ubuntu1) over (8-20180414-1ubuntu2) ... Setting up gcc-8-base:amd64 (8.1.0-8ubuntu1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.1.0-8ubuntu1_amd64.deb ... Unpacking libgcc1:amd64 (1:8.1.0-8ubuntu1) over (1:8-20180414-1ubuntu2) ... Setting up libgcc1:amd64 (1:8.1.0-8ubuntu1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../0-libmpx2_8.1.0-8ubuntu1_amd64.deb ... Unpacking libmpx2:amd64 (8.1.0-8ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../1-liblsan0_8.1.0-8ubuntu1_amd64.deb ... Unpacking liblsan0:amd64 (8.1.0-8ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../2-libtsan0_8.1.0-8ubuntu1_amd64.deb ... Unpacking libtsan0:amd64 (8.1.0-8ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../3-libcc1-0_8.1.0-8ubuntu1_amd64.deb ... Unpacking libcc1-0:amd64 (8.1.0-8ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../4-libatomic1_8.1.0-8ubuntu1_amd64.deb ... Unpacking libatomic1:amd64 (8.1.0-8ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../5-libgomp1_8.1.0-8ubuntu1_amd64.deb ... Unpacking libgomp1:amd64 (8.1.0-8ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../6-libstdc++6_8.1.0-8ubuntu1_amd64.deb ... Unpacking libstdc++6:amd64 (8.1.0-8ubuntu1) over (8-20180414-1ubuntu2) ... Setting up libstdc++6:amd64 (8.1.0-8ubuntu1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.8.2-1ubuntu1_amd64.deb ... Unpacking liblz4-1:amd64 (1.8.2-1ubuntu1) over (0.0~r131-2ubuntu3) ... Setting up liblz4-1:amd64 (1.8.2-1ubuntu1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../libudev1_238-5ubuntu1_amd64.deb ... Unpacking libudev1:amd64 (238-5ubuntu1) over (237-3ubuntu10) ... Setting up libudev1:amd64 (238-5ubuntu1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.7.0~alpha0ubuntu1_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.7.0~alpha0ubuntu1) over (1.6.1) ... Setting up libapt-pkg5.0:amd64 (1.7.0~alpha0ubuntu1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../debconf_1.5.67_all.deb ... Unpacking debconf (1.5.67) over (1.5.66) ... Setting up debconf (1.5.67) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../adduser_3.117ubuntu1_all.deb ... Unpacking adduser (3.117ubuntu1) over (3.116ubuntu1) ... Setting up adduser (3.117ubuntu1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.31-1_amd64.deb ... Unpacking libgpg-error0:amd64 (1.31-1) over (1.27-6) ... Setting up libgpg-error0:amd64 (1.31-1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.2-2ubuntu1_amd64.deb ... Unpacking libgcrypt20:amd64 (1.8.2-2ubuntu1) over (1.8.1-4ubuntu1) ... Setting up libgcrypt20:amd64 (1.8.2-2ubuntu1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.8-1ubuntu1_amd64.deb ... Unpacking gpgv (2.2.8-1ubuntu1) over (2.2.4-1ubuntu1) ... Setting up gpgv (2.2.8-1ubuntu1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../apt_1.7.0~alpha0ubuntu1_amd64.deb ... Unpacking apt (1.7.0~alpha0ubuntu1) over (1.6.1) ... Setting up apt (1.7.0~alpha0ubuntu1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.8.3-1ubuntu1_all.deb ... Unpacking libaudit-common (1:2.8.3-1ubuntu1) over (1:2.8.2-1ubuntu1) ... Setting up libaudit-common (1:2.8.3-1ubuntu1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.9-1) over (0.7.7-3.1) ... Setting up libcap-ng0:amd64 (0.7.9-1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.3-1ubuntu1_amd64.deb ... Unpacking libaudit1:amd64 (1:2.8.3-1ubuntu1) over (1:2.8.2-1ubuntu1) ... Setting up libaudit1:amd64 (1:2.8.3-1ubuntu1) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../0-libkmod2_25-1ubuntu1_amd64.deb ... Unpacking libkmod2:amd64 (25-1ubuntu1) over (24-1ubuntu3) ... Preparing to unpack .../1-mount_2.32-0.1ubuntu1_amd64.deb ... Unpacking mount (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../2-libncurses6_6.1+20180210-4ubuntu1_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20180210-4ubuntu1) ... Selecting previously unselected package libprocps7:amd64. Preparing to unpack .../3-libprocps7_2%3a3.3.15-2ubuntu1_amd64.deb ... Unpacking libprocps7:amd64 (2:3.3.15-2ubuntu1) ... Preparing to unpack .../4-procps_2%3a3.3.15-2ubuntu1_amd64.deb ... Unpacking procps (2:3.3.15-2ubuntu1) over (2:3.3.12-3ubuntu1) ... Preparing to unpack .../5-systemd_238-5ubuntu1_amd64.deb ... Unpacking systemd (238-5ubuntu1) over (237-3ubuntu10) ... Preparing to unpack .../6-libsystemd0_238-5ubuntu1_amd64.deb ... Unpacking libsystemd0:amd64 (238-5ubuntu1) over (237-3ubuntu10) ... Setting up libsystemd0:amd64 (238-5ubuntu1) ... Setting up libkmod2:amd64 (25-1ubuntu1) ... Setting up mount (2.32-0.1ubuntu1) ... Setting up libncurses6:amd64 (6.1+20180210-4ubuntu1) ... Setting up libprocps7:amd64 (2:3.3.15-2ubuntu1) ... Setting up procps (2:3.3.15-2ubuntu1) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.conf ... Installing new version of config file /etc/sysctl.d/10-network-security.conf ... Setting up systemd (238-5ubuntu1) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... (Reading database ... 12679 files and directories currently installed.) Preparing to unpack .../systemd-sysv_238-5ubuntu1_amd64.deb ... Unpacking systemd-sysv (238-5ubuntu1) over (237-3ubuntu10) ... Preparing to unpack .../libcom-err2_1.44.2-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.44.2-1) over (1.44.1-1) ... Setting up libcom-err2:amd64 (1.44.2-1) ... (Reading database ... 12679 files and directories currently installed.) Preparing to unpack .../libsepol1_2.8-1_amd64.deb ... Unpacking libsepol1:amd64 (2.8-1) over (2.7-1) ... Setting up libsepol1:amd64 (2.8-1) ... (Reading database ... 12679 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.8-1_all.deb ... Unpacking libsemanage-common (2.8-1) over (2.7-2build2) ... Setting up libsemanage-common (2.8-1) ... (Reading database ... 12679 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.8-1_amd64.deb ... Unpacking libsemanage1:amd64 (2.8-1) over (2.7-2build2) ... Setting up libsemanage1:amd64 (2.8-1) ... (Reading database ... 12679 files and directories currently installed.) Preparing to unpack .../libss2_1.44.2-1_amd64.deb ... Unpacking libss2:amd64 (1.44.2-1) over (1.44.1-1) ... Setting up libss2:amd64 (1.44.2-1) ... (Reading database ... 12679 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.2+dfsg-3_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.2+dfsg-3) over (2:6.1.2+dfsg-2) ... Setting up libgmp10:amd64 (2:6.1.2+dfsg-3) ... (Reading database ... 12679 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.12-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.12-2) over (0.23.9-2) ... Setting up libp11-kit0:amd64 (0.23.12-2) ... (Reading database ... 12679 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.13-3_amd64.deb ... Unpacking libtasn1-6:amd64 (4.13-3) over (4.13-2) ... Setting up libtasn1-6:amd64 (4.13-3) ... (Reading database ... 12679 files and directories currently installed.) Preparing to unpack .../libncurses5_6.1+20180210-4ubuntu1_amd64.deb ... Unpacking libncurses5:amd64 (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Preparing to unpack .../libncursesw5_6.1+20180210-4ubuntu1_amd64.deb ... Unpacking libncursesw5:amd64 (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Preparing to unpack .../libtinfo5_6.1+20180210-4ubuntu1_amd64.deb ... Unpacking libtinfo5:amd64 (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Setting up libtinfo5:amd64 (6.1+20180210-4ubuntu1) ... (Reading database ... 12677 files and directories currently installed.) Preparing to unpack .../00-libargon2-0_0~20161029-2_amd64.deb ... Unpacking libargon2-0:amd64 (0~20161029-2) over (0~20161029-1.1) ... Preparing to unpack .../01-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) over (7.0-3) ... Preparing to unpack .../02-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) over (7.0-3) ... Preparing to unpack .../03-libslang2_2.3.2-1ubuntu1_amd64.deb ... Unpacking libslang2:amd64 (2.3.2-1ubuntu1) over (2.3.1a-3ubuntu1) ... Preparing to unpack .../04-libsqlite3-0_3.24.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.24.0-1) over (3.22.0-1) ... Preparing to unpack .../05-tzdata_2018e-1_all.deb ... Unpacking tzdata (2018e-1) over (2018d-1) ... Preparing to unpack .../06-binutils-x86-64-linux-gnu_2.30-21ubuntu1_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.30-21ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../07-binutils-common_2.30-21ubuntu1_amd64.deb ... Unpacking binutils-common:amd64 (2.30-21ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../08-binutils_2.30-21ubuntu1_amd64.deb ... Unpacking binutils (2.30-21ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../09-libbinutils_2.30-21ubuntu1_amd64.deb ... Unpacking libbinutils:amd64 (2.30-21ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../10-libasan4_7.3.0-23ubuntu2_amd64.deb ... Unpacking libasan4:amd64 (7.3.0-23ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../11-libubsan0_7.3.0-23ubuntu2_amd64.deb ... Unpacking libubsan0:amd64 (7.3.0-23ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../12-libcilkrts5_7.3.0-23ubuntu2_amd64.deb ... Unpacking libcilkrts5:amd64 (7.3.0-23ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../13-g++-7_7.3.0-23ubuntu2_amd64.deb ... Unpacking g++-7 (7.3.0-23ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../14-gcc-7_7.3.0-23ubuntu2_amd64.deb ... Unpacking gcc-7 (7.3.0-23ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../15-libstdc++-7-dev_7.3.0-23ubuntu2_amd64.deb ... Unpacking libstdc++-7-dev:amd64 (7.3.0-23ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../16-libgcc-7-dev_7.3.0-23ubuntu2_amd64.deb ... Unpacking libgcc-7-dev:amd64 (7.3.0-23ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../17-cpp-7_7.3.0-23ubuntu2_amd64.deb ... Unpacking cpp-7 (7.3.0-23ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../18-gcc-7-base_7.3.0-23ubuntu2_amd64.deb ... Unpacking gcc-7-base:amd64 (7.3.0-23ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../19-cpp_4%3a7.3.0-3ubuntu3_amd64.deb ... Unpacking cpp (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../20-gcc_4%3a7.3.0-3ubuntu3_amd64.deb ... Unpacking gcc (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../21-g++_4%3a7.3.0-3ubuntu3_amd64.deb ... Unpacking g++ (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../22-dpkg-dev_1.19.0.5ubuntu3_all.deb ... Unpacking dpkg-dev (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Preparing to unpack .../23-libdpkg-perl_1.19.0.5ubuntu3_all.deb ... Unpacking libdpkg-perl (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Preparing to unpack .../24-build-essential_12.5ubuntu2_amd64.deb ... Unpacking build-essential (12.5ubuntu2) over (12.4ubuntu1) ... Preparing to unpack .../25-e2fslibs_1.44.2-1_amd64.deb ... Unpacking e2fslibs:amd64 (1.44.2-1) over (1.44.1-1) ... Preparing to unpack .../26-pinentry-curses_1.1.0-1build1_amd64.deb ... Unpacking pinentry-curses (1.1.0-1build1) over (1.1.0-1) ... Preparing to unpack .../27-libnpth0_1.5-4_amd64.deb ... Unpacking libnpth0:amd64 (1.5-4) over (1.5-3) ... Preparing to unpack .../28-gpg_2.2.8-1ubuntu1_amd64.deb ... Unpacking gpg (2.2.8-1ubuntu1) over (2.2.4-1ubuntu1) ... Preparing to unpack .../29-gpgconf_2.2.8-1ubuntu1_amd64.deb ... Unpacking gpgconf (2.2.8-1ubuntu1) over (2.2.4-1ubuntu1) ... Preparing to unpack .../30-gpg-agent_2.2.8-1ubuntu1_amd64.deb ... Unpacking gpg-agent (2.2.8-1ubuntu1) over (2.2.4-1ubuntu1) ... Preparing to unpack .../31-libcomerr2_1.44.2-1_amd64.deb ... Unpacking libcomerr2:amd64 (1.44.2-1) over (1.44.1-1) ... Preparing to unpack .../32-libusb-0.1-4_2%3a0.1.12-32_amd64.deb ... Unpacking libusb-0.1-4:amd64 (2:0.1.12-32) over (2:0.1.12-31) ... Preparing to unpack .../33-linux-libc-dev_4.15.0-24.26_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.15.0-24.26) over (4.15.0-20.21) ... Preparing to unpack .../34-pkgbinarymangler_139_all.deb ... Unpacking pkgbinarymangler (139) over (138) ... Setting up libquadmath0:amd64 (8.1.0-8ubuntu1) ... Setting up libnpth0:amd64 (1.5-4) ... Setting up libncurses5:amd64 (6.1+20180210-4ubuntu1) ... Setting up libgomp1:amd64 (8.1.0-8ubuntu1) ... Setting up libatomic1:amd64 (8.1.0-8ubuntu1) ... Setting up readline-common (7.0-5) ... Setting up libcc1-0:amd64 (8.1.0-8ubuntu1) ... Setting up pkgbinarymangler (139) ... Setting up e2fslibs:amd64 (1.44.2-1) ... Setting up libncursesw5:amd64 (6.1+20180210-4ubuntu1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up tzdata (2018e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Jun 19 10:56:59 UTC 2018. Universal Time is now: Tue Jun 19 10:56:59 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (238-5ubuntu1) ... Setting up libtsan0:amd64 (8.1.0-8ubuntu1) ... Setting up gpgconf (2.2.8-1ubuntu1) ... Setting up linux-libc-dev:amd64 (4.15.0-24.26) ... Setting up perl-modules-5.26 (5.26.2-6) ... Setting up liblsan0:amd64 (8.1.0-8ubuntu1) ... Setting up libargon2-0:amd64 (0~20161029-2) ... Setting up gcc-7-base:amd64 (7.3.0-23ubuntu2) ... Setting up binutils-common:amd64 (2.30-21ubuntu1) ... Setting up libmpx2:amd64 (8.1.0-8ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libperl5.26:amd64 (5.26.2-6) ... Setting up libsqlite3-0:amd64 (3.24.0-1) ... Setting up pinentry-curses (1.1.0-1build1) ... Setting up libcomerr2:amd64 (1.44.2-1) ... Setting up libslang2:amd64 (2.3.2-1ubuntu1) ... Setting up libusb-0.1-4:amd64 (2:0.1.12-32) ... Setting up libitm1:amd64 (8.1.0-8ubuntu1) ... Setting up gpg (2.2.8-1ubuntu1) ... Setting up libasan4:amd64 (7.3.0-23ubuntu2) ... Setting up libbinutils:amd64 (2.30-21ubuntu1) ... Setting up libcilkrts5:amd64 (7.3.0-23ubuntu2) ... Setting up libubsan0:amd64 (7.3.0-23ubuntu2) ... Setting up gpg-agent (2.2.8-1ubuntu1) ... Setting up libgcc-7-dev:amd64 (7.3.0-23ubuntu2) ... Setting up cpp-7 (7.3.0-23ubuntu2) ... Setting up libstdc++-7-dev:amd64 (7.3.0-23ubuntu2) ... Setting up perl (5.26.2-6) ... Setting up binutils-x86-64-linux-gnu (2.30-21ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu3) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up binutils (2.30-21ubuntu1) ... Setting up gcc-7 (7.3.0-23ubuntu2) ... Setting up g++-7 (7.3.0-23ubuntu2) ... Setting up gcc (4:7.3.0-3ubuntu3) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up g++ (4:7.3.0-3ubuntu3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15030946 amd64 cosmic-proposed -c chroot:build-PACKAGEBUILD-15030946 --arch=amd64 --dist=cosmic-proposed --nolog -A 'lammps_0~20180510.gitaa1d815fe-4ubuntu1.dsc' Initiating build PACKAGEBUILD-15030946 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-003.buildd +==============================================================================+ | lammps 0~20180510.gitaa1d815fe-4ubuntu1 (amd64) 19 Jun 2018 10:57 | +==============================================================================+ Package: lammps Version: 0~20180510.gitaa1d815fe-4ubuntu1 Source Version: 0~20180510.gitaa1d815fe-4ubuntu1 Distribution: cosmic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/lammps-J5LkWq/lammps-0~20180510.gitaa1d815fe' with '<>' I: NOTICE: Log filtering will replace 'build/lammps-J5LkWq' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15030946/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- lammps_0~20180510.gitaa1d815fe-4ubuntu1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-VHEM_O/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-VHEM_O/apt_archive ./ InRelease Get:2 copy:/<>/resolver-VHEM_O/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-VHEM_O/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-VHEM_O/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-VHEM_O/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-VHEM_O/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12677 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), libeigen3-dev, libfftw3-dev, libjpeg-dev, mpi-default-bin, mpi-default-dev, texlive-latex-recommended, htmldoc Filtered Build-Depends: debhelper (>= 11~), libeigen3-dev, libfftw3-dev, libjpeg-dev, mpi-default-bin, mpi-default-dev, texlive-latex-recommended, htmldoc dpkg-deb: building package 'sbuild-build-depends-lammps-dummy' in '/<>/resolver-4w8RY_/apt_archive/sbuild-build-depends-lammps-dummy.deb'. Ign:1 copy:/<>/resolver-4w8RY_/apt_archive ./ InRelease Get:2 copy:/<>/resolver-4w8RY_/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-4w8RY_/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-4w8RY_/apt_archive ./ Sources [277 B] Get:5 copy:/<>/resolver-4w8RY_/apt_archive ./ Packages [589 B] Fetched 2985 B in 0s (249 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install lammps build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base groff-base htmldoc htmldoc-common ibverbs-providers intltool-debian libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libbsd0 libcairo2 libcroco3 libcups2 libcupsimage2 libdbus-1-3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libeigen3-dev libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libfltk1.1 libfontconfig1 libfreetype6 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libice6 libicu60 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 libllvm6.0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpaper-utils libpaper1 libpciaccess0 libpipeline1 libpixman-1-0 libpmix2 libpotrace0 libpsm-infinipath1 libpsm2-2 libptexenc1 librdmacm1 libsensors4 libsigsegv2 libsm6 libssl1.0.0 libsynctex2 libtexlua52 libtexlua53 libtexluajit2 libtiff5 libtimedate-perl libtool libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxmu6 libxpm4 libxrender1 libxshmfence1 libxt6 libxxf86vm1 libzzip-0-13 m4 man-db mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config po-debconf poppler-data t1utils tex-common texlive-base texlive-binaries texlive-latex-base texlive-latex-recommended ucf x11-common xdg-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff cups-common libeigen3-doc libmrpt-dev libfftw3-doc krb5-doc krb5-user libhwloc-contrib-plugins liblcms2-utils libtool-doc openmpi-doc pciutils lm-sensors gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser opencl-icd gfortran keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum gv | postscript-viewer perl-tk xpdf-reader | pdf-viewer texlive-latex-base-doc texlive-latex-recommended-doc texlive-pstricks Recommended packages: curl | wget | lynx libcupsfilters1 dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback krb5-locales xauth libmail-sendmail-perl lmodern libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base groff-base htmldoc htmldoc-common ibverbs-providers intltool-debian libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libbsd0 libcairo2 libcroco3 libcups2 libcupsimage2 libdbus-1-3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libeigen3-dev libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libfltk1.1 libfontconfig1 libfreetype6 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libice6 libicu60 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 libllvm6.0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpaper-utils libpaper1 libpciaccess0 libpipeline1 libpixman-1-0 libpmix2 libpotrace0 libpsm-infinipath1 libpsm2-2 libptexenc1 librdmacm1 libsensors4 libsigsegv2 libsm6 libssl1.0.0 libsynctex2 libtexlua52 libtexlua53 libtexluajit2 libtiff5 libtimedate-perl libtool libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxmu6 libxpm4 libxrender1 libxshmfence1 libxt6 libxxf86vm1 libzzip-0-13 m4 man-db mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config po-debconf poppler-data sbuild-build-depends-lammps-dummy t1utils tex-common texlive-base texlive-binaries texlive-latex-base texlive-latex-recommended ucf x11-common xdg-utils 0 upgraded, 170 newly installed, 0 to remove and 0 not upgraded. Need to get 121 MB of archives. After this operation, 558 MB of additional disk space will be used. Get:1 copy:/<>/resolver-4w8RY_/apt_archive ./ sbuild-build-depends-lammps-dummy 0.invalid.0 [916 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] Get:3 http://ftpmaster.internal/ubuntu cosmic/main amd64 libbsd0 amd64 0.9.1-1 [44.6 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxdmcp6 amd64 1:1.1.2-3 [10.7 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxcb1 amd64 1.13-1 [45.6 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libx11-data all 2:1.6.5-1 [113 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libx11-6 amd64 2:1.6.5-1 [570 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main amd64 bsdmainutils amd64 11.1.2ubuntu2 [181 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main amd64 groff-base amd64 1.22.3-10 [1153 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpipeline1 amd64 1.5.0-1 [25.3 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main amd64 man-db amd64 2.8.3-2 [1019 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjpeg-turbo8 amd64 1.5.2-0ubuntu5 [110 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main amd64 x11-common all 1:7.7+19ubuntu7 [22.0 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main amd64 libice6 amd64 2:1.0.9-2 [40.2 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxinerama1 amd64 2:1.1.3-1 [7908 B] Get:18 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxxf86vm1 amd64 1:1.1.4-1 [10.6 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main amd64 poppler-data all 0.4.9-2 [1475 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main amd64 ucf all 3.0038 [50.5 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main amd64 tex-common all 6.09 [33.0 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmagic-mgc amd64 1:5.33-3 [192 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmagic1 amd64 1:5.33-3 [69.8 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main amd64 file amd64 1:5.33-3 [22.9 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main amd64 libdbus-1-3 amd64 1.12.2-1ubuntu1 [175 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main amd64 libelf1 amd64 0.170-0.4 [44.1 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main amd64 libexpat1 amd64 2.2.5-3 [80.2 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main amd64 libglib2.0-0 amd64 2.56.1-2ubuntu1 [1167 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main amd64 libicu60 amd64 60.2-6ubuntu1 [8055 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libxml2 amd64 2.9.4+dfsg1-7 [664 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main amd64 gettext-base amd64 0.19.8.1-6build1 [50.0 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main amd64 libdrm-common all 2.4.92-1 [4848 B] Get:33 http://ftpmaster.internal/ubuntu cosmic/main amd64 libdrm2 amd64 2.4.92-1 [30.9 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libedit2 amd64 3.1-20180525-1 [78.5 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main amd64 libkrb5support0 amd64 1.16-2build1 [31.1 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main amd64 libk5crypto3 amd64 1.16-2build1 [85.6 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main amd64 libkeyutils1 amd64 1.5.9-9.2ubuntu3 [8704 B] Get:38 http://ftpmaster.internal/ubuntu cosmic/main amd64 libkrb5-3 amd64 1.16-2build1 [279 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgssapi-krb5-2 amd64 1.16-2build1 [122 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main amd64 libnuma1 amd64 2.0.11-2.2 [22.2 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main amd64 libssl1.0.0 amd64 1.0.2n-1ubuntu5 [1087 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main amd64 openssh-client amd64 1:7.7p1-2 [625 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsigsegv2 amd64 2.12-2 [13.9 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main amd64 m4 amd64 1.4.18-1 [197 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main amd64 autoconf all 2.69-11 [322 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main amd64 autotools-dev all 20180224.1 [39.6 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main amd64 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main amd64 autopoint all 0.19.8.1-6build1 [412 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtool all 2.4.6-2.1 [195 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main amd64 dh-autoreconf all 19 [16.1 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main amd64 libarchive-zip-perl all 1.60-1 [83.9 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main amd64 libfile-stripnondeterminism-perl all 0.042-1 [15.2 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main amd64 dh-strip-nondeterminism all 0.042-1 [5188 B] Get:55 http://ftpmaster.internal/ubuntu cosmic/main amd64 dwz amd64 0.12-2 [77.7 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcroco3 amd64 0.6.12-2 [81.3 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main amd64 gettext amd64 0.19.8.1-6build1 [895 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main amd64 po-debconf all 1.0.20 [232 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main amd64 debhelper all 11.3.2ubuntu1 [883 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main amd64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main amd64 fontconfig-config all 2.12.6-0ubuntu2 [55.8 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main amd64 fonts-lmodern all 2.004.5-3 [4551 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/universe amd64 htmldoc-common all 1.9.3-1 [2120 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main amd64 libfreetype6 amd64 2.8.1-2ubuntu2 [335 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main amd64 libfontconfig1 amd64 2.12.6-0ubuntu2 [137 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main amd64 libglvnd0 amd64 1.0.0+git20180308-3ubuntu1 [47.5 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main amd64 libglapi-mesa amd64 18.1.1-1ubuntu1 [23.2 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libx11-xcb1 amd64 2:1.6.5-1 [9436 B] Get:70 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxcb-dri2-0 amd64 1.13-1 [6928 B] Get:71 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxcb-dri3-0 amd64 1.13-1 [6536 B] Get:72 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxcb-glx0 amd64 1.13-1 [22.0 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxcb-present0 amd64 1.13-1 [5540 B] Get:74 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxcb-sync1 amd64 1.13-1 [8808 B] Get:75 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxdamage1 amd64 1:1.1.4-3 [6934 B] Get:76 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxfixes3 amd64 1:5.0.3-1 [10.8 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxshmfence1 amd64 1.3-1 [5028 B] Get:78 http://ftpmaster.internal/ubuntu cosmic/main amd64 libdrm-amdgpu1 amd64 2.4.92-1 [19.0 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpciaccess0 amd64 0.14-1 [17.9 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main amd64 libdrm-intel1 amd64 2.4.92-1 [59.8 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main amd64 libdrm-nouveau2 amd64 2.4.92-1 [16.5 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic/main amd64 libdrm-radeon1 amd64 2.4.92-1 [21.7 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main amd64 libllvm6.0 amd64 1:6.0-3ubuntu1 [14.5 MB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsensors4 amd64 1:3.4.0-4 [28.8 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgl1-mesa-dri amd64 18.1.1-1ubuntu1 [6261 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main amd64 libglx-mesa0 amd64 18.1.1-1ubuntu1 [133 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main amd64 libglx0 amd64 1.0.0+git20180308-3ubuntu1 [28.3 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgl1 amd64 1.0.0+git20180308-3ubuntu1 [85.0 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:90 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxrender1 amd64 1:0.9.10-1 [18.7 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxft2 amd64 2.3.2-2 [38.5 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libfltk1.1 amd64 1.1.10-25 [322 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxpm4 amd64 1:3.5.12-1 [34.0 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/universe amd64 htmldoc amd64 1.9.3-1 [169 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic/main amd64 libnl-3-200 amd64 3.2.29-0ubuntu3 [52.8 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic/main amd64 libnl-route-3-200 amd64 3.2.29-0ubuntu3 [146 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libibverbs1 amd64 18.1-1 [48.3 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 ibverbs-providers amd64 18.1-1 [171 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main amd64 libavahi-common-data amd64 0.7-4ubuntu1 [22.2 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic/main amd64 libavahi-common3 amd64 0.7-4ubuntu1 [21.6 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic/main amd64 libavahi-client3 amd64 0.7-4ubuntu1 [25.2 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpixman-1-0 amd64 0.34.0-2 [229 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxcb-render0 amd64 1.13-1 [14.7 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxcb-shm0 amd64 1.13-1 [5572 B] Get:105 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcairo2 amd64 1.15.10-3 [580 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcups2 amd64 2.2.7-1ubuntu2 [211 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcupsimage2 amd64 2.2.7-1ubuntu2 [18.5 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic/main amd64 libevent-2.1-6 amd64 2.1.8-stable-4build1 [133 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic/main amd64 libevent-core-2.1-6 amd64 2.1.8-stable-4build1 [85.9 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic/main amd64 libevent-pthreads-2.1-6 amd64 2.1.8-stable-4build1 [5228 B] Get:111 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-5 [174 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libpsm2-2 amd64 10.3.58-1 [172 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 librdmacm1 amd64 18.1-1 [64.5 kB] Get:114 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libfabric1 amd64 1.6.1-3 [419 kB] Get:115 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libfftw3-double3 amd64 3.3.7-1build1 [735 kB] Get:116 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libfftw3-long3 amd64 3.3.7-1build1 [308 kB] Get:117 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libfftw3-quad3 amd64 3.3.7-1build1 [552 kB] Get:118 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libfftw3-single3 amd64 3.3.7-1build1 [764 kB] Get:119 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libfftw3-bin amd64 3.3.7-1build1 [32.7 kB] Get:120 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libfftw3-dev amd64 3.3.7-1build1 [2109 kB] Get:121 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgraphite2-3 amd64 1.3.11-2 [78.7 kB] Get:122 http://ftpmaster.internal/ubuntu cosmic/main amd64 libijs-0.35 amd64 0.35-13 [15.5 kB] Get:123 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjbig2dec0 amd64 0.14-1 [55.3 kB] Get:124 http://ftpmaster.internal/ubuntu cosmic/main amd64 liblcms2-2 amd64 2.9-2 [139 kB] Get:125 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpaper1 amd64 1.1.24+nmu5ubuntu1 [13.6 kB] Get:126 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjbig0 amd64 2.1-3.1build1 [26.7 kB] Get:127 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtiff5 amd64 4.0.9-5 [152 kB] Get:128 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgs9-common all 9.22~dfsg+1-0ubuntu1.1 [5198 kB] Get:129 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgs9 amd64 9.22~dfsg+1-0ubuntu1.1 [2213 kB] Get:130 http://ftpmaster.internal/ubuntu cosmic/main amd64 libharfbuzz0b amd64 1.7.6-1ubuntu1 [264 kB] Get:131 http://ftpmaster.internal/ubuntu cosmic/main amd64 libharfbuzz-icu0 amd64 1.7.6-1ubuntu1 [5600 B] Get:132 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjpeg-turbo8-dev amd64 1.5.2-0ubuntu5 [225 kB] Get:133 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:134 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:135 http://ftpmaster.internal/ubuntu cosmic/main amd64 libkpathsea6 amd64 2018.20180416.47457-4 [56.3 kB] Get:136 http://ftpmaster.internal/ubuntu cosmic/main amd64 libltdl7 amd64 2.4.6-2.1 [38.8 kB] Get:137 http://ftpmaster.internal/ubuntu cosmic/main amd64 libltdl-dev amd64 2.4.6-2.1 [161 kB] Get:138 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libhwloc5 amd64 1.11.10-2 [106 kB] Get:139 http://ftpmaster.internal/ubuntu cosmic/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1ubuntu1 [30.3 kB] Get:140 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libhwloc-plugins amd64 1.11.10-2 [12.6 kB] Get:141 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libpmix2 amd64 2.1.1-2 [338 kB] Get:142 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 libopenmpi3 amd64 3.1.0-7 [2148 kB] Get:143 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpaper-utils amd64 1.1.24+nmu5ubuntu1 [8170 B] Get:144 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpotrace0 amd64 1.15-1 [17.5 kB] Get:145 http://ftpmaster.internal/ubuntu cosmic/main amd64 libptexenc1 amd64 2018.20180416.47457-4 [36.1 kB] Get:146 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsynctex2 amd64 2018.20180416.47457-4 [54.4 kB] Get:147 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtexlua52 amd64 2018.20180416.47457-4 [91.3 kB] Get:148 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtexlua53 amd64 2018.20180416.47457-4 [104 kB] Get:149 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtexluajit2 amd64 2018.20180416.47457-4 [234 kB] Get:150 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxt6 amd64 1:1.1.5-1 [160 kB] Get:151 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxmu6 amd64 2:1.1.2-2 [46.0 kB] Get:152 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxaw7 amd64 2:1.0.13-1 [173 kB] Get:153 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxi6 amd64 2:1.7.9-1 [29.2 kB] Get:154 http://ftpmaster.internal/ubuntu cosmic/main amd64 libzzip-0-13 amd64 0.13.62-3.1 [25.8 kB] Get:155 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 openmpi-common all 3.1.0-7 [144 kB] Get:156 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 openmpi-bin amd64 3.1.0-7 [94.6 kB] Get:157 http://ftpmaster.internal/ubuntu cosmic/main amd64 pkg-config amd64 0.29.1-0ubuntu2 [45.0 kB] Get:158 http://ftpmaster.internal/ubuntu cosmic/main amd64 t1utils amd64 1.41-2 [56.0 kB] Get:159 http://ftpmaster.internal/ubuntu cosmic/main amd64 texlive-binaries amd64 2018.20180416.47457-4 [11.8 MB] Get:160 http://ftpmaster.internal/ubuntu cosmic/main amd64 xdg-utils all 1.1.2-1ubuntu3 [60.8 kB] Get:161 http://ftpmaster.internal/ubuntu cosmic/main amd64 texlive-base all 2018.20180505-1 [18.9 MB] Get:162 http://ftpmaster.internal/ubuntu cosmic/main amd64 texlive-latex-base all 2018.20180505-1 [953 kB] Get:163 http://ftpmaster.internal/ubuntu cosmic/main amd64 texlive-latex-recommended all 2018.20180505-1 [15.3 MB] Get:164 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libeigen3-dev all 3.3.4-4 [810 kB] Get:165 http://ftpmaster.internal/ubuntu cosmic/main amd64 libnuma-dev amd64 2.0.11-2.2 [32.3 kB] Get:166 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libhwloc-dev amd64 1.11.10-2 [168 kB] Get:167 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libibverbs-dev amd64 18.1-1 [114 kB] Get:168 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 libopenmpi-dev amd64 3.1.0-7 [836 kB] Get:169 http://ftpmaster.internal/ubuntu cosmic/universe amd64 mpi-default-bin amd64 1.13 [2968 B] Get:170 http://ftpmaster.internal/ubuntu cosmic/universe amd64 mpi-default-dev amd64 1.13 [3748 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 121 MB in 2s (50.9 MB/s) Selecting previously unselected package libxau6:amd64. (Reading database ... 12677 files and directories currently installed.) Preparing to unpack .../000-libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../001-libbsd0_0.9.1-1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../002-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../003-libxcb1_1.13-1_amd64.deb ... Unpacking libxcb1:amd64 (1.13-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../004-libx11-data_2%3a1.6.5-1_all.deb ... Unpacking libx11-data (2:1.6.5-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../005-libx11-6_2%3a1.6.5-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.5-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../006-libxext6_2%3a1.3.3-1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../007-bsdmainutils_11.1.2ubuntu2_amd64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../008-groff-base_1.22.3-10_amd64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../009-libpipeline1_1.5.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.8.3-2_amd64.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libjpeg-turbo8:amd64. Preparing to unpack .../011-libjpeg-turbo8_1.5.2-0ubuntu5_amd64.deb ... Unpacking libjpeg-turbo8:amd64 (1.5.2-0ubuntu5) ... Selecting previously unselected package x11-common. Preparing to unpack .../012-x11-common_1%3a7.7+19ubuntu7_all.deb ... Unpacking x11-common (1:7.7+19ubuntu7) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../013-libice6_2%3a1.0.9-2_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-2) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../014-libsm6_2%3a1.2.2-1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.2-1) ... Selecting previously unselected package libxinerama1:amd64. Preparing to unpack .../015-libxinerama1_2%3a1.1.3-1_amd64.deb ... Unpacking libxinerama1:amd64 (2:1.1.3-1) ... Selecting previously unselected package libxxf86vm1:amd64. Preparing to unpack .../016-libxxf86vm1_1%3a1.1.4-1_amd64.deb ... Unpacking libxxf86vm1:amd64 (1:1.1.4-1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../017-poppler-data_0.4.9-2_all.deb ... Unpacking poppler-data (0.4.9-2) ... Selecting previously unselected package ucf. Preparing to unpack .../018-ucf_3.0038_all.deb ... Moving old data out of the way Unpacking ucf (3.0038) ... Selecting previously unselected package tex-common. Preparing to unpack .../019-tex-common_6.09_all.deb ... Unpacking tex-common (6.09) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../020-libmagic-mgc_1%3a5.33-3_amd64.deb ... Unpacking libmagic-mgc (1:5.33-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../021-libmagic1_1%3a5.33-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.33-3) ... Selecting previously unselected package file. Preparing to unpack .../022-file_1%3a5.33-3_amd64.deb ... Unpacking file (1:5.33-3) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../023-libdbus-1-3_1.12.2-1ubuntu1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.2-1ubuntu1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../024-libelf1_0.170-0.4_amd64.deb ... Unpacking libelf1:amd64 (0.170-0.4) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../025-libexpat1_2.2.5-3_amd64.deb ... Unpacking libexpat1:amd64 (2.2.5-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../026-libglib2.0-0_2.56.1-2ubuntu1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.56.1-2ubuntu1) ... Selecting previously unselected package libicu60:amd64. Preparing to unpack .../027-libicu60_60.2-6ubuntu1_amd64.deb ... Unpacking libicu60:amd64 (60.2-6ubuntu1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../028-libxml2_2.9.4+dfsg1-7_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7) ... Selecting previously unselected package gettext-base. Preparing to unpack .../029-gettext-base_0.19.8.1-6build1_amd64.deb ... Unpacking gettext-base (0.19.8.1-6build1) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../030-libdrm-common_2.4.92-1_all.deb ... Unpacking libdrm-common (2.4.92-1) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../031-libdrm2_2.4.92-1_amd64.deb ... Unpacking libdrm2:amd64 (2.4.92-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../032-libedit2_3.1-20180525-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20180525-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../033-libkrb5support0_1.16-2build1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.16-2build1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../034-libk5crypto3_1.16-2build1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.16-2build1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../035-libkeyutils1_1.5.9-9.2ubuntu3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-9.2ubuntu3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../036-libkrb5-3_1.16-2build1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.16-2build1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../037-libgssapi-krb5-2_1.16-2build1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.16-2build1) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../038-libnuma1_2.0.11-2.2_amd64.deb ... Unpacking libnuma1:amd64 (2.0.11-2.2) ... Selecting previously unselected package libssl1.0.0:amd64. Preparing to unpack .../039-libssl1.0.0_1.0.2n-1ubuntu5_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.2n-1ubuntu5) ... Selecting previously unselected package openssh-client. Preparing to unpack .../040-openssh-client_1%3a7.7p1-2_amd64.deb ... Unpacking openssh-client (1:7.7p1-2) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../041-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../042-m4_1.4.18-1_amd64.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../043-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../044-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../045-automake_1%3a1.15.1-3ubuntu2_all.deb ... Unpacking automake (1:1.15.1-3ubuntu2) ... Selecting previously unselected package autopoint. Preparing to unpack .../046-autopoint_0.19.8.1-6build1_all.deb ... Unpacking autopoint (0.19.8.1-6build1) ... Selecting previously unselected package libtool. Preparing to unpack .../047-libtool_2.4.6-2.1_all.deb ... Unpacking libtool (2.4.6-2.1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../048-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../049-libarchive-zip-perl_1.60-1_all.deb ... Unpacking libarchive-zip-perl (1.60-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../050-libfile-stripnondeterminism-perl_0.042-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.042-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../051-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../052-dh-strip-nondeterminism_0.042-1_all.deb ... Unpacking dh-strip-nondeterminism (0.042-1) ... Selecting previously unselected package dwz. Preparing to unpack .../053-dwz_0.12-2_amd64.deb ... Unpacking dwz (0.12-2) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../054-libcroco3_0.6.12-2_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-2) ... Selecting previously unselected package gettext. Preparing to unpack .../055-gettext_0.19.8.1-6build1_amd64.deb ... Unpacking gettext (0.19.8.1-6build1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../056-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../057-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../058-debhelper_11.3.2ubuntu1_all.deb ... Unpacking debhelper (11.3.2ubuntu1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../059-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../060-fontconfig-config_2.12.6-0ubuntu2_all.deb ... Unpacking fontconfig-config (2.12.6-0ubuntu2) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../061-fonts-lmodern_2.004.5-3_all.deb ... Unpacking fonts-lmodern (2.004.5-3) ... Selecting previously unselected package htmldoc-common. Preparing to unpack .../062-htmldoc-common_1.9.3-1_all.deb ... Unpacking htmldoc-common (1.9.3-1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../063-libfreetype6_2.8.1-2ubuntu2_amd64.deb ... Unpacking libfreetype6:amd64 (2.8.1-2ubuntu2) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../064-libfontconfig1_2.12.6-0ubuntu2_amd64.deb ... Unpacking libfontconfig1:amd64 (2.12.6-0ubuntu2) ... Selecting previously unselected package libglvnd0:amd64. Preparing to unpack .../065-libglvnd0_1.0.0+git20180308-3ubuntu1_amd64.deb ... Unpacking libglvnd0:amd64 (1.0.0+git20180308-3ubuntu1) ... Selecting previously unselected package libglapi-mesa:amd64. Preparing to unpack .../066-libglapi-mesa_18.1.1-1ubuntu1_amd64.deb ... Unpacking libglapi-mesa:amd64 (18.1.1-1ubuntu1) ... Selecting previously unselected package libx11-xcb1:amd64. Preparing to unpack .../067-libx11-xcb1_2%3a1.6.5-1_amd64.deb ... Unpacking libx11-xcb1:amd64 (2:1.6.5-1) ... Selecting previously unselected package libxcb-dri2-0:amd64. Preparing to unpack .../068-libxcb-dri2-0_1.13-1_amd64.deb ... Unpacking libxcb-dri2-0:amd64 (1.13-1) ... Selecting previously unselected package libxcb-dri3-0:amd64. Preparing to unpack .../069-libxcb-dri3-0_1.13-1_amd64.deb ... Unpacking libxcb-dri3-0:amd64 (1.13-1) ... Selecting previously unselected package libxcb-glx0:amd64. Preparing to unpack .../070-libxcb-glx0_1.13-1_amd64.deb ... Unpacking libxcb-glx0:amd64 (1.13-1) ... Selecting previously unselected package libxcb-present0:amd64. Preparing to unpack .../071-libxcb-present0_1.13-1_amd64.deb ... Unpacking libxcb-present0:amd64 (1.13-1) ... Selecting previously unselected package libxcb-sync1:amd64. Preparing to unpack .../072-libxcb-sync1_1.13-1_amd64.deb ... Unpacking libxcb-sync1:amd64 (1.13-1) ... Selecting previously unselected package libxdamage1:amd64. Preparing to unpack .../073-libxdamage1_1%3a1.1.4-3_amd64.deb ... Unpacking libxdamage1:amd64 (1:1.1.4-3) ... Selecting previously unselected package libxfixes3:amd64. Preparing to unpack .../074-libxfixes3_1%3a5.0.3-1_amd64.deb ... Unpacking libxfixes3:amd64 (1:5.0.3-1) ... Selecting previously unselected package libxshmfence1:amd64. Preparing to unpack .../075-libxshmfence1_1.3-1_amd64.deb ... Unpacking libxshmfence1:amd64 (1.3-1) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../076-libdrm-amdgpu1_2.4.92-1_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.92-1) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../077-libpciaccess0_0.14-1_amd64.deb ... Unpacking libpciaccess0:amd64 (0.14-1) ... Selecting previously unselected package libdrm-intel1:amd64. Preparing to unpack .../078-libdrm-intel1_2.4.92-1_amd64.deb ... Unpacking libdrm-intel1:amd64 (2.4.92-1) ... Selecting previously unselected package libdrm-nouveau2:amd64. Preparing to unpack .../079-libdrm-nouveau2_2.4.92-1_amd64.deb ... Unpacking libdrm-nouveau2:amd64 (2.4.92-1) ... Selecting previously unselected package libdrm-radeon1:amd64. Preparing to unpack .../080-libdrm-radeon1_2.4.92-1_amd64.deb ... Unpacking libdrm-radeon1:amd64 (2.4.92-1) ... Selecting previously unselected package libllvm6.0:amd64. Preparing to unpack .../081-libllvm6.0_1%3a6.0-3ubuntu1_amd64.deb ... Unpacking libllvm6.0:amd64 (1:6.0-3ubuntu1) ... Selecting previously unselected package libsensors4:amd64. Preparing to unpack .../082-libsensors4_1%3a3.4.0-4_amd64.deb ... Unpacking libsensors4:amd64 (1:3.4.0-4) ... Selecting previously unselected package libgl1-mesa-dri:amd64. Preparing to unpack .../083-libgl1-mesa-dri_18.1.1-1ubuntu1_amd64.deb ... Unpacking libgl1-mesa-dri:amd64 (18.1.1-1ubuntu1) ... Selecting previously unselected package libglx-mesa0:amd64. Preparing to unpack .../084-libglx-mesa0_18.1.1-1ubuntu1_amd64.deb ... Unpacking libglx-mesa0:amd64 (18.1.1-1ubuntu1) ... Selecting previously unselected package libglx0:amd64. Preparing to unpack .../085-libglx0_1.0.0+git20180308-3ubuntu1_amd64.deb ... Unpacking libglx0:amd64 (1.0.0+git20180308-3ubuntu1) ... Selecting previously unselected package libgl1:amd64. Preparing to unpack .../086-libgl1_1.0.0+git20180308-3ubuntu1_amd64.deb ... Unpacking libgl1:amd64 (1.0.0+git20180308-3ubuntu1) ... Selecting previously unselected package libjpeg8:amd64. Preparing to unpack .../087-libjpeg8_8c-2ubuntu8_amd64.deb ... Unpacking libjpeg8:amd64 (8c-2ubuntu8) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../088-libxrender1_1%3a0.9.10-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../089-libxft2_2.3.2-2_amd64.deb ... Unpacking libxft2:amd64 (2.3.2-2) ... Selecting previously unselected package libfltk1.1:amd64. Preparing to unpack .../090-libfltk1.1_1.1.10-25_amd64.deb ... Unpacking libfltk1.1:amd64 (1.1.10-25) ... Selecting previously unselected package libxpm4:amd64. Preparing to unpack .../091-libxpm4_1%3a3.5.12-1_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.12-1) ... Selecting previously unselected package htmldoc. Preparing to unpack .../092-htmldoc_1.9.3-1_amd64.deb ... Unpacking htmldoc (1.9.3-1) ... Selecting previously unselected package libnl-3-200:amd64. Preparing to unpack .../093-libnl-3-200_3.2.29-0ubuntu3_amd64.deb ... Unpacking libnl-3-200:amd64 (3.2.29-0ubuntu3) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../094-libnl-route-3-200_3.2.29-0ubuntu3_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.2.29-0ubuntu3) ... Selecting previously unselected package libibverbs1:amd64. Preparing to unpack .../095-libibverbs1_18.1-1_amd64.deb ... Unpacking libibverbs1:amd64 (18.1-1) ... Selecting previously unselected package ibverbs-providers:amd64. Preparing to unpack .../096-ibverbs-providers_18.1-1_amd64.deb ... Unpacking ibverbs-providers:amd64 (18.1-1) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../097-libavahi-common-data_0.7-4ubuntu1_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.7-4ubuntu1) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../098-libavahi-common3_0.7-4ubuntu1_amd64.deb ... Unpacking libavahi-common3:amd64 (0.7-4ubuntu1) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../099-libavahi-client3_0.7-4ubuntu1_amd64.deb ... Unpacking libavahi-client3:amd64 (0.7-4ubuntu1) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../100-libpixman-1-0_0.34.0-2_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.34.0-2) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../101-libxcb-render0_1.13-1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.13-1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../102-libxcb-shm0_1.13-1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.13-1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../103-libcairo2_1.15.10-3_amd64.deb ... Unpacking libcairo2:amd64 (1.15.10-3) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../104-libcups2_2.2.7-1ubuntu2_amd64.deb ... Unpacking libcups2:amd64 (2.2.7-1ubuntu2) ... Selecting previously unselected package libcupsimage2:amd64. Preparing to unpack .../105-libcupsimage2_2.2.7-1ubuntu2_amd64.deb ... Unpacking libcupsimage2:amd64 (2.2.7-1ubuntu2) ... Selecting previously unselected package libevent-2.1-6:amd64. Preparing to unpack .../106-libevent-2.1-6_2.1.8-stable-4build1_amd64.deb ... Unpacking libevent-2.1-6:amd64 (2.1.8-stable-4build1) ... Selecting previously unselected package libevent-core-2.1-6:amd64. Preparing to unpack .../107-libevent-core-2.1-6_2.1.8-stable-4build1_amd64.deb ... Unpacking libevent-core-2.1-6:amd64 (2.1.8-stable-4build1) ... Selecting previously unselected package libevent-pthreads-2.1-6:amd64. Preparing to unpack .../108-libevent-pthreads-2.1-6_2.1.8-stable-4build1_amd64.deb ... Unpacking libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4build1) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../109-libpsm-infinipath1_3.3+20.604758e7-5_amd64.deb ... Unpacking libpsm-infinipath1 (3.3+20.604758e7-5) ... Selecting previously unselected package libpsm2-2. Preparing to unpack .../110-libpsm2-2_10.3.58-1_amd64.deb ... Unpacking libpsm2-2 (10.3.58-1) ... Selecting previously unselected package librdmacm1:amd64. Preparing to unpack .../111-librdmacm1_18.1-1_amd64.deb ... Unpacking librdmacm1:amd64 (18.1-1) ... Selecting previously unselected package libfabric1. Preparing to unpack .../112-libfabric1_1.6.1-3_amd64.deb ... Unpacking libfabric1 (1.6.1-3) ... Selecting previously unselected package libfftw3-double3:amd64. Preparing to unpack .../113-libfftw3-double3_3.3.7-1build1_amd64.deb ... Unpacking libfftw3-double3:amd64 (3.3.7-1build1) ... Selecting previously unselected package libfftw3-long3:amd64. Preparing to unpack .../114-libfftw3-long3_3.3.7-1build1_amd64.deb ... Unpacking libfftw3-long3:amd64 (3.3.7-1build1) ... Selecting previously unselected package libfftw3-quad3:amd64. Preparing to unpack .../115-libfftw3-quad3_3.3.7-1build1_amd64.deb ... Unpacking libfftw3-quad3:amd64 (3.3.7-1build1) ... Selecting previously unselected package libfftw3-single3:amd64. Preparing to unpack .../116-libfftw3-single3_3.3.7-1build1_amd64.deb ... Unpacking libfftw3-single3:amd64 (3.3.7-1build1) ... Selecting previously unselected package libfftw3-bin. Preparing to unpack .../117-libfftw3-bin_3.3.7-1build1_amd64.deb ... Unpacking libfftw3-bin (3.3.7-1build1) ... Selecting previously unselected package libfftw3-dev:amd64. Preparing to unpack .../118-libfftw3-dev_3.3.7-1build1_amd64.deb ... Unpacking libfftw3-dev:amd64 (3.3.7-1build1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../119-libgraphite2-3_1.3.11-2_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.11-2) ... Selecting previously unselected package libijs-0.35:amd64. Preparing to unpack .../120-libijs-0.35_0.35-13_amd64.deb ... Unpacking libijs-0.35:amd64 (0.35-13) ... Selecting previously unselected package libjbig2dec0:amd64. Preparing to unpack .../121-libjbig2dec0_0.14-1_amd64.deb ... Unpacking libjbig2dec0:amd64 (0.14-1) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../122-liblcms2-2_2.9-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.9-2) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../123-libpaper1_1.1.24+nmu5ubuntu1_amd64.deb ... Unpacking libpaper1:amd64 (1.1.24+nmu5ubuntu1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../124-libjbig0_2.1-3.1build1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1build1) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../125-libtiff5_4.0.9-5_amd64.deb ... Unpacking libtiff5:amd64 (4.0.9-5) ... Selecting previously unselected package libgs9-common. Preparing to unpack .../126-libgs9-common_9.22~dfsg+1-0ubuntu1.1_all.deb ... Unpacking libgs9-common (9.22~dfsg+1-0ubuntu1.1) ... Selecting previously unselected package libgs9:amd64. Preparing to unpack .../127-libgs9_9.22~dfsg+1-0ubuntu1.1_amd64.deb ... Unpacking libgs9:amd64 (9.22~dfsg+1-0ubuntu1.1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../128-libharfbuzz0b_1.7.6-1ubuntu1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (1.7.6-1ubuntu1) ... Selecting previously unselected package libharfbuzz-icu0:amd64. Preparing to unpack .../129-libharfbuzz-icu0_1.7.6-1ubuntu1_amd64.deb ... Unpacking libharfbuzz-icu0:amd64 (1.7.6-1ubuntu1) ... Selecting previously unselected package libjpeg-turbo8-dev:amd64. Preparing to unpack .../130-libjpeg-turbo8-dev_1.5.2-0ubuntu5_amd64.deb ... Unpacking libjpeg-turbo8-dev:amd64 (1.5.2-0ubuntu5) ... Selecting previously unselected package libjpeg8-dev:amd64. Preparing to unpack .../131-libjpeg8-dev_8c-2ubuntu8_amd64.deb ... Unpacking libjpeg8-dev:amd64 (8c-2ubuntu8) ... Selecting previously unselected package libjpeg-dev:amd64. Preparing to unpack .../132-libjpeg-dev_8c-2ubuntu8_amd64.deb ... Unpacking libjpeg-dev:amd64 (8c-2ubuntu8) ... Selecting previously unselected package libkpathsea6:amd64. Preparing to unpack .../133-libkpathsea6_2018.20180416.47457-4_amd64.deb ... Unpacking libkpathsea6:amd64 (2018.20180416.47457-4) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../134-libltdl7_2.4.6-2.1_amd64.deb ... Unpacking libltdl7:amd64 (2.4.6-2.1) ... Selecting previously unselected package libltdl-dev:amd64. Preparing to unpack .../135-libltdl-dev_2.4.6-2.1_amd64.deb ... Unpacking libltdl-dev:amd64 (2.4.6-2.1) ... Selecting previously unselected package libhwloc5:amd64. Preparing to unpack .../136-libhwloc5_1.11.10-2_amd64.deb ... Unpacking libhwloc5:amd64 (1.11.10-2) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../137-ocl-icd-libopencl1_2.2.11-1ubuntu1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... Selecting previously unselected package libhwloc-plugins:amd64. Preparing to unpack .../138-libhwloc-plugins_1.11.10-2_amd64.deb ... Unpacking libhwloc-plugins:amd64 (1.11.10-2) ... Selecting previously unselected package libpmix2:amd64. Preparing to unpack .../139-libpmix2_2.1.1-2_amd64.deb ... Unpacking libpmix2:amd64 (2.1.1-2) ... Selecting previously unselected package libopenmpi3:amd64. Preparing to unpack .../140-libopenmpi3_3.1.0-7_amd64.deb ... Unpacking libopenmpi3:amd64 (3.1.0-7) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../141-libpaper-utils_1.1.24+nmu5ubuntu1_amd64.deb ... Unpacking libpaper-utils (1.1.24+nmu5ubuntu1) ... Selecting previously unselected package libpotrace0:amd64. Preparing to unpack .../142-libpotrace0_1.15-1_amd64.deb ... Unpacking libpotrace0:amd64 (1.15-1) ... Selecting previously unselected package libptexenc1:amd64. Preparing to unpack .../143-libptexenc1_2018.20180416.47457-4_amd64.deb ... Unpacking libptexenc1:amd64 (2018.20180416.47457-4) ... Selecting previously unselected package libsynctex2:amd64. Preparing to unpack .../144-libsynctex2_2018.20180416.47457-4_amd64.deb ... Unpacking libsynctex2:amd64 (2018.20180416.47457-4) ... Selecting previously unselected package libtexlua52:amd64. Preparing to unpack .../145-libtexlua52_2018.20180416.47457-4_amd64.deb ... Unpacking libtexlua52:amd64 (2018.20180416.47457-4) ... Selecting previously unselected package libtexlua53:amd64. Preparing to unpack .../146-libtexlua53_2018.20180416.47457-4_amd64.deb ... Unpacking libtexlua53:amd64 (2018.20180416.47457-4) ... Selecting previously unselected package libtexluajit2:amd64. Preparing to unpack .../147-libtexluajit2_2018.20180416.47457-4_amd64.deb ... Unpacking libtexluajit2:amd64 (2018.20180416.47457-4) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../148-libxt6_1%3a1.1.5-1_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.5-1) ... Selecting previously unselected package libxmu6:amd64. Preparing to unpack .../149-libxmu6_2%3a1.1.2-2_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.2-2) ... Selecting previously unselected package libxaw7:amd64. Preparing to unpack .../150-libxaw7_2%3a1.0.13-1_amd64.deb ... Unpacking libxaw7:amd64 (2:1.0.13-1) ... Selecting previously unselected package libxi6:amd64. Preparing to unpack .../151-libxi6_2%3a1.7.9-1_amd64.deb ... Unpacking libxi6:amd64 (2:1.7.9-1) ... Selecting previously unselected package libzzip-0-13:amd64. Preparing to unpack .../152-libzzip-0-13_0.13.62-3.1_amd64.deb ... Unpacking libzzip-0-13:amd64 (0.13.62-3.1) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../153-openmpi-common_3.1.0-7_all.deb ... Unpacking openmpi-common (3.1.0-7) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../154-openmpi-bin_3.1.0-7_amd64.deb ... Unpacking openmpi-bin (3.1.0-7) ... Selecting previously unselected package pkg-config. Preparing to unpack .../155-pkg-config_0.29.1-0ubuntu2_amd64.deb ... Unpacking pkg-config (0.29.1-0ubuntu2) ... Selecting previously unselected package t1utils. Preparing to unpack .../156-t1utils_1.41-2_amd64.deb ... Unpacking t1utils (1.41-2) ... Selecting previously unselected package texlive-binaries. Preparing to unpack .../157-texlive-binaries_2018.20180416.47457-4_amd64.deb ... Unpacking texlive-binaries (2018.20180416.47457-4) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../158-xdg-utils_1.1.2-1ubuntu3_all.deb ... Unpacking xdg-utils (1.1.2-1ubuntu3) ... Selecting previously unselected package texlive-base. Preparing to unpack .../159-texlive-base_2018.20180505-1_all.deb ... Unpacking texlive-base (2018.20180505-1) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../160-texlive-latex-base_2018.20180505-1_all.deb ... Unpacking texlive-latex-base (2018.20180505-1) ... Selecting previously unselected package texlive-latex-recommended. Preparing to unpack .../161-texlive-latex-recommended_2018.20180505-1_all.deb ... Unpacking texlive-latex-recommended (2018.20180505-1) ... Selecting previously unselected package libeigen3-dev. Preparing to unpack .../162-libeigen3-dev_3.3.4-4_all.deb ... Unpacking libeigen3-dev (3.3.4-4) ... Selecting previously unselected package libnuma-dev:amd64. Preparing to unpack .../163-libnuma-dev_2.0.11-2.2_amd64.deb ... Unpacking libnuma-dev:amd64 (2.0.11-2.2) ... Selecting previously unselected package libhwloc-dev:amd64. Preparing to unpack .../164-libhwloc-dev_1.11.10-2_amd64.deb ... Unpacking libhwloc-dev:amd64 (1.11.10-2) ... Selecting previously unselected package libibverbs-dev:amd64. Preparing to unpack .../165-libibverbs-dev_18.1-1_amd64.deb ... Unpacking libibverbs-dev:amd64 (18.1-1) ... Selecting previously unselected package libopenmpi-dev:amd64. Preparing to unpack .../166-libopenmpi-dev_3.1.0-7_amd64.deb ... Unpacking libopenmpi-dev:amd64 (3.1.0-7) ... Selecting previously unselected package mpi-default-bin. Preparing to unpack .../167-mpi-default-bin_1.13_amd64.deb ... Unpacking mpi-default-bin (1.13) ... Selecting previously unselected package mpi-default-dev. Preparing to unpack .../168-mpi-default-dev_1.13_amd64.deb ... Unpacking mpi-default-dev (1.13) ... Selecting previously unselected package sbuild-build-depends-lammps-dummy. Preparing to unpack .../169-sbuild-build-depends-lammps-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-lammps-dummy (0.invalid.0) ... Setting up libgs9-common (9.22~dfsg+1-0ubuntu1.1) ... Setting up libedit2:amd64 (3.1-20180525-1) ... Setting up libkpathsea6:amd64 (2018.20180416.47457-4) ... Setting up libtexlua52:amd64 (2018.20180416.47457-4) ... Setting up libglvnd0:amd64 (1.0.0+git20180308-3ubuntu1) ... Setting up libexpat1:amd64 (2.2.5-3) ... Setting up libicu60:amd64 (60.2-6ubuntu1) ... Setting up libevent-2.1-6:amd64 (2.1.8-stable-4build1) ... Setting up libptexenc1:amd64 (2018.20180416.47457-4) ... Setting up libevent-core-2.1-6:amd64 (2.1.8-stable-4build1) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up libssl1.0.0:amd64 (1.0.2n-1ubuntu5) ... Setting up libllvm6.0:amd64 (1:6.0-3ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up liblcms2-2:amd64 (2.9-2) ... Setting up libjbig0:amd64 (2.1-3.1build1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up poppler-data (0.4.9-2) ... Setting up htmldoc-common (1.9.3-1) ... Setting up libnuma1:amd64 (2.0.11-2.2) ... Setting up libelf1:amd64 (0.170-0.4) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:amd64 (2.56.1-2ubuntu1) ... No schema files found: doing nothing. Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libtexlua53:amd64 (2018.20180416.47457-4) ... Setting up gettext-base (0.19.8.1-6build1) ... Setting up libsynctex2:amd64 (2018.20180416.47457-4) ... Setting up libjpeg-turbo8:amd64 (1.5.2-0ubuntu5) ... Setting up libpipeline1:amd64 (1.5.0-1) ... Setting up libglapi-mesa:amd64 (18.1.1-1ubuntu1) ... Setting up m4 (1.4.18-1) ... Setting up libfftw3-double3:amd64 (3.3.7-1build1) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libkrb5support0:amd64 (1.16-2build1) ... Setting up ucf (3.0038) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7) ... Setting up libfreetype6:amd64 (2.8.1-2ubuntu2) ... Setting up libmagic-mgc (1:5.33-3) ... Setting up libmagic1:amd64 (1:5.33-3) ... Setting up libdrm-common (2.4.92-1) ... Setting up libgraphite2-3:amd64 (1.3.11-2) ... Setting up libcroco3:amd64 (0.6.12-2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-5) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libfftw3-quad3:amd64 (3.3.7-1build1) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up libjbig2dec0:amd64 (0.14-1) ... Setting up libx11-xcb1:amd64 (2:1.6.5-1) ... Setting up libpixman-1-0:amd64 (0.34.0-2) ... Setting up libjpeg-turbo8-dev:amd64 (1.5.2-0ubuntu5) ... Setting up libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4build1) ... Setting up openmpi-common (3.1.0-7) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up t1utils (1.41-2) ... Processing triggers for systemd (238-5ubuntu1) ... Setting up libltdl7:amd64 (2.4.6-2.1) ... Setting up libijs-0.35:amd64 (0.35-13) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up libfftw3-single3:amd64 (3.3.7-1build1) ... Setting up libpotrace0:amd64 (1.15-1) ... Setting up libsensors4:amd64 (1:3.4.0-4) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libnuma-dev:amd64 (2.0.11-2.2) ... Setting up ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... Setting up libkeyutils1:amd64 (1.5.9-9.2ubuntu3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:amd64 (3.2.29-0ubuntu3) ... Setting up libzzip-0-13:amd64 (0.13.62-3.1) ... Setting up x11-common (1:7.7+19ubuntu7) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.2-1ubuntu3) ... Setting up libfftw3-long3:amd64 (3.3.7-1build1) ... Setting up libtexluajit2:amd64 (2018.20180416.47457-4) ... Setting up libx11-data (2:1.6.5-1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up libdbus-1-3:amd64 (1.12.2-1ubuntu1) ... Setting up fonts-lmodern (2.004.5-3) ... Setting up libavahi-common-data:amd64 (0.7-4ubuntu1) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libpaper1:amd64 (1.1.24+nmu5ubuntu1) ... Creating config file /etc/papersize with new version Setting up libk5crypto3:amd64 (1.16-2build1) ... Setting up libpaper-utils (1.1.24+nmu5ubuntu1) ... Setting up libfftw3-bin (3.3.7-1build1) ... Setting up fontconfig-config (2.12.6-0ubuntu2) ... Setting up tex-common (6.09) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libpsm2-2 (10.3.58-1) ... Setting up libltdl-dev:amd64 (2.4.6-2.1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libeigen3-dev (3.3.4-4) ... Setting up libharfbuzz0b:amd64 (1.7.6-1ubuntu1) ... Setting up libtiff5:amd64 (4.0.9-5) ... Setting up libnl-route-3-200:amd64 (3.2.29-0ubuntu3) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-3) ... Setting up libhwloc5:amd64 (1.11.10-2) ... Setting up libdrm2:amd64 (2.4.92-1) ... Setting up libhwloc-plugins:amd64 (1.11.10-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libdrm-intel1:amd64 (2.4.92-1) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up libfftw3-dev:amd64 (3.3.7-1build1) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:amd64 (2:1.0.9-2) ... Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:amd64 (1.16-2build1) ... Setting up libavahi-common3:amd64 (0.7-4ubuntu1) ... Setting up libdrm-radeon1:amd64 (2.4.92-1) ... Setting up libdrm-nouveau2:amd64 (2.4.92-1) ... Setting up libxcb1:amd64 (1.13-1) ... Setting up libtool (2.4.6-2.1) ... Setting up libibverbs1:amd64 (18.1-1) ... Setting up libxcb-present0:amd64 (1.13-1) ... Setting up libfontconfig1:amd64 (2.12.6-0ubuntu2) ... Setting up libxcb-dri2-0:amd64 (1.13-1) ... Setting up libsm6:amd64 (2:1.2.2-1) ... Setting up libxcb-dri3-0:amd64 (1.13-1) ... Setting up libxcb-glx0:amd64 (1.13-1) ... Setting up libxcb-render0:amd64 (1.13-1) ... Setting up libharfbuzz-icu0:amd64 (1.7.6-1ubuntu1) ... Setting up po-debconf (1.0.20) ... Setting up libdrm-amdgpu1:amd64 (2.4.92-1) ... Setting up libhwloc-dev:amd64 (1.11.10-2) ... Setting up libx11-6:amd64 (2:1.6.5-1) ... Setting up libgl1-mesa-dri:amd64 (18.1.1-1ubuntu1) ... Setting up libpmix2:amd64 (2.1.1-2) ... Setting up librdmacm1:amd64 (18.1-1) ... Setting up libxcb-sync1:amd64 (1.13-1) ... Setting up libgssapi-krb5-2:amd64 (1.16-2build1) ... Setting up ibverbs-providers:amd64 (18.1-1) ... Setting up libxcb-shm0:amd64 (1.13-1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libavahi-client3:amd64 (0.7-4ubuntu1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up openssh-client (1:7.7p1-2) ... Setting up libibverbs-dev:amd64 (18.1-1) ... Setting up libcups2:amd64 (2.2.7-1ubuntu2) ... Setting up libxdamage1:amd64 (1:1.1.4-3) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libfabric1 (1.6.1-3) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up libcupsimage2:amd64 (2.2.7-1ubuntu2) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1) ... Setting up libgs9:amd64 (9.22~dfsg+1-0ubuntu1.1) ... Setting up libglx-mesa0:amd64 (18.1.1-1ubuntu1) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up libxaw7:amd64 (2:1.0.13-1) ... Setting up libcairo2:amd64 (1.15.10-3) ... Setting up libxinerama1:amd64 (2:1.1.3-1) ... Setting up libopenmpi3:amd64 (3.1.0-7) ... Setting up openmpi-bin (3.1.0-7) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: error: no alternatives for mpi update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up texlive-binaries (2018.20180416.47457-4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2018.20180505-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up libglx0:amd64 (1.0.0+git20180308-3ubuntu1) ... Setting up texlive-latex-base (2018.20180505-1) ... Setting up mpi-default-bin (1.13) ... Setting up texlive-latex-recommended (2018.20180505-1) ... Setting up libopenmpi-dev:amd64 (3.1.0-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up mpi-default-dev (1.13) ... Setting up libgl1:amd64 (1.0.0+git20180308-3ubuntu1) ... Setting up libfltk1.1:amd64 (1.1.10-25) ... Setting up htmldoc (1.9.3-1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up sbuild-build-depends-lammps-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.042-1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Processing triggers for systemd (238-5ubuntu1) ... Processing triggers for tex-common (6.09) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-128-generic amd64 (x86_64) Toolchain package versions: binutils_2.30-21ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-23ubuntu2 gcc-7_7.3.0-23ubuntu2 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-23ubuntu2 libstdc++6_8.1.0-8ubuntu1 linux-libc-dev_4.15.0-24.26 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha0ubuntu1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-21ubuntu1 binutils-common_2.30-21ubuntu1 binutils-x86-64-linux-gnu_2.30-21ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-23ubuntu2 dash_0.5.8-2.10 debconf_1.5.67 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu1 file_1:5.33-3 findutils_4.6.0+git+20170828-2 fontconfig-config_2.12.6-0ubuntu2 fonts-dejavu-core_2.37-1 fonts-lmodern_2.004.5-3 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-23ubuntu2 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-23ubuntu2 gcc-7-base_7.3.0-23ubuntu2 gcc-8-base_8.1.0-8ubuntu1 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.8-1ubuntu1 gpg-agent_2.2.8-1ubuntu1 gpgconf_2.2.8-1ubuntu1 gpgv_2.2.8-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 htmldoc_1.9.3-1 htmldoc-common_1.9.3-1 ibverbs-providers_18.1-1 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.7.0~alpha0ubuntu1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-23ubuntu2 libassuan0_2.5.1-2 libatomic1_8.1.0-8ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu1 libaudit1_1:2.8.3-1ubuntu1 libavahi-client3_0.7-4ubuntu1 libavahi-common-data_0.7-4ubuntu1 libavahi-common3_0.7-4ubuntu1 libbinutils_2.30-21ubuntu1 libblkid1_2.32-0.1ubuntu1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcairo2_1.15.10-3 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-8ubuntu1 libcilkrts5_7.3.0-23ubuntu2 libcom-err2_1.44.2-1 libcomerr2_1.44.2-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libcups2_2.2.7-1ubuntu2 libcupsimage2_2.2.7-1ubuntu2 libdb5.3_5.3.28-13.1ubuntu1 libdbus-1-3_1.12.2-1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libdrm-amdgpu1_2.4.92-1 libdrm-common_2.4.92-1 libdrm-intel1_2.4.92-1 libdrm-nouveau2_2.4.92-1 libdrm-radeon1_2.4.92-1 libdrm2_2.4.92-1 libedit2_3.1-20180525-1 libeigen3-dev_3.3.4-4 libelf1_0.170-0.4 libevent-2.1-6_2.1.8-stable-4build1 libevent-core-2.1-6_2.1.8-stable-4build1 libevent-pthreads-2.1-6_2.1.8-stable-4build1 libexpat1_2.2.5-3 libext2fs2_1.44.2-1 libfabric1_1.6.1-3 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu1 libffi6_3.2.1-8 libfftw3-bin_3.3.7-1build1 libfftw3-dev_3.3.7-1build1 libfftw3-double3_3.3.7-1build1 libfftw3-long3_3.3.7-1build1 libfftw3-quad3_3.3.7-1build1 libfftw3-single3_3.3.7-1build1 libfile-stripnondeterminism-perl_0.042-1 libfltk1.1_1.1.10-25 libfontconfig1_2.12.6-0ubuntu2 libfreetype6_2.8.1-2ubuntu2 libgcc-7-dev_7.3.0-23ubuntu2 libgcc1_1:8.1.0-8ubuntu1 libgcrypt20_1.8.2-2ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libgl1_1.0.0+git20180308-3ubuntu1 libgl1-mesa-dri_18.1.1-1ubuntu1 libglapi-mesa_18.1.1-1ubuntu1 libglib2.0-0_2.56.1-2ubuntu1 libglvnd0_1.0.0+git20180308-3ubuntu1 libglx-mesa0_18.1.1-1ubuntu1 libglx0_1.0.0+git20180308-3ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-8ubuntu1 libgpg-error0_1.31-1 libgraphite2-3_1.3.11-2 libgs9_9.22~dfsg+1-0ubuntu1.1 libgs9-common_9.22~dfsg+1-0ubuntu1.1 libgssapi-krb5-2_1.16-2build1 libharfbuzz-icu0_1.7.6-1ubuntu1 libharfbuzz0b_1.7.6-1ubuntu1 libhogweed4_3.4-1 libhwloc-dev_1.11.10-2 libhwloc-plugins_1.11.10-2 libhwloc5_1.11.10-2 libibverbs-dev_18.1-1 libibverbs1_18.1-1 libice6_2:1.0.9-2 libicu60_60.2-6ubuntu1 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libijs-0.35_0.35-13 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-8ubuntu1 libjbig0_2.1-3.1build1 libjbig2dec0_0.14-1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_1.5.2-0ubuntu5 libjpeg-turbo8-dev_1.5.2-0ubuntu5 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c3_0.12.1-1.3 libk5crypto3_1.16-2build1 libkeyutils1_1.5.9-9.2ubuntu3 libkmod2_25-1ubuntu1 libkpathsea6_2018.20180416.47457-4 libkrb5-3_1.16-2build1 libkrb5support0_1.16-2build1 liblcms2-2_2.9-2 libllvm6.0_1:6.0-3ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.1.0-8ubuntu1 libltdl-dev_2.4.6-2.1 libltdl7_2.4.6-2.1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libmpx2_8.1.0-8ubuntu1 libncurses5_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw5_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnl-3-200_3.2.29-0ubuntu3 libnl-route-3-200_3.2.29-0ubuntu3 libnpth0_1.5-4 libnuma-dev_2.0.11-2.2 libnuma1_2.0.11-2.2 libopenmpi-dev_3.1.0-7 libopenmpi3_3.1.0-7 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpaper-utils_1.1.24+nmu5ubuntu1 libpaper1_1.1.24+nmu5ubuntu1 libpciaccess0_0.14-1 libpcre3_2:8.39-9 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-2 libpmix2_2.1.1-2 libpng16-16_1.6.34-1 libpotrace0_1.15-1 libprocps6_2:3.3.12-3ubuntu1 libprocps7_2:3.3.15-2ubuntu1 libpsm-infinipath1_3.3+20.604758e7-5 libpsm2-2_10.3.58-1 libptexenc1_2018.20180416.47457-4 libquadmath0_8.1.0-8ubuntu1 librdmacm1_18.1-1 libreadline7_7.0-5 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsensors4_1:3.4.0-4 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.2-1 libssl1.0.0_1.0.2n-1ubuntu5 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-23ubuntu2 libstdc++6_8.1.0-8ubuntu1 libsynctex2_2018.20180416.47457-4 libsystemd0_238-5ubuntu1 libtasn1-6_4.13-3 libtexlua52_2018.20180416.47457-4 libtexlua53_2018.20180416.47457-4 libtexluajit2_2018.20180416.47457-4 libtiff5_4.0.9-5 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-2.1 libtsan0_8.1.0-8ubuntu1 libubsan0_7.3.0-23ubuntu2 libudev1_238-5ubuntu1 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu1 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libx11-xcb1_2:1.6.5-1 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb-dri2-0_1.13-1 libxcb-dri3-0_1.13-1 libxcb-glx0_1.13-1 libxcb-present0_1.13-1 libxcb-render0_1.13-1 libxcb-shm0_1.13-1 libxcb-sync1_1.13-1 libxcb1_1.13-1 libxdamage1_1:1.1.4-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1 libxfixes3_1:5.0.3-1 libxft2_2.3.2-2 libxi6_2:1.7.9-1 libxinerama1_2:1.1.3-1 libxml2_2.9.4+dfsg1-7 libxmu6_2:1.1.2-2 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxshmfence1_1.3-1 libxt6_1:1.1.5-1 libxxf86vm1_1:1.1.4-1 libzstd1_1.3.3+dfsg-2ubuntu1 libzzip-0-13_0.13.62-3.1 linux-libc-dev_4.15.0-24.26 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu1 mpi-default-bin_1.13 mpi-default-dev_1.13 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 ocl-icd-libopencl1_2.2.11-1ubuntu1 openmpi-bin_3.1.0-7 openmpi-common_3.1.0-7 openssh-client_1:7.7p1-2 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1build1 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_139 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 poppler-data_0.4.9-2 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-lammps-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-5ubuntu1 systemd-sysv_238-5ubuntu1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 t1utils_1.41-2 tar_1.30+dfsg-2 tex-common_6.09 texlive-base_2018.20180505-1 texlive-binaries_2018.20180416.47457-4 texlive-latex-base_2018.20180505-1 texlive-latex-recommended_2018.20180505-1 tzdata_2018e-1 ubuntu-keyring_2018.02.28 ucf_3.0038 util-linux_2.32-0.1ubuntu1 x11-common_1:7.7+19ubuntu7 xdg-utils_1.1.2-1ubuntu3 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Jun 19 10:55:08 2018 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./lammps_0~20180510.gitaa1d815fe-4ubuntu1.dsc dpkg-source: info: extracting lammps in lammps-0~20180510.gitaa1d815fe dpkg-source: info: unpacking lammps_0~20180510.gitaa1d815fe.orig.tar.xz dpkg-source: info: unpacking lammps_0~20180510.gitaa1d815fe-4ubuntu1.debian.tar.xz dpkg-source: info: applying 10_set_configure_flags.patch dpkg-source: info: applying 11_tex_ascii.patch dpkg-source: info: applying 12_disable_user-intel.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15030946 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15030946 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15030946 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package lammps dpkg-buildpackage: info: source version 0~20180510.gitaa1d815fe-4ubuntu1 dpkg-buildpackage: info: source distribution cosmic dpkg-source --before-build lammps-0~20180510.gitaa1d815fe dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' cd src; make clean-all make[2]: Entering directory '/<>/src' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -rf Obj_* make[2]: Leaving directory '/<>/src' dh_clean make[1]: Leaving directory '/<>' dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' cd src; /usr/bin/make yes-all; /usr/bin/make no-lib; /usr/bin/make mpi make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package asphere make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package body make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package class2 make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package colloid make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package compress make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package coreshell make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package dipole make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package gpu make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package granular make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package kim make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package kokkos make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package kspace updating package CORESHELL updating src/pair_born_coul_long_cs.cpp updating src/pair_buck_coul_long_cs.cpp updating src/pair_born_coul_long_cs.h updating src/pair_buck_coul_long_cs.h updating src/pair_coul_long_cs.cpp updating src/pair_coul_long_cs.h updating src/pair_lj_cut_coul_long_cs.cpp updating src/pair_lj_cut_coul_long_cs.h updating package GPU updating src/pair_born_coul_long_gpu.cpp updating src/pair_born_coul_long_gpu.h updating src/pair_buck_coul_long_gpu.cpp updating src/pair_buck_coul_long_gpu.h updating src/pair_coul_long_gpu.cpp updating src/pair_coul_long_gpu.h updating src/pair_lj_charmm_coul_long_gpu.cpp updating src/pair_lj_charmm_coul_long_gpu.h updating src/pair_lj_cut_coul_long_gpu.cpp updating src/pair_lj_cut_coul_long_gpu.h updating src/pair_lj_cut_coul_msm_gpu.cpp updating src/pair_lj_cut_coul_msm_gpu.h updating src/pppm_gpu.cpp updating src/pppm_gpu.h updating package KOKKOS updating src/gridcomm_kokkos.cpp updating src/gridcomm_kokkos.h updating src/pair_buck_coul_long_kokkos.cpp updating src/pair_buck_coul_long_kokkos.h updating src/pair_coul_long_kokkos.cpp updating src/pair_coul_long_kokkos.h updating src/pair_lj_charmm_coul_long_kokkos.cpp updating src/pair_lj_charmm_coul_long_kokkos.h updating src/pair_lj_cut_coul_long_kokkos.cpp updating src/pair_lj_cut_coul_long_kokkos.h updating src/pppm_kokkos.cpp updating src/pppm_kokkos.h make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package latte make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package manybody updating package GPU updating src/pair_eam_alloy_gpu.cpp updating src/pair_eam_alloy_gpu.h updating src/pair_eam_fs_gpu.cpp updating src/pair_eam_fs_gpu.h updating src/pair_eam_gpu.cpp updating src/pair_eam_gpu.h updating src/pair_sw_gpu.cpp updating src/pair_sw_gpu.h updating src/pair_vashishta_gpu.cpp updating src/pair_vashishta_gpu.h updating src/pair_tersoff_gpu.cpp updating src/pair_tersoff_gpu.h updating src/pair_tersoff_mod_gpu.cpp updating src/pair_tersoff_mod_gpu.h updating src/pair_tersoff_zbl_gpu.cpp updating src/pair_tersoff_zbl_gpu.h updating package KOKKOS updating src/pair_eam_kokkos.cpp updating src/pair_eam_kokkos.h updating src/pair_eam_alloy_kokkos.cpp updating src/pair_eam_alloy_kokkos.h updating src/pair_eam_fs_kokkos.cpp updating src/pair_eam_fs_kokkos.h updating src/pair_sw_kokkos.cpp updating src/pair_sw_kokkos.h updating src/pair_vashishta_kokkos.cpp updating src/pair_vashishta_kokkos.h updating src/pair_tersoff_kokkos.cpp updating src/pair_tersoff_kokkos.h updating src/pair_tersoff_mod_kokkos.cpp updating src/pair_tersoff_mod_kokkos.h updating src/pair_tersoff_zbl_kokkos.cpp updating src/pair_tersoff_zbl_kokkos.h make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package mc make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package meam make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package misc make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package molecule updating package GPU updating package KOKKOS updating src/angle_charmm_kokkos.cpp updating src/angle_charmm_kokkos.h updating src/angle_harmonic_kokkos.cpp updating src/angle_harmonic_kokkos.h updating src/atom_vec_angle_kokkos.cpp updating src/atom_vec_angle_kokkos.h updating src/atom_vec_bond_kokkos.cpp updating src/atom_vec_bond_kokkos.h updating src/atom_vec_full_kokkos.cpp updating src/atom_vec_full_kokkos.h updating src/atom_vec_molecular_kokkos.cpp updating src/atom_vec_molecular_kokkos.h updating src/bond_fene_kokkos.cpp updating src/bond_fene_kokkos.h updating src/bond_harmonic_kokkos.cpp updating src/bond_harmonic_kokkos.h updating src/dihedral_charmm_kokkos.cpp updating src/dihedral_charmm_kokkos.h updating src/dihedral_opls_kokkos.cpp updating src/dihedral_opls_kokkos.h updating src/improper_harmonic_kokkos.cpp updating src/improper_harmonic_kokkos.h updating src/pair_lj_charmm_coul_charmm_implicit_kokkos.cpp updating src/pair_lj_charmm_coul_charmm_implicit_kokkos.h updating src/pair_lj_charmm_coul_charmm_kokkos.cpp updating src/pair_lj_charmm_coul_charmm_kokkos.h make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package mpiio make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package mscg make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package opt make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package peri make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package poems make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package python make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package qeq make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package reax make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package replica make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package rigid make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package shock make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package snap updating package KOKKOS updating src/pair_snap_kokkos.cpp updating src/pair_snap_kokkos.h updating src/pair_snap_kokkos_impl.h updating src/sna_kokkos.h updating src/sna_kokkos_impl.h make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package srd make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package voronoi make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-atc make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-awpmd make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-bocs make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-cgdna make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-cgsdk updating package GPU updating src/pair_lj_sdk_coul_long_gpu.cpp updating src/pair_lj_sdk_coul_long_gpu.h updating src/pair_lj_sdk_gpu.cpp updating src/pair_lj_sdk_gpu.h updating package KOKKOS updating src/pair_lj_sdk_kokkos.cpp updating src/pair_lj_sdk_kokkos.h make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-colvars make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-diffraction make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-dpd updating package KOKKOS updating src/atom_vec_dpd_kokkos.cpp updating src/atom_vec_dpd_kokkos.h updating src/fix_eos_table_rx_kokkos.cpp updating src/fix_eos_table_rx_kokkos.h updating src/fix_shardlow_kokkos.cpp updating src/fix_shardlow_kokkos.h updating src/fix_dpd_energy_kokkos.cpp updating src/fix_dpd_energy_kokkos.h updating src/fix_rx_kokkos.cpp updating src/fix_rx_kokkos.h updating src/npair_ssa_kokkos.cpp updating src/npair_ssa_kokkos.h updating src/nbin_ssa_kokkos.cpp updating src/nbin_ssa_kokkos.h updating src/pair_dpd_fdt_energy_kokkos.cpp updating src/pair_dpd_fdt_energy_kokkos.h updating src/pair_exp6_rx_kokkos.cpp updating src/pair_exp6_rx_kokkos.h updating src/pair_multi_lucy_rx_kokkos.cpp updating src/pair_multi_lucy_rx_kokkos.h updating src/pair_table_rx_kokkos.cpp updating src/pair_table_rx_kokkos.h make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-drude make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-eff make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-fep make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-h5md make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-lb make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-manifold make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-meamc make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-meso make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-mgpt make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-misc updating package GPU updating src/pair_lj_sf_dipole_sf_gpu.cpp updating src/pair_lj_sf_dipole_sf_gpu.h make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-mofff make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-molfile make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-netcdf make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-omp make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-phonon make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-qmmm make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-qtb make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-quip make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-reaxc updating package KOKKOS updating src/fix_qeq_reax_kokkos.cpp updating src/fix_qeq_reax_kokkos.h updating src/fix_reaxc_bonds_kokkos.cpp updating src/fix_reaxc_bonds_kokkos.h updating src/fix_reaxc_species_kokkos.cpp updating src/fix_reaxc_species_kokkos.h updating src/pair_reaxc_kokkos.cpp updating src/pair_reaxc_kokkos.h updating package USER-OMP updating src/fix_qeq_comb_omp.cpp updating src/fix_qeq_reax_omp.cpp updating src/pair_comb_omp.cpp updating src/pair_reaxc_omp.cpp updating src/reaxc_bond_orders_omp.cpp updating src/reaxc_bonds_omp.cpp updating src/reaxc_forces_omp.cpp updating src/reaxc_hydrogen_bonds_omp.cpp updating src/reaxc_init_md_omp.cpp updating src/reaxc_multi_body_omp.cpp updating src/reaxc_nonbonded_omp.cpp updating src/reaxc_torsion_angles_omp.cpp updating src/reaxc_valence_angles_omp.cpp updating src/fix_qeq_comb_omp.h updating src/fix_qeq_reax_omp.h updating src/pair_comb_omp.h updating src/pair_reaxc_omp.h updating src/reaxc_bond_orders_omp.h updating src/reaxc_bonds_omp.h updating src/reaxc_forces_omp.h updating src/reaxc_hydrogen_bonds_omp.h updating src/reaxc_init_md_omp.h updating src/reaxc_multi_body_omp.h updating src/reaxc_nonbonded_omp.h updating src/reaxc_torsion_angles_omp.h updating src/reaxc_valence_angles_omp.h make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-smd make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-smtbq make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-sph make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-tally make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-uef make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Installing package user-vtk make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package compress make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package gpu make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package kim make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package kokkos make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package latte make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package meam make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package mpiio make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package mscg make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package poems make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package python make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package reax make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package voronoi make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-atc make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-awpmd make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-colvars make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-h5md make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-lb make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-molfile make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-netcdf make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-qmmm make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-quip make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-smd make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>/src' Uninstalling package user-vtk make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/Obj_mpi' cc -O -o fastdep.exe ../DEPEND/fastdep.c make[3]: Leaving directory '/<>/src/Obj_mpi' make[3]: Entering directory '/<>/src/Obj_mpi' mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_long_dipole_long.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_long_coul_long_opt.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_buck_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_external.cpp ../pair_lj_long_dipole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongDipoleLong::read_restart(FILE*)’: ../pair_lj_long_dipole_long.cpp:351:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_dipole_long.cpp:355:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_dipole_long.cpp:356:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_dipole_long.cpp:357:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_dipole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongDipoleLong::read_restart_settings(FILE*)’: ../pair_lj_long_dipole_long.cpp:386:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_dipole_long.cpp:387:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_dipole_long.cpp:388:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_dipole_long.cpp:389:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_dipole_long.cpp:390:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ewald_order,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../ntopo_dihedral_template.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../run.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../image.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid_nve_omp.cpp ../run.cpp: In member function ‘void LAMMPS_NS::Run::command(int, char**)’: ../run.cpp:173:35: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (stopflag) update->endstep = stop; ~~~~~~~~~~~~~~~~^~~~~~ ../run.cpp:171:38: warning: ‘start’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (startflag) update->beginstep = start; ~~~~~~~~~~~~~~~~~~^~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_full_nsq_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_full_bin_atomonly_omp.cpp ../image.cpp: In member function ‘void LAMMPS_NS::Image::draw_cube(double*, double*, double)’: ../image.cpp:516:31: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] tdir[2] = camDir[2] * t; ~~~~~~~~~~^~~ ../npair_full_nsq_omp.cpp: In function ‘_ZN9LAMMPS_NS15NPairFullNsqOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_full_nsq_omp.cpp:113:63: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_full_nsq_omp.cpp:51:36: note: ‘iatom’ was declared here int i,j,n,itype,jtype,which,imol,iatom; ^~~~~ ../npair_full_nsq_omp.cpp:112:33: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_full_nsq_omp.cpp:52:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_full_nsq_omp.cpp:113:46: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_full_nsq_omp.cpp:51:31: note: ‘imol’ was declared here int i,j,n,itype,jtype,which,imol,iatom; ^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_morse_smooth_linear.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_mdpd_rhosum.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_halffull_newton_omp.cpp ../pair_morse_smooth_linear.cpp: In member function ‘virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart(FILE*)’: ../pair_morse_smooth_linear.cpp:275:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_morse_smooth_linear.cpp:279:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_morse_smooth_linear.cpp:280:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_morse_smooth_linear.cpp:281:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_morse_smooth_linear.cpp:282:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_morse_smooth_linear.cpp: In member function ‘virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart_settings(FILE*)’: ../pair_morse_smooth_linear.cpp:309:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_morse_smooth_linear.cpp:310:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../neigh_list.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_dipole_cut_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_edpd.cpp ../pair_edpd.cpp: In member function ‘virtual void LAMMPS_NS::PairEDPD::read_restart(FILE*)’: ../pair_edpd.cpp:458:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_edpd.cpp:462:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_edpd.cpp:463:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_edpd.cpp:464:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&power[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_edpd.cpp:465:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_edpd.cpp:466:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_edpd.cpp:467:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&powerT[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_edpd.cpp:468:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cutT[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_edpd.cpp:471:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sc[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_edpd.cpp:475:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kc[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_edpd.cpp: In member function ‘virtual void LAMMPS_NS::PairEDPD::read_restart_settings(FILE*)’: ../pair_edpd.cpp:513:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_edpd.cpp:514:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ../pair_edpd.cpp:515:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../rerun.cpp ../pair_edpd.cpp: In member function ‘virtual void LAMMPS_NS::PairEDPD::compute(int, int)’: ../pair_edpd.cpp:224:34: warning: ‘dQr’ may be used uninitialized in this function [-Wmaybe-uninitialized] Q[j] -= ( dQc - dQd + dQr ); ~~~~~~~~~~~~^~~~~~~ ../pair_edpd.cpp:224:28: warning: ‘dQd’ may be used uninitialized in this function [-Wmaybe-uninitialized] Q[j] -= ( dQc - dQd + dQr ); ~~~~^~~~~ ../pair_edpd.cpp:224:28: warning: ‘dQc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_cut_dipole_cut_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutDipoleCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_cut_dipole_cut_omp.cpp:256:34: warning: ‘pjdotr’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += qtmp*r3inv*pjdotr; ~~~~~~~~~~^~~~~~~ ../pair_lj_cut_dipole_cut_omp.cpp:254:35: warning: ‘pidotr’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += -q[j]*r3inv*pidotr; ~~~~~~~~~~~^~~~~~~ ../pair_lj_cut_dipole_cut_omp.cpp:252:29: warning: ‘pdotp’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr; ~~~~~^~~~~~ ../pair_lj_cut_dipole_cut_omp.cpp:252:41: warning: ‘r5inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr; ~~~^~~~~~ ../pair_lj_cut_dipole_cut_omp.cpp:254:29: warning: ‘r3inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += -q[j]*r3inv*pidotr; ~~~~~^~~~~~ ../pair_lj_cut_dipole_cut_omp.cpp:261:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ../pair_lj_cut_dipole_cut_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutDipoleCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_cut_dipole_cut_omp.cpp:256:34: warning: ‘pjdotr’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += qtmp*r3inv*pjdotr; ~~~~~~~~~~^~~~~~~ ../pair_lj_cut_dipole_cut_omp.cpp:254:35: warning: ‘pidotr’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += -q[j]*r3inv*pidotr; ~~~~~~~~~~~^~~~~~~ ../pair_lj_cut_dipole_cut_omp.cpp:252:29: warning: ‘pdotp’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr; ~~~~~^~~~~~ ../pair_lj_cut_dipole_cut_omp.cpp:252:41: warning: ‘r5inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr; ~~~^~~~~~ ../pair_lj_cut_dipole_cut_omp.cpp:254:29: warning: ‘r3inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += -q[j]*r3inv*pidotr; ~~~~~^~~~~~ ../pair_lj_cut_dipole_cut_omp.cpp:261:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_ufm_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_expand_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_dipole_long.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_chunk_atom.cpp ../pair_lj_cut_dipole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart(FILE*)’: ../pair_lj_cut_dipole_long.cpp:495:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_dipole_long.cpp:499:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_dipole_long.cpp:500:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_dipole_long.cpp:501:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_dipole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart_settings(FILE*)’: ../pair_lj_cut_dipole_long.cpp:529:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_dipole_long.cpp:530:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_dipole_long.cpp:531:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_dipole_long.cpp:532:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_sdk_omp.cpp ../pair_lj_cut_dipole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutDipoleLong::compute(int, int)’: ../pair_lj_cut_dipole_long.cpp:297:70: warning: ‘d2’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2); ~~^~~ ../pair_lj_cut_dipole_long.cpp:297:62: warning: ‘d1’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2); ~~^~~ ../pair_lj_cut_dipole_long.cpp:297:54: warning: ‘d0’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2); ~~^~~ ../pair_lj_cut_dipole_long.cpp:294:47: warning: ‘b2’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2); ~~^~~ ../pair_lj_cut_dipole_long.cpp:294:39: warning: ‘b1’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2); ~~^~~ ../pair_lj_cut_dipole_long.cpp:294:31: warning: ‘b0’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2); ~~^~~ ../pair_lj_cut_dipole_long.cpp:297:70: warning: ‘g2’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2); ~~^~~ ../pair_lj_cut_dipole_long.cpp:297:62: warning: ‘g1’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2); ~~^~~ ../pair_lj_cut_dipole_long.cpp:297:54: warning: ‘g0’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2); ~~^~~ ../pair_lj_cut_dipole_long.cpp:302:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~~~~~~~~~~~~~^~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_mdpd.cpp In file included from ../angle_sdk_omp.cpp:28:0: ../lj_sdk_common.h:30:14: warning: ‘int LAMMPS_NS::LJSDKParms::find_lj_type(const char*, const char* const*)’ defined but not used [-Wunused-function] static int find_lj_type(const char *label, ^~~~~~~~~~~~ ../compute_chunk_atom.cpp: In member function ‘void LAMMPS_NS::ComputeChunkAtom::atom2bin1d()’: ../compute_chunk_atom.cpp:1512:51: warning: ‘prd’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (xremap < boxlo[idim]) xremap += prd[idim]; ^ ../compute_chunk_atom.cpp:1513:31: warning: ‘boxhi’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (xremap >= boxhi[idim]) xremap -= prd[idim]; ^ ../compute_chunk_atom.cpp:1512:30: warning: ‘boxlo’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (xremap < boxlo[idim]) xremap += prd[idim]; ^ ../compute_chunk_atom.cpp: In member function ‘void LAMMPS_NS::ComputeChunkAtom::atom2bin2d()’: ../compute_chunk_atom.cpp:1614:51: warning: ‘prd’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (yremap < boxlo[jdim]) yremap += prd[jdim]; ^ ../compute_chunk_atom.cpp:1615:31: warning: ‘boxhi’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (yremap >= boxhi[jdim]) yremap -= prd[jdim]; ^ ../compute_chunk_atom.cpp:1614:30: warning: ‘boxlo’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (yremap < boxlo[jdim]) yremap += prd[jdim]; ^ ../compute_chunk_atom.cpp: In member function ‘void LAMMPS_NS::ComputeChunkAtom::atom2bin3d()’: ../compute_chunk_atom.cpp:1747:51: warning: ‘prd’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (zremap < boxlo[kdim]) zremap += prd[kdim]; ^ ../compute_chunk_atom.cpp:1748:31: warning: ‘boxhi’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (zremap >= boxhi[kdim]) zremap -= prd[kdim]; ^ ../compute_chunk_atom.cpp:1747:30: warning: ‘boxlo’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (zremap < boxlo[kdim]) zremap += prd[kdim]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_buck.cpp ../compute_chunk_atom.cpp: In constructor ‘LAMMPS_NS::ComputeChunkAtom::ComputeChunkAtom(LAMMPS_NS::LAMMPS*, int, char**)’: ../compute_chunk_atom.cpp:416:52: warning: ‘scale’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (minflag[idim] == COORD) minvalue[idim] *= scale; ~~~~~~~~~~~~~~~^~~~~~~~ ../compute_chunk_atom.cpp:263:24: warning: ‘idim’ may be used uninitialized in this function [-Wmaybe-uninitialized] maxvalue[idim] = force->numeric(FLERR,arg[iarg+3]); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../compute_chunk_atom.cpp:198:18: warning: ‘iarg’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (iarg+2 > narg) error->all(FLERR,"Illegal compute chunk/atom command"); ~~~~~~~^~~~~~ ../pair_buck.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck::read_restart(FILE*)’: ../pair_buck.cpp:312:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck.cpp:316:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck.cpp:317:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck.cpp:318:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck.cpp:319:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck::read_restart_settings(FILE*)’: ../pair_buck.cpp:348:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck.cpp:349:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck.cpp:350:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck.cpp:351:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_charge.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_ave_correlate_long.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nve_eff.cpp ../fix_ave_correlate_long.cpp: In member function ‘void LAMMPS_NS::FixAveCorrelateLong::add(int, double, int)’: ../fix_ave_correlate_long.cpp:635:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (insertindex[k]==p) insertindex[k]=0; ~~~~~~~~~~~~~~^~~ ../fix_ave_correlate_long.cpp: In member function ‘void LAMMPS_NS::FixAveCorrelateLong::add(int, double, double, int)’: ../fix_ave_correlate_long.cpp:687:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (insertindex[k]==p) insertindex[k]=0; ~~~~~~~~~~~~~~^~~ ../fix_ave_correlate_long.cpp: In member function ‘virtual void LAMMPS_NS::FixAveCorrelateLong::restart(char*)’: ../fix_ave_correlate_long.cpp:782:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] || (pin!=p) || (min!=m)) ~~~^~~ ../fix_ave_correlate_long.cpp: In member function ‘virtual void LAMMPS_NS::FixAveCorrelateLong::end_of_step()’: ../fix_ave_correlate_long.cpp:506:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../temper_grem.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_table_rx.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_resquared_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_beck_omp.cpp ../pair_table_rx.cpp: In member function ‘void LAMMPS_NS::PairTableRX::getMixingWeights(int, double&, double&, double&, double&)’: ../pair_table_rx.cpp:580:16: warning: ‘nMolecules2’ may be used uninitialized in this function [-Wmaybe-uninitialized] mixWtSite2 = nMolecules2; ~~~~~~~~~~~^~~~~~~~~~~~~ ../pair_table_rx.cpp:579:19: warning: ‘nMoleculesOld2’ may be used uninitialized in this function [-Wmaybe-uninitialized] mixWtSite2old = nMoleculesOld2; ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_table_rx.cpp:575:16: warning: ‘fraction2’ may be used uninitialized in this function [-Wmaybe-uninitialized] mixWtSite2 = fraction2; ~~~~~~~~~~~^~~~~~~~~~~ ../pair_table_rx.cpp:574:19: warning: ‘fractionOld2’ may be used uninitialized in this function [-Wmaybe-uninitialized] mixWtSite2old = fractionOld2; ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_setforce.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_tip4p_long_soft.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid_nve.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../write_dump.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reset_ids.cpp ../pair_lj_cut_tip4p_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTIP4PLongSoft::read_restart_settings(FILE*)’: ../pair_lj_cut_tip4p_long_soft.cpp:525:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_soft.cpp:526:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_soft.cpp:527:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_soft.cpp:528:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_soft.cpp:529:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_soft.cpp:531:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_soft.cpp:532:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_soft.cpp:533:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_soft.cpp:534:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_soft.cpp:535:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../write_dump.cpp: In member function ‘void LAMMPS_NS::WriteDump::command(int, char**)’: ../write_dump.cpp:84:14: warning: ‘dump’ may be used uninitialized in this function [-Wmaybe-uninitialized] dump->write(); ~~~~~~~~~~~^~ ../pair_lj_cut_tip4p_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTIP4PLongSoft::compute(int, int)’: ../pair_lj_cut_tip4p_long_soft.cpp:397:24: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ~~~~~~~~~~~^~~~~ ../pair_lj_cut_tip4p_long_soft.cpp:396:24: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ~~~~~~~~~~~^~~~~ ../pair_lj_cut_tip4p_long_soft.cpp:324:18: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fH[0]; ^ ../pair_lj_cut_tip4p_long_soft.cpp:320:18: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fH[0]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_table_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_full_bin_atomonly.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_angle_local.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_buck_mdf.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../region_plane.cpp ../compute_angle_local.cpp: In member function ‘int LAMMPS_NS::ComputeAngleLocal::compute_angles(int)’: ../compute_angle_local.cpp:167:39: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (tag[atom2] != onemols[imol]->angle_atom2[atom2][i]) continue; ^ ../compute_angle_local.cpp:116:17: warning: ‘ebuf’ may be used uninitialized in this function [-Wmaybe-uninitialized] double *tbuf,*ebuf; ^~~~ ../compute_angle_local.cpp:202:17: warning: ‘tbuf’ may be used uninitialized in this function [-Wmaybe-uninitialized] tbuf[n] = 180.0*acos(c)/MY_PI; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../random_mars.cpp ../pair_buck_mdf.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckMDF::read_restart(FILE*)’: ../pair_buck_mdf.cpp:345:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_mdf.cpp:349:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_mdf.cpp:350:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_mdf.cpp:351:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_mdf.cpp:352:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_mdf.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckMDF::read_restart_settings(FILE*)’: ../pair_buck_mdf.cpp:381:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_mdf.cpp:382:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_mdf.cpp:383:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_mdf.cpp:384:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_eos_table_rx.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_mvv_edpd.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_ufm.cpp ../fix_eos_table_rx.cpp: In member function ‘void LAMMPS_NS::FixEOStableRX::read_table(LAMMPS_NS::FixEOStableRX::Table*, LAMMPS_NS::FixEOStableRX::Table*, char*, char*)’: ../fix_eos_table_rx.cpp:435:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ ../fix_eos_table_rx.cpp:437:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../fix_eos_table_rx.cpp:438:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../fix_eos_table_rx.cpp:444:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../fix_eos_table_rx.cpp:472:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../fix_eos_table_rx.cpp:474:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_expand.cpp ../pair_ufm.cpp: In member function ‘virtual void LAMMPS_NS::PairUFM::read_restart(FILE*)’: ../pair_ufm.cpp:290:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_ufm.cpp:294:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_ufm.cpp:295:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_ufm.cpp:296:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_ufm.cpp: In member function ‘virtual void LAMMPS_NS::PairUFM::read_restart_settings(FILE*)’: ../pair_ufm.cpp:324:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_ufm.cpp:325:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_ufm.cpp:326:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_hybrid.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_langevin_eff.cpp ../pair_lj_expand.cpp: In member function ‘virtual void LAMMPS_NS::PairLJExpand::read_restart(FILE*)’: ../pair_lj_expand.cpp:328:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_expand.cpp:332:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_expand.cpp:333:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_expand.cpp:334:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_expand.cpp:335:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_expand.cpp: In member function ‘virtual void LAMMPS_NS::PairLJExpand::read_restart_settings(FILE*)’: ../pair_lj_expand.cpp:364:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_expand.cpp:365:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_expand.cpp:366:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_expand.cpp:367:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::PairHybrid::read_restart(FILE*)’: ../pair_hybrid.cpp:668:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_hybrid.cpp:685:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../pair_hybrid.cpp:688:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_hybrid.cpp:694:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../pair_hybrid.cpp:698:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(special_lj[m],sizeof(double),4,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_hybrid.cpp:701:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../pair_hybrid.cpp:705:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(special_coul[m],sizeof(double),4,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_harmonic.cpp ../pair_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::PairHybrid::coeff(int, char**)’: ../pair_hybrid.cpp:393:7: warning: ‘multflag’ may be used uninitialized in this function [-Wmaybe-uninitialized] int multflag; ^~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_wall.cpp ../angle_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::AngleHarmonic::read_restart(FILE*)’: ../angle_harmonic.cpp:219:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_harmonic.cpp:220:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_pressure_uef.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper_cossq_omp.cpp ../fix_wall.cpp: In constructor ‘LAMMPS_NS::FixWall::FixWall(LAMMPS_NS::LAMMPS*, int, char**)’: ../fix_wall.cpp:77:24: warning: ‘newwall’ may be used uninitialized in this function [-Wmaybe-uninitialized] wallwhich[nwall] = newwall; ~~~~~~~~~~~~~~~~~^~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_manifoldforce.cpp ../compute_pressure_uef.cpp: In member function ‘virtual void LAMMPS_NS::ComputePressureUef::compute_vector()’: ../compute_pressure_uef.cpp:150:31: warning: ‘ke_tensor’ may be used uninitialized in this function [-Wmaybe-uninitialized] vector[1] = (ke_tensor[1] + virial[1]) * inv_volume * nktv2p; ~~~~~~~~~~~^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_edip.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_resquared.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_sf_dipole_sf.cpp ../pair_resquared.cpp: In member function ‘virtual void LAMMPS_NS::PairRESquared::read_restart(FILE*)’: ../pair_resquared.cpp:445:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setwell[i],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_resquared.cpp:448:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&well[i][0],sizeof(double),3,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_resquared.cpp:452:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_resquared.cpp:456:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_resquared.cpp:457:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_resquared.cpp:458:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_resquared.cpp: In member function ‘virtual void LAMMPS_NS::PairRESquared::read_restart_settings(FILE*)’: ../pair_resquared.cpp:486:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_resquared.cpp:487:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_airebo_omp.cpp ../pair_lj_sf_dipole_sf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSFDipoleSF::read_restart(FILE*)’: ../pair_lj_sf_dipole_sf.cpp:490:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sf_dipole_sf.cpp:494:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sf_dipole_sf.cpp:495:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sf_dipole_sf.cpp:496:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sf_dipole_sf.cpp:497:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sf_dipole_sf.cpp:498:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&scale[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sf_dipole_sf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSFDipoleSF::read_restart_settings(FILE*)’: ../pair_lj_sf_dipole_sf.cpp:527:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sf_dipole_sf.cpp:528:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sf_dipole_sf.cpp:529:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sf_dipole_sf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSFDipoleSF::compute(int, int)’: ../pair_lj_sf_dipole_sf.cpp:281:25: warning: ‘rcutlj6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] rcutlj6inv*(-7*lj3[itype][jtype]*rcutlj6inv+4*lj4[itype][jtype]); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sf_dipole_sf.cpp:280:18: warning: ‘rcutlj2inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] rcutlj6inv*(6*lj3[itype][jtype]*rcutlj6inv-3*lj4[itype][jtype])* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rsq*rcutlj2inv+ ~~~^~~~~~~~~~~ ../pair_lj_sf_dipole_sf.cpp:273:37: warning: ‘qpfac’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += qtmp * r3inv * qpfac * pjdotr; ~~~~~~~~~~~~~^~~~~~~ ../pair_lj_sf_dipole_sf.cpp:271:38: warning: ‘pqfac’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += -q[j] * r3inv * pqfac * pidotr; ~~~~~~~~~~~~~~^~~~~~~ ../pair_lj_sf_dipole_sf.cpp:269:29: warning: ‘bfac’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sf_dipole_sf.cpp:273:45: warning: ‘pjdotr’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += qtmp * r3inv * qpfac * pjdotr; ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ../pair_lj_sf_dipole_sf.cpp:271:46: warning: ‘pidotr’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += -q[j] * r3inv * pqfac * pidotr; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ../pair_lj_sf_dipole_sf.cpp:269:37: warning: ‘pdotp’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr); ~~~~~^~~~~~ ../pair_lj_sf_dipole_sf.cpp:269:49: warning: ‘r5inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr); ~~~^~~~~~ ../pair_lj_sf_dipole_sf.cpp:271:30: warning: ‘r3inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += -q[j] * r3inv * pqfac * pidotr; ~~~~~~^~~~~~~ ../pair_lj_sf_dipole_sf.cpp:278:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+ ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_sf_dipole_sf.cpp: In member function ‘virtual double LAMMPS_NS::PairLJSFDipoleSF::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_sf_dipole_sf.cpp:626:17: warning: ‘rcutlj6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] rcutlj6inv*(-7*lj3[itype][jtype]*rcutlj6inv+4*lj4[itype][jtype]); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sf_dipole_sf.cpp:625:10: warning: ‘rcutlj2inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] rcutlj6inv*(6*lj3[itype][jtype]*rcutlj6inv-3*lj4[itype][jtype])* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rsq*rcutlj2inv+ ~~~^~~~~~~~~~~ ../pair_lj_sf_dipole_sf.cpp:623:37: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+ ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_sf_dipole_sf.cpp:618:29: warning: ‘qpfac’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += qtmp * r3inv * qpfac * pjdotr; ~~~~~~~~~~~~~^~~~~~~ ../pair_lj_sf_dipole_sf.cpp:616:30: warning: ‘pqfac’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += -q[j] * r3inv * pqfac * pidotr; ~~~~~~~~~~~~~~^~~~~~~ ../pair_lj_sf_dipole_sf.cpp:614:21: warning: ‘bfac’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sf_dipole_sf.cpp:614:41: warning: ‘r5inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr); ~~~^~~~~~ ../pair_lj_sf_dipole_sf.cpp:616:22: warning: ‘r3inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += -q[j] * r3inv * pqfac * pidotr; ~~~~~~^~~~~~~ ../pair_lj_sf_dipole_sf.cpp:618:37: warning: ‘pjdotr’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += qtmp * r3inv * qpfac * pjdotr; ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ../pair_lj_sf_dipole_sf.cpp:616:38: warning: ‘pidotr’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += -q[j] * r3inv * pqfac * pidotr; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ../pair_lj_sf_dipole_sf.cpp:614:29: warning: ‘pdotp’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr); ~~~~~^~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cubic_omp.cpp ../pair_resquared.cpp: In member function ‘virtual void LAMMPS_NS::PairRESquared::compute(int, int)’: ../pair_resquared.cpp:195:26: warning: ‘one_eng’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (eflag) evdwl = factor_lj*one_eng; ~~~~~~^~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_pair_local.cpp ../pair_airebo_omp.cpp: In member function ‘void LAMMPS_NS::PairAIREBOOMP::TORSION_thr(int, int, int, int, double*, LAMMPS_NS::ThrData*)’: ../pair_airebo_omp.cpp:1001:26: warning: ‘evdwl’ may be used uninitialized in this function [-Wmaybe-uninitialized] ev_tally4_thr(this,i,j,k,l,evdwl,fi,fj,fk,delil,del34,delkl,thr); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cubic_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCubicOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_cubic_omp.cpp:150:40: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] (PHIS + DPHIDS*t - A3*t*t*t/6.0); ~~~~~~^~ ../pair_lj_cubic_omp.cpp:147:13: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]); ^~~~~ ../pair_lj_cubic_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCubicOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_cubic_omp.cpp:150:40: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] (PHIS + DPHIDS*t - A3*t*t*t/6.0); ~~~~~~^~ ../pair_lj_cubic_omp.cpp:147:13: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]); ^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nphug_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_allocate.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_respa_bin_newton_tri_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_gran_hertz_history_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_ave_time.cpp ../npair_half_respa_bin_newton_tri_omp.cpp: In function ‘_ZN9LAMMPS_NS29NPairHalfRespaBinNewtonTriOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_half_respa_bin_newton_tri_omp.cpp:155:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_bin_newton_tri_omp.cpp:54:54: note: ‘iatom’ was declared here int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom; ^~~~~ ../npair_half_respa_bin_newton_tri_omp.cpp:154:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_respa_bin_newton_tri_omp.cpp:55:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_half_respa_bin_newton_tri_omp.cpp:155:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_bin_newton_tri_omp.cpp:54:49: note: ‘imol’ was declared here int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom; ^~~~ ../npair_half_respa_bin_newton_tri_omp.cpp:173:53: warning: ‘n_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ~~~~~~~~^~ ../npair_half_respa_bin_newton_tri_omp.cpp:54:40: note: ‘n_middle’ was declared here int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom; ^~~~~~~~ ../npair_half_respa_bin_newton_tri_omp.cpp:173:55: warning: ‘neighptr_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ^ ../npair_half_respa_bin_newton_tri_omp.cpp:57:34: note: ‘neighptr_middle’ was declared here int *neighptr,*neighptr_inner,*neighptr_middle; ^~~~~~~~~~~~~~~ In file included from ../neigh_list.h:18:0, from ../npair_half_respa_bin_newton_tri_omp.cpp:17: ../my_page.h:224:9: warning: ‘ipage_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] errorflag = 2; ^~~~~~~~~ ../npair_half_respa_bin_newton_tri_omp.cpp:94:16: note: ‘ipage_middle’ was declared here MyPage *ipage_middle; ^~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_peri_neigh_omp.cpp ../pair_airebo_omp.cpp: In member function ‘void LAMMPS_NS::PairAIREBOOMP::FLJ_thr(int, int, int, int, int, double*, LAMMPS_NS::ThrData*)’: ../pair_airebo_omp.cpp:571:21: warning: ‘dwij’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair = dC*dwij / rij; ~~^~~~~ ../pair_airebo_omp.cpp:615:32: warning: ‘dwmjS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair3 = dC*wikS*wkmS*dwmjS / rmjS; ~~~~~~~~~~~~^~~~~~ ../pair_airebo_omp.cpp:610:33: warning: ‘wmjS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair2 = dC*wikS*dwkmS*wmjS / rkmS; ~~~~~~~~~~~~~^~~~~ ../pair_airebo_omp.cpp:610:27: warning: ‘dwkmS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair2 = dC*wikS*dwkmS*wmjS / rkmS; ~~~~~~~^~~~~~ ../pair_airebo_omp.cpp:615:27: warning: ‘wkmS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair3 = dC*wikS*wkmS*dwmjS / rmjS; ~~~~~~~^~~~~ ../pair_airebo_omp.cpp:586:27: warning: ‘dwkjS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair2 = dC*wikS*dwkjS / rkjS; ~~~~~~~^~~~~~ ../pair_airebo_omp.cpp:582:28: warning: ‘wkjS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair1 = dC*dwikS*wkjS / rikS; ~~~~~~~~^~~~~ ../pair_airebo_omp.cpp:582:22: warning: ‘dwikS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair1 = dC*dwikS*wkjS / rikS; ~~^~~~~~ ../pair_airebo_omp.cpp:586:22: warning: ‘wikS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair2 = dC*wikS*dwkjS / rkjS; ~~^~~~~ ../pair_airebo_omp.cpp:615:18: warning: ‘rmjS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair3 = dC*wikS*wkmS*dwmjS / rmjS; ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_airebo_omp.cpp:610:18: warning: ‘rkmS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair2 = dC*wikS*dwkmS*wmjS / rkmS; ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_airebo_omp.cpp:586:18: warning: ‘rkjS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair2 = dC*wikS*dwkjS / rkjS; ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../pair_airebo_omp.cpp:582:18: warning: ‘rikS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair1 = dC*dwikS*wkjS / rikS; ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../pair_airebo_omp.cpp:641:25: warning: ‘atomm’ may be used uninitialized in this function [-Wmaybe-uninitialized] v_tally4_thr(atomi,atomj,atomk,atomm,fi,fj,fk,delimS,deljmS,delkmS,thr); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_airebo_omp.cpp:641:25: warning: ‘atomk’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../fix_ave_time.cpp: In member function ‘void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)’: ../fix_ave_time.cpp:700:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ ../fix_ave_time.cpp: In member function ‘void LAMMPS_NS::FixAveTime::invoke_vector(LAMMPS_NS::bigint)’: ../fix_ave_time.cpp:911:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ ../fix_ave_time.cpp: In member function ‘int LAMMPS_NS::FixAveTime::column_length(int)’: ../fix_ave_time.cpp:968:14: warning: ‘lengthone’ may be used uninitialized in this function [-Wmaybe-uninitialized] else if (lengthone != length) ^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_wolf_omp.cpp ../fix_ave_time.cpp: In member function ‘void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)’: ../fix_ave_time.cpp:629:20: warning: ‘scalar’ may be used uninitialized in this function [-Wmaybe-uninitialized] else vector[i] += scalar; ~~~~~~~~~~^~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_nonlinear.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_multi_newton_tri.cpp ../fix_ave_time.cpp: In constructor ‘LAMMPS_NS::FixAveTime::FixAveTime(LAMMPS_NS::LAMMPS*, int, char**)’: ../fix_ave_time.cpp:411:9: warning: ‘value’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (value == -1) ^~ ../bond_nonlinear.cpp: In member function ‘virtual void LAMMPS_NS::BondNonlinear::read_restart(FILE*)’: ../bond_nonlinear.cpp:171:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_nonlinear.cpp:172:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_nonlinear.cpp:173:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lamda[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_soft.cpp ../npair_half_multi_newton_tri.cpp: In member function ‘virtual void LAMMPS_NS::NPairHalfMultiNewtonTri::build(LAMMPS_NS::NeighList*)’: ../npair_half_multi_newton_tri.cpp:121:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_multi_newton_tri.cpp:122:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_multi_newton_tri.cpp:122:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_sf_dipole_sf_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_harmonic_shift.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_npt_uef.cpp ../pair_lj_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutSoft::read_restart(FILE*)’: ../pair_lj_cut_soft.cpp:657:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_soft.cpp:661:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_soft.cpp:662:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_soft.cpp:663:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_soft.cpp:664:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutSoft::read_restart_settings(FILE*)’: ../pair_lj_cut_soft.cpp:697:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_soft.cpp:698:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphalj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_soft.cpp:700:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_soft.cpp:701:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_soft.cpp:702:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_soft.cpp:703:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_fourier_simple.cpp ../pair_lj_cut_soft.cpp: In member function ‘virtual double LAMMPS_NS::PairLJCutSoft::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_cut_soft.cpp:755:31: warning: ‘denlj’ may be used uninitialized in this function [-Wmaybe-uninitialized] (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype]; ~~~^~~~~~ ../pair_lj_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutSoft::compute_outer(int, int)’: ../pair_lj_cut_soft.cpp:414:29: warning: ‘fpair’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (evflag) ev_tally(i,j,nlocal,newton_pair, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ evdwl,0.0,fpair,delx,dely,delz); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_harmonic_shift.cpp: In member function ‘virtual void LAMMPS_NS::BondHarmonicShift::read_restart(FILE*)’: ../bond_harmonic_shift.cpp:181:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_harmonic_shift.cpp:182:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_harmonic_shift.cpp:183:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r1[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp: In member function ‘void LAMMPS_NS::PairLJSFDipoleSFOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_sf_dipole_sf_omp.cpp:291:25: warning: ‘rcutlj6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] rcutlj6inv*(-7*lj3[itype][jtype]*rcutlj6inv+4*lj4[itype][jtype]); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:290:18: warning: ‘rcutlj2inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] rcutlj6inv*(6*lj3[itype][jtype]*rcutlj6inv-3*lj4[itype][jtype])* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rsq*rcutlj2inv+ ~~~^~~~~~~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:283:37: warning: ‘qpfac’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += qtmp * r3inv * qpfac * pjdotr; ~~~~~~~~~~~~~^~~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:281:38: warning: ‘pqfac’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += -q[j] * r3inv * pqfac * pidotr; ~~~~~~~~~~~~~~^~~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:279:29: warning: ‘bfac’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:283:45: warning: ‘pjdotr’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += qtmp * r3inv * qpfac * pjdotr; ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:281:46: warning: ‘pidotr’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += -q[j] * r3inv * pqfac * pidotr; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:279:37: warning: ‘pdotp’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr); ~~~~~^~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:279:49: warning: ‘r5inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr); ~~~^~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:281:30: warning: ‘r3inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += -q[j] * r3inv * pqfac * pidotr; ~~~~~~^~~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:288:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_evaporate.cpp ../pair_lj_sf_dipole_sf_omp.cpp: In member function ‘void LAMMPS_NS::PairLJSFDipoleSFOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_sf_dipole_sf_omp.cpp:291:25: warning: ‘rcutlj6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] rcutlj6inv*(-7*lj3[itype][jtype]*rcutlj6inv+4*lj4[itype][jtype]); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:290:18: warning: ‘rcutlj2inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] rcutlj6inv*(6*lj3[itype][jtype]*rcutlj6inv-3*lj4[itype][jtype])* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rsq*rcutlj2inv+ ~~~^~~~~~~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:283:37: warning: ‘qpfac’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += qtmp * r3inv * qpfac * pjdotr; ~~~~~~~~~~~~~^~~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:281:38: warning: ‘pqfac’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += -q[j] * r3inv * pqfac * pidotr; ~~~~~~~~~~~~~~^~~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:279:29: warning: ‘bfac’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:283:45: warning: ‘pjdotr’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += qtmp * r3inv * qpfac * pjdotr; ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:281:46: warning: ‘pidotr’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += -q[j] * r3inv * pqfac * pidotr; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:279:37: warning: ‘pdotp’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr); ~~~~~^~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:279:49: warning: ‘r5inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr); ~~~^~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:281:30: warning: ‘r3inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += -q[j] * r3inv * pqfac * pidotr; ~~~~~~^~~~~~~ ../pair_lj_sf_dipole_sf_omp.cpp:288:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_body.cpp ../angle_fourier_simple.cpp: In member function ‘virtual void LAMMPS_NS::AngleFourierSimple::read_restart(FILE*)’: ../angle_fourier_simple.cpp:241:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_fourier_simple.cpp:242:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_fourier_simple.cpp:243:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&N[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_bop.cpp ../fix_evaporate.cpp: In member function ‘virtual void LAMMPS_NS::FixEvaporate::pre_exchange()’: ../fix_evaporate.cpp:324:31: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] } else if (me == proc && i == iatom) { ~~~~~~~~~~~^~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_full_bin_ghost.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_eos_cv.cpp ../pair_bop.cpp: In member function ‘void LAMMPS_NS::PairBOP::read_table(char*)’: ../pair_bop.cpp:4991:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(j=0;jspecial[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_full_bin_ghost.cpp:109:67: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_full_bin_ghost.cpp:109:50: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper_ring.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_adp.cpp ../improper_ring.cpp: In member function ‘virtual void LAMMPS_NS::ImproperRing::read_restart(FILE*)’: ../improper_ring.cpp:332:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_ring.cpp:333:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_adp.cpp: In member function ‘void LAMMPS_NS::PairADP::read_file(char*)’: ../pair_adp.cpp:564:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_adp.cpp:565:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_adp.cpp:566:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_adp.cpp:567:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_adp.cpp:592:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_adp.cpp:616:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_adp.cpp: In member function ‘void LAMMPS_NS::PairADP::grab(FILE*, int, double*)’: ../pair_adp.cpp:928:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../manifold_plane.cpp ../pair_bop.cpp:5223:5: warning: ‘nws’ may be used uninitialized in this function [-Wmaybe-uninitialized] if(nws==3) { ^~ ../pair_bop.cpp:4968:13: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] int i,j,k,n,m; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_hybrid_overlay.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../comm.cpp ../pair_hybrid_overlay.cpp: In member function ‘virtual void LAMMPS_NS::PairHybridOverlay::coeff(int, char**)’: ../pair_hybrid_overlay.cpp:47:7: warning: ‘multflag’ may be used uninitialized in this function [-Wmaybe-uninitialized] int multflag; ^~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_respa_nsq_newton.cpp ../pair_adp.cpp: In member function ‘void LAMMPS_NS::PairADP::read_file(char*)’: ../pair_adp.cpp:641:24: warning: ‘fp’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (me == 0) grab(fp,file->nr,&file->w2r[i][j][1]); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_damage_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_sphere.cpp ../npair_half_respa_nsq_newton.cpp: In member function ‘virtual void LAMMPS_NS::NPairHalfRespaNsqNewton::build(LAMMPS_NS::NeighList*)’: ../npair_half_respa_nsq_newton.cpp:165:53: warning: ‘neighptr_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ^ ../npair_half_respa_nsq_newton.cpp:147:33: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_respa_nsq_newton.cpp:148:63: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_nsq_newton.cpp:148:46: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_nsq_newton.cpp:165:51: warning: ‘n_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ~~~~~~~~^~ In file included from ../neigh_list.h:18:0, from ../npair_half_respa_nsq_newton.cpp:16: ../my_page.h:172:12: warning: ‘ipage_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] ndatum += n; ~~~~~~~^~~~ ../npair_half_respa_nsq_newton.cpp:78:16: note: ‘ipage_middle’ was declared here MyPage *ipage_middle; ^~~~~~~~~~~~ ../npair_half_respa_nsq_newton.cpp:189:28: warning: ‘firstneigh_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] firstneigh_middle[i] = neighptr_middle; ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ../npair_half_respa_nsq_newton.cpp:190:26: warning: ‘numneigh_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] numneigh_middle[i] = n_middle; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../npair_half_respa_nsq_newton.cpp:188:26: warning: ‘ilist_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] ilist_middle[inum] = i; ~~~~~~~~~~~~~~~~~~~^~~ ../npair_half_respa_nsq_newton.cpp:117:37: warning: ‘bitmask’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (includegroup && !(mask[j] & bitmask)) continue; ~~~~~~~~~^~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../group.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nve_sphere_omp.cpp ../group.cpp: In member function ‘void LAMMPS_NS::Group::read_restart(FILE*)’: ../group.cpp:730:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&ngroup,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../group.cpp:742:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../group.cpp:746:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(names[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_bop.cpp: In member function ‘double LAMMPS_NS::PairBOP::sigmaBo(int, int)’: ../pair_bop.cpp:3753:27: warning: ‘xtmp[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] ev_tally_xyz(bt_i,bt_j,nlocal,newton_pair,0.0,0.0,ftmp[0],ftmp[1] ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ,ftmp[2],xtmp[0],xtmp[1],xtmp[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_bop.cpp:3753:27: warning: ‘xtmp[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_bop.cpp:3753:27: warning: ‘xtmp[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_bop.cpp:1767:36: warning: ‘r_jk’ may be used uninitialized in this function [-Wmaybe-uninitialized] dcA_ikj[0][0]=(-dis_jk[0]*r_ik*r_jk-cosAng_ikj ~~~~~~~~~~ *-dis_ik[0]*r_jk*r_jk)/(r_ik*r_ik*r_jk*r_jk); ~~~~~~~~~~~^~~~~ ../pair_bop.cpp:1501:30: warning: ‘temp_jk’ may be used uninitialized in this function [-Wmaybe-uninitialized] bt_sg[nb_jk].temp=temp_jk; ~~~~~~~~~~~~~~~~~^~~~~~~~ ../pair_bop.cpp:1766:36: warning: ‘dis_jk[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] dcA_ikj[0][0]=(-dis_jk[0]*r_ik*r_jk-cosAng_ikj ^~~~~~~~~~ ../pair_bop.cpp:1764:62: warning: ‘dis_jk[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] cosAng_ikj=(dis_ik[0]*dis_jk[0]+dis_ik[1]*dis_jk[1] ~~~~~~~~~^~~~~~~~~~ ../pair_bop.cpp:1765:35: warning: ‘dis_jk[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] +dis_ik[2]*dis_jk[2])/(r_ik*r_jk); ~~~~~~~~~^~~~~~~~~~ ../pair_bop.cpp:3490:30: warning: ‘temp_ji’ may be used uninitialized in this function [-Wmaybe-uninitialized] else if(temp_kk==temp_ji&&setting==0) { ~~~~~~~^~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_harmonic.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_wolf.cpp ../bond_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::BondHarmonic::read_restart(FILE*)’: ../bond_harmonic.cpp:172:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_harmonic.cpp:173:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dump_xyz.cpp ../group.cpp: In member function ‘void LAMMPS_NS::Group::assign(int, char**)’: ../group.cpp:301:12: warning: ‘category’ may be used uninitialized in this function [-Wmaybe-uninitialized] else if (category == MOLECULE) tattribute = atom->molecule; ^~ ../pair_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulWolf::read_restart(FILE*)’: ../pair_coul_wolf.cpp:254:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulWolf::read_restart_settings(FILE*)’: ../pair_coul_wolf.cpp:278:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alf,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_wolf.cpp:279:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_wolf.cpp:280:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_wolf.cpp:281:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_wolf.cpp: In member function ‘virtual double LAMMPS_NS::PairCoulWolf::single(int, int, int, int, double, double, double, double&)’: ../pair_coul_wolf.cpp:318:33: warning: ‘erfcc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor * (erfcc-e_shift*r); ~~~~~~^~~~~~~~~~~ ../pair_coul_wolf.cpp:318:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor * (erfcc-e_shift*r); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_wolf.cpp:318:41: warning: ‘r’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor * (erfcc-e_shift*r); ~~~~~~~^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../manifold_plane_wiggle.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../mgpt_splinetab.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_temp_berendsen.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_ave_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../manifold_dumbbell.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lubricateU.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_event.cpp ../pair_lubricateU.cpp: In member function ‘virtual void LAMMPS_NS::PairLubricateU::read_restart(FILE*)’: ../pair_lubricateU.cpp:1917:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricateU.cpp:1921:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricateU.cpp:1922:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricateU.cpp: In member function ‘virtual void LAMMPS_NS::PairLubricateU::read_restart_settings(FILE*)’: ../pair_lubricateU.cpp:1954:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricateU.cpp:1955:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flaglog,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricateU.cpp:1956:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricateU.cpp:1957:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricateU.cpp:1958:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricateU.cpp:1959:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricateU.cpp:1960:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagHI,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricateU.cpp:1961:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagVF,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_ave_chunk.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_bonds_omp.cpp ../fix_ave_chunk.cpp: In member function ‘virtual void LAMMPS_NS::FixAveChunk::end_of_step()’: ../fix_ave_chunk.cpp:1058:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nve_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nve_body.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_spring_rg.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_momb.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_nsq_newtoff_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_morse_opt.cpp ../pair_momb.cpp: In member function ‘virtual void LAMMPS_NS::PairMomb::read_restart(FILE*)’: ../pair_momb.cpp:312:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_momb.cpp:316:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_momb.cpp:317:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_spec_atom.cpp ../pair_momb.cpp:318:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_momb.cpp:319:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_momb.cpp:320:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rr[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_momb.cpp:321:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_momb.cpp: In member function ‘virtual void LAMMPS_NS::PairMomb::read_restart_settings(FILE*)’: ../pair_momb.cpp:353:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_momb.cpp:354:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sscale,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_momb.cpp:355:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dscale,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_momb.cpp:356:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_momb.cpp:357:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../npair_half_nsq_newtoff_omp.cpp: In function ‘_ZN9LAMMPS_NS22NPairHalfNsqNewtoffOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_half_nsq_newtoff_omp.cpp:113:63: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_nsq_newtoff_omp.cpp:52:36: note: ‘iatom’ was declared here int i,j,n,itype,jtype,which,imol,iatom; ^~~~~ ../npair_half_nsq_newtoff_omp.cpp:112:33: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_nsq_newtoff_omp.cpp:53:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_half_nsq_newtoff_omp.cpp:113:46: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_nsq_newtoff_omp.cpp:52:31: note: ‘imol’ was declared here int i,j,n,itype,jtype,which,imol,iatom; ^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_nsq_newtoff_ghost_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_qbmsst.cpp ../npair_half_nsq_newtoff_ghost_omp.cpp: In function ‘_ZN9LAMMPS_NS27NPairHalfNsqNewtoffGhostOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_half_nsq_newtoff_ghost_omp.cpp:121:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_nsq_newtoff_ghost_omp.cpp:55:36: note: ‘iatom’ was declared here int i,j,n,itype,jtype,which,imol,iatom; ^~~~~ ../npair_half_nsq_newtoff_ghost_omp.cpp:120:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_nsq_newtoff_ghost_omp.cpp:56:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_half_nsq_newtoff_ghost_omp.cpp:121:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_nsq_newtoff_ghost_omp.cpp:55:31: note: ‘imol’ was declared here int i,j,n,itype,jtype,which,imol,iatom; ^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_edip_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_move.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nve_sphere.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_charmm_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_ehex.cpp ../fix_move.cpp: In member function ‘virtual void LAMMPS_NS::FixMove::initial_integrate(int)’: ../fix_move.cpp:844:61: warning: ‘dz’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (zvarstyle == EQUAL) x[i][2] = xoriginal[i][2] + dz; ~~~~~~~~~~~~~~~~^~~~ ../fix_move.cpp:814:61: warning: ‘dy’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (yvarstyle == EQUAL) x[i][1] = xoriginal[i][1] + dy; ~~~~~~~~~~~~~~~~^~~~ ../fix_move.cpp:784:61: warning: ‘dx’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (xvarstyle == EQUAL) x[i][0] = xoriginal[i][0] + dx; ~~~~~~~~~~~~~~~~^~~~ ../fix_move.cpp: In constructor ‘LAMMPS_NS::FixMove::FixMove(LAMMPS_NS::LAMMPS*, int, char**)’: ../fix_move.cpp:177:18: warning: ‘iarg’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (iarg+2 > narg) error->all(FLERR,"Illegal fix move command"); ~~~~~~~^~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nve_asphere.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_coul_msm.cpp ../fix_ehex.cpp: In member function ‘virtual void LAMMPS_NS::FixEHEX::init()’: ../fix_ehex.cpp:203:48: warning: ‘id_shake’ may be used uninitialized in this function [-Wmaybe-uninitialized] fshake = ((FixShake*) modify->fix[id_shake]); ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_ti_spring.cpp ../pair_lj_cut_coul_msm.cpp: In member function ‘virtual double LAMMPS_NS::PairLJCutCoulMSM::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_cut_coul_msm.cpp:476:37: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_cut_coul_msm.cpp:468:28: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ ../pair_lj_cut_coul_msm.cpp:468:40: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_msm.cpp:471:56: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_coul_msm.cpp:466:15: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*egamma; ~~~~~~~~^~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nvt.cpp ../pair_lj_cut_coul_msm.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulMSM::compute_outer(int, int)’: ../pair_lj_cut_coul_msm.cpp:367:64: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_coul_msm.cpp:390:25: warning: ‘fgamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcecoul = prefactor * fgamma; ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_msm.cpp:366:21: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*egamma; ~~~~~~^~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_msm.cpp:396:50: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = ptable[itable] + fraction*dptable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_msm.cpp:393:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = vtable[itable] + fraction*dvtable[itable]; ^ ../pair_lj_cut_coul_msm.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulMSM::compute(int, int)’: ../pair_lj_cut_coul_msm.cpp:209:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_coul_msm.cpp:204:21: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*egamma; ~~~~~~^~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_msm.cpp:213:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_msm.cpp:206:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_msm.cpp:206:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_flow_gauss.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_full_nsq_ghost_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../create_atoms.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_nonlinear_omp.cpp ../npair_full_nsq_ghost_omp.cpp: In function ‘_ZN9LAMMPS_NS20NPairFullNsqGhostOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_full_nsq_ghost_omp.cpp:113:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_full_nsq_ghost_omp.cpp:51:36: note: ‘iatom’ was declared here int i,j,n,itype,jtype,which,imol,iatom; ^~~~~ ../npair_full_nsq_ghost_omp.cpp:112:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_full_nsq_ghost_omp.cpp:52:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_full_nsq_ghost_omp.cpp:113:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_full_nsq_ghost_omp.cpp:51:31: note: ‘imol’ was declared here int i,j,n,itype,jtype,which,imol,iatom; ^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_smooth_linear_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../imbalance_neigh.cpp ../create_atoms.cpp: In member function ‘void LAMMPS_NS::CreateAtoms::add_random()’: ../create_atoms.cpp:657:55: warning: ‘boxhi’ may be used uninitialized in this function [-Wmaybe-uninitialized] coord[1] < boxlo[1] || coord[1] >= boxhi[1] || ~~~~~~~^ ../create_atoms.cpp:657:31: warning: ‘boxlo’ may be used uninitialized in this function [-Wmaybe-uninitialized] coord[1] < boxlo[1] || coord[1] >= boxhi[1] || ~~~~~~~^ ../create_atoms.cpp: In member function ‘void LAMMPS_NS::CreateAtoms::command(int, char**)’: ../create_atoms.cpp:229:46: warning: ‘molseed’ may be used uninitialized in this function [-Wmaybe-uninitialized] ranmol = new RanMars(lmp,molseed+comm->me); ^ ../create_atoms.cpp:120:18: warning: ‘iarg’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (iarg+3 > narg) error->all(FLERR,"Illegal create_atoms command"); ~~~~~~~^~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_charmmfsw_coul_charmmfsh.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_meso_rho_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../gridcomm.cpp ../pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart(FILE*)’: ../pair_lj_charmmfsw_coul_charmmfsh.cpp:437:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_charmmfsh.cpp:441:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_charmmfsh.cpp:442:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_charmmfsh.cpp:443:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_charmmfsh.cpp:444:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart_settings(FILE*)’: ../pair_lj_charmmfsw_coul_charmmfsh.cpp:474:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_charmmfsh.cpp:475:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_charmmfsh.cpp:476:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_charmmfsh.cpp:477:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_charmmfsh.cpp:478:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_bonds.cpp ../pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function ‘virtual double LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_charmmfsw_coul_charmmfsh.cpp:527:16: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] (r6inv - cut_lj6inv)*(r6inv - cut_lj6inv); ~~~~~~~^~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_charmmfsh.cpp:529:16: warning: ‘r3inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] (r3inv - cut_lj3inv)*(r3inv - cut_lj3inv);; ~~~~~~~^~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::compute(int, int)’: ../pair_lj_charmmfsw_coul_charmmfsh.cpp:189:24: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] (r6inv - cut_lj6inv)*(r6inv - cut_lj6inv); ~~~~~~~^~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_charmmfsh.cpp:99:33: warning: ‘jtype’ may be used uninitialized in this function [-Wmaybe-uninitialized] int i,j,ii,jj,inum,jnum,itype,jtype; ^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../replicate.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../ntopo_angle_partial.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nve.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_shield.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_nonbonded.cpp ../pair_coul_shield.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulShield::read_restart(FILE*)’: ../pair_coul_shield.cpp:305:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigmae[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_shield.cpp:306:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_shield.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulShield::read_restart_settings(FILE*)’: ../pair_coul_shield.cpp:332:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_shield.cpp:333:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_shield.cpp:334:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper_hybrid.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_temp_cs.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_tip4p_long_opt.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_store.cpp ../improper_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::ImproperHybrid::read_restart(FILE*)’: ../improper_hybrid.cpp:320:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_hybrid.cpp:329:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../improper_hybrid.cpp:332:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_respa_nsq_newtoff_omp.cpp ../pair_lj_cut_tip4p_long_opt.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int = 1; int = 1; int = 1; int = 1]’: ../pair_lj_cut_tip4p_long_opt.cpp:347:23: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:427:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_tip4p_long_opt.cpp:351:23: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int = 1; int = 1; int = 1; int = 0]’: ../pair_lj_cut_tip4p_long_opt.cpp:347:23: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_molecular.cpp ../pair_lj_cut_tip4p_long_opt.cpp:427:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_tip4p_long_opt.cpp:351:23: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int = 1; int = 1; int = 0; int = 1]’: ../pair_lj_cut_tip4p_long_opt.cpp:351:23: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:347:23: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:427:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../npair_half_respa_nsq_newtoff_omp.cpp: In function ‘_ZN9LAMMPS_NS27NPairHalfRespaNsqNewtoffOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_half_respa_nsq_newtoff_omp.cpp:145:63: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_nsq_newtoff_omp.cpp:56:47: note: ‘iatom’ was declared here int i,j,n,itype,jtype,n_inner,n_middle,imol,iatom; ^~~~~ ../npair_half_respa_nsq_newtoff_omp.cpp:144:33: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_respa_nsq_newtoff_omp.cpp:57:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_half_respa_nsq_newtoff_omp.cpp:145:46: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_nsq_newtoff_omp.cpp:56:42: note: ‘imol’ was declared here int i,j,n,itype,jtype,n_inner,n_middle,imol,iatom; ^~~~ ../npair_half_respa_nsq_newtoff_omp.cpp:161:51: warning: ‘n_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ~~~~~~~~^~ ../npair_half_respa_nsq_newtoff_omp.cpp:56:33: note: ‘n_middle’ was declared here int i,j,n,itype,jtype,n_inner,n_middle,imol,iatom; ^~~~~~~~ ../npair_half_respa_nsq_newtoff_omp.cpp:161:53: warning: ‘neighptr_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ^ ../npair_half_respa_nsq_newtoff_omp.cpp:59:34: note: ‘neighptr_middle’ was declared here int *neighptr,*neighptr_inner,*neighptr_middle; ^~~~~~~~~~~~~~~ In file included from ../neigh_list.h:18:0, from ../npair_half_respa_nsq_newtoff_omp.cpp:17: ../my_page.h:224:9: warning: ‘ipage_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] errorflag = 2; ^~~~~~~~~ ../npair_half_respa_nsq_newtoff_omp.cpp:98:16: note: ‘ipage_middle’ was declared here MyPage *ipage_middle; ^~~~~~~~~~~~ ../npair_half_respa_nsq_newtoff_omp.cpp:186:26: warning: ‘numneigh_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] numneigh_middle[i] = n_middle; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../npair_half_respa_nsq_newtoff_omp.cpp:85:22: note: ‘numneigh_middle’ was declared here int *ilist_middle,*numneigh_middle,**firstneigh_middle; ^~~~~~~~~~~~~~~ ../npair_half_respa_nsq_newtoff_omp.cpp:185:28: warning: ‘firstneigh_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] firstneigh_middle[i] = neighptr_middle; ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ../npair_half_respa_nsq_newtoff_omp.cpp:85:40: note: ‘firstneigh_middle’ was declared here int *ilist_middle,*numneigh_middle,**firstneigh_middle; ^~~~~~~~~~~~~~~~~ ../npair_half_respa_nsq_newtoff_omp.cpp:184:23: warning: ‘ilist_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] ilist_middle[i] = i; ~~~~~~~~~~~~~~~~^~~ ../npair_half_respa_nsq_newtoff_omp.cpp:85:8: note: ‘ilist_middle’ was declared here int *ilist_middle,*numneigh_middle,**firstneigh_middle; ^~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_opt.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int = 1; int = 1; int = 0; int = 0]’: ../pair_lj_cut_tip4p_long_opt.cpp:351:23: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:347:23: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:427:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_sdk_omp.cpp ../pair_lj_cut_tip4p_long_opt.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int = 1; int = 0; int = 0; int = 0]’: ../pair_lj_cut_tip4p_long_opt.cpp:406:23: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:351:23: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:347:23: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:410:23: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2][0] += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_sdk.cpp ../pair_lj_cut_tip4p_long_opt.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int = 0; int = 1; int = 1; int = 1]’: ../pair_lj_cut_tip4p_long_opt.cpp:427:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_tip4p_long_opt.cpp:351:23: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:347:23: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:435:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut_tip4p_long_opt.cpp:433:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_cut_tip4p_long_opt.cpp:433:15: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_cut_tip4p_long_opt.cpp:435:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut_tip4p_long_opt.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int = 0; int = 1; int = 1; int = 0]’: ../pair_lj_cut_tip4p_long_opt.cpp:427:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_tip4p_long_opt.cpp:351:23: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:347:23: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:435:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut_tip4p_long_opt.cpp:433:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_cut_tip4p_long_opt.cpp:433:15: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_cut_tip4p_long_opt.cpp:435:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; In file included from ../pair_lj_sdk_omp.cpp:24:0: ../lj_sdk_common.h:30:14: warning: ‘int LAMMPS_NS::LJSDKParms::find_lj_type(const char*, const char* const*)’ defined but not used [-Wunused-function] static int find_lj_type(const char *label, ^~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_opt.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int = 0; int = 1; int = 0; int = 1]’: ../pair_lj_cut_tip4p_long_opt.cpp:351:23: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:347:23: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:427:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../angle_sdk.cpp: In member function ‘virtual void LAMMPS_NS::AngleSDK::read_restart(FILE*)’: ../angle_sdk.cpp:336:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_sdk.cpp:337:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_sdk.cpp:338:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&repscale[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../angle_sdk.cpp:34:0: ../lj_sdk_common.h: At global scope: ../lj_sdk_common.h:30:14: warning: ‘int LAMMPS_NS::LJSDKParms::find_lj_type(const char*, const char* const*)’ defined but not used [-Wunused-function] static int find_lj_type(const char *label, ^~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_opt.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int = 0; int = 1; int = 0; int = 0]’: ../pair_lj_cut_tip4p_long_opt.cpp:351:23: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:347:23: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:427:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_tip4p_long_opt.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int = 0; int = 0; int = 0; int = 0]’: ../pair_lj_cut_tip4p_long_opt.cpp:406:23: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:351:23: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:347:23: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fHx; ../pair_lj_cut_tip4p_long_opt.cpp:410:23: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2][0] += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../manifold_spine.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_contact_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../region_intersect.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_langevin.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_angmom_chunk.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../integrate.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_hybrid.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_full_bin.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_size_nsq_newton_omp.cpp ../angle_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::AngleHybrid::read_restart(FILE*)’: ../angle_hybrid.cpp:338:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_hybrid.cpp:347:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../angle_hybrid.cpp:350:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../npair_full_bin.cpp: In member function ‘virtual void LAMMPS_NS::NPairFullBin::build(LAMMPS_NS::NeighList*)’: ../npair_full_bin.cpp:102:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_full_bin.cpp:103:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_full_bin.cpp:103:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_cna_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_slice.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_dilatation_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_gauss_cut.cpp ../compute_dilatation_atom.cpp: In member function ‘virtual void LAMMPS_NS::ComputeDilatationAtom::compute_peratom()’: ../compute_dilatation_atom.cpp:116:52: warning: ‘theta’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (mask[i] & groupbit) dilatation[i] = theta[i]; ~~~~~~~^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper_class2_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_size_bin_newtoff_omp.cpp ../pair_gauss_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairGaussCut::read_restart(FILE*)’: ../pair_gauss_cut.cpp:309:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gauss_cut.cpp:313:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&hgauss[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gauss_cut.cpp:314:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rmh[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gauss_cut.cpp:315:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigmah[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gauss_cut.cpp:316:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gauss_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairGaussCut::read_restart_settings(FILE*)’: ../pair_gauss_cut.cpp:345:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gauss_cut.cpp:346:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gauss_cut.cpp:347:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid_npt_small.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_smd.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_store_state.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_smooth.cpp ../pair_lj_smooth.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSmooth::read_restart(FILE*)’: ../pair_lj_smooth.cpp:356:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_smooth.cpp:360:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_smooth.cpp:361:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_smooth.cpp:362:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_smooth.cpp:363:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_smooth.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSmooth::read_restart_settings(FILE*)’: ../pair_lj_smooth.cpp:393:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_smooth.cpp:394:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_smooth.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_smooth.cpp:396:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../region.cpp ../pair_lj_smooth.cpp: In member function ‘virtual double LAMMPS_NS::PairLJSmooth::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_smooth.cpp:454:30: warning: ‘tsq’ may be used uninitialized in this function [-Wmaybe-uninitialized] ljsw4[itype][jtype]*tsq*tsq/4.0 - offset[itype][jtype]; ~~~~~~~~~~~~~~~~~~~~~~~^~~~ ../pair_lj_smooth.cpp:453:60: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] ljsw2[itype][jtype]*tsq/2.0 - ljsw3[itype][jtype]*tsq*t/3.0 - ~~~~~~~~~~~~~~~~~~~~~~~^~ ../pair_lj_smooth.cpp:449:19: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] philj = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]) - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_smooth.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSmooth::compute(int, int)’: ../pair_lj_smooth.cpp:144:38: warning: ‘tsq’ may be used uninitialized in this function [-Wmaybe-uninitialized] ljsw4[itype][jtype]*tsq*tsq/4.0 - offset[itype][jtype]; ~~~~~~~~~~~~~~~~~~~~~~~^~~~ ../pair_lj_smooth.cpp:143:68: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] ljsw2[itype][jtype]*tsq/2.0 - ljsw3[itype][jtype]*tsq*t/3.0 - ~~~~~~~~~~~~~~~~~~~~~~~^~ ../pair_lj_smooth.cpp:139:27: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv * (lj3[itype][jtype]*r6inv - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ lj4[itype][jtype]) - offset[itype][jtype]; ~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_soft.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_ilp_graphene_hbn.cpp ../region.cpp: In member function ‘int LAMMPS_NS::Region::surface(double, double, double, double)’: ../region.cpp:192:34: warning: ‘xorig[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] contact[i].delz = xorig[2] - zs; ~~~~~~~~~^~~~ ../region.cpp:191:34: warning: ‘xorig[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] contact[i].dely = xorig[1] - ys; ~~~~~~~~~^~~~ ../region.cpp:190:34: warning: ‘xorig[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] contact[i].delx = xorig[0] - xs; ~~~~~~~~~^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../imbalance_time.cpp ../pair_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairSoft::read_restart(FILE*)’: ../pair_soft.cpp:250:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_soft.cpp:254:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&prefactor[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_soft.cpp:255:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairSoft::read_restart_settings(FILE*)’: ../pair_soft.cpp:280:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_soft.cpp:281:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../ntopo_improper_partial.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_sdk.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_fourier.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_qtb.cpp ../pair_lj_sdk.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSDK::read_restart(FILE*)’: ../pair_lj_sdk.cpp:384:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk.cpp:388:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lj_type[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk.cpp:389:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk.cpp:390:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk.cpp:391:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSDK::read_restart_settings(FILE*)’: ../pair_lj_sdk.cpp:421:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk.cpp:422:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk.cpp:423:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk.cpp:424:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_fourier.cpp: In member function ‘virtual void LAMMPS_NS::AngleFourier::read_restart(FILE*)’: ../angle_fourier.cpp:235:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_fourier.cpp:236:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_fourier.cpp:237:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_fourier.cpp:238:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_bin_newton.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_tersoff_mod_c.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid_nph_small.cpp ../npair_half_bin_newton.cpp: In member function ‘virtual void LAMMPS_NS::NPairHalfBinNewton::build(LAMMPS_NS::NeighList*)’: ../npair_half_bin_newton.cpp:138:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_bin_newton.cpp:139:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_bin_newton.cpp:139:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_drude.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../write_restart.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nve_asphere_noforce.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_ackland_atom.cpp ../fix_nve_asphere_noforce.cpp: In member function ‘virtual void LAMMPS_NS::FixNVEAsphereNoforce::initial_integrate(int)’: ../fix_nve_asphere_noforce.cpp:94:33: warning: ‘bonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = bonus[ellipsoid[i]].shape; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_hybrid.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_temp_csvr.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../write_coeff.cpp ../dihedral_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::DihedralHybrid::read_restart(FILE*)’: ../dihedral_hybrid.cpp:323:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_hybrid.cpp:332:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../dihedral_hybrid.cpp:335:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../temper.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_cosine_periodic.cpp ../write_coeff.cpp: In member function ‘void LAMMPS_NS::WriteCoeff::command(int, char**)’: ../write_coeff.cpp:97:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); // coeff ~~~~~^~~~~~~~~~~~~ ../write_coeff.cpp:101:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); ~~~~~^~~~~~~~~~~~~ ../write_coeff.cpp:104:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); ~~~~~^~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_charmm_coul_charmm_implicit.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../min_cg.cpp ../angle_cosine_periodic.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosinePeriodic::read_restart(FILE*)’: ../angle_cosine_periodic.cpp:250:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_cosine_periodic.cpp:251:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b[1],sizeof(int),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_cosine_periodic.cpp:252:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_charmm_implicit.cpp: In member function ‘virtual double LAMMPS_NS::PairLJCharmmCoulCharmmImplicit::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_charmm_coul_charmm_implicit.cpp:201:37: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]); ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_charmm_coul_charmm_implicit.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulCharmmImplicit::compute(int, int)’: ../pair_lj_charmm_coul_charmm_implicit.cpp:134:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]); ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_charmm_coul_charmm_implicit.cpp:134:44: warning: ‘jtype’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]); ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_cnp_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_ke.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper_class2.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_size_bin_newtoff.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_npt_body.cpp ../improper_class2.cpp: In member function ‘virtual void LAMMPS_NS::ImproperClass2::read_restart(FILE*)’: ../improper_class2.cpp:609:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_class2.cpp:610:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&chi0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_class2.cpp:612:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa_k1[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_class2.cpp:613:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa_k2[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_class2.cpp:614:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa_k3[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_class2.cpp:615:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa_theta0_1[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_class2.cpp:616:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa_theta0_2[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_class2.cpp:617:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa_theta0_3[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pppm_stagger.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_full_nsq.cpp ../improper_class2.cpp: In member function ‘void LAMMPS_NS::ImproperClass2::angleangle(int, int)’: ../improper_class2.cpp:822:15: warning: ‘eimproper’ may be used uninitialized in this function [-Wmaybe-uninitialized] ev_tally(i1,i2,i3,i4,nlocal,newton_bond,eimproper, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fabcd[0],fabcd[2],fabcd[3], ~~~~~~~~~~~~~~~~~~~~~~~~~~~ delxAB,delyAB,delzAB,delxBC,delyBC,delzBC, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ delxBD-delxBC,delyBD-delyBC,delzBD-delzBC); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_class2_omp.cpp ../npair_full_nsq.cpp: In member function ‘virtual void LAMMPS_NS::NPairFullNsq::build(LAMMPS_NS::NeighList*)’: ../npair_full_nsq.cpp:103:33: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_full_nsq.cpp:104:63: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_full_nsq.cpp:104:46: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_full_nsq.cpp:89:37: warning: ‘bitmask’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (includegroup && !(mask[j] & bitmask)) continue; ~~~~~~~~~^~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nbin_standard.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../kspace.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nph_eff.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_stress_tally.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper_ring_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nve_manifold_rattle.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_charmm_coul_msm_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_nharmonic.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid_nph.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid_omp.cpp ../dihedral_nharmonic.cpp: In member function ‘virtual void LAMMPS_NS::DihedralNHarmonic::read_restart(FILE*)’: ../dihedral_nharmonic.cpp:322:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_nharmonic.cpp:332:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(a[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_adapt.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_fourier_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_displace_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_yukawa_colloid_omp.cpp ../fix_rigid_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidOMP::set_xv_thr() [with int = 1; int = 1]’: ../fix_rigid_omp.cpp:497:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_omp.cpp:492:25: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] lbonus[line[i]].theta = theta; ../fix_rigid_omp.cpp:476:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../msm_omp.cpp ../fix_rigid_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidOMP::set_xv_thr() [with int = 1; int = 0]’: ../fix_rigid_omp.cpp:497:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_omp.cpp:492:25: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] lbonus[line[i]].theta = theta; ../fix_rigid_omp.cpp:476:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ../fix_rigid_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidOMP::set_xv_thr() [with int = 0; int = 1]’: ../fix_rigid_omp.cpp:497:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_omp.cpp:492:25: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] lbonus[line[i]].theta = theta; ../fix_rigid_omp.cpp:476:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_multi_newton.cpp ../fix_rigid_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidOMP::set_xv_thr() [with int = 0; int = 0]’: ../fix_rigid_omp.cpp:497:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_omp.cpp:492:25: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] lbonus[line[i]].theta = theta; ../fix_rigid_omp.cpp:476:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ../fix_rigid_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidOMP::set_v_thr() [with int = 1; int = 1]’: ../fix_rigid_omp.cpp:674:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_omp.cpp:661:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ../fix_rigid_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidOMP::set_v_thr() [with int = 0; int = 1]’: ../fix_rigid_omp.cpp:674:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_omp.cpp:661:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ../fix_rigid_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidOMP::set_v_thr() [with int = 0; int = 0]’: ../fix_rigid_omp.cpp:674:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_omp.cpp:661:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_dpd_tstat_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_atomic.cpp ../npair_half_multi_newton.cpp: In member function ‘virtual void LAMMPS_NS::NPairHalfMultiNewton::build(LAMMPS_NS::NeighList*)’: ../npair_half_multi_newton.cpp:146:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_multi_newton.cpp:147:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_multi_newton.cpp:147:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_brownian_poly.cpp ../pair_brownian_poly.cpp: In member function ‘virtual void LAMMPS_NS::PairBrownianPoly::compute(int, int)’: ../pair_brownian_poly.cpp:83:26: warning: ‘a_pu’ may be used uninitialized in this function [-Wmaybe-uninitialized] double xl[3],a_sq,a_sh,a_pu,Fbmag; ^~~~ ../pair_brownian_poly.cpp:83:21: warning: ‘a_sh’ may be used uninitialized in this function [-Wmaybe-uninitialized] double xl[3],a_sq,a_sh,a_pu,Fbmag; ^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_restrain.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../manifold_cylinder.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_tersoff_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_helix.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_bin_newtoff_ghost_omp.cpp ../dihedral_helix.cpp: In member function ‘virtual void LAMMPS_NS::DihedralHelix::read_restart(FILE*)’: ../dihedral_helix.cpp:325:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aphi[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_helix.cpp:326:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bphi[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_helix.cpp:327:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cphi[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../npair_half_bin_newtoff_ghost_omp.cpp: In function ‘_ZN9LAMMPS_NS27NPairHalfBinNewtoffGhostOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_half_bin_newtoff_ghost_omp.cpp:126:67: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_bin_newtoff_ghost_omp.cpp:54:43: note: ‘iatom’ was declared here int i,j,k,n,itype,jtype,ibin,which,imol,iatom; ^~~~~ ../npair_half_bin_newtoff_ghost_omp.cpp:125:37: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_bin_newtoff_ghost_omp.cpp:55:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_half_bin_newtoff_ghost_omp.cpp:126:50: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_bin_newtoff_ghost_omp.cpp:54:38: note: ‘imol’ was declared here int i,j,k,n,itype,jtype,ibin,which,imol,iatom; ^~~~ ../fix_restrain.cpp: In member function ‘void LAMMPS_NS::FixRestrain::restrain_dihedral(int)’: ../fix_restrain.cpp:566:33: warning: ‘ddf1’ may be used uninitialized in this function [-Wmaybe-uninitialized] df1 = df1*cos_target[m] - ddf1*sin_target[m]; ~~~~^~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_multi_harmonic.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_reduce_region.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dump_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_hbond_dreiding_morse_omp.cpp ../dihedral_multi_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::DihedralMultiHarmonic::read_restart(FILE*)’: ../dihedral_multi_harmonic.cpp:320:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_multi_harmonic.cpp:321:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_multi_harmonic.cpp:322:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_multi_harmonic.cpp:323:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a4[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_multi_harmonic.cpp:324:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a5[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_zero.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_charmm_coul_long_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_mgpt.cpp ../bond_zero.cpp: In member function ‘virtual void LAMMPS_NS::BondZero::read_restart(FILE*)’: ../bond_zero.cpp:131:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_buck_coul_msm.cpp ../pair_mgpt.cpp: In member function ‘void LAMMPS_NS::PairMGPT::compute_x(const int*, const int* const*, double*, double*, double*, double*, int, int)’: ../pair_mgpt.cpp:594:24: warning: unused variable ‘mx’ [-Wunused-variable] int i,j,k,m,ix,jx,kx,mx,itag,jtag,p; ^~ ../pair_mgpt.cpp:594:27: warning: unused variable ‘itag’ [-Wunused-variable] int i,j,k,m,ix,jx,kx,mx,itag,jtag,p; ^~~~ ../pair_mgpt.cpp:594:32: warning: unused variable ‘jtag’ [-Wunused-variable] int i,j,k,m,ix,jx,kx,mx,itag,jtag,p; ^~~~ ../pair_mgpt.cpp:599:10: warning: unused variable ‘nbc’ [-Wunused-variable] double nbc = 0.0,tbl = 0.0,tbm = 0.0; ^~~ ../pair_mgpt.cpp:599:20: warning: unused variable ‘tbl’ [-Wunused-variable] double nbc = 0.0,tbl = 0.0,tbm = 0.0; ^~~ ../pair_mgpt.cpp:599:30: warning: unused variable ‘tbm’ [-Wunused-variable] double nbc = 0.0,tbl = 0.0,tbm = 0.0; ^~~ ../pair_mgpt.cpp:600:13: warning: unused variable ‘lmax_local’ [-Wunused-variable] const int lmax_local = lmax; ^~~~~~~~~~ ../pair_mgpt.cpp:609:10: warning: variable ‘t0’ set but not used [-Wunused-but-set-variable] double t0,t1; ^~ ../pair_mgpt.cpp:609:13: warning: variable ‘t1’ set but not used [-Wunused-but-set-variable] double t0,t1; ^~ ../pair_mgpt.cpp:618:18: warning: unused variable ‘tsort’ [-Wunused-variable] double tx0,tx1,tsort = 0.0,tpair = 0.0,tlookup = 0.0; ^~~~~ ../pair_mgpt.cpp:618:42: warning: unused variable ‘tlookup’ [-Wunused-variable] double tx0,tx1,tsort = 0.0,tpair = 0.0,tlookup = 0.0; ^~~~~~~ ../pair_mgpt.cpp:620:10: warning: unused variable ‘ntsort’ [-Wunused-variable] double ntsort = 0.0,ntpair = 0.0,ntlookup = 0.0; ^~~~~~ ../pair_mgpt.cpp:620:36: warning: unused variable ‘ntlookup’ [-Wunused-variable] double ntsort = 0.0,ntpair = 0.0,ntlookup = 0.0; ^~~~~~~~ ../pair_mgpt.cpp: In member function ‘virtual void LAMMPS_NS::PairMGPT::coeff(int, char**)’: ../pair_mgpt.cpp:1839:9: warning: variable ‘volpres_tag’ set but not used [-Wunused-but-set-variable] int volpres_tag = 0,precision_tag = 0,nbody_tag = 0; ^~~~~~~~~~~ ../pair_mgpt.cpp:1839:25: warning: variable ‘precision_tag’ set but not used [-Wunused-but-set-variable] int volpres_tag = 0,precision_tag = 0,nbody_tag = 0; ^~~~~~~~~~~~~ ../pair_mgpt.cpp: In member function ‘void LAMMPS_NS::PairMGPT::hamltn_5_raw(double, double, double, double (*)[8], double (*)[8], double (*)[8], double (*)[8], double*)’: ../pair_mgpt.cpp:2150:14: warning: operation on ‘(*(M + 64))[1]’ may be undefined [-Wsequence-point] M [j][i] = M[i][j] = fl *tmp; \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2254:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(1,1); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2151:14: warning: operation on ‘(*(Mx + 64))[1]’ may be undefined [-Wsequence-point] Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2254:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(1,1); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2152:14: warning: operation on ‘(*(My + 64))[1]’ may be undefined [-Wsequence-point] My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2254:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(1,1); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2153:14: warning: operation on ‘(*(Mz + 64))[1]’ may be undefined [-Wsequence-point] Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2254:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(1,1); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2150:14: warning: operation on ‘(*(M + 128))[2]’ may be undefined [-Wsequence-point] M [j][i] = M[i][j] = fl *tmp; \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2289:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(2,2); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2151:14: warning: operation on ‘(*(Mx + 128))[2]’ may be undefined [-Wsequence-point] Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2289:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(2,2); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2152:14: warning: operation on ‘(*(My + 128))[2]’ may be undefined [-Wsequence-point] My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2289:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(2,2); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2153:14: warning: operation on ‘(*(Mz + 128))[2]’ may be undefined [-Wsequence-point] Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2289:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(2,2); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2150:14: warning: operation on ‘(*(M + 192))[3]’ may be undefined [-Wsequence-point] M [j][i] = M[i][j] = fl *tmp; \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2317:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(3,3); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2151:14: warning: operation on ‘(*(Mx + 192))[3]’ may be undefined [-Wsequence-point] Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2317:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(3,3); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2152:14: warning: operation on ‘(*(My + 192))[3]’ may be undefined [-Wsequence-point] My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2317:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(3,3); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2153:14: warning: operation on ‘(*(Mz + 192))[3]’ may be undefined [-Wsequence-point] Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2317:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(3,3); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2150:14: warning: operation on ‘(*(M + 256))[4]’ may be undefined [-Wsequence-point] M [j][i] = M[i][j] = fl *tmp; \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2338:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(4,4); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2151:14: warning: operation on ‘(*(Mx + 256))[4]’ may be undefined [-Wsequence-point] Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2338:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(4,4); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2152:14: warning: operation on ‘(*(My + 256))[4]’ may be undefined [-Wsequence-point] My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2338:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(4,4); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2153:14: warning: operation on ‘(*(Mz + 256))[4]’ may be undefined [-Wsequence-point] Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2338:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(4,4); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2150:14: warning: operation on ‘(*(M + 320))[5]’ may be undefined [-Wsequence-point] M [j][i] = M[i][j] = fl *tmp; \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2352:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(5,5); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2151:14: warning: operation on ‘(*(Mx + 320))[5]’ may be undefined [-Wsequence-point] Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2352:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(5,5); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2152:14: warning: operation on ‘(*(My + 320))[5]’ may be undefined [-Wsequence-point] My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2352:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(5,5); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2153:14: warning: operation on ‘(*(Mz + 320))[5]’ may be undefined [-Wsequence-point] Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2352:3: note: in expansion of macro ‘MAKE_ELEMENT_5’ MAKE_ELEMENT_5(5,5); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp: In member function ‘void LAMMPS_NS::PairMGPT::hamltn_7_raw(double, double, double, double (*)[8], double (*)[8], double (*)[8], double (*)[8], double*)’: ../pair_mgpt.cpp:2169:14: warning: operation on ‘(*(M + 64))[1]’ may be undefined [-Wsequence-point] M [j][i] = M[i][j] = fl *tmp; \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2474:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(1,1); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2170:14: warning: operation on ‘(*(Mx + 64))[1]’ may be undefined [-Wsequence-point] Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2474:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(1,1); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2171:14: warning: operation on ‘(*(My + 64))[1]’ may be undefined [-Wsequence-point] My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2474:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(1,1); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2172:14: warning: operation on ‘(*(Mz + 64))[1]’ may be undefined [-Wsequence-point] Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2474:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(1,1); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2169:14: warning: operation on ‘(*(M + 128))[2]’ may be undefined [-Wsequence-point] M [j][i] = M[i][j] = fl *tmp; \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2579:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(2,2); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2170:14: warning: operation on ‘(*(Mx + 128))[2]’ may be undefined [-Wsequence-point] Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2579:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(2,2); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2171:14: warning: operation on ‘(*(My + 128))[2]’ may be undefined [-Wsequence-point] My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2579:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(2,2); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2172:14: warning: operation on ‘(*(Mz + 128))[2]’ may be undefined [-Wsequence-point] Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2579:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(2,2); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2169:14: warning: operation on ‘(*(M + 192))[3]’ may be undefined [-Wsequence-point] M [j][i] = M[i][j] = fl *tmp; \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2669:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(3,3); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2170:14: warning: operation on ‘(*(Mx + 192))[3]’ may be undefined [-Wsequence-point] Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2669:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(3,3); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2171:14: warning: operation on ‘(*(My + 192))[3]’ may be undefined [-Wsequence-point] My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2669:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(3,3); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2172:14: warning: operation on ‘(*(Mz + 192))[3]’ may be undefined [-Wsequence-point] Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2669:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(3,3); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2169:14: warning: operation on ‘(*(M + 256))[4]’ may be undefined [-Wsequence-point] M [j][i] = M[i][j] = fl *tmp; \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2744:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(4,4); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2170:14: warning: operation on ‘(*(Mx + 256))[4]’ may be undefined [-Wsequence-point] Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2744:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(4,4); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2171:14: warning: operation on ‘(*(My + 256))[4]’ may be undefined [-Wsequence-point] My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2744:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(4,4); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2172:14: warning: operation on ‘(*(Mz + 256))[4]’ may be undefined [-Wsequence-point] Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2744:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(4,4); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2169:14: warning: operation on ‘(*(M + 320))[5]’ may be undefined [-Wsequence-point] M [j][i] = M[i][j] = fl *tmp; \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2804:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(5,5); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2170:14: warning: operation on ‘(*(Mx + 320))[5]’ may be undefined [-Wsequence-point] Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2804:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(5,5); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2171:14: warning: operation on ‘(*(My + 320))[5]’ may be undefined [-Wsequence-point] My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2804:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(5,5); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2172:14: warning: operation on ‘(*(Mz + 320))[5]’ may be undefined [-Wsequence-point] Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2804:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(5,5); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2169:14: warning: operation on ‘(*(M + 384))[6]’ may be undefined [-Wsequence-point] M [j][i] = M[i][j] = fl *tmp; \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2848:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(6,6); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2170:14: warning: operation on ‘(*(Mx + 384))[6]’ may be undefined [-Wsequence-point] Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2848:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(6,6); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2171:14: warning: operation on ‘(*(My + 384))[6]’ may be undefined [-Wsequence-point] My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2848:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(6,6); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2172:14: warning: operation on ‘(*(Mz + 384))[6]’ may be undefined [-Wsequence-point] Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2848:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(6,6); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2169:14: warning: operation on ‘(*(M + 448))[7]’ may be undefined [-Wsequence-point] M [j][i] = M[i][j] = fl *tmp; \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2878:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(7,7); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2170:14: warning: operation on ‘(*(Mx + 448))[7]’ may be undefined [-Wsequence-point] Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2878:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(7,7); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2171:14: warning: operation on ‘(*(My + 448))[7]’ may be undefined [-Wsequence-point] My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2878:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(7,7); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp:2172:14: warning: operation on ‘(*(Mz + 448))[7]’ may be undefined [-Wsequence-point] Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum); \ ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mgpt.cpp:2878:3: note: in expansion of macro ‘MAKE_ELEMENT_7’ MAKE_ELEMENT_7(7,7); ^~~~~~~~~~~~~~ ../pair_mgpt.cpp: At global scope: ../pair_mgpt.cpp:576:13: warning: ‘void tr_count(const double*, const double*, double*, const double*, double*, const double*, double*)’ defined but not used [-Wunused-function] static void tr_count(const double * restrict A, ^~~~~~~~ ../pair_buck_coul_msm.cpp: In member function ‘virtual double LAMMPS_NS::PairBuckCoulMSM::single(int, int, int, int, double, double, double, double&)’: ../pair_buck_coul_msm.cpp:243:30: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ~~~~~~~~~~~~~~~^~~~~ ../pair_buck_coul_msm.cpp:243:53: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ~~~~~~~~~~~~~~~^~~~~~ ../pair_buck_coul_msm.cpp:238:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*egamma; ~~~~~~~~^~~~~~~~~~~~~~~~~~ ../pair_buck_coul_msm.cpp:238:13: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nh_sphere_omp.cpp ../pair_buck_coul_msm.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckCoulMSM::compute(int, int)’: ../pair_buck_coul_msm.cpp:185:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ~~~~~~~~~~~~~~~^~~~~ ../pair_buck_coul_msm.cpp:182:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_buck_coul_msm.cpp:181:19: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*egamma; ~~~~~~^~~~~~~~~~~~~~~~~~ ../pair_buck_coul_msm.cpp:185:59: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ~~~~~~~~~~~~~~~^~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_peri.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_dipole_cut.cpp ../pair_lj_cut_dipole_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutDipoleCut::read_restart(FILE*)’: ../pair_lj_cut_dipole_cut.cpp:441:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_dipole_cut.cpp:445:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_dipole_cut.cpp:446:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_dipole_cut.cpp:447:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_dipole_cut.cpp:448:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_dipole_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutDipoleCut::read_restart_settings(FILE*)’: ../pair_lj_cut_dipole_cut.cpp:477:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_dipole_cut.cpp:478:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_dipole_cut.cpp:479:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_dipole_cut.cpp:480:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_cosine.cpp ../pair_lj_cut_dipole_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutDipoleCut::compute(int, int)’: ../pair_lj_cut_dipole_cut.cpp:240:34: warning: ‘pjdotr’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += qtmp*r3inv*pjdotr; ~~~~~~~~~~^~~~~~~ ../pair_lj_cut_dipole_cut.cpp:238:35: warning: ‘pidotr’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += -q[j]*r3inv*pidotr; ~~~~~~~~~~~^~~~~~~ ../pair_lj_cut_dipole_cut.cpp:236:29: warning: ‘pdotp’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr; ~~~~~^~~~~~ ../pair_lj_cut_dipole_cut.cpp:236:41: warning: ‘r5inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr; ~~~^~~~~~ ../pair_lj_cut_dipole_cut.cpp:238:29: warning: ‘r3inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += -q[j]*r3inv*pidotr; ~~~~~^~~~~~ ../pair_lj_cut_dipole_cut.cpp:245:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~~~~~~~~~~~~~^~~~~~ ../angle_cosine.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosine::read_restart(FILE*)’: ../angle_cosine.cpp:197:27: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (comm->me == 0) fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_sph_heatconduction.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_sph_idealgas.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_thole_long_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_zero.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_coul_msm_omp.cpp ../pair_lj_cut_thole_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_cut_thole_long_omp.cpp:246:50: warning: ‘di_closest’ may be used uninitialized in this function [-Wmaybe-uninitialized] drudetype[type[j]] != NOPOL_TYPE && j != di_closest){ ../pair_lj_cut_thole_long_omp.cpp:247:33: warning: ‘dcoul’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += factor_e * dcoul; ~~~~~~~~~^~~~~~~ ../pair_lj_cut_thole_long_omp.cpp:210:30: warning: ‘dqi’ may be used uninitialized in this function [-Wmaybe-uninitialized] dcoul = qqrd2e * dqi * dqj / r; ~~~~~~~^~~~~ ../pair_lj_cut_thole_long_omp.cpp:242:25: warning: ‘qj’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = qi*qj * table; ~~^~~ ../pair_lj_cut_thole_long_omp.cpp:247:33: warning: ‘factor_e’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += factor_e * dcoul; ~~~~~~~~~^~~~~~~ ../pair_lj_cut_thole_long_omp.cpp:239:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_cut_thole_long_omp.cpp:244:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_thole_long_omp.cpp:241:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut_thole_long_omp.cpp:252:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3i[jtype]*r6inv-lj4i[jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long_omp.cpp:241:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut_thole_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_cut_thole_long_omp.cpp:246:50: warning: ‘di_closest’ may be used uninitialized in this function [-Wmaybe-uninitialized] drudetype[type[j]] != NOPOL_TYPE && j != di_closest){ ../pair_lj_cut_thole_long_omp.cpp:247:33: warning: ‘dcoul’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += factor_e * dcoul; ~~~~~~~~~^~~~~~~ ../pair_lj_cut_thole_long_omp.cpp:210:30: warning: ‘dqi’ may be used uninitialized in this function [-Wmaybe-uninitialized] dcoul = qqrd2e * dqi * dqj / r; ~~~~~~~^~~~~ ../pair_lj_cut_thole_long_omp.cpp:242:25: warning: ‘qj’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = qi*qj * table; ~~^~~ ../pair_lj_cut_thole_long_omp.cpp:247:33: warning: ‘factor_e’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += factor_e * dcoul; ~~~~~~~~~^~~~~~~ ../pair_lj_cut_thole_long_omp.cpp:239:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_cut_thole_long_omp.cpp:244:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_thole_long_omp.cpp:241:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut_thole_long_omp.cpp:252:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3i[jtype]*r6inv-lj4i[jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long_omp.cpp:241:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut_thole_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1]’: ../pair_lj_cut_thole_long_omp.cpp:203:13: warning: ‘di_closest’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (j != di_closest){ ^~ ../pair_lj_cut_thole_long_omp.cpp:210:30: warning: ‘dqi’ may be used uninitialized in this function [-Wmaybe-uninitialized] dcoul = qqrd2e * dqi * dqj / r; ~~~~~~~^~~~~ ../pair_lj_cut_thole_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0]’: ../pair_lj_cut_thole_long_omp.cpp:203:13: warning: ‘di_closest’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (j != di_closest){ ^~ ../pair_lj_cut_thole_long_omp.cpp:210:30: warning: ‘dqi’ may be used uninitialized in this function [-Wmaybe-uninitialized] dcoul = qqrd2e * dqi * dqj / r; ~~~~~~~^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_coul_debye_omp.cpp ../pair_lj_cut_thole_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1]’: ../pair_lj_cut_thole_long_omp.cpp:203:13: warning: ‘di_closest’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (j != di_closest){ ^~ ../pair_lj_cut_thole_long_omp.cpp:210:30: warning: ‘dqi’ may be used uninitialized in this function [-Wmaybe-uninitialized] dcoul = qqrd2e * dqi * dqj / r; ~~~~~~~^~~~~ ../pair_lj_cut_thole_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0]’: ../pair_lj_cut_thole_long_omp.cpp:203:13: warning: ‘di_closest’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (j != di_closest){ ^~ ../pair_lj_cut_thole_long_omp.cpp:210:30: warning: ‘dqi’ may be used uninitialized in this function [-Wmaybe-uninitialized] dcoul = qqrd2e * dqi * dqj / r; ~~~~~~~^~~~~ ../pair_lj_cut_coul_msm_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_cut_coul_msm_omp.cpp:188:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_coul_msm_omp.cpp:183:15: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*egamma; ^~~~~ ../pair_lj_cut_coul_msm_omp.cpp:192:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ../pair_lj_cut_coul_msm_omp.cpp:185:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut_coul_msm_omp.cpp:185:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut_coul_msm_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_cut_coul_msm_omp.cpp:188:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_coul_msm_omp.cpp:183:15: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*egamma; ^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_eam_fs_opt.cpp ../pair_lj_cut_coul_msm_omp.cpp:192:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_msm_omp.cpp:185:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut_coul_msm_omp.cpp:185:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid.cpp ../pair_lj_cut_coul_debye_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulDebyeOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_cut_coul_debye_omp.cpp:159:13: warning: ‘screening’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening; ^~~~~ ../pair_lj_cut_coul_debye_omp.cpp:159:54: warning: ‘rinv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_cut_coul_debye_omp.cpp:162:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_class2_omp.cpp ../pair_lj_cut_coul_debye_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulDebyeOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_cut_coul_debye_omp.cpp:159:13: warning: ‘screening’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening; ^~~~~ ../pair_lj_cut_coul_debye_omp.cpp:159:54: warning: ‘rinv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_cut_coul_debye_omp.cpp:162:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../fix_rigid.cpp: In member function ‘virtual void LAMMPS_NS::FixRigid::init()’: ../fix_rigid.cpp:733:78: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘char*’ [-Wformat=] sprintf(str,"Fix %d alters forces after fix rigid",modify->fix[i]->id); ~~~~~~~~~~~~~~~~~~^ ../fix_rigid.cpp: In member function ‘void LAMMPS_NS::FixRigid::compute_forces_and_torques()’: ../fix_rigid.cpp:1033:10: warning: unused variable ‘dtfm’ [-Wunused-variable] double dtfm; ^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_tool_box.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_wall_lj126.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_born_coul_wolf_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_yukawa_colloid.cpp ../fix_rigid.cpp: In constructor ‘LAMMPS_NS::FixRigid::FixRigid(LAMMPS_NS::LAMMPS*, int, char**)’: ../fix_rigid.cpp:397:23: warning: ‘zflag’ may be used uninitialized in this function [-Wmaybe-uninitialized] tflag[m-1][2] = zflag; ~~~~~~~~~~~~~~^~~~~~~ ../fix_rigid.cpp:390:60: warning: ‘yflag’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (domain->dimension == 2 && (xflag == 1.0 || yflag == 1.0)) ~~~~~~^~~~~~ ../fix_rigid.cpp:390:44: warning: ‘xflag’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (domain->dimension == 2 && (xflag == 1.0 || yflag == 1.0)) ~~~~~~^~~~~~ ../fix_rigid.cpp:359:34: warning: ‘zflag’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (domain->dimension == 2 && zflag == 1.0) ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ../fix_rigid.cpp:365:23: warning: ‘yflag’ may be used uninitialized in this function [-Wmaybe-uninitialized] fflag[m-1][1] = yflag; ~~~~~~~~~~~~~~^~~~~~~ ../fix_rigid.cpp:364:23: warning: ‘xflag’ may be used uninitialized in this function [-Wmaybe-uninitialized] fflag[m-1][0] = xflag; ~~~~~~~~~~~~~~^~~~~~~ ../fix_rigid.cpp:342:24: warning: ‘iarg’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (strcmp(arg[iarg],"force") == 0) { ^ ../fix_rigid.cpp:225:32: warning: ‘molecule’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (custom_flag) delete [] molecule; ^~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nh_omp.cpp ../pair_born_coul_wolf_omp.cpp: In member function ‘void LAMMPS_NS::PairBornCoulWolfOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_born_coul_wolf_omp.cpp:182:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv + ../pair_born_coul_wolf_omp.cpp:179:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_born_coul_wolf_omp.cpp:182:59: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv + ../pair_born_coul_wolf_omp.cpp: In member function ‘void LAMMPS_NS::PairBornCoulWolfOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_born_coul_wolf_omp.cpp:182:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv + ../pair_born_coul_wolf_omp.cpp:179:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_born_coul_wolf_omp.cpp:182:59: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv + mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nh_body.cpp ../fix_rigid.cpp: In member function ‘void LAMMPS_NS::FixRigid::set_xv()’: ../fix_rigid.cpp:1484:36: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ^ ../fix_rigid.cpp:1479:23: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] lbonus[line[i]].theta = theta; ^ ../fix_rigid.cpp:1463:36: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ^ ../fix_rigid.cpp:1407:50: warning: ‘yz’ may be used uninitialized in this function [-Wmaybe-uninitialized] x[i][1] += xcm[ibody][1] - ybox*yprd - zbox*yz; ~~~~^~~ ../fix_rigid.cpp:1406:60: warning: ‘xz’ may be used uninitialized in this function [-Wmaybe-uninitialized] x[i][0] += xcm[ibody][0] - xbox*xprd - ybox*xy - zbox*xz; ~~~~^~~ ../fix_rigid.cpp:1406:50: warning: ‘xy’ may be used uninitialized in this function [-Wmaybe-uninitialized] x[i][0] += xcm[ibody][0] - xbox*xprd - ybox*xy - zbox*xz; ~~~~^~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_ipi.cpp ../fix_rigid.cpp: In member function ‘void LAMMPS_NS::FixRigid::set_v()’: ../fix_rigid.cpp:1629:36: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ^ ../fix_rigid.cpp:1616:36: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ^ ../fix_rigid.cpp:1578:40: warning: ‘yz’ may be used uninitialized in this function [-Wmaybe-uninitialized] x1 = x[i][1] + ybox*yprd + zbox*yz; ~~~~^~~ ../fix_rigid.cpp:1577:50: warning: ‘xz’ may be used uninitialized in this function [-Wmaybe-uninitialized] x0 = x[i][0] + xbox*xprd + ybox*xy + zbox*xz; ~~~~^~~ ../fix_rigid.cpp:1577:40: warning: ‘xy’ may be used uninitialized in this function [-Wmaybe-uninitialized] x0 = x[i][0] + xbox*xprd + ybox*xy + zbox*xz; ~~~~^~~ ../fix_rigid.cpp: In member function ‘void LAMMPS_NS::FixRigid::setup_bodies_dynamic()’: ../fix_rigid.cpp:2225:34: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] radone = lbonus[line[i]].length; ^ ../fix_rigid.cpp: In member function ‘void LAMMPS_NS::FixRigid::readfile(int, double*, double**, double**, double**, LAMMPS_NS::imageint*, int*)’: ../fix_rigid.cpp:2298:13: warning: ‘fp’ may be used uninitialized in this function [-Wmaybe-uninitialized] eofflag = comm->read_lines_from_file(fp,nchunk,MAXLINE,buffer); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../xdr_compat.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_oxdna_hbond.cpp ../fix_rigid.cpp: In member function ‘void LAMMPS_NS::FixRigid::setup_bodies_static()’: ../fix_rigid.cpp:2124:31: warning: ‘inbody’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (infile && inbody[ibody]) continue; ~~~~~~~~~~~~^ ../fix_rigid.cpp:2105:36: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ^ ../fix_rigid.cpp:2022:38: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] orient[i][0] = lbonus[line[i]].theta - theta_body; ^ ../fix_rigid.cpp:2087:36: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_long_coul_long.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_skip_size_off2on_oneside.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_sdk_coul_msm_omp.cpp ../pair_oxdna_hbond.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaHbond::init_style()’: ../pair_oxdna_hbond.cpp:799:7: warning: variable ‘irequest’ set but not used [-Wunused-but-set-variable] int irequest; ^~~~~~~~ ../pair_oxdna_hbond.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaHbond::read_restart(FILE*)’: ../pair_oxdna_hbond.cpp:978:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:983:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_hb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:984:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:985:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:986:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:987:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:988:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:989:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:990:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:991:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:992:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:993:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift_hb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:995:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:996:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb1_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:997:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:998:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:999:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1001:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1002:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb2_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1003:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb2_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1004:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1005:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb2_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1007:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1008:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb3_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1009:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb3_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1010:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1011:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb3_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1013:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1014:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1015:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1016:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1017:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1019:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb7[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1020:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb7_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1021:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb7_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1022:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb7[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1023:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb7_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1025:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb8[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1026:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb8_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1027:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb8_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1028:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb8[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1029:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb8_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaHbond::read_restart_settings(FILE*)’: ../pair_oxdna_hbond.cpp:1104:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1105:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_hbond.cpp:1106:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongCoulLong::read_restart(FILE*)’: ../pair_lj_long_coul_long.cpp:360:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_coul_long.cpp:364:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_coul_long.cpp:365:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_coul_long.cpp:366:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongCoulLong::read_restart_settings(FILE*)’: ../pair_lj_long_coul_long.cpp:397:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_coul_long.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_coul_long.cpp:399:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_coul_long.cpp:400:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_coul_long.cpp:401:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_coul_long.cpp:402:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_coul_long.cpp:403:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ewald_order,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../pair_lj_sdk_coul_msm_omp.cpp:25:0: ../lj_sdk_common.h:30:14: warning: ‘int LAMMPS_NS::LJSDKParms::find_lj_type(const char*, const char* const*)’ defined but not used [-Wunused-function] static int find_lj_type(const char *label, ^~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_half_multi_3d_newton_tri.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fft3d_wrap.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../thr_data.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pppm_disp_tip4p_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../domain_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../minimize.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nh_sphere.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_sph_taitwater_morris.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_msst.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reader.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lennard_mdf.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nvt_eff.cpp ../pair_lennard_mdf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJ_AB_MDF::read_restart(FILE*)’: ../pair_lennard_mdf.cpp:314:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lennard_mdf.cpp:318:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aparm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lennard_mdf.cpp:319:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bparm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lennard_mdf.cpp:320:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lennard_mdf.cpp:321:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lennard_mdf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJ_AB_MDF::read_restart_settings(FILE*)’: ../pair_lennard_mdf.cpp:348:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../respa_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../read_restart.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../imbalance.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_group_group.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_class2.cpp ../read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::file_search(char*, char*)’: ../read_restart.cpp:628:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (strlen(&ep->d_name[nbegin]) < n) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ ../read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::command(int, char**)’: ../read_restart.cpp:302:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ../read_restart.cpp:306:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&procsperfile,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../read_restart.cpp:309:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ../read_restart.cpp:313:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../read_restart.cpp:319:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(buf,sizeof(double),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../read_restart.cpp:379:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ../read_restart.cpp:382:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&procsperfile,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../read_restart.cpp:391:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ../read_restart.cpp:395:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../read_restart.cpp:401:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(buf,sizeof(double),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::file_layout()’: ../read_restart.cpp:1074:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(all_written_send_sizes,sizeof(int),nprocs_file,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../read_restart.cpp: In member function ‘char* LAMMPS_NS::ReadRestart::read_string()’: ../read_restart.cpp:1256:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(value,sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::read_int_vec(int, int*)’: ../read_restart.cpp:1268:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(vec,sizeof(int),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../read_restart.cpp: In member function ‘void LAMMPS_NS::ReadRestart::read_double_vec(int, double*)’: ../read_restart.cpp:1279:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(vec,sizeof(double),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_class2.cpp: In member function ‘virtual void LAMMPS_NS::BondClass2::read_restart(FILE*)’: ../bond_class2.cpp:187:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_class2.cpp:188:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_class2.cpp:189:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_class2.cpp:190:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_nm_cut_coul_cut_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_born_coul_wolf.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_dipole_chunk.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lubricate.cpp ../pair_born_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulWolf::read_restart(FILE*)’: ../pair_born_coul_wolf.cpp:365:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_wolf.cpp:369:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_wolf.cpp:370:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_wolf.cpp:371:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_wolf.cpp:372:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_wolf.cpp:373:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_wolf.cpp:374:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulWolf::read_restart_settings(FILE*)’: ../pair_born_coul_wolf.cpp:406:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alf,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_wolf.cpp:407:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_wolf.cpp:408:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_wolf.cpp:409:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_wolf.cpp:410:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_wolf.cpp: In member function ‘virtual double LAMMPS_NS::PairBornCoulWolf::single(int, int, int, int, double, double, double, double&)’: ../pair_born_coul_wolf.cpp:487:30: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv ~~~~~~~~~~~~~~~^~~~~ ../pair_born_coul_wolf.cpp:487:53: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv ~~~~~~~~~~~~~~~^~~~~~ ../pair_born_coul_wolf.cpp:482:33: warning: ‘erfcc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor * (erfcc-e_shift*r); ~~~~~~^~~~~~~~~~~ ../pair_born_coul_wolf.cpp:482:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor * (erfcc-e_shift*r); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_wolf.cpp:482:41: warning: ‘r’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor * (erfcc-e_shift*r); ~~~~~~~^~ ../pair_born_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulWolf::compute(int, int)’: ../pair_born_coul_wolf.cpp:171:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv + ~~~~~~~~~~~~~~~^~~~~ ../pair_born_coul_wolf.cpp:168:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_born_coul_wolf.cpp:172:30: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] d[itype][jtype]*r6inv*r2inv - offset[itype][jtype]; ~~~~~~~~~~~~~~~^~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lubricate_poly_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_nm_cut_coul_long.cpp ../pair_lubricate.cpp: In member function ‘virtual void LAMMPS_NS::PairLubricate::read_restart(FILE*)’: ../pair_lubricate.cpp:694:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricate.cpp:698:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricate.cpp:699:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricate.cpp: In member function ‘virtual void LAMMPS_NS::PairLubricate::read_restart_settings(FILE*)’: ../pair_lubricate.cpp:732:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricate.cpp:733:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flaglog,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricate.cpp:734:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagfld,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricate.cpp:735:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricate.cpp:736:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricate.cpp:737:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricate.cpp:738:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricate.cpp:739:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagHI,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lubricate.cpp:740:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagVF,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_opt.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_hexorder_atom.cpp ../pair_nm_cut_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCutCoulLong::read_restart(FILE*)’: ../pair_nm_cut_coul_long.cpp:427:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_long.cpp:431:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&e0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_long.cpp:432:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_long.cpp:433:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nn[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_long.cpp:434:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_long.cpp:435:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCutCoulLong::read_restart_settings(FILE*)’: ../pair_nm_cut_coul_long.cpp:468:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_long.cpp:469:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_long.cpp:470:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_long.cpp:471:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_long.cpp:472:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_long.cpp:473:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_long.cpp:474:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_long.cpp: In member function ‘virtual double LAMMPS_NS::PairNMCutCoulLong::single(int, int, int, int, double, double, double, double&)’: ../pair_nm_cut_coul_long.cpp:560:28: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ ../pair_nm_cut_coul_long.cpp:560:40: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_long.cpp:563:56: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_nm_cut_coul_long.cpp:558:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*erfc; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_long.cpp:570:46: warning: ‘r’ may be used uninitialized in this function [-Wmaybe-uninitialized] nn[itype][jtype]*r0m[itype][jtype]/pow(r,mm[itype][jtype])) - ~~~^~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCutCoulLong::compute(int, int)’: ../pair_nm_cut_coul_long.cpp:187:21: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_long.cpp:192:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_nm_cut_coul_long.cpp:197:50: warning: ‘rninv’ may be used uninitialized in this function [-Wmaybe-uninitialized] (mm[itype][jtype]*r0n[itype][jtype]*rninv - ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ../pair_nm_cut_coul_long.cpp:198:50: warning: ‘rminv’ may be used uninitialized in this function [-Wmaybe-uninitialized] nn[itype][jtype]*r0m[itype][jtype]*rminv) - offset[itype][jtype]; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ../pair_nm_cut_coul_long.cpp:189:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_long.cpp:189:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pppm_disp_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_halffull_newtoff.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_sdk_coul_msm.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nvt_manifold_rattle.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_tip4p_cut.cpp In file included from ../pair_lj_sdk_coul_msm.cpp:37:0: ../lj_sdk_common.h:30:14: warning: ‘int LAMMPS_NS::LJSDKParms::find_lj_type(const char*, const char* const*)’ defined but not used [-Wunused-function] static int find_lj_type(const char *label, ^~~~~~~~~~~~ ../pair_tip4p_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairTIP4PCut::read_restart(FILE*)’: ../pair_tip4p_cut.cpp:480:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tip4p_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairTIP4PCut::read_restart_settings(FILE*)’: ../pair_tip4p_cut.cpp:507:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tip4p_cut.cpp:508:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tip4p_cut.cpp:509:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tip4p_cut.cpp:510:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tip4p_cut.cpp:511:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tip4p_cut.cpp:513:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tip4p_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairTIP4PCut::compute(int, int)’: ../pair_tip4p_cut.cpp:338:24: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ~~~~~~~~~~~^~~~~ ../pair_tip4p_cut.cpp:337:24: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ~~~~~~~~~~~^~~~~ ../pair_tip4p_cut.cpp:265:18: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fH[0]; ^ ../pair_tip4p_cut.cpp:261:18: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fH[0]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_harmonic_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../msm.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../main.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_smooth_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper_harmonic.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../read_data.cpp ../pair_lj_smooth_omp.cpp: In member function ‘void LAMMPS_NS::PairLJSmoothOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_smooth_omp.cpp:154:38: warning: ‘tsq’ may be used uninitialized in this function [-Wmaybe-uninitialized] ljsw4[itype][jtype]*tsq*tsq/4.0 - offset[itype][jtype]; ../pair_lj_smooth_omp.cpp:153:68: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] ljsw2[itype][jtype]*tsq/2.0 - ljsw3[itype][jtype]*tsq*t/3.0 - ../pair_lj_smooth_omp.cpp:149:27: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv * (lj3[itype][jtype]*r6inv - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ lj4[itype][jtype]) - offset[itype][jtype]; ~~~~~~~~~~~~~~~~~~ ../pair_lj_smooth_omp.cpp: In member function ‘void LAMMPS_NS::PairLJSmoothOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_smooth_omp.cpp:154:38: warning: ‘tsq’ may be used uninitialized in this function [-Wmaybe-uninitialized] ljsw4[itype][jtype]*tsq*tsq/4.0 - offset[itype][jtype]; ../pair_lj_smooth_omp.cpp:153:68: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] ljsw2[itype][jtype]*tsq/2.0 - ljsw3[itype][jtype]*tsq*t/3.0 - ../pair_lj_smooth_omp.cpp:149:47: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv * (lj3[itype][jtype]*r6inv - ../improper_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::ImproperHarmonic::read_restart(FILE*)’: ../improper_harmonic.cpp:280:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_harmonic.cpp:281:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../read_data.cpp: In member function ‘void LAMMPS_NS::ReadData::parse_keyword(int)’: ../read_data.cpp:1966:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((blank == strlen(line)) || (line[blank] == '#')) { ~~~~~~^~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_bocs.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_enforce2d.cpp ../fix_bocs.cpp: In member function ‘int LAMMPS_NS::FixBocs::read_F_table(char*, int)’: ../fix_bocs.cpp:628:8: warning: unused variable ‘separator’ [-Wunused-variable] char separator = ','; ^~~~~~~~~ ../fix_bocs.cpp:632:10: warning: unused variable ‘n1’ [-Wunused-variable] double n1, n2; ^~ ../fix_bocs.cpp:632:14: warning: unused variable ‘n2’ [-Wunused-variable] double n1, n2; ^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper_distance.cpp ../msm.cpp: In member function ‘virtual void LAMMPS_NS::MSM::direct(int)’: ../msm.cpp:1640:23: warning: ‘v5sum’ may be used uninitialized in this function [-Wmaybe-uninitialized] v5sum += v5_directn[k] * qtmp2; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ../msm.cpp:1639:23: warning: ‘v4sum’ may be used uninitialized in this function [-Wmaybe-uninitialized] v4sum += v4_directn[k] * qtmp2; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ../msm.cpp:1638:23: warning: ‘v3sum’ may be used uninitialized in this function [-Wmaybe-uninitialized] v3sum += v3_directn[k] * qtmp2; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ../msm.cpp:1637:23: warning: ‘v2sum’ may be used uninitialized in this function [-Wmaybe-uninitialized] v2sum += v2_directn[k] * qtmp2; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ../msm.cpp:1636:23: warning: ‘v1sum’ may be used uninitialized in this function [-Wmaybe-uninitialized] v1sum += v1_directn[k] * qtmp2; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ../msm.cpp:1635:23: warning: ‘v0sum’ may be used uninitialized in this function [-Wmaybe-uninitialized] v0sum += v0_directn[k] * qtmp2; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ../msm.cpp: In member function ‘void LAMMPS_NS::MSM::direct_top(int)’: ../msm.cpp:1995:23: warning: ‘v5sum’ may be used uninitialized in this function [-Wmaybe-uninitialized] v5sum += v5_direct_top[k] * qtmp2; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../msm.cpp:1994:23: warning: ‘v4sum’ may be used uninitialized in this function [-Wmaybe-uninitialized] v4sum += v4_direct_top[k] * qtmp2; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../msm.cpp:1993:23: warning: ‘v3sum’ may be used uninitialized in this function [-Wmaybe-uninitialized] v3sum += v3_direct_top[k] * qtmp2; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../msm.cpp:1992:23: warning: ‘v2sum’ may be used uninitialized in this function [-Wmaybe-uninitialized] v2sum += v2_direct_top[k] * qtmp2; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../msm.cpp:1991:23: warning: ‘v1sum’ may be used uninitialized in this function [-Wmaybe-uninitialized] v1sum += v1_direct_top[k] * qtmp2; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../msm.cpp:1990:23: warning: ‘v0sum’ may be used uninitialized in this function [-Wmaybe-uninitialized] v0sum += v0_direct_top[k] * qtmp2; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_distance.cpp: In member function ‘virtual void LAMMPS_NS::ImproperDistance::read_restart(FILE*)’: ../improper_distance.cpp:253:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_distance.cpp:254:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_mdpd.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_full_bin_3d.cpp ../pair_mdpd.cpp: In member function ‘virtual void LAMMPS_NS::PairMDPD::read_restart(FILE*)’: ../pair_mdpd.cpp:353:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mdpd.cpp:357:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&A_att[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mdpd.cpp:358:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&B_rep[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mdpd.cpp:359:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mdpd.cpp:360:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mdpd.cpp:361:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_r[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mdpd.cpp: In member function ‘virtual void LAMMPS_NS::PairMDPD::read_restart_settings(FILE*)’: ../pair_mdpd.cpp:391:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&temperature,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mdpd.cpp:392:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mdpd.cpp:393:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mdpd.cpp:394:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_sna_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_coul_cut.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_event_displace.cpp ../pair_lj_cut_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulCut::read_restart(FILE*)’: ../pair_lj_cut_coul_cut.cpp:357:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut.cpp:361:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut.cpp:362:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut.cpp:363:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut.cpp:364:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulCut::read_restart_settings(FILE*)’: ../pair_lj_cut_coul_cut.cpp:394:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut.cpp:396:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut.cpp:397:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut.cpp: In member function ‘virtual double LAMMPS_NS::PairLJCutCoulCut::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_cut_coul_cut.cpp:453:37: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_cut_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulCut::compute(int, int)’: ../pair_lj_cut_coul_cut.cpp:140:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~~~~~~~~~~~~~^~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_temp_drude.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_vcm_chunk.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_pe.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_bin_newtoff_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_buck_coul_msm_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../imbalance_group.cpp ../npair_half_bin_newtoff_omp.cpp: In function ‘_ZN9LAMMPS_NS22NPairHalfBinNewtoffOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_half_bin_newtoff_omp.cpp:117:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_bin_newtoff_omp.cpp:50:43: note: ‘iatom’ was declared here int i,j,k,n,itype,jtype,ibin,which,imol,iatom; ^~~~~ ../npair_half_bin_newtoff_omp.cpp:116:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_bin_newtoff_omp.cpp:51:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_half_bin_newtoff_omp.cpp:117:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_bin_newtoff_omp.cpp:50:38: note: ‘imol’ was declared here int i,j,k,n,itype,jtype,ibin,which,imol,iatom; ^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_skip_size.cpp ../pair_buck_coul_msm_omp.cpp: In member function ‘void LAMMPS_NS::PairBuckCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_buck_coul_msm_omp.cpp:167:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_buck_coul_msm_omp.cpp:166:13: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*egamma; ^~~~~ ../pair_buck_coul_msm_omp.cpp:170:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ../pair_buck_coul_msm_omp.cpp:170:59: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute.cpp ../pair_buck_coul_msm_omp.cpp: In member function ‘void LAMMPS_NS::PairBuckCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_buck_coul_msm_omp.cpp:166:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*egamma; ^~~~~ ../pair_buck_coul_msm_omp.cpp:166:13: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_buck_coul_msm_omp.cpp:170:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ../pair_buck_coul_msm_omp.cpp:170:59: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_dpd_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_full_ghost_bin_2d.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_quadratic.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_long_cs.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lubricate_omp.cpp ../dihedral_quadratic.cpp: In member function ‘virtual void LAMMPS_NS::DihedralQuadratic::read_restart(FILE*)’: ../dihedral_quadratic.cpp:327:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_quadratic.cpp:328:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&phi0[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../python.cpp ../pair_coul_long_cs.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulLongCS::compute(int, int)’: ../pair_coul_long_cs.cpp:169:19: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~ ../pair_coul_long_cs.cpp:169:19: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_coul_long_cs.cpp:171:46: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_coul_long_cs.cpp:171:34: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../error.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../ntopo_bond_partial.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_polymorphic.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_born_coul_long_omp.cpp ../pair_polymorphic.cpp: In member function ‘virtual void LAMMPS_NS::PairPolymorphic::read_file(char*)’: ../pair_polymorphic.cpp:580:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_polymorphic.cpp:581:43: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] while (line == strchr(line,'#')) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_polymorphic.cpp:597:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_polymorphic.cpp:615:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_polymorphic.cpp:651:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_polymorphic.cpp: In member function ‘void LAMMPS_NS::PairPolymorphic::grab(FILE*, int, double*)’: ../pair_polymorphic.cpp:882:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_mvv_tdpd.cpp ../pair_born_coul_long_omp.cpp: In member function ‘void LAMMPS_NS::PairBornCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_born_coul_long_omp.cpp:171:13: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_born_coul_long_omp.cpp:172:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_born_coul_long_omp.cpp:175:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv ../pair_born_coul_long_omp.cpp:175:59: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv ../pair_polymorphic.cpp: In member function ‘virtual void LAMMPS_NS::PairPolymorphic::compute(int, int)’: ../pair_polymorphic.cpp:200:9: warning: ‘emb’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (emb > epsilon) { ^~ ../pair_polymorphic.cpp:291:29: warning: ‘delz’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (evflag) ev_tally(i,i,nlocal,newton_pair,evdwl,0.0,0.0,delx,dely,delz); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_polymorphic.cpp:291:29: warning: ‘dely’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_polymorphic.cpp:291:29: warning: ‘delx’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_born_coul_long_omp.cpp: In member function ‘void LAMMPS_NS::PairBornCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_born_coul_long_omp.cpp:171:13: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_born_coul_long_omp.cpp:171:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_born_coul_long_omp.cpp:175:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv ../pair_born_coul_long_omp.cpp:175:59: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nve_tri.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../comm_brick.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_halffull_newtoff_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_coul_dsf_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_fene_expand.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nvt_sllod_omp.cpp ../comm_brick.cpp: In member function ‘virtual void LAMMPS_NS::CommBrick::borders()’: ../comm_brick.cpp:715:28: warning: ‘nfirst’ may be used uninitialized in this function [-Wmaybe-uninitialized] int nsend,nrecv,sendflag,nfirst,nlast,ngroup; ^~~~~~ ../bond_fene_expand.cpp: In member function ‘virtual void LAMMPS_NS::BondFENEExpand::read_restart(FILE*)’: ../bond_fene_expand.cpp:229:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_fene_expand.cpp:230:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_fene_expand.cpp:231:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_fene_expand.cpp:232:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_fene_expand.cpp:233:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_dsf_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulDSFOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_cut_coul_dsf_omp.cpp:182:40: warning: ‘erfcc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift); ~~~~~~^~~~~~~~~~~ ../pair_lj_cut_coul_dsf_omp.cpp:182:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift); ^~~~~ ../pair_lj_cut_coul_dsf_omp.cpp:176:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_dsf_omp.cpp:182:43: warning: ‘r’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift); ~^~~~~~~~ ../pair_lj_cut_coul_dsf_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulDSFOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_cut_coul_dsf_omp.cpp:182:40: warning: ‘erfcc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift); ~~~~~~^~~~~~~~~~~ ../pair_lj_cut_coul_dsf_omp.cpp:182:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift); ^~~~~ ../pair_lj_cut_coul_dsf_omp.cpp:176:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ../pair_lj_cut_coul_dsf_omp.cpp:182:43: warning: ‘r’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift); ~^~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../region_cone.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rattle.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../delete_atoms.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_bin_newtoff.cpp ../region_cone.cpp: In member function ‘virtual int LAMMPS_NS::RegCone::surface_exterior(double*, double)’: ../region_cone.cpp:596:16: warning: ‘*((void*)& nearest +16)’ may be used uninitialized in this function [-Wmaybe-uninitialized] add_contact(0,x,nearest[0],nearest[1],nearest[2]); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../region_cone.cpp:596:16: warning: ‘*((void*)& nearest +8)’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../region_cone.cpp:596:16: warning: ‘nearest’ may be used uninitialized in this function [-Wmaybe-uninitialized] mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_ti.cpp ../npair_half_bin_newtoff.cpp: In member function ‘virtual void LAMMPS_NS::NPairHalfBinNewtoff::build(LAMMPS_NS::NeighList*)’: ../npair_half_bin_newtoff.cpp:106:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_bin_newtoff.cpp:107:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_bin_newtoff.cpp:107:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_valence_angles.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../comm_tiled.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_peri_ves.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../remap_wrap.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nvk.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_charmm_coul_long_soft_omp.cpp ../pair_peri_ves.cpp: In member function ‘virtual void LAMMPS_NS::PairPeriVES::read_restart(FILE*)’: ../pair_peri_ves.cpp:552:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_ves.cpp:556:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bulkmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_ves.cpp:557:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shearmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_ves.cpp:558:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&s00[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_ves.cpp:559:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_ves.cpp:560:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_ves.cpp:561:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&m_lambdai[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_ves.cpp:562:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&m_taubi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_erotate_rigid.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_press_berendsen.cpp ../comm_tiled.cpp: In member function ‘void LAMMPS_NS::CommTiled::box_drop_brick(int, double*, double*, int&)’: ../comm_tiled.cpp:1503:11: warning: ‘dir’ may be used uninitialized in this function [-Wmaybe-uninitialized] index += dir; ~~~~~~^~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_heat_flux_tally.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_qeq_fire.cpp ../comm_tiled.cpp: In member function ‘virtual void LAMMPS_NS::CommTiled::borders()’: ../comm_tiled.cpp:767:13: warning: ‘nlast’ may be used uninitialized in this function [-Wmaybe-uninitialized] int i,m,n,nlast,nsend,nrecv,ngroup,ncount,ncountall; ^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_edpd_source.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_gle.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_print.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid_nh_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_long_soft_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_size_bin_newton_tri.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_pressure_bocs.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_dpd.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dump_movie.cpp ../fix_rigid_nh_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidNHOMP::set_xv_thr() [with int = 1; int = 1]’: ../fix_rigid_nh_omp.cpp:779:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_nh_omp.cpp:774:25: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] lbonus[line[i]].theta = theta; ../fix_rigid_nh_omp.cpp:758:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ../fix_rigid_nh_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidNHOMP::set_xv_thr() [with int = 1; int = 0]’: ../fix_rigid_nh_omp.cpp:779:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_nh_omp.cpp:774:25: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] lbonus[line[i]].theta = theta; ../fix_rigid_nh_omp.cpp:758:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ../pair_dpd.cpp: In member function ‘virtual void LAMMPS_NS::PairDPD::read_restart(FILE*)’: ../pair_dpd.cpp:319:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd.cpp:323:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd.cpp:324:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd.cpp:325:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../fix_rigid_nh_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidNHOMP::set_xv_thr() [with int = 0; int = 1]’: ../fix_rigid_nh_omp.cpp:779:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../pair_dpd.cpp: In member function ‘virtual void LAMMPS_NS::PairDPD::read_restart_settings(FILE*)’: ../pair_dpd.cpp:353:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&temperature,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd.cpp:354:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd.cpp:355:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd.cpp:356:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../fix_rigid_nh_omp.cpp:774:25: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] lbonus[line[i]].theta = theta; ../fix_rigid_nh_omp.cpp:758:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ../fix_rigid_nh_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidNHOMP::set_xv_thr() [with int = 0; int = 0]’: ../fix_rigid_nh_omp.cpp:779:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_nh_omp.cpp:774:25: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] lbonus[line[i]].theta = theta; ../fix_rigid_nh_omp.cpp:758:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_half_multi_2d_newton_tri.cpp ../fix_rigid_nh_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidNHOMP::set_v_thr() [with int = 1; int = 1]’: ../fix_rigid_nh_omp.cpp:956:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_nh_omp.cpp:943:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ../fix_rigid_nh_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidNHOMP::set_v_thr() [with int = 0; int = 1]’: ../fix_rigid_nh_omp.cpp:956:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_nh_omp.cpp:943:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ../compute_pressure_bocs.cpp: In member function ‘double LAMMPS_NS::ComputePressureBocs::get_cg_p_corr(double**, int, double)’: ../compute_pressure_bocs.cpp:249:10: warning: ‘correction’ may be used uninitialized in this function [-Wmaybe-uninitialized] return correction; ^~~~~~~~~~ ../fix_rigid_nh_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidNHOMP::set_v_thr() [with int = 0; int = 0]’: ../fix_rigid_nh_omp.cpp:956:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_nh_omp.cpp:943:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ../compute_pressure_bocs.cpp: In member function ‘virtual double LAMMPS_NS::ComputePressureBocs::compute_scalar()’: ../compute_pressure_bocs.cpp:331:42: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] scalar = (temperature->dof * boltz * t + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ ../compute_pressure_bocs.cpp: In member function ‘virtual void LAMMPS_NS::ComputePressureBocs::compute_vector()’: ../compute_pressure_bocs.cpp:393:31: warning: ‘ke_tensor’ may be used uninitialized in this function [-Wmaybe-uninitialized] vector[1] = (ke_tensor[1] + virial[1]) * inv_volume * nktv2p; ~~~~~~~~~~~^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_eam_alloy.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nvt_sllod.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../ntopo_improper_template.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_meso_t_atom.cpp ../pair_eam_alloy.cpp: In member function ‘virtual void LAMMPS_NS::PairEAMAlloy::read_file(char*)’: ../pair_eam_alloy.cpp:140:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_alloy.cpp:141:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_alloy.cpp:142:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_alloy.cpp:143:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_alloy.cpp:168:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_alloy.cpp:192:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj96_cut.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_tmd.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_tersoff_zbl_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../force.cpp ../pair_lj96_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJ96Cut::read_restart(FILE*)’: ../pair_lj96_cut.cpp:612:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj96_cut.cpp:616:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj96_cut.cpp:617:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj96_cut.cpp:618:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj96_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJ96Cut::read_restart_settings(FILE*)’: ../pair_lj96_cut.cpp:647:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj96_cut.cpp:648:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj96_cut.cpp:649:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj96_cut.cpp:650:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj96_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJ96Cut::compute_outer(int, int)’: ../pair_lj96_cut.cpp:394:19: warning: ‘r2inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair = factor_lj*forcelj*r2inv; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj96_cut.cpp:397:29: warning: ‘fpair’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (evflag) ev_tally(i,j,nlocal,newton_pair, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ evdwl,0.0,fpair,delx,dely,delz); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_omp.cpp ../fix_tmd.cpp: In member function ‘void LAMMPS_NS::FixTMD::readfile(char*)’: ../fix_tmd.cpp:457:7: warning: ‘imageflag’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (imageflag) ^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nh_eff.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid_nve_small.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_nm_cut_coul_cut.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_charmm.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../library.cpp ../pair_nm_cut_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart(FILE*)’: ../pair_nm_cut_coul_cut.cpp:381:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_cut.cpp:385:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&e0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_cut.cpp:386:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_cut.cpp:387:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nn[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_cut.cpp:388:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_cut.cpp:389:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_cut.cpp:390:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart_settings(FILE*)’: ../pair_nm_cut_coul_cut.cpp:422:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_cut.cpp:423:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_cut.cpp:424:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_cut.cpp:425:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_cut.cpp:426:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_charmm.cpp: In member function ‘virtual void LAMMPS_NS::DihedralCharmm::read_restart(FILE*)’: ../dihedral_charmm.cpp:429:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_charmm.cpp:430:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_charmm.cpp:431:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_charmm.cpp:432:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&weight[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_charmm.cpp:433:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&weightflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_cut.cpp: In member function ‘virtual double LAMMPS_NS::PairNMCutCoulCut::single(int, int, int, int, double, double, double, double&)’: ../pair_nm_cut_coul_cut.cpp:486:46: warning: ‘r’ may be used uninitialized in this function [-Wmaybe-uninitialized] nn[itype][jtype]*r0m[itype][jtype]/pow(r,mm[itype][jtype])) - ~~~^~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCutCoulCut::compute(int, int)’: ../pair_nm_cut_coul_cut.cpp:151:58: warning: ‘rninv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = e0nm[itype][jtype]*(mm[itype][jtype] * ~~~~~~~~~~~~~~~~~~ r0n[itype][jtype]*rninv - ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_nm_cut_coul_cut.cpp:153:58: warning: ‘rminv’ may be used uninitialized in this function [-Wmaybe-uninitialized] nn[itype][jtype] * ~~~~~~~~~~~~~~~~~~ r0m[itype][jtype]*rminv) - ~~~~~~~~~~~~~~~~~^~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_respa_bin_newton_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_dpd.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_tersoff_mod_c_omp.cpp ../npair_half_respa_bin_newton_omp.cpp: In function ‘_ZN9LAMMPS_NS26NPairHalfRespaBinNewtonOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_half_respa_bin_newton_omp.cpp:194:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_bin_newton_omp.cpp:54:54: note: ‘iatom’ was declared here int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom; ^~~~~ ../npair_half_respa_bin_newton_omp.cpp:193:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_respa_bin_newton_omp.cpp:55:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_half_respa_bin_newton_omp.cpp:194:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_bin_newton_omp.cpp:54:49: note: ‘imol’ was declared here int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom; ^~~~ ../npair_half_respa_bin_newton_omp.cpp:167:51: warning: ‘n_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ~~~~~~~~^~ ../npair_half_respa_bin_newton_omp.cpp:54:40: note: ‘n_middle’ was declared here int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom; ^~~~~~~~ ../npair_half_respa_bin_newton_omp.cpp:212:55: warning: ‘neighptr_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ^ ../npair_half_respa_bin_newton_omp.cpp:57:34: note: ‘neighptr_middle’ was declared here int *neighptr,*neighptr_inner,*neighptr_middle; ^~~~~~~~~~~~~~~ In file included from ../neigh_list.h:18:0, from ../npair_half_respa_bin_newton_omp.cpp:17: ../my_page.h:224:9: warning: ‘ipage_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] errorflag = 2; ^~~~~~~~~ ../npair_half_respa_bin_newton_omp.cpp:94:16: note: ‘ipage_middle’ was declared here MyPage *ipage_middle; ^~~~~~~~~~~~ ../npair_half_respa_bin_newton_omp.cpp:238:26: warning: ‘numneigh_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] numneigh_middle[i] = n_middle; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../npair_half_respa_bin_newton_omp.cpp:81:22: note: ‘numneigh_middle’ was declared here int *ilist_middle,*numneigh_middle,**firstneigh_middle; ^~~~~~~~~~~~~~~ ../npair_half_respa_bin_newton_omp.cpp:237:28: warning: ‘firstneigh_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] firstneigh_middle[i] = neighptr_middle; ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ../npair_half_respa_bin_newton_omp.cpp:81:40: note: ‘firstneigh_middle’ was declared here int *ilist_middle,*numneigh_middle,**firstneigh_middle; ^~~~~~~~~~~~~~~~~ ../npair_half_respa_bin_newton_omp.cpp:236:23: warning: ‘ilist_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] ilist_middle[i] = i; ~~~~~~~~~~~~~~~~^~~ ../npair_half_respa_bin_newton_omp.cpp:81:8: note: ‘ilist_middle’ was declared here int *ilist_middle,*numneigh_middle,**firstneigh_middle; ^~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid_nh.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_cut_soft_omp.cpp ../fix_rigid_nh.cpp: In member function ‘virtual void LAMMPS_NS::FixRigidNH::final_integrate()’: ../fix_rigid_nh.cpp:594:7: warning: unused variable ‘i’ [-Wunused-variable] int i,ibody; ^ ../fix_rigid_nh.cpp:596:15: warning: unused variable ‘xy’ [-Wunused-variable] double dtfm,xy,xz,yz; ^~ ../fix_rigid_nh.cpp:596:18: warning: unused variable ‘xz’ [-Wunused-variable] double dtfm,xy,xz,yz; ^~ ../fix_rigid_nh.cpp:596:21: warning: unused variable ‘yz’ [-Wunused-variable] double dtfm,xy,xz,yz; ^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_spring_self.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_fene_expand_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_tip4p_long_omp.cpp ../bond_fene_expand_omp.cpp: In member function ‘void LAMMPS_NS::BondFENEExpandOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 1]’: ../bond_fene_expand_omp.cpp:147:35: warning: ‘sr6’ may be used uninitialized in this function [-Wmaybe-uninitialized] ebond += 4.0*epsilon[type]*sr6*(sr6-1.0) + epsilon[type]; ~~~~~~~~~~~~~~~~~^~~~ ../bond_fene_expand_omp.cpp: In member function ‘void LAMMPS_NS::BondFENEExpandOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 0]’: ../bond_fene_expand_omp.cpp:147:35: warning: ‘sr6’ may be used uninitialized in this function [-Wmaybe-uninitialized] ebond += 4.0*epsilon[type]*sr6*(sr6-1.0) + epsilon[type]; ~~~~~~~~~~~~~~~~~^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_long_soft.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../balance.cpp ../pair_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulLongSoft::read_restart(FILE*)’: ../pair_coul_long_soft.cpp:301:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_long_soft.cpp:305:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulLongSoft::read_restart_settings(FILE*)’: ../pair_coul_long_soft.cpp:332:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_long_soft.cpp:333:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_long_soft.cpp:335:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_long_soft.cpp:336:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_long_soft.cpp:337:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 1; int = 1; int = 1]’: ../pair_tip4p_long_omp.cpp:357:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_long_omp.cpp:353:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_tip4p_long_omp.cpp:433:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_tip4p_long_omp.cpp:432:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_coul_long_soft.cpp: In member function ‘virtual double LAMMPS_NS::PairCoulLongSoft::single(int, int, int, int, double, double, double, double&)’: ../pair_coul_long_soft.cpp:376:15: warning: ‘denc’ may be used uninitialized in this function [-Wmaybe-uninitialized] prefactor = force->qqrd2e * lam1[itype][jtype] * atom->q[i]*atom->q[j] / denc; ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_long_soft.cpp:377:13: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*erfc; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 1; int = 1; int = 0]’: ../pair_tip4p_long_omp.cpp:357:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_long_omp.cpp:353:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_tip4p_long_omp.cpp:433:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_tip4p_long_omp.cpp:432:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_sw_omp.cpp ../pair_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 1; int = 0; int = 1]’: ../pair_tip4p_long_omp.cpp:432:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_tip4p_long_omp.cpp:357:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_long_omp.cpp:353:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_tip4p_long_omp.cpp:433:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 1; int = 0; int = 0]’: ../pair_tip4p_long_omp.cpp:432:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_tip4p_long_omp.cpp:357:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_long_omp.cpp:353:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_tip4p_long_omp.cpp:433:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 0; int = 0; int = 0]’: ../pair_tip4p_long_omp.cpp:416:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_tip4p_long_omp.cpp:412:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_tip4p_long_omp.cpp:357:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_long_omp.cpp:353:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 0; int = 1; int = 1; int = 1]’: ../pair_tip4p_long_omp.cpp:433:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_tip4p_long_omp.cpp:432:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_tip4p_long_omp.cpp:357:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_long_omp.cpp:353:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_tip4p_long_omp.cpp:441:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_tip4p_long_omp.cpp:439:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_tip4p_long_omp.cpp:439:15: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_tip4p_long_omp.cpp:441:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 0; int = 1; int = 1; int = 0]’: ../pair_tip4p_long_omp.cpp:433:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_tip4p_long_omp.cpp:432:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_tip4p_long_omp.cpp:357:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_long_omp.cpp:353:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_tip4p_long_omp.cpp:441:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_tip4p_long_omp.cpp:439:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_tip4p_long_omp.cpp:439:15: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_tip4p_long_omp.cpp:441:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 0; int = 1; int = 0; int = 1]’: ../pair_tip4p_long_omp.cpp:433:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_tip4p_long_omp.cpp:432:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_tip4p_long_omp.cpp:357:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_long_omp.cpp:353:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_hbond_dreiding_lj_omp.cpp ../pair_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 0; int = 1; int = 0; int = 0]’: ../pair_tip4p_long_omp.cpp:432:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_tip4p_long_omp.cpp:357:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_long_omp.cpp:353:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_tip4p_long_omp.cpp:433:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_zero.cpp ../pair_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 0; int = 0; int = 0; int = 0]’: ../pair_tip4p_long_omp.cpp:416:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_tip4p_long_omp.cpp:412:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_tip4p_long_omp.cpp:357:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_long_omp.cpp:353:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_heat_flux.cpp ../pair_zero.cpp: In member function ‘virtual void LAMMPS_NS::PairZero::read_restart(FILE*)’: ../pair_zero.cpp:176:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_zero.cpp:180:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_zero.cpp: In member function ‘virtual void LAMMPS_NS::PairZero::read_restart_settings(FILE*)’: ../pair_zero.cpp:205:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_zero.cpp:206:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&coeffflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_vashishta_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_zero.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_wall_srd.cpp ../angle_zero.cpp: In member function ‘virtual void LAMMPS_NS::AngleZero::read_restart(FILE*)’: ../angle_zero.cpp:133:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_qeq_shielded.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_npt_asphere.cpp ../fix_wall_srd.cpp: In constructor ‘LAMMPS_NS::FixWallSRD::FixWallSRD(LAMMPS_NS::LAMMPS*, int, char**)’: ../fix_wall_srd.cpp:67:24: warning: ‘newwall’ may be used uninitialized in this function [-Wmaybe-uninitialized] wallwhich[nwall] = newwall; ~~~~~~~~~~~~~~~~~^~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pppm_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_mie_cut.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_tersoff_zbl.cpp ../pair_mie_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairMIECut::read_restart(FILE*)’: ../pair_mie_cut.cpp:633:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mie_cut.cpp:637:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mie_cut.cpp:638:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mie_cut.cpp:639:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamR[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mie_cut.cpp:640:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamA[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mie_cut.cpp:641:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mie_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairMIECut::read_restart_settings(FILE*)’: ../pair_mie_cut.cpp:672:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mie_cut.cpp:673:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mie_cut.cpp:674:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mie_cut.cpp:675:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mie_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairMIECut::compute_outer(int, int)’: ../pair_mie_cut.cpp:396:19: warning: ‘r2inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair = factor_mie*forcemie*r2inv; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_mie_cut.cpp:399:29: warning: ‘fpair’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (evflag) ev_tally(i,j,nlocal,newton_pair, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ evdwl,0.0,fpair,delx,dely,delz); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_hybrid.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_basal_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_gyration.cpp ../bond_hybrid.cpp: In member function ‘virtual void LAMMPS_NS::BondHybrid::read_restart(FILE*)’: ../bond_hybrid.cpp:322:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_hybrid.cpp:331:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../bond_hybrid.cpp:334:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_eam.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_class2_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dump_local.cpp ../pair_eam.cpp: In member function ‘virtual void LAMMPS_NS::PairEAM::read_file(char*)’: ../pair_eam.cpp:470:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam.cpp:471:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam.cpp:473:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam.cpp: In member function ‘void LAMMPS_NS::PairEAM::grab(FILE*, int, double*)’: ../pair_eam.cpp:788:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_class2_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_viscous.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_tip4p_cut_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_respa_bin_newton.cpp ../pair_tip4p_cut_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 1; int = 1]’: ../pair_tip4p_cut_omp.cpp:393:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_tip4p_cut_omp.cpp:392:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_tip4p_cut_omp.cpp:317:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_cut_omp.cpp:313:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_cut_soft.cpp ../pair_tip4p_cut_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 1; int = 0]’: ../pair_tip4p_cut_omp.cpp:393:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_tip4p_cut_omp.cpp:392:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_tip4p_cut_omp.cpp:317:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_cut_omp.cpp:313:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_tip4p_cut_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 0; int = 1]’: ../pair_tip4p_cut_omp.cpp:393:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_tip4p_cut_omp.cpp:392:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_tip4p_cut_omp.cpp:317:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_cut_omp.cpp:313:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../npair_half_respa_bin_newton.cpp: In member function ‘virtual void LAMMPS_NS::NPairHalfRespaBinNewton::build(LAMMPS_NS::NeighList*)’: ../npair_half_respa_bin_newton.cpp:195:55: warning: ‘neighptr_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ^ ../npair_half_respa_bin_newton.cpp:176:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_respa_bin_newton.cpp:177:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_bin_newton.cpp:177:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_bin_newton.cpp:150:51: warning: ‘n_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ~~~~~~~~^~ In file included from ../neigh_list.h:18:0, from ../npair_half_respa_bin_newton.cpp:16: ../my_page.h:172:12: warning: ‘ipage_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] ndatum += n; ~~~~~~~^~~~ ../npair_half_respa_bin_newton.cpp:71:16: note: ‘ipage_middle’ was declared here MyPage *ipage_middle; ^~~~~~~~~~~~ ../npair_half_respa_bin_newton.cpp:220:28: warning: ‘firstneigh_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] firstneigh_middle[i] = neighptr_middle; ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ../npair_half_respa_bin_newton.cpp:221:26: warning: ‘numneigh_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] numneigh_middle[i] = n_middle; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../npair_half_respa_bin_newton.cpp:219:26: warning: ‘ilist_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] ilist_middle[inum] = i; ~~~~~~~~~~~~~~~~~~~^~~ ../pair_tip4p_cut_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 0; int = 0]’: ../pair_tip4p_cut_omp.cpp:393:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_tip4p_cut_omp.cpp:392:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_tip4p_cut_omp.cpp:317:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_cut_omp.cpp:313:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_coul_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulCutSoft::read_restart(FILE*)’: ../pair_coul_cut_soft.cpp:277:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_cut_soft.cpp:281:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_cut_soft.cpp:282:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulCutSoft::read_restart_settings(FILE*)’: ../pair_coul_cut_soft.cpp:311:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_cut_soft.cpp:312:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_cut_soft.cpp:314:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_cut_soft.cpp:315:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_cut_soft.cpp:316:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_cut_soft.cpp: In member function ‘virtual double LAMMPS_NS::PairCoulCutSoft::single(int, int, int, int, double, double, double, double&)’: ../pair_coul_cut_soft.cpp:364:13: warning: ‘denc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = force->qqrd2e * lam1[itype][jtype] * atom->q[i]*atom->q[j] / denc; ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tip4p_cut_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 0; int = 0; int = 0]’: ../pair_tip4p_cut_omp.cpp:313:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_tip4p_cut_omp.cpp:317:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_cut_omp.cpp:376:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_tip4p_cut_omp.cpp:372:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../info.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_wall_ees.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_gran_hooke.cpp ../info.cpp: In function ‘void print_columns(FILE*, std::vector >&)’: ../info.cpp:1102:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < styles.size(); ++i) { ~~^~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pppm_disp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_tip4p_long.cpp ../pair_tip4p_long.cpp: In member function ‘virtual void LAMMPS_NS::PairTIP4PLong::read_restart_settings(FILE*)’: ../pair_tip4p_long.cpp:476:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tip4p_long.cpp:477:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tip4p_long.cpp:478:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tip4p_long.cpp:479:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tip4p_long.cpp:480:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tip4p_long.cpp: In member function ‘virtual void LAMMPS_NS::PairTIP4PLong::compute(int, int)’: ../pair_tip4p_long.cpp:383:21: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~ ../pair_tip4p_long.cpp:383:21: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_tip4p_long.cpp:385:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_tip4p_long.cpp:378:24: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ~~~~~~~~~~~^~~~~ ../pair_tip4p_long.cpp:377:24: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ~~~~~~~~~~~^~~~~ ../pair_tip4p_long.cpp:305:18: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fH[0]; ^ ../pair_tip4p_long.cpp:301:18: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fH[0]; ^ ../pair_tip4p_long.cpp:385:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_charmm_coul_msm.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_full_multi_2d.cpp ../pair_lj_charmm_coul_msm.cpp: In member function ‘virtual double LAMMPS_NS::PairLJCharmmCoulMSM::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_charmm_coul_msm.cpp:524:37: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]); ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_charmm_coul_msm.cpp:516:28: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ ../pair_lj_charmm_coul_msm.cpp:516:40: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_msm.cpp:519:56: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_charmm_coul_msm.cpp:514:15: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*egamma; ~~~~~~~~^~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_msm.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulMSM::compute(int, int)’: ../pair_lj_charmm_coul_msm.cpp:217:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_charmm_coul_msm.cpp:212:21: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*egamma; ~~~~~~^~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_msm.cpp:221:19: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_msm.cpp:214:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_msm.cpp:214:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ ../pair_lj_charmm_coul_msm.cpp:221:44: warning: ‘jtype’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]); ^ ../pair_lj_charmm_coul_msm.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulMSM::compute_outer(int, int)’: ../pair_lj_charmm_coul_msm.cpp:388:64: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_charmm_coul_msm.cpp:415:25: warning: ‘fgamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcecoul = prefactor * fgamma; ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_msm.cpp:387:21: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*egamma; ~~~~~~^~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_msm.cpp:421:50: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = ptable[itable] + fraction*dptable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_msm.cpp:418:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = vtable[itable] + fraction*dvtable[itable]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_nsq_newtoff.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_multi_body_omp.cpp ../npair_half_nsq_newtoff.cpp: In member function ‘virtual void LAMMPS_NS::NPairHalfNsqNewtoff::build(LAMMPS_NS::NeighList*)’: ../npair_half_nsq_newtoff.cpp:104:33: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_nsq_newtoff.cpp:105:63: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_nsq_newtoff.cpp:105:46: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_nsq_newtoff.cpp:90:37: warning: ‘bitmask’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (includegroup && !(mask[j] & bitmask)) continue; ~~~~~~~~~^~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_sw.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_agni.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_ke_atom_eff.cpp ../pair_agni.cpp: In member function ‘virtual void LAMMPS_NS::PairAGNI::compute(int, int)’: ../pair_agni.cpp:223:34: warning: ‘delz’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (evflag) ev_tally_xyz_full(i,0.0,0.0,fxtmp,fytmp,fztmp,delx,dely,delz); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_agni.cpp:223:34: warning: ‘dely’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_agni.cpp:223:34: warning: ‘delx’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_agni.cpp: In member function ‘void LAMMPS_NS::PairAGNI::read_file(char*)’: ../pair_agni.cpp:463:70: warning: ‘wantdata’ may be used uninitialized in this function [-Wmaybe-uninitialized] } else if (params && (wantdata >=0) && (nwords == params[wantdata].numeta+3)) { ^ ../pair_agni.cpp:434:37: warning: ‘curparam’ may be used uninitialized in this function [-Wmaybe-uninitialized] int numtrain = params[curparam].numtrain; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_sdk_coul_long_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_dihedral.cpp In file included from ../pair_lj_sdk_coul_long_omp.cpp:23:0: ../lj_sdk_common.h:30:14: warning: ‘int LAMMPS_NS::LJSDKParms::find_lj_type(const char*, const char* const*)’ defined but not used [-Wunused-function] static int find_lj_type(const char *label, ^~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_fourier.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_vashishta.cpp ../dihedral_fourier.cpp: In member function ‘virtual void LAMMPS_NS::DihedralFourier::read_restart(FILE*)’: ../dihedral_fourier.cpp:371:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_fourier.cpp:386:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(k[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_fourier.cpp:387:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(multiplicity[i],sizeof(int),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_fourier.cpp:388:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(shift[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_srd.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pppm.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../sna.cpp ../fix_srd.cpp: In member function ‘void LAMMPS_NS::FixSRD::big_static()’: ../fix_srd.cpp:2968:25: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] c1 = tbonus[tri[i]].c1; ^ ../fix_srd.cpp:2956:30: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] length = lbonus[line[i]].length; ^ ../fix_srd.cpp:2940:34: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ^ ../fix_srd.cpp: In member function ‘void LAMMPS_NS::FixSRD::big_dynamic()’: ../fix_srd.cpp:3051:30: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertia = tbonus[tri[i]].inertia; ^ ../fix_srd.cpp:3038:40: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] biglist[k].theta = lbonus[line[i]].theta; ^ ../fix_srd.cpp:3026:34: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ^ ../fix_srd.cpp: In member function ‘void LAMMPS_NS::FixSRD::reset_velocities()’: ../fix_srd.cpp:1019:33: warning: ‘dof_tstat’ may be used uninitialized in this function [-Wmaybe-uninitialized] tbin = vbin[i].value[0]/(n-dof_tstat) * tfactor; ~~^~~~~~~~~~~ ../fix_srd.cpp: In member function ‘void LAMMPS_NS::FixSRD::parameterize()’: ../fix_srd.cpp:2551:22: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] AtomVecTri::Bonus *tbonus; ^~~~~~ ../fix_srd.cpp:2705:41: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] double length = lbonus[line[i]].length; ^ ../fix_srd.cpp:2681:46: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] double *shape = ebonus[ellipsoid[i]].shape; ^ ../fix_srd.cpp: In member function ‘void LAMMPS_NS::FixSRD::collisions_multi()’: ../fix_srd.cpp:1551:15: warning: ‘normfirst[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] norm[0] = normfirst[0]; ~~~~~~~~^~~~~~~~~~~~~~ ../fix_srd.cpp:1549:17: warning: ‘xbcollfirst[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] xbcoll[1] = xbcollfirst[1]; ~~~~~~~~~~^~~~~~~~~~~~~~~~ ../fix_srd.cpp:1548:17: warning: ‘xbcollfirst[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] xbcoll[0] = xbcollfirst[0]; ~~~~~~~~~~^~~~~~~~~~~~~~~~ ../fix_srd.cpp:1547:17: warning: ‘xscollfirst[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] xscoll[2] = xscollfirst[2]; ~~~~~~~~~~^~~~~~~~~~~~~~~~ ../fix_srd.cpp:1546:17: warning: ‘xscollfirst[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] xscoll[1] = xscollfirst[1]; ~~~~~~~~~~^~~~~~~~~~~~~~~~ ../fix_srd.cpp:1545:17: warning: ‘xscollfirst[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] xscoll[0] = xscollfirst[0]; ~~~~~~~~~~^~~~~~~~~~~~~~~~ ../fix_srd.cpp:1550:17: warning: ‘xbcollfirst[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] xbcoll[2] = xbcollfirst[2]; ~~~~~~~~~~^~~~~~~~~~~~~~~~ ../fix_srd.cpp:1553:15: warning: ‘normfirst[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] norm[2] = normfirst[2]; ~~~~~~~~^~~~~~~~~~~~~~ ../fix_srd.cpp:1552:15: warning: ‘normfirst[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] norm[1] = normfirst[1]; ~~~~~~~~^~~~~~~~~~~~~~ ../fix_srd.cpp:1559:9: warning: ‘typefirst’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (type != WALL) noslip(v[i],v[j],x[j],big,-1,xscoll,norm,vsnew); ^~ ../fix_srd.cpp:1560:20: warning: ‘jfirst’ may be used uninitialized in this function [-Wmaybe-uninitialized] else noslip(v[i],NULL,x[j],big,j,xscoll,norm,vsnew); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_diel_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_bond_local.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_quadratic_omp.cpp ../compute_bond_local.cpp: In member function ‘int LAMMPS_NS::ComputeBondLocal::compute_bonds(int)’: ../compute_bond_local.cpp:315:20: warning: ‘engrot’ may be used uninitialized in this function [-Wmaybe-uninitialized] ptr[n] = engrot; ~~~~~~~^~~~~~~~ ../compute_bond_local.cpp:312:20: warning: ‘engvib’ may be used uninitialized in this function [-Wmaybe-uninitialized] ptr[n] = engvib; ~~~~~~~^~~~~~~~ ../compute_bond_local.cpp:318:20: warning: ‘engtrans’ may be used uninitialized in this function [-Wmaybe-uninitialized] ptr[n] = engtrans; ~~~~~~~^~~~~~~~~~ ../compute_bond_local.cpp:306:20: warning: ‘engpot’ may be used uninitialized in this function [-Wmaybe-uninitialized] ptr[n] = engpot; ~~~~~~~^~~~~~~~ ../compute_bond_local.cpp:151:18: warning: ‘omegasq’ may be used uninitialized in this function [-Wmaybe-uninitialized] double inertia,omegasq; ^~~~~~~ ../compute_bond_local.cpp:324:20: warning: ‘vvib’ may be used uninitialized in this function [-Wmaybe-uninitialized] ptr[n] = vvib; ~~~~~~~^~~~~~ ../compute_bond_local.cpp:201:47: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] btype = onemols[imol]->bond_type[iatom][i]; ^ ../compute_bond_local.cpp:201:29: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] btype = onemols[imol]->bond_type[iatom][i]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_spherical.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_forces_omp.cpp ../dihedral_spherical.cpp: In member function ‘virtual void LAMMPS_NS::DihedralSpherical::read_restart(FILE*)’: ../dihedral_spherical.cpp:759:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_spherical.cpp:779:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(Ccoeff[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_spherical.cpp:780:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(phi_mult[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_spherical.cpp:781:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(phi_shift[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_spherical.cpp:782:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(phi_offset[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_spherical.cpp:783:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(theta1_mult[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_spherical.cpp:784:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(theta1_shift[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_spherical.cpp:785:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(theta1_offset[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_spherical.cpp:786:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(theta2_mult[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_spherical.cpp:787:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(theta2_shift[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_spherical.cpp:788:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(theta2_offset[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_dipole_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_class2.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_full_ghost_bin_3d.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_qeq_dynamic.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_born_coul_msm_omp.cpp ../pair_lj_class2.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2::read_restart(FILE*)’: ../pair_lj_class2.cpp:310:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2.cpp:314:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2.cpp:315:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2.cpp:316:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2::read_restart_settings(FILE*)’: ../pair_lj_class2.cpp:345:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2.cpp:346:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2.cpp:347:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2.cpp:348:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_half_bin_3d_newton.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_soft_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_filter_corotate.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_full_bin_2d.cpp ../pair_born_coul_msm_omp.cpp: In member function ‘void LAMMPS_NS::PairBornCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_born_coul_msm_omp.cpp:167:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_born_coul_msm_omp.cpp:166:13: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*egamma; ^~~~~ ../pair_born_coul_msm_omp.cpp:170:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv ../pair_born_coul_msm_omp.cpp:170:59: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv ../pair_born_coul_msm_omp.cpp: In member function ‘void LAMMPS_NS::PairBornCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_born_coul_msm_omp.cpp:166:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*egamma; ^~~~~ ../pair_born_coul_msm_omp.cpp:166:13: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_born_coul_msm_omp.cpp:170:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv ../pair_born_coul_msm_omp.cpp:170:59: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_streitz.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../create_bonds.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_ave_histo_weight.cpp ../fix_ave_histo_weight.cpp: In member function ‘virtual void LAMMPS_NS::FixAveHistoWeight::end_of_step()’: ../fix_ave_histo_weight.cpp:499:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ ../create_bonds.cpp: In member function ‘void LAMMPS_NS::CreateBonds::command(int, char**)’: ../create_bonds.cpp:129:10: warning: ‘style’ may be used uninitialized in this function [-Wmaybe-uninitialized] } else if (style == SANGLE) { ^~ ../create_bonds.cpp:111:18: warning: ‘iarg’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (iarg+2 > narg) error->all(FLERR,"Illegal create_bonds command"); ~~~~~~~^~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_ffield.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../manifold_thylakoid_shared.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper_harmonic_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_full_bin_ghost_omp.cpp ../reaxc_ffield.cpp: In function ‘char Read_Force_Field(FILE*, reax_interaction*, control_params*)’: ../reaxc_ffield.cpp:54:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( s, MAX_LINE, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:57:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( s, MAX_LINE, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:76:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAX_LINE,fp); ~~~~~^~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:88:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( s, MAX_LINE, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:93:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAX_LINE,fp); ~~~~~^~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:94:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAX_LINE,fp); ~~~~~^~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:95:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAX_LINE,fp); ~~~~~^~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:157:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( s, MAX_LINE, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:174:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( s, MAX_LINE, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:187:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( s, MAX_LINE, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:200:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( s, MAX_LINE, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:221:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( s, MAX_LINE, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:301:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAX_LINE,fp); ~~~~~^~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:306:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAX_LINE,fp); ~~~~~^~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:310:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAX_LINE,fp); ~~~~~^~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:337:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAX_LINE,fp); ~~~~~^~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:458:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAX_LINE,fp); ~~~~~^~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:463:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAX_LINE,fp); ~~~~~^~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:519:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( s, MAX_LINE, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:524:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAX_LINE,fp); ~~~~~^~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:577:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( s, MAX_LINE, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:582:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( s, MAX_LINE, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:649:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( s, MAX_LINE, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~ ../reaxc_ffield.cpp:659:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( s, MAX_LINE, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~ ../npair_full_bin_ghost_omp.cpp: In function ‘_ZN9LAMMPS_NS20NPairFullBinGhostOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_full_bin_ghost_omp.cpp:119:67: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_full_bin_ghost_omp.cpp:51:43: note: ‘iatom’ was declared here int i,j,k,n,itype,jtype,ibin,which,imol,iatom; ^~~~~ ../npair_full_bin_ghost_omp.cpp:118:37: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_full_bin_ghost_omp.cpp:52:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_full_bin_ghost_omp.cpp:119:50: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_full_bin_ghost_omp.cpp:51:38: note: ‘imol’ was declared here int i,j,k,n,itype,jtype,ibin,which,imol,iatom; ^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_meso.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nphug.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../lattice.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_temp_profile.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_drag.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_traj.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_diel.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_ke_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../respa.cpp ../reaxc_traj.cpp: In function ‘int Init_Traj(reax_system*, control_params*, output_controls*, mpi_datatypes*, char*)’: ../reaxc_traj.cpp:314:5: warning: ‘.trj’ directive writing 4 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] int Init_Traj( reax_system *system, control_params *control, ^~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from ../lammps.h:17, from ../pointers.h:26, from ../pair.h:17, from ../pair_reaxc.h:33, from ../reaxc_traj.cpp:27: /usr/include/x86_64-linux-gnu/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024 __bos (__s), __fmt, __va_arg_pack ()); ^ ../pair_coul_diel.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulDiel::read_restart(FILE*)’: ../pair_coul_diel.cpp:288:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rme[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_diel.cpp:289:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigmae[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_diel.cpp:290:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_diel.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulDiel::read_restart_settings(FILE*)’: ../pair_coul_diel.cpp:317:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_diel.cpp:318:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_diel.cpp:319:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../ntopo_bond_all.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nvt_sllod_eff.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper_umbrella.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_wall_piston.cpp ../improper_umbrella.cpp: In member function ‘virtual void LAMMPS_NS::ImproperUmbrella::read_restart(FILE*)’: ../improper_umbrella.cpp:321:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kw[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_umbrella.cpp:322:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&w0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_umbrella.cpp:323:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_forces.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_eam_alloy_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_wall_gran.cpp ../fix_wall_piston.cpp: In member function ‘virtual void LAMMPS_NS::FixWallPiston::post_integrate()’: ../fix_wall_piston.cpp:289:36: warning: ‘zlo’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (zloflag && x[i][2] < zlo - roughoff) { ~~~~^~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_msm.cpp ../pair_eam_alloy_omp.cpp: In member function ‘virtual void LAMMPS_NS::PairEAMAlloyOMP::read_file(char*)’: ../pair_eam_alloy_omp.cpp:139:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_alloy_omp.cpp:140:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_alloy_omp.cpp:141:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_alloy_omp.cpp:142:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_alloy_omp.cpp:167:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_alloy_omp.cpp:187:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../fix_wall_gran.cpp: In member function ‘void LAMMPS_NS::FixWallGran::bonded_history(double, double, double, double, double*, double, double*, double*, double*, double*, double, double, double*)’: ../fix_wall_gran.cpp:797:56: warning: variable ‘vrlmaginv’ set but not used [-Wunused-but-set-variable] double relrot1,relrot2,relrot3,vrl1,vrl2,vrl3,vrlmag,vrlmaginv; ^~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../region_block.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_langevin_drude.cpp ../pair_coul_msm.cpp: In member function ‘virtual double LAMMPS_NS::PairCoulMSM::single(int, int, int, int, double, double, double, double&)’: ../pair_coul_msm.cpp:207:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*egamma; ~~~~~~~~^~~~~~~~~~~~~~~~~~ ../pair_coul_msm.cpp:209:26: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ ../pair_coul_msm.cpp:209:38: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_coul_msm.cpp:207:13: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*egamma; ~~~~~~~~^~~~~~~~~~~~~~~~~~ ../pair_coul_msm.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulMSM::compute(int, int)’: ../pair_coul_msm.cpp:147:19: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*egamma; ~~~~~~^~~~~~~~~~~~~~~~~~ ../pair_coul_msm.cpp:147:19: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_coul_msm.cpp:149:46: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_coul_msm.cpp:149:34: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_npt_asphere_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_oxdna_coaxstk.cpp ../region_block.cpp: In member function ‘virtual int LAMMPS_NS::RegBlock::surface_exterior(double*, double)’: ../region_block.cpp:336:14: warning: ‘zp’ may be used uninitialized in this function [-Wmaybe-uninitialized] add_contact(0,x,xp,yp,zp); ~~~~~~~~~~~^~~~~~~~~~~~~~ ../region_block.cpp:336:14: warning: ‘yp’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../region_block.cpp:336:14: warning: ‘xp’ may be used uninitialized in this function [-Wmaybe-uninitialized] mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dump_cfg.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nvt_uef.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_wall_reflect.cpp ../pair_oxdna_coaxstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaCoaxstk::init_style()’: ../pair_oxdna_coaxstk.cpp:831:7: warning: variable ‘irequest’ set but not used [-Wunused-but-set-variable] int irequest; ^~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_dsf_omp.cpp ../pair_oxdna_coaxstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaCoaxstk::read_restart(FILE*)’: ../pair_oxdna_coaxstk.cpp:991:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:996:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k_cxst[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:997:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:998:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:999:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1000:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1001:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1002:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1003:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1004:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1006:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1007:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst1_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1008:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1009:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1010:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1012:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1013:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1014:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1015:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1016:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1018:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1019:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst5_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1020:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst5_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1021:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1022:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst5_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1024:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1025:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst6_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1026:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst6_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1027:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1028:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst6_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1030:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst3p[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1031:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_cxst3p_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1032:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst3p[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1033:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_cxst3p_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1034:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst4p[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1035:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_cxst4p_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1036:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst4p[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1037:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_cxst4p_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaCoaxstk::read_restart_settings(FILE*)’: ../pair_oxdna_coaxstk.cpp:1107:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1108:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_coaxstk.cpp:1109:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_init_md_omp.cpp ../fix_wall_reflect.cpp: In constructor ‘LAMMPS_NS::FixWallReflect::FixWallReflect(LAMMPS_NS::LAMMPS*, int, char**)’: ../fix_wall_reflect.cpp:68:24: warning: ‘newwall’ may be used uninitialized in this function [-Wmaybe-uninitialized] wallwhich[nwall] = newwall; ~~~~~~~~~~~~~~~~~^~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_dipole.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_halt.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_omega_chunk.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_multi_lucy_rx.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_grem.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_bin_newton_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_edip_multi.cpp ../pair_multi_lucy_rx.cpp: In member function ‘void LAMMPS_NS::PairMultiLucyRX::read_table(LAMMPS_NS::PairMultiLucyRX::Table*, char*, char*)’: ../pair_multi_lucy_rx.cpp:511:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ ../pair_multi_lucy_rx.cpp:513:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_multi_lucy_rx.cpp:514:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_multi_lucy_rx.cpp:520:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_multi_lucy_rx.cpp:533:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_multi_lucy_rx.cpp:535:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_multi_lucy_rx.cpp: In member function ‘virtual void LAMMPS_NS::PairMultiLucyRX::read_restart_settings(FILE*)’: ../pair_multi_lucy_rx.cpp:854:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_multi_lucy_rx.cpp:855:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../npair_half_bin_newton_omp.cpp: In function ‘_ZN9LAMMPS_NS21NPairHalfBinNewtonOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_half_bin_newton_omp.cpp:150:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_bin_newton_omp.cpp:50:43: note: ‘iatom’ was declared here int i,j,k,n,itype,jtype,ibin,which,imol,iatom; ^~~~~ ../npair_half_bin_newton_omp.cpp:149:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_bin_newton_omp.cpp:51:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_half_bin_newton_omp.cpp:150:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_bin_newton_omp.cpp:50:38: note: ‘imol’ was declared here int i,j,k,n,itype,jtype,ibin,which,imol,iatom; ^~~~ ../pair_multi_lucy_rx.cpp: In member function ‘void LAMMPS_NS::PairMultiLucyRX::getMixingWeights(int, double&, double&, double&, double&)’: ../pair_multi_lucy_rx.cpp:1016:16: warning: ‘nMolecules2’ may be used uninitialized in this function [-Wmaybe-uninitialized] mixWtSite2 = nMolecules2; ~~~~~~~~~~~^~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_tri.cpp ../pair_multi_lucy_rx.cpp:1015:19: warning: ‘nMoleculesOld2’ may be used uninitialized in this function [-Wmaybe-uninitialized] mixWtSite2old = nMoleculesOld2; ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_multi_lucy_rx.cpp:1011:16: warning: ‘fraction2’ may be used uninitialized in this function [-Wmaybe-uninitialized] mixWtSite2 = fraction2; ~~~~~~~~~~~^~~~~~~~~~~ ../pair_multi_lucy_rx.cpp:1010:19: warning: ‘fractionOld2’ may be used uninitialized in this function [-Wmaybe-uninitialized] mixWtSite2old = fractionOld2; ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fft3d.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_gromos.cpp ../fft3d.cpp: In function ‘void fft_3d(double (*)[2], double (*)[2], int, fft_plan_3d*)’: ../fft3d.cpp:69:9: warning: variable ‘total’ set but not used [-Wunused-but-set-variable] int i,total,length,offset,num; ^~~~~ ../fft3d.cpp:69:15: warning: variable ‘length’ set but not used [-Wunused-but-set-variable] int i,total,length,offset,num; ^~~~~~ ../fft3d.cpp:69:22: warning: unused variable ‘offset’ [-Wunused-variable] int i,total,length,offset,num; ^~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_nsq_newton_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid_npt_omp.cpp ../bond_gromos.cpp: In member function ‘virtual void LAMMPS_NS::BondGromos::read_restart(FILE*)’: ../bond_gromos.cpp:172:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_gromos.cpp:173:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_cdeam_omp.cpp ../npair_half_nsq_newton_omp.cpp: In function ‘_ZN9LAMMPS_NS21NPairHalfNsqNewtonOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_half_nsq_newton_omp.cpp:131:63: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_nsq_newton_omp.cpp:51:46: note: ‘iatom’ was declared here int i,j,n,itype,jtype,itag,jtag,which,imol,iatom; ^~~~~ ../npair_half_nsq_newton_omp.cpp:130:33: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_nsq_newton_omp.cpp:52:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_half_nsq_newton_omp.cpp:131:46: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_nsq_newton_omp.cpp:51:41: note: ‘imol’ was declared here int i,j,n,itype,jtype,itag,jtag,which,imol,iatom; ^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_thermal_conductivity.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_coul_long_omp.cpp ../pair_lj_cut_coul_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_cut_coul_long_omp.cpp:188:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_cut_coul_long_omp.cpp:193:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_coul_long_omp.cpp:197:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ../pair_lj_cut_coul_long_omp.cpp:190:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut_coul_long_omp.cpp:190:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_cdeam_omp.cpp: In member function ‘void LAMMPS_NS::PairCDEAMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CDEAMVERSION = 1]’: ../pair_cdeam_omp.cpp:483:24: warning: ‘D_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair += D_i * rhojp * t1; ~~~~^~~~~~~ ../pair_lj_cut_coul_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_cut_coul_long_omp.cpp:188:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_cut_coul_long_omp.cpp:193:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_coul_long_omp.cpp:197:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_omp.cpp:190:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut_coul_long_omp.cpp:190:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_srp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_gran_hooke_omp.cpp ../pair_cdeam_omp.cpp: In member function ‘void LAMMPS_NS::PairCDEAMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CDEAMVERSION = 1]’: ../pair_cdeam_omp.cpp:483:24: warning: ‘D_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair += D_i * rhojp * t1; ~~~~^~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_agni_omp.cpp ../pair_cdeam_omp.cpp: In member function ‘void LAMMPS_NS::PairCDEAMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CDEAMVERSION = 1]’: ../pair_cdeam_omp.cpp:483:24: warning: ‘D_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair += D_i * rhojp * t1; ~~~~^~~~~~~ ../pair_cdeam_omp.cpp: In member function ‘void LAMMPS_NS::PairCDEAMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CDEAMVERSION = 1]’: ../pair_cdeam_omp.cpp:483:24: warning: ‘D_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair += D_i * rhojp * t1; ~~~~^~~~~~~ ../pair_cdeam_omp.cpp: In member function ‘void LAMMPS_NS::PairCDEAMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CDEAMVERSION = 1]’: ../pair_cdeam_omp.cpp:483:24: warning: ‘D_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair += D_i * rhojp * t1; ~~~~^~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_half_multi_2d_newtoff.cpp ../pair_agni_omp.cpp: In member function ‘void LAMMPS_NS::PairAGNIOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1]’: ../pair_agni_omp.cpp:161:38: warning: ‘delz’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_xyz_full_thr(this,i,0.0,0.0, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ fxtmp,fytmp,fztmp, ~~~~~~~~~~~~~~~~~~ delx,dely,delz,thr); ~~~~~~~~~~~~~~~~~~~ ../pair_agni_omp.cpp:161:38: warning: ‘dely’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_agni_omp.cpp:161:38: warning: ‘delx’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_cdeam_omp.cpp: In member function ‘void LAMMPS_NS::PairCDEAMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CDEAMVERSION = 1]’: ../pair_cdeam_omp.cpp:483:24: warning: ‘D_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair += D_i * rhojp * t1; ~~~~^~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_gld.cpp ../pair_cdeam_omp.cpp: In member function ‘void LAMMPS_NS::PairCDEAMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CDEAMVERSION = 2]’: ../pair_cdeam_omp.cpp:483:24: warning: ‘D_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair += D_i * rhojp * t1; ~~~~^~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_quartic_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../variable.cpp ../pair_cdeam_omp.cpp: In member function ‘void LAMMPS_NS::PairCDEAMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CDEAMVERSION = 2]’: ../pair_cdeam_omp.cpp:483:24: warning: ‘D_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair += D_i * rhojp * t1; ~~~~^~~~~~~ ../pair_cdeam_omp.cpp: In member function ‘void LAMMPS_NS::PairCDEAMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CDEAMVERSION = 2]’: ../pair_cdeam_omp.cpp:483:24: warning: ‘D_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair += D_i * rhojp * t1; ~~~~^~~~~~~ ../pair_cdeam_omp.cpp: In member function ‘void LAMMPS_NS::PairCDEAMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CDEAMVERSION = 2]’: ../pair_cdeam_omp.cpp:483:24: warning: ‘D_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair += D_i * rhojp * t1; ~~~~^~~~~~~ ../variable.cpp: In member function ‘int LAMMPS_NS::Variable::next(int, char**)’: ../variable.cpp:671:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d",&nextindex); ~~~~~~^~~~~~~~~~~~~~~~~~~~ ../pair_cdeam_omp.cpp: In member function ‘void LAMMPS_NS::PairCDEAMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CDEAMVERSION = 2]’: ../pair_cdeam_omp.cpp:483:24: warning: ‘D_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair += D_i * rhojp * t1; ~~~~^~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_recenter.cpp ../pair_cdeam_omp.cpp: In member function ‘void LAMMPS_NS::PairCDEAMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CDEAMVERSION = 2]’: ../pair_cdeam_omp.cpp:483:24: warning: ‘D_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair += D_i * rhojp * t1; ~~~~^~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_wall_lj93.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_dsf.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_init_md.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_zbl_omp.cpp ../pair_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulDSF::read_restart(FILE*)’: ../pair_coul_dsf.cpp:257:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulDSF::read_restart_settings(FILE*)’: ../pair_coul_dsf.cpp:281:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_dsf.cpp:282:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_dsf.cpp:283:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_dsf.cpp:284:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../variable.cpp: In member function ‘int LAMMPS_NS::Variable::group_function(char*, char*, LAMMPS_NS::Variable::Tree**, LAMMPS_NS::Variable::Tree**, int&, double*, int&, int)’: ../variable.cpp:3878:20: warning: ‘value’ may be used uninitialized in this function [-Wmaybe-uninitialized] newtree->value = value; ~~~~~~~~~~~~~~~^~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_bond_swap.cpp ../variable.cpp: In member function ‘double LAMMPS_NS::Variable::evaluate_boolean(char*)’: ../variable.cpp:4631:7: warning: ‘op’ may be used uninitialized in this function [-Wmaybe-uninitialized] int op,opprevious,flag1,flag2; ^~ ../pair_zbl_omp.cpp: In member function ‘void LAMMPS_NS::PairZBLOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_zbl_omp.cpp:149:41: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] (sw3i[jtype] + sw4i[jtype]*t); mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_nb3b_harmonic_omp.cpp ../pair_zbl_omp.cpp: In member function ‘void LAMMPS_NS::PairZBLOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_zbl_omp.cpp:149:41: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] (sw3i[jtype] + sw4i[jtype]*t); ../variable.cpp: In member function ‘int LAMMPS_NS::Variable::special_function(char*, char*, LAMMPS_NS::Variable::Tree**, LAMMPS_NS::Variable::Tree**, int&, double*, int&, int)’: ../variable.cpp:4091:25: warning: ‘nvec’ may be used uninitialized in this function [-Wmaybe-uninitialized] for (int i = 0; i < nvec; i++) { ~~^~~~~~ ../variable.cpp:4060:5: warning: ‘method’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (method == XMAX) value = -BIG; ^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_gcmc.cpp ../variable.cpp: In member function ‘double LAMMPS_NS::Variable::evaluate(char*, LAMMPS_NS::Variable::Tree**, int)’: ../variable.cpp:1170:7: warning: ‘op’ may be used uninitialized in this function [-Wmaybe-uninitialized] int op,opprevious; ^~ ../fix_bond_swap.cpp: In member function ‘virtual void LAMMPS_NS::FixBondSwap::post_integrate()’: ../fix_bond_swap.cpp:498:39: warning: ‘jlast’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (jlast >= 0) jlasttag = tag[jlast]; ^ ../fix_bond_swap.cpp:496:39: warning: ‘jprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (jprev >= 0) jprevtag = tag[jprev]; ^ ../fix_bond_swap.cpp:202:25: warning: ‘jnext’ may be used uninitialized in this function [-Wmaybe-uninitialized] int inext,iprev,ilast,jnext,jprev,jlast,ibond,iangle,jbond,jangle; ^~~~~ ../fix_bond_swap.cpp:493:39: warning: ‘ilast’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (ilast >= 0) ilasttag = tag[ilast]; ^ ../fix_bond_swap.cpp:491:39: warning: ‘iprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (iprev >= 0) iprevtag = tag[iprev]; ^ ../fix_bond_swap.cpp:202:7: warning: ‘inext’ may be used uninitialized in this function [-Wmaybe-uninitialized] int inext,iprev,ilast,jnext,jprev,jlast,ibond,iangle,jbond,jangle; ^~~~~ ../fix_bond_swap.cpp:203:64: warning: ‘jnextangletype’ may be used uninitialized in this function [-Wmaybe-uninitialized] int ibondtype,jbondtype,iangletype,inextangletype,jangletype,jnextangletype; ^~~~~~~~~~~~~~ ../fix_bond_swap.cpp:203:53: warning: ‘jangletype’ may be used uninitialized in this function [-Wmaybe-uninitialized] int ibondtype,jbondtype,iangletype,inextangletype,jangletype,jnextangletype; ^~~~~~~~~~ ../fix_bond_swap.cpp:203:38: warning: ‘inextangletype’ may be used uninitialized in this function [-Wmaybe-uninitialized] int ibondtype,jbondtype,iangletype,inextangletype,jangletype,jnextangletype; ^~~~~~~~~~~~~~ ../fix_bond_swap.cpp:203:27: warning: ‘iangletype’ may be used uninitialized in this function [-Wmaybe-uninitialized] int ibondtype,jbondtype,iangletype,inextangletype,jangletype,jnextangletype; ^~~~~~~~~~ ../fix_bond_swap.cpp:457:37: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized] for (jbond = 0; jbond < num_bond[j]; jbond++) ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_beck.cpp ../variable.cpp: In member function ‘void LAMMPS_NS::Variable::compute_atom(int, int, double*, int, int)’: ../variable.cpp:993:53: warning: ‘vstore’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (mask[i] & groupbit) result[m] = vstore[i]; ~~~~~~~~^ ../variable.cpp: In member function ‘int LAMMPS_NS::Variable::math_function(char*, char*, LAMMPS_NS::Variable::Tree**, LAMMPS_NS::Variable::Tree**, int&, double*, int&, int)’: ../variable.cpp:3407:29: warning: ‘newtree’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (tree) newtree->type = ACOS; ~~~~~~~~~~~~~~^~~~~~ ../variable.cpp:3422:39: warning: ‘value2’ may be used uninitialized in this function [-Wmaybe-uninitialized] else argstack[nargstack++] = atan2(value1,value2); ~~~~~^~~~~~~~~~~~~~~ ../variable.cpp:3347:35: warning: ‘value1’ may be used uninitialized in this function [-Wmaybe-uninitialized] argstack[nargstack++] = sqrt(value1); ~~~~^~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_io_tools.cpp ../variable.cpp: In member function ‘void LAMMPS_NS::Variable::set(int, char**)’: ../variable.cpp:185:9: warning: ‘nfirst’ may be used uninitialized in this function [-Wmaybe-uninitialized] int nfirst,nlast; ^~~~~~ ../variable.cpp:206:15: warning: ‘nlast’ may be used uninitialized in this function [-Wmaybe-uninitialized] num[nvar] = nlast; ~~~~~~~~~~^~~~~~~ ../pair_beck.cpp: In member function ‘virtual void LAMMPS_NS::PairBeck::read_restart(FILE*)’: ../pair_beck.cpp:282:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_beck.cpp:286:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&AA[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_beck.cpp:287:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&BB[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_beck.cpp:288:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aa[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_beck.cpp:289:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_beck.cpp:290:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&beta[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_beck.cpp:291:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_beck.cpp: In member function ‘virtual void LAMMPS_NS::PairBeck::read_restart_settings(FILE*)’: ../pair_beck.cpp:321:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_beck.cpp:322:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../fix_gcmc.cpp: In member function ‘double LAMMPS_NS::FixGCMC::energy_full()’: ../fix_gcmc.cpp:2288:11: warning: ‘imolecule’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (imolecule == molecule[j]) continue; ^~ ../reaxc_io_tools.cpp: In function ‘int Init_Output_Files(reax_system*, control_params*, output_controls*, mpi_datatypes*, char*)’: ../reaxc_io_tools.cpp:37:5: warning: ‘.pot’ directive writing 4 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] int Init_Output_Files( reax_system *system, control_params *control, ^~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../irregular.cpp In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from ../lammps.h:17, from ../pointers.h:26, from ../pair.h:17, from ../pair_reaxc.h:33, from ../reaxc_io_tools.cpp:27: /usr/include/x86_64-linux-gnu/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024 __bos (__s), __fmt, __va_arg_pack ()); ^ ../reaxc_io_tools.cpp:37:5: warning: ‘.prs’ directive writing 4 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] int Init_Output_Files( reax_system *system, control_params *control, ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from ../lammps.h:17, from ../pointers.h:26, from ../pair.h:17, from ../pair_reaxc.h:33, from ../reaxc_io_tools.cpp:27: /usr/include/x86_64-linux-gnu/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 5 and 1028 bytes into a destination of size 1024 __bos (__s), __fmt, __va_arg_pack ()); ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_wall_lj1043.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_npt_eff.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_pair.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_opls_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid_npt.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_morse_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_peri_pmb_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_cdeam.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../output.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_half_bin_2d_newton.cpp ../pair_cdeam.cpp: In member function ‘virtual void LAMMPS_NS::PairCDEAM::compute(int, int)’: ../pair_cdeam.cpp:366:54: warning: ‘D_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair += D_i * rhojp * t1; ~~~~^~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_half_bin_2d_newton_tri.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_gromacs_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_oxdna2_fene.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../neigh_request.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_wall_gran_region.cpp ../pair_lj_gromacs_omp.cpp: In member function ‘void LAMMPS_NS::PairLJGromacsOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_gromacs_omp.cpp:148:71: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] eswitch = t*t*t*(ljsw3[itype][jtype] + ljsw4[itype][jtype]*t); ../pair_lj_gromacs_omp.cpp: In member function ‘void LAMMPS_NS::PairLJGromacsOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_gromacs_omp.cpp:148:71: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] eswitch = t*t*t*(ljsw3[itype][jtype] + ljsw4[itype][jtype]*t); mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_eim_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_eam_opt.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_table_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_table_omp.cpp ../pair_table_omp.cpp: In member function ‘void LAMMPS_NS::PairTableOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_table_omp.cpp:190:47: warning: ‘b’ may be used uninitialized in this function [-Wmaybe-uninitialized] ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) * ~~~^~ ../pair_table_omp.cpp:189:23: warning: ‘a’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a * tb->e[itable] + b * tb->e[itable+1] + ../pair_table_omp.cpp:187:45: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = tb->e[itable] + fraction*tb->de[itable]; ../pair_table_omp.cpp: In member function ‘void LAMMPS_NS::PairTableOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_table_omp.cpp:190:47: warning: ‘b’ may be used uninitialized in this function [-Wmaybe-uninitialized] ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) * ~~~^~ ../pair_table_omp.cpp:189:23: warning: ‘a’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a * tb->e[itable] + b * tb->e[itable+1] + ../pair_table_omp.cpp:187:45: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = tb->e[itable] + fraction*tb->de[itable]; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_oxdna2_excv.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lubricate_poly.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_nm_cut_coul_long_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_nb3b_harmonic.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../finish.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../min_fire.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_gravity.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../ewald_omp.cpp ../finish.cpp: In member function ‘void LAMMPS_NS::Finish::end(int)’: ../finish.cpp:776:9: warning: ‘nneighfull’ may be used uninitialized in this function [-Wmaybe-uninitialized] tmp = MAX(nneigh,nneighfull); ../finish.cpp:776:9: warning: ‘nneigh’ may be used uninitialized in this function [-Wmaybe-uninitialized] mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_quartic.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_opls.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_morse.cpp ../bond_quartic.cpp: In member function ‘virtual void LAMMPS_NS::BondQuartic::read_restart(FILE*)’: ../bond_quartic.cpp:281:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_quartic.cpp:282:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b1[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_quartic.cpp:283:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b2[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_quartic.cpp:284:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rc[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_quartic.cpp:285:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&u0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_saed.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_peri_pmb.cpp ../dihedral_opls.cpp: In member function ‘virtual void LAMMPS_NS::DihedralOPLS::read_restart(FILE*)’: ../dihedral_opls.cpp:335:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_opls.cpp:336:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_opls.cpp:337:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_opls.cpp:338:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_morse.cpp: In member function ‘virtual void LAMMPS_NS::BondMorse::read_restart(FILE*)’: ../bond_morse.cpp:176:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_morse.cpp:177:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_morse.cpp:178:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../molecule.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../random_park.cpp ../pair_peri_pmb.cpp: In member function ‘virtual void LAMMPS_NS::PairPeriPMB::read_restart(FILE*)’: ../pair_peri_pmb.cpp:424:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_pmb.cpp:428:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kspring[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_pmb.cpp:429:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&s00[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_pmb.cpp:430:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_pmb.cpp:431:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_gran_hooke_history_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_exp6_rx.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_smooth_linear.cpp ../pair_exp6_rx.cpp: In member function ‘virtual void LAMMPS_NS::PairExp6rx::read_restart(FILE*)’: ../pair_exp6_rx.cpp:974:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_exp6_rx.cpp:978:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_exp6_rx.cpp: In member function ‘virtual void LAMMPS_NS::PairExp6rx::read_restart_settings(FILE*)’: ../pair_exp6_rx.cpp:1004:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_exp6_rx.cpp:1005:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_exp6_rx.cpp:1006:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_exp6_rx.cpp:1007:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_smooth_linear.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart(FILE*)’: ../pair_lj_smooth_linear.cpp:287:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_smooth_linear.cpp:291:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_smooth_linear.cpp:292:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_smooth_linear.cpp:293:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_smooth_linear.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart_settings(FILE*)’: ../pair_lj_smooth_linear.cpp:320:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_smooth_linear.cpp:321:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_coul_long_opt.cpp ../pair_exp6_rx.cpp: In member function ‘void LAMMPS_NS::PairExp6rx::getMixingWeights(int, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&) const’: ../pair_exp6_rx.cpp:1224:32: warning: ‘nMolecules2’ may be used uninitialized in this function [-Wmaybe-uninitialized] if(fraction2 < -MY_EPSILON || nMolecules2 < -MY_EPSILON){ ^ ../pair_exp6_rx.cpp:1238:35: warning: ‘nMoleculesOld2’ may be used uninitialized in this function [-Wmaybe-uninitialized] if(fractionOld2 < -MY_EPSILON || nMoleculesOld2 < -MY_EPSILON){ ^ ../pair_exp6_rx.cpp:1217:32: warning: ‘nMolecules1’ may be used uninitialized in this function [-Wmaybe-uninitialized] if(fraction1 < -MY_EPSILON || nMolecules1 < -MY_EPSILON){ ^ ../pair_exp6_rx.cpp:1231:35: warning: ‘nMoleculesOld1’ may be used uninitialized in this function [-Wmaybe-uninitialized] if(fractionOld1 < -MY_EPSILON || nMoleculesOld1 < -MY_EPSILON){ ^ ../pair_exp6_rx.cpp:1224:5: warning: ‘fraction2’ may be used uninitialized in this function [-Wmaybe-uninitialized] if(fraction2 < -MY_EPSILON || nMolecules2 < -MY_EPSILON){ ^~ ../pair_exp6_rx.cpp:1238:5: warning: ‘fractionOld2’ may be used uninitialized in this function [-Wmaybe-uninitialized] if(fractionOld2 < -MY_EPSILON || nMoleculesOld2 < -MY_EPSILON){ ^~ ../pair_exp6_rx.cpp:1217:5: warning: ‘fraction1’ may be used uninitialized in this function [-Wmaybe-uninitialized] if(fraction1 < -MY_EPSILON || nMolecules1 < -MY_EPSILON){ ^~ ../pair_exp6_rx.cpp:1231:5: warning: ‘fractionOld1’ may be used uninitialized in this function [-Wmaybe-uninitialized] if(fractionOld1 < -MY_EPSILON || nMoleculesOld1 < -MY_EPSILON){ ^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_saed_vtk.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut.cpp ../pair_lj_cut_coul_long_opt.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0]’: ../pair_lj_cut_coul_long_opt.cpp:176:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_cut_coul_long_opt.cpp:176:15: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_cut_coul_long_opt.cpp:185:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ../pair_lj_cut_coul_long_opt.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0]’: ../pair_lj_cut_coul_long_opt.cpp:176:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_cut_coul_long_opt.cpp:176:15: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_cut_coul_long_opt.cpp:185:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_gran_hertz_history.cpp ../pair_lj_cut_coul_long_opt.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1]’: ../pair_lj_cut_coul_long_opt.cpp:176:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_cut_coul_long_opt.cpp:181:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_coul_long_opt.cpp:185:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ../pair_lj_cut_coul_long_opt.cpp:178:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut_coul_long_opt.cpp:178:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCut::read_restart(FILE*)’: ../pair_lj_cut.cpp:606:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut.cpp:610:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut.cpp:611:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut.cpp:612:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCut::read_restart_settings(FILE*)’: ../pair_lj_cut.cpp:641:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut.cpp:642:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut.cpp:643:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut.cpp:644:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_opt.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1]’: ../pair_lj_cut_coul_long_opt.cpp:176:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_cut_coul_long_opt.cpp:181:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_coul_long_opt.cpp:185:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_opt.cpp:178:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut_coul_long_opt.cpp:178:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCut::compute_outer(int, int)’: ../pair_lj_cut.cpp:388:19: warning: ‘r2inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair = factor_lj*forcelj*r2inv; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut.cpp:391:29: warning: ‘fpair’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (evflag) ev_tally(i,j,nlocal,newton_pair, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ evdwl,0.0,fpair,delx,dely,delz); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_eim.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_table.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_size_nsq_newton.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_table.cpp ../pair_table.cpp: In member function ‘void LAMMPS_NS::PairTable::read_table(LAMMPS_NS::PairTable::Table*, char*, char*)’: ../pair_table.cpp:378:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ ../pair_table.cpp:380:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_table.cpp:381:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_table.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_table.cpp:415:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_eim.cpp: In member function ‘int LAMMPS_NS::PairEIM::grabpair(FILE*, int, int)’: ../pair_eim.cpp:971:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eim.cpp:975:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_table.cpp: In member function ‘virtual void LAMMPS_NS::PairTable::read_restart_settings(FILE*)’: ../pair_table.cpp:977:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_table.cpp:978:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_table.cpp:979:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ewaldflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_table.cpp:980:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&pppmflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_table.cpp:981:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&msmflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_table.cpp:982:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dispersionflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_table.cpp:983:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tip4pflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../npair_half_size_nsq_newton.cpp: In member function ‘virtual void LAMMPS_NS::NPairHalfSizeNsqNewton::build(LAMMPS_NS::NeighList*)’: ../npair_half_size_nsq_newton.cpp:82:37: warning: ‘bitmask’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (includegroup && !(mask[j] & bitmask)) continue; ~~~~~~~~~^~~~~~~~~~ ../pair_table.cpp: In member function ‘virtual double LAMMPS_NS::PairTable::single(int, int, int, int, double, double, double, double&)’: ../pair_table.cpp:1042:41: warning: ‘b’ may be used uninitialized in this function [-Wmaybe-uninitialized] ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) * tb->deltasq6; ~~~~~~^~~ ../pair_table.cpp:1041:13: warning: ‘a’ may be used uninitialized in this function [-Wmaybe-uninitialized] phi = a * tb->e[itable] + b * tb->e[itable+1] + ~~^~~~~~~~~~~~~~~ ../pair_table.cpp:1039:35: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] phi = tb->e[itable] + fraction*tb->de[itable]; ~~~~~~~~^~~~~~~~~~~~~~~ ../pair_table.cpp: In member function ‘virtual void LAMMPS_NS::PairTable::compute(int, int)’: ../pair_table.cpp:177:47: warning: ‘b’ may be used uninitialized in this function [-Wmaybe-uninitialized] ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) * ~~~^~ ../pair_table.cpp:176:23: warning: ‘a’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a * tb->e[itable] + b * tb->e[itable+1] + ~~^~~~~~~~~~~~~~~ ../pair_table.cpp:174:45: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = tb->e[itable] + fraction*tb->de[itable]; ~~~~~~~~^~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_halffull_newton.cpp ../angle_table.cpp: In member function ‘virtual void LAMMPS_NS::AngleTable::read_restart(FILE*)’: ../angle_table.cpp:292:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_table.cpp:293:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_table.cpp: In member function ‘void LAMMPS_NS::AngleTable::read_table(LAMMPS_NS::AngleTable::Table*, char*, char*)’: ../angle_table.cpp:385:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ ../angle_table.cpp:387:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../angle_table.cpp:388:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../angle_table.cpp:394:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../angle_table.cpp:403:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../angle_table.cpp:405:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_pe_tally.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../delete_bonds.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../remap.cpp ../pair_eim.cpp: In member function ‘void LAMMPS_NS::PairEIM::read_file(char*)’: ../pair_eim.cpp:501:22: warning: ‘fptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (!grabsingle(fptr,i)) ~~~~~~~~~~^~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_tersoff_mod.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_fragment_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_reaxc.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_line_lj.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid_nvt_small.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_gravity_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_reaxc_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_eos_table.cpp ../pair_line_lj.cpp: In member function ‘virtual void LAMMPS_NS::PairLineLJ::compute(int, int)’: ../pair_line_lj.cpp:307:27: warning: ‘fpair’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (evflag) ev_tally(i,j,nlocal,newton_pair, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ evdwl,0.0,fpair,delx,dely,delz); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../manifold_ellipsoid.cpp ../pair_reaxc_omp.cpp: In member function ‘virtual void LAMMPS_NS::PairReaxCOMP::compute(int, int)’: ../pair_reaxc_omp.cpp:223:31: warning: ‘t_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] data->timing.nbrs = t_end - t_start; ~~~~~~^~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../ewald.cpp ../fix_eos_table.cpp: In member function ‘void LAMMPS_NS::FixEOStable::read_table(LAMMPS_NS::FixEOStable::Table*, LAMMPS_NS::FixEOStable::Table*, char*, char*)’: ../fix_eos_table.cpp:216:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ ../fix_eos_table.cpp:218:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../fix_eos_table.cpp:219:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../fix_eos_table.cpp:225:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../fix_eos_table.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../fix_eos_table.cpp:237:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_com_chunk.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_multi_body.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_temp_chunk.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_temp_uef.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_temp_asphere.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../min_linesearch.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_tersoff_mod_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_gran_hooke_history.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper_zero.cpp ../pair_gran_hooke_history.cpp: In member function ‘virtual void LAMMPS_NS::PairGranHookeHistory::read_restart(FILE*)’: ../pair_gran_hooke_history.cpp:540:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gran_hooke_history.cpp: In member function ‘virtual void LAMMPS_NS::PairGranHookeHistory::read_restart_settings(FILE*)’: ../pair_gran_hooke_history.cpp:566:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kn,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gran_hooke_history.cpp:567:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kt,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gran_hooke_history.cpp:568:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamman,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gran_hooke_history.cpp:569:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gammat,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gran_hooke_history.cpp:570:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&xmu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gran_hooke_history.cpp:571:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dampflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_cosine_shift_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_soft_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_qeq_slater.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_msd_nongauss.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../ntopo_bond_template.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_srp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_qeq_point.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lcbop.cpp ../pair_srp.cpp: In member function ‘virtual void LAMMPS_NS::PairSRP::read_restart(FILE*)’: ../pair_srp.cpp:702:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_srp.cpp:707:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_srp.cpp:708:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_srp.cpp: In member function ‘virtual void LAMMPS_NS::PairSRP::read_restart_settings(FILE*)’: ../pair_srp.cpp:736:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_srp.cpp:737:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bptype,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_srp.cpp:738:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&btype,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_srp.cpp:739:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&min,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ ../pair_srp.cpp:740:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&midpoint,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_srp.cpp:741:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&exclude,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../neb.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_gromacs.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_class2_coul_cut_omp.cpp ../pair_lcbop.cpp: In member function ‘void LAMMPS_NS::PairLCBOP::read_file(char*)’: ../pair_lcbop.cpp:988:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:994:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_1); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:995:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_2); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:996:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&gamma_1); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:997:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&A); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:998:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&B_1); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:999:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&B_2); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1000:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&alpha); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1001:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&beta_1); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1002:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&beta_2); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1003:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&d); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1004:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&C_1); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1005:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&C_4); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1006:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&C_6); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1007:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&L); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1008:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&kappa); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1009:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&R_0); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1010:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&R_1); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1011:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_0); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1012:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_1_LR); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1013:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_2_LR); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1014:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&v_1); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1015:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&v_2); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1016:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&eps_1); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1017:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&eps_2); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1018:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&lambda_1); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1019:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&lambda_2); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1020:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&eps); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1021:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&delta); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1024:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1033:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1040:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] while (1) { fgets(s,MAXLINE,fp); if (s[0] != '#') break; } ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1047:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_lcbop.cpp:1053:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_lj_gromacs.cpp: In member function ‘virtual void LAMMPS_NS::PairLJGromacs::read_restart(FILE*)’: ../pair_lj_gromacs.cpp:345:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_gromacs.cpp:349:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_gromacs.cpp:350:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_gromacs.cpp:351:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_gromacs.cpp:352:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_gromacs.cpp: In member function ‘virtual void LAMMPS_NS::PairLJGromacs::read_restart_settings(FILE*)’: ../pair_lj_gromacs.cpp:382:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_gromacs.cpp:383:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_gromacs.cpp:384:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_gromacs.cpp:385:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_eff_cut.cpp ../pair_lj_gromacs.cpp: In member function ‘virtual double LAMMPS_NS::PairLJGromacs::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_gromacs.cpp:439:65: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] phiswitch = t*t*t*(ljsw3[itype][jtype] + ljsw4[itype][jtype]*t); ~~~~~~~~~~~~~~~~~~~^~ ../pair_lj_gromacs.cpp: In member function ‘virtual void LAMMPS_NS::PairLJGromacs::compute(int, int)’: ../pair_lj_gromacs.cpp:141:71: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] eswitch = t*t*t*(ljsw3[itype][jtype] + ljsw4[itype][jtype]*t); ~~~~~~~~~~~~~~~~~~~^~ ../pair_lj_class2_coul_cut_omp.cpp: In member function ‘void LAMMPS_NS::PairLJClass2CoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_class2_coul_cut_omp.cpp:161:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_cut_omp.cpp:161:45: warning: ‘r3inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) - ../pair_lj_class2_coul_cut_omp.cpp: In member function ‘void LAMMPS_NS::PairLJClass2CoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_class2_coul_cut_omp.cpp:161:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_cut_omp.cpp:161:45: warning: ‘r3inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) - mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_reaxc.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_qeq_comb_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_charmm_coul_long_soft.cpp ../pair_eff_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairEffCut::read_restart(FILE*)’: ../pair_eff_cut.cpp:970:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_eff_cut.cpp:973:27: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_eff_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairEffCut::read_restart_settings(FILE*)’: ../pair_eff_cut.cpp:997:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_eff_cut.cpp:998:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_eff_cut.cpp:999:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::read_restart(FILE*)’: ../pair_lj_charmm_coul_long_soft.cpp:843:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:847:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:848:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:849:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:850:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:851:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::read_restart_settings(FILE*)’: ../pair_lj_charmm_coul_long_soft.cpp:886:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:887:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphalj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:888:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:890:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:891:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:892:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:893:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:894:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_property_local.cpp ../pair_lj_charmm_coul_long_soft.cpp: In member function ‘virtual double LAMMPS_NS::PairLJCharmmCoulLongSoft::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_charmm_coul_long_soft.cpp:984:31: warning: ‘denlj’ may be used uninitialized in this function [-Wmaybe-uninitialized] (1.0/(denlj*denlj) - 1.0/denlj); ~~~^~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:976:15: warning: ‘denc’ may be used uninitialized in this function [-Wmaybe-uninitialized] prefactor = force->qqrd2e * lj1[itype][jtype] * atom->q[i]*atom->q[j] / denc; ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:977:13: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*erfc; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::compute_outer(int, int)’: ../pair_lj_charmm_coul_long_soft.cpp:530:24: warning: ‘denc’ may be used uninitialized in this function [-Wmaybe-uninitialized] eprefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc; ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:531:19: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = eprefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:552:66: warning: ‘fprefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) forcecoul -= (1.0-factor_coul)*fprefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:551:58: warning: ‘expm2’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2); ^ ../pair_lj_charmm_coul_long_soft.cpp:551:53: warning: ‘grij’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2); ^ ../pair_reaxc.cpp: In member function ‘virtual void LAMMPS_NS::PairReaxC::compute(int, int)’: ../pair_reaxc.cpp:524:31: warning: ‘t_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] data->timing.nbrs = t_end - t_start; ~~~~~~^~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::compute(int, int)’: ../pair_lj_charmm_coul_long_soft.cpp:189:39: warning: ‘denlj’ may be used uninitialized in this function [-Wmaybe-uninitialized] (1.0/(denlj*denlj) - 1.0/denlj); ~~~^~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:182:23: warning: ‘denc’ may be used uninitialized in this function [-Wmaybe-uninitialized] prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc; ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long_soft.cpp:183:19: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_born_coul_dsf.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper.cpp ../pair_born_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulDSF::read_restart(FILE*)’: ../pair_born_coul_dsf.cpp:366:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_dsf.cpp:370:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_dsf.cpp:371:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_dsf.cpp:372:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_dsf.cpp:373:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_dsf.cpp:374:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_dsf.cpp:375:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulDSF::read_restart_settings(FILE*)’: ../pair_born_coul_dsf.cpp:407:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_dsf.cpp:408:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_dsf.cpp:409:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_dsf.cpp:410:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_dsf.cpp:411:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_dsf.cpp: In member function ‘virtual double LAMMPS_NS::PairBornCoulDSF::single(int, int, int, int, double, double, double, double&)’: ../pair_born_coul_dsf.cpp:489:30: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv ~~~~~~~~~~~~~~~^~~~~ ../pair_born_coul_dsf.cpp:489:53: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv ~~~~~~~~~~~~~~~^~~~~~ ../pair_born_coul_dsf.cpp:484:34: warning: ‘erfcc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift); ~~~~~~^~~~~~~~~~~ ../pair_born_coul_dsf.cpp:485:56: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_born_coul_dsf.cpp:484:37: warning: ‘r’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift); ~^~~~~~~~ ../pair_born_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulDSF::compute(int, int)’: ../pair_born_coul_dsf.cpp:168:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv + ~~~~~~~~~~~~~~~^~~~~ ../pair_born_coul_dsf.cpp:164:40: warning: ‘erfcc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift); ~~~~~~^~~~~~~~~~~ ../pair_born_coul_dsf.cpp:165:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_born_coul_dsf.cpp:169:30: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] d[itype][jtype]*r6inv*r2inv - offset[itype][jtype]; ~~~~~~~~~~~~~~~^~~~~~ ../pair_born_coul_dsf.cpp:164:43: warning: ‘r’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift); ~^~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_eam_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_size_nsq_newtoff_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_tersoff_table_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_lookup.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_thole_long.cpp ../reaxc_lookup.cpp: In function ‘void Tridiagonal_Solve(const double*, const double*, double*, double*, double*, unsigned int)’: ../reaxc_lookup.cpp:41:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i = 1; i < n; i++){ ~~^~~ ../reaxc_lookup.cpp: In function ‘void Natural_Cubic_Spline(const double*, const double*, cubic_spline_coef*, unsigned int, MPI_Comm)’: ../reaxc_lookup.cpp:69:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 2; i < n-1; ++i ) ~~^~~~~ ../reaxc_lookup.cpp:73:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 1; i < n-1; ++i ) ~~^~~~~ ../reaxc_lookup.cpp:77:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 1; i < n-2; ++i ) ~~^~~~~ ../reaxc_lookup.cpp:81:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 1; i < n-1; ++i ) ~~^~~~~ ../reaxc_lookup.cpp:88:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 1; i < n; ++i ){ ~~^~~ ../reaxc_lookup.cpp: In function ‘void Complete_Cubic_Spline(const double*, const double*, double, double, cubic_spline_coef*, unsigned int, MPI_Comm)’: ../reaxc_lookup.cpp:120:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 1; i < n; ++i ) ~~^~~ ../reaxc_lookup.cpp:124:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 1; i < n; ++i ) ~~^~~ ../reaxc_lookup.cpp:128:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 0; i < n-1; ++i ) ~~^~~~~ ../reaxc_lookup.cpp:133:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 1; i < n-1; ++i ) ~~^~~~~ ../reaxc_lookup.cpp:138:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( i = 1; i < n; ++i ){ ~~^~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_full_multi_3d.cpp ../pair_lj_cut_thole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTholeLong::init_style()’: ../pair_lj_cut_thole_long.cpp:364:7: warning: unused variable ‘irequest’ [-Wunused-variable] int irequest = neighbor->request(this,instance_me); ^~~~~~~~ ../pair_lj_cut_thole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTholeLong::read_restart(FILE*)’: ../pair_lj_cut_thole_long.cpp:495:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:499:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:500:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:501:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&polar[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:502:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&thole[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:504:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTholeLong::read_restart_settings(FILE*)’: ../pair_lj_cut_thole_long.cpp:540:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:541:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:542:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&thole_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:543:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:544:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:545:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:546:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:547:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:548:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_size_bin_newton_omp.cpp ../pair_lj_cut_thole_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTholeLong::compute(int, int)’: ../pair_lj_cut_thole_long.cpp:230:50: warning: ‘di_closest’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (drudetype[type[i]] != NOPOL_TYPE && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ drudetype[type[j]] != NOPOL_TYPE && j != di_closest){ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:231:33: warning: ‘dcoul’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += factor_e * dcoul; ~~~~~~~~~^~~~~~~ ../pair_lj_cut_thole_long.cpp:194:30: warning: ‘dqi’ may be used uninitialized in this function [-Wmaybe-uninitialized] dcoul = qqrd2e * dqi * dqj / r; ~~~~~~~^~~~~ ../pair_lj_cut_thole_long.cpp:231:33: warning: ‘factor_e’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul += factor_e * dcoul; ~~~~~~~~~^~~~~~~ ../pair_lj_cut_thole_long.cpp:223:21: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:228:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:225:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:236:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_cut_thole_long.cpp:226:25: warning: ‘qj’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = qi*qj * table; ~~^~~ ../pair_lj_cut_thole_long.cpp:225:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_dpd_tstat.cpp ../pair_lj_cut_thole_long.cpp: In member function ‘virtual double LAMMPS_NS::PairLJCutTholeLong::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_cut_thole_long.cpp:672:37: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_cut_thole_long.cpp:665:78: warning: ‘di_closest’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (drudetype[type[i]] != NOPOL_TYPE && drudetype[type[j]] != NOPOL_TYPE && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ di_closest != j) ~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:667:27: warning: ‘dcoul’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul += factor_e * dcoul; ~~~~~~~~~^~~~~~~ ../pair_lj_cut_thole_long.cpp:667:27: warning: ‘factor_e’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_cut_thole_long.cpp:661:28: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ ../pair_lj_cut_thole_long.cpp:661:40: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:664:56: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_thole_long.cpp:659:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*erfc; ~~~~~~~~^~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_fourier_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_fene_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_quartic_omp.cpp ../pair_dpd_tstat.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDTstat::read_restart(FILE*)’: ../pair_dpd_tstat.cpp:234:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_tstat.cpp:238:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_tstat.cpp:239:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_tstat.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDTstat::read_restart_settings(FILE*)’: ../pair_dpd_tstat.cpp:267:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&t_start,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_tstat.cpp:268:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&t_stop,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_tstat.cpp:269:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_tstat.cpp:270:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_tstat.cpp:271:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_temp_body.cpp ../bond_fene_omp.cpp: In member function ‘void LAMMPS_NS::BondFENEOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 1]’: ../bond_fene_omp.cpp:143:35: warning: ‘sr6’ may be used uninitialized in this function [-Wmaybe-uninitialized] ebond += 4.0*epsilon[type]*sr6*(sr6-1.0) + epsilon[type]; ~~~~~~~~~~~~~~~~~^~~~ ../bond_fene_omp.cpp: In member function ‘void LAMMPS_NS::BondFENEOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 0]’: ../bond_fene_omp.cpp:143:35: warning: ‘sr6’ may be used uninitialized in this function [-Wmaybe-uninitialized] ebond += 4.0*epsilon[type]*sr6*(sr6-1.0) + epsilon[type]; ~~~~~~~~~~~~~~~~~^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_long_coul_long_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_multi_newtoff_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_edpd_temp_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_angle.cpp ../npair_half_multi_newtoff_omp.cpp: In function ‘_ZN9LAMMPS_NS24NPairHalfMultiNewtoffOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_half_multi_newtoff_omp.cpp:124:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_multi_newtoff_omp.cpp:51:46: note: ‘iatom’ was declared here int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom; ^~~~~ ../npair_half_multi_newtoff_omp.cpp:123:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_multi_newtoff_omp.cpp:52:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_half_multi_newtoff_omp.cpp:124:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_multi_newtoff_omp.cpp:51:41: note: ‘imol’ was declared here int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom; ^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_planeforce.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_coul_cut_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../meam_funcs.cpp ../pair_lj_cut_coul_cut_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_cut_coul_cut_omp.cpp:159:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ../pair_lj_cut_coul_cut_omp.cpp:156:13: warning: ‘rinv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = factor_coul * qqrd2e * qtmp*q[j]*rinv; ^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_pe_atom.cpp ../pair_lj_cut_coul_cut_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_cut_coul_cut_omp.cpp:159:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut_omp.cpp:156:13: warning: ‘rinv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = factor_coul * qqrd2e * qtmp*q[j]*rinv; ^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_zbl.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_skip_size_off2on.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../min_hftn.cpp ../pair_zbl.cpp: In member function ‘virtual void LAMMPS_NS::PairZBL::compute(int, int)’: ../pair_zbl.cpp:142:53: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] (sw3[itype][jtype] + sw4[itype][jtype]*t); ~~~~~~~~~~~~~~~~~^~ ../pair_zbl.cpp: In member function ‘virtual double LAMMPS_NS::PairZBL::single(int, int, int, int, double, double, double, double&)’: ../pair_zbl.cpp:289:16: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] eswitch = t*t*t * ~^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nvt_asphere_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_temp_region.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_qeq_comb.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_cosine_shift_exp_omp.cpp ../fix_qeq_comb.cpp: In member function ‘virtual void LAMMPS_NS::FixQEQComb::post_force(int)’: ../fix_qeq_comb.cpp:164:32: warning: ‘ilist’ may be used uninitialized in this function [-Wmaybe-uninitialized] int i,ii,iloop,loopmax,inum,*ilist; ^~~~~ ../fix_qeq_comb.cpp:164:26: warning: ‘inum’ may be used uninitialized in this function [-Wmaybe-uninitialized] int i,ii,iloop,loopmax,inum,*ilist; ^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_edpd.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../thermo.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_buck6d_coul_gauss_long.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_oxdna_excv.cpp ../pair_buck6d_coul_gauss_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::compute(int, int)’: ../pair_buck6d_coul_gauss_long.cpp:88:30: warning: unused variable ‘t’ [-Wunused-variable] double prefactor,erfa,expa,t,arg,falpha; ^ ../pair_buck6d_coul_gauss_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::read_restart(FILE*)’: ../pair_buck6d_coul_gauss_long.cpp:453:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp:457:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp:458:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp:459:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp:460:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp:461:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha_ij[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp:462:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::read_restart_settings(FILE*)’: ../pair_buck6d_coul_gauss_long.cpp:496:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&vdwl_smooth,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp:497:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&coul_smooth,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp:498:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp:499:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp:500:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp:501:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp:502:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::compute(int, int)’: ../pair_buck6d_coul_gauss_long.cpp:214:72: warning: ‘erfa’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor*erfa; ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ../pair_buck6d_coul_gauss_long.cpp:214:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor*erfa; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp:214:42: warning: ‘ealpha’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor*erfa; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp:208:19: warning: ‘ebuck6d’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = ebuck6d - offset[itype][jtype]; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp: In member function ‘virtual double LAMMPS_NS::PairBuck6dCoulGaussLong::single(int, int, int, int, double, double, double, double&)’: ../pair_buck6d_coul_gauss_long.cpp:615:36: warning: ‘ealpha’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor*erfa; ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp:615:56: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor*erfa; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_buck6d_coul_gauss_long.cpp:615:66: warning: ‘erfa’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor*erfa; ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ../pair_buck6d_coul_gauss_long.cpp:609:15: warning: ‘ebuck6d’ may be used uninitialized in this function [-Wmaybe-uninitialized] phibuck6d = ebuck6d - offset[itype][jtype]; ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaExcv::init_style()’: ../pair_oxdna_excv.cpp:576:7: warning: variable ‘irequest’ set but not used [-Wunused-but-set-variable] int irequest; ^~~~~~~~ ../pair_oxdna_excv.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaExcv::read_restart(FILE*)’: ../pair_oxdna_excv.cpp:718:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp:723:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_ss[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp:724:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_ss[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp:725:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_ss_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp:726:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_ss[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp:727:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_ss_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp:728:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_sb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp:729:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_sb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp:730:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_sb_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp:731:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_sb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp:732:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_sb_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp:733:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_bb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp:734:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_bb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp:735:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_bb_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp:736:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_bb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp:737:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_bb_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaExcv::read_restart_settings(FILE*)’: ../pair_oxdna_excv.cpp:780:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp:781:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_excv.cpp:782:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_stress_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_tri_lj.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_respa.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_cosine_delta_omp.cpp ../pair_tri_lj.cpp: In member function ‘virtual void LAMMPS_NS::PairTriLJ::compute(int, int)’: ../pair_tri_lj.cpp:381:27: warning: ‘fpair’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (evflag) ev_tally(i,j,nlocal,newton_pair, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ evdwl,0.0,fpair,delx,dely,delz); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_tersoff_table.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_cmap.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_msm_omp.cpp ../pair_coul_msm_omp.cpp: In member function ‘void LAMMPS_NS::PairCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_coul_msm_omp.cpp:171:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*egamma; ^~~~~ ../pair_coul_msm_omp.cpp:171:13: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_coul_msm_omp.cpp:173:46: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_coul_msm_omp.cpp:173:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_long_tip4p_long_omp.cpp ../pair_coul_msm_omp.cpp: In member function ‘void LAMMPS_NS::PairCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_coul_msm_omp.cpp:171:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*egamma; ^~~~~ ../pair_coul_msm_omp.cpp:171:13: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_coul_msm_omp.cpp:173:46: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_coul_msm_omp.cpp:173:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../fix_cmap.cpp: In member function ‘double LAMMPS_NS::FixCMAP::dihedral_angle_atan2(double, double, double, double, double, double, double, double, double, double)’: ../fix_cmap.cpp:958:10: warning: ‘angle’ may be used uninitialized in this function [-Wmaybe-uninitialized] return angle; ^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_pressure_grem.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dump_image.cpp ../compute_pressure_grem.cpp: In member function ‘virtual double LAMMPS_NS::ComputePressureGrem::compute_scalar()’: ../compute_pressure_grem.cpp:89:42: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] scalar = (temperature->dof * boltz * t + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_size_bin_newton.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_born_coul_wolf_cs.cpp ../dump_image.cpp: In member function ‘void LAMMPS_NS::DumpImage::create_image()’: ../dump_image.cpp:1033:33: warning: ‘color2’ may be used uninitialized in this function [-Wmaybe-uninitialized] image->draw_cylinder(xmid,x[atom2],color2,diameter,3); ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dump_image.cpp:1027:33: warning: ‘color1’ may be used uninitialized in this function [-Wmaybe-uninitialized] image->draw_cylinder(x[atom1],xmid,color1,diameter,3); ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dump_image.cpp:968:59: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] btype = atom->map(onemols[imol]->bond_type[iatom][m]); ^ ../dump_image.cpp:968:41: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] btype = atom->map(onemols[imol]->bond_type[iatom][m]); ^ ../dump_image.cpp:893:29: warning: ‘color’ may be used uninitialized in this function [-Wmaybe-uninitialized] image->draw_sphere(bodyarray[k],color,bodyarray[k][3]); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dump_image.cpp:1033:33: warning: ‘diameter’ may be used uninitialized in this function [-Wmaybe-uninitialized] image->draw_cylinder(xmid,x[atom2],color2,diameter,3); ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dump_image.cpp: In member function ‘virtual int LAMMPS_NS::DumpImage::modify_param(int, char**)’: ../dump_image.cpp:1300:23: warning: ‘factor’ may be used uninitialized in this function [-Wmaybe-uninitialized] int n = 6 + factor*nentry; ~~~~~~^~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_fep.cpp ../pair_born_coul_wolf_cs.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulWolfCS::compute(int, int)’: ../pair_born_coul_wolf_cs.cpp:150:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv + ~~~~~~~~~~~~~~~^~~~~ ../pair_born_coul_wolf_cs.cpp:147:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_born_coul_wolf_cs.cpp:151:30: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] d[itype][jtype]*r6inv*r2inv - offset[itype][jtype]; ~~~~~~~~~~~~~~~^~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_ttm_mod.cpp ../fix_ttm_mod.cpp: In constructor ‘LAMMPS_NS::FixTTMMod::FixTTMMod(LAMMPS_NS::LAMMPS*, int, char**)’: ../fix_ttm_mod.cpp:123:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:124:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:128:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:129:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:133:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:134:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:138:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:139:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:143:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:144:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:148:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:149:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:153:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:154:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:158:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:159:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:163:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:164:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:168:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:169:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:173:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:174:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:178:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:179:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:183:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:184:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:188:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:189:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:193:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:194:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:198:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:199:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:203:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:204:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:208:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:209:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:213:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:214:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:218:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:219:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:224:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:228:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../fix_ttm_mod.cpp:229:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_bin_newton_tri_omp.cpp ../npair_half_bin_newton_tri_omp.cpp: In function ‘_ZN9LAMMPS_NS24NPairHalfBinNewtonTriOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_half_bin_newton_tri_omp.cpp:123:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_bin_newton_tri_omp.cpp:49:43: note: ‘iatom’ was declared here int i,j,k,n,itype,jtype,ibin,which,imol,iatom; ^~~~~ ../npair_half_bin_newton_tri_omp.cpp:122:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_bin_newton_tri_omp.cpp:50:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_half_bin_newton_tri_omp.cpp:123:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_bin_newton_tri_omp.cpp:49:38: note: ‘imol’ was declared here int i,j,k,n,itype,jtype,ibin,which,imol,iatom; ^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_temp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_tdpd.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_pressure.cpp ../pair_tdpd.cpp: In member function ‘virtual void LAMMPS_NS::PairTDPD::read_restart(FILE*)’: ../pair_tdpd.cpp:401:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tdpd.cpp:405:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tdpd.cpp:406:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tdpd.cpp:407:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&power[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tdpd.cpp:408:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tdpd.cpp:409:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cutcc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tdpd.cpp:411:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tdpd.cpp:412:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tdpd.cpp:413:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&powercc[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tdpd.cpp: In member function ‘virtual void LAMMPS_NS::PairTDPD::read_restart_settings(FILE*)’: ../pair_tdpd.cpp:449:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&temperature,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tdpd.cpp:450:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tdpd.cpp:451:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tdpd.cpp:452:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../compute_pressure.cpp: In member function ‘virtual double LAMMPS_NS::ComputePressure::compute_scalar()’: ../compute_pressure.cpp:197:42: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] scalar = (temperature->dof * boltz * t + ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ ../compute_pressure.cpp: In member function ‘virtual void LAMMPS_NS::ComputePressure::compute_vector()’: ../compute_pressure.cpp:252:31: warning: ‘ke_tensor’ may be used uninitialized in this function [-Wmaybe-uninitialized] vector[1] = (ke_tensor[1] + virial[1]) * inv_volume * nktv2p; ~~~~~~~~~~~^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_coul_long_cs.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_multi_newtoff.cpp ../npair_half_multi_newtoff.cpp: In member function ‘virtual void LAMMPS_NS::NPairHalfMultiNewtoff::build(LAMMPS_NS::NeighList*)’: ../npair_half_multi_newtoff.cpp:113:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_multi_newtoff.cpp:114:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_multi_newtoff.cpp:114:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../pair_lj_cut_coul_long_cs.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulLongCS::compute_outer(int, int)’: ../pair_lj_cut_coul_long_cs.cpp:542:45: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcecoul = prefactor * (erfc + EWALD_F*grij*expm2); ~~~~~~^~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_cs.cpp:519:64: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_coul_long_cs.cpp:542:59: warning: ‘expm2’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcecoul = prefactor * (erfc + EWALD_F*grij*expm2); ^ ../pair_lj_cut_coul_long_cs.cpp:542:54: warning: ‘grij’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcecoul = prefactor * (erfc + EWALD_F*grij*expm2); ^ ../pair_lj_cut_coul_long_cs.cpp:548:50: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = ptable[itable] + fraction*dptable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_cs.cpp:545:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = vtable[itable] + fraction*dvtable[itable]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_kolmogorov_crespi_z.cpp ../pair_lj_cut_coul_long_cs.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulLongCS::compute(int, int)’: ../pair_lj_cut_coul_long_cs.cpp:184:21: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_cs.cpp:189:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_coul_long_cs.cpp:193:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_cut_coul_long_cs.cpp:186:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_cs.cpp:186:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_table_omp.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_inner(int, int, LAMMPS_NS::ThrData*)’: ../pair_lj_long_tip4p_long_omp.cpp:1337:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ~~~~~~~~~^~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1333:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ~~~~~~~~~^~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1306:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ~~~~~~~~~^~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1302:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ~~~~~~~~~^~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_ttm.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_middle(int, int, LAMMPS_NS::ThrData*)’: ../pair_lj_long_tip4p_long_omp.cpp:1599:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ~~~~~~~~~^~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1595:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ~~~~~~~~~^~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1568:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ~~~~~~~~~^~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1564:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ~~~~~~~~~^~~~~~ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper_umbrella_omp.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1054:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1050:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1054:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1050:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_class2_coul_long_omp.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_long_tip4p_long_omp.cpp:1077:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1077:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_long_tip4p_long_omp.cpp:1077:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1077:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_class2_coul_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJClass2CoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_class2_coul_long_omp.cpp:172:13: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_class2_coul_long_omp.cpp:173:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_class2_coul_long_omp.cpp:177:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_long_omp.cpp:177:45: warning: ‘r3inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) - ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_class2_coul_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJClass2CoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_class2_coul_long_omp.cpp:172:13: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_class2_coul_long_omp.cpp:172:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_class2_coul_long_omp.cpp:177:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_long_omp.cpp:177:45: warning: ‘r3inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) - mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../ntopo_dihedral_partial.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_event_prd.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1054:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1050:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj96_cut_omp.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1054:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1050:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_pe_mol_tally.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_meam_sw_spline.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nvt_asphere.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1054:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1050:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_meam_sw_spline.cpp: In member function ‘void LAMMPS_NS::PairMEAMSWSpline::read_file(const char*)’: ../pair_meam_sw_spline.cpp:475:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_meam_sw_spline.cpp: In member function ‘void LAMMPS_NS::PairMEAMSWSpline::SplineFunction::parse(FILE*, LAMMPS_NS::Error*)’: ../pair_meam_sw_spline.cpp:607:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_meam_sw_spline.cpp:613:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_meam_sw_spline.cpp:619:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_meam_sw_spline.cpp:623:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1054:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1050:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_long_tip4p_long_omp.cpp:1077:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1077:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_body_local.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_long_tip4p_long_omp.cpp:1077:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1077:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../meam_dens_final.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_cosine_shift_exp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../prd.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_coul_wolf.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1054:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1050:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1054:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1050:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../dihedral_cosine_shift_exp.cpp: In member function ‘virtual void LAMMPS_NS::DihedralCosineShiftExp::read_restart(FILE*)’: ../dihedral_cosine_shift_exp.cpp:324:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&umin[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_cosine_shift_exp.cpp:325:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_cosine_shift_exp.cpp:326:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cost[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_cosine_shift_exp.cpp:327:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sint[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_cosine_shift_exp.cpp:328:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart(FILE*)’: ../pair_lj_cut_coul_wolf.cpp:375:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_wolf.cpp:379:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_wolf.cpp:380:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_wolf.cpp:381:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart_settings(FILE*)’: ../pair_lj_cut_coul_wolf.cpp:412:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alf,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_wolf.cpp:413:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_wolf.cpp:414:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_wolf.cpp:415:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_wolf.cpp:416:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_wolf.cpp:417:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_adapt_fep.cpp ../pair_lj_cut_coul_wolf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulWolf::compute(int, int)’: ../pair_lj_cut_coul_wolf.cpp:172:60: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_coul_wolf.cpp:165:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_cosine_delta.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_dt_reset.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_bin_newtoff_ghost.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_airebo.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_snap.cpp ../npair_half_bin_newtoff_ghost.cpp: In member function ‘virtual void LAMMPS_NS::NPairHalfBinNewtoffGhost::build(LAMMPS_NS::NeighList*)’: ../npair_half_bin_newtoff_ghost.cpp:114:37: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_bin_newtoff_ghost.cpp:115:67: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_bin_newtoff_ghost.cpp:115:50: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../meam_setup_done.cpp ../pair_airebo.cpp: In member function ‘void LAMMPS_NS::PairAIREBO::read_file(char*)’: ../pair_airebo.cpp:3385:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3391:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3393:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3397:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3399:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3401:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3403:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3405:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3407:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3409:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3411:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3413:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3415:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3417:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3419:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3421:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3423:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3425:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3429:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3431:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3433:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3435:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3437:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3439:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3441:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3443:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3445:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3447:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3449:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3451:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3453:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3455:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3457:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3459:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3461:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3463:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3465:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3467:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3469:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3471:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3473:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3475:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3477:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3482:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3484:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3486:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3488:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3490:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3492:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3494:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3496:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3498:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3500:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3502:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3504:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3506:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3508:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3510:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3512:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3514:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3516:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3518:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3520:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3522:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3527:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3529:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3531:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3533:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3535:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3537:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3539:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3541:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3543:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3550:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3551:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3552:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3556:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3560:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3563:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3566:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3570:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3573:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3580:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3581:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3582:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3584:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3588:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3592:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3596:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3603:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3604:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3605:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3607:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3612:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3616:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3621:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3629:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3630:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3631:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3632:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3637:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3641:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3646:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3654:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3655:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3656:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3658:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3663:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3667:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3673:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3682:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3683:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3684:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3686:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3691:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3695:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3701:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3710:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3711:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3712:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3714:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3719:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3723:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3729:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3738:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3739:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3740:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3742:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3747:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3751:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../pair_airebo.cpp:3757:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ ../meam_setup_done.cpp: In member function ‘double LAMMPS_NS::MEAM::phi_meam(double, int, int)’: ../meam_setup_done.cpp:447:21: warning: ‘rho0_2’ may be used uninitialized in this function [-Wmaybe-uninitialized] rhobar2 = rho02 / rho_bkgd2 * G2; ~~~~~~^~~~~~~~~~~ ../meam_setup_done.cpp:446:21: warning: ‘rho0_1’ may be used uninitialized in this function [-Wmaybe-uninitialized] rhobar1 = rho01 / rho_bkgd1 * G1; ~~~~~~^~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_vacf.cpp ../pair_airebo.cpp: In member function ‘void LAMMPS_NS::PairAIREBO::TORSION(int, int)’: ../pair_airebo.cpp:1244:22: warning: ‘evdwl’ may be used uninitialized in this function [-Wmaybe-uninitialized] ev_tally4(i,j,k,l,evdwl,fi,fj,fk,delil,del34,delkl); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_snap.cpp: In function ‘_ZN9LAMMPS_NS8PairSNAP17compute_optimizedEii._omp_fn.0’: ../pair_snap.cpp:478:9: warning: ‘ielem’ may be used uninitialized in this function [-Wmaybe-uninitialized] int ielem; ^~~~~ ../pair_snap.cpp:523:12: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized] double starttime, endtime; ^~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../citeme.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_airebo.cpp: In member function ‘double LAMMPS_NS::PairAIREBO::piRCSpline(double, double, double, int, int, double*)’: ../pair_airebo.cpp:3286:10: warning: ‘piRC’ may be used uninitialized in this function [-Wmaybe-uninitialized] return piRC; ^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../meam_setup_param.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_nsq_newtoff_ghost.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1054:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1050:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_born_omp.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1054:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1050:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../npair_half_nsq_newtoff_ghost.cpp: In member function ‘virtual void LAMMPS_NS::NPairHalfNsqNewtoffGhost::build(LAMMPS_NS::NeighList*)’: ../npair_half_nsq_newtoff_ghost.cpp:113:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_nsq_newtoff_ghost.cpp:114:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_nsq_newtoff_ghost.cpp:114:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_nsq_newtoff_ghost.cpp:99:39: warning: ‘bitmask’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (includegroup && !(mask[j] & bitmask)) continue; ~~~~~~~~~^~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_long_tip4p_long_omp.cpp:1077:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1077:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_indent.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_long_tip4p_long_omp.cpp:1077:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1077:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_gauss_omp.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1054:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1050:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_morse_omp.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1054:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1050:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_airebo.cpp: In member function ‘void LAMMPS_NS::PairAIREBO::FLJ(int, int)’: ../pair_airebo.cpp:814:21: warning: ‘dwij’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair = dC*dwij / rij; ~~^~~~~ ../pair_airebo.cpp:858:32: warning: ‘dwmjS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair3 = dC*wikS*wkmS*dwmjS / rmjS; ~~~~~~~~~~~~^~~~~~ ../pair_airebo.cpp:853:33: warning: ‘wmjS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair2 = dC*wikS*dwkmS*wmjS / rkmS; ~~~~~~~~~~~~~^~~~~ ../pair_airebo.cpp:853:27: warning: ‘dwkmS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair2 = dC*wikS*dwkmS*wmjS / rkmS; ~~~~~~~^~~~~~ ../pair_airebo.cpp:858:27: warning: ‘wkmS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair3 = dC*wikS*wkmS*dwmjS / rmjS; ~~~~~~~^~~~~ ../pair_airebo.cpp:829:27: warning: ‘dwkjS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair2 = dC*wikS*dwkjS / rkjS; ~~~~~~~^~~~~~ ../pair_airebo.cpp:825:28: warning: ‘wkjS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair1 = dC*dwikS*wkjS / rikS; ~~~~~~~~^~~~~ ../pair_airebo.cpp:825:22: warning: ‘dwikS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair1 = dC*dwikS*wkjS / rikS; ~~^~~~~~ ../pair_airebo.cpp:829:22: warning: ‘wikS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair2 = dC*wikS*dwkjS / rkjS; ~~^~~~~ ../pair_airebo.cpp:858:18: warning: ‘rmjS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair3 = dC*wikS*wkmS*dwmjS / rmjS; ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_airebo.cpp:853:18: warning: ‘rkmS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair2 = dC*wikS*dwkmS*wmjS / rkmS; ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_airebo.cpp:829:18: warning: ‘rkjS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair2 = dC*wikS*dwkjS / rkjS; ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../pair_airebo.cpp:825:18: warning: ‘rikS’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair1 = dC*dwikS*wkjS / rikS; ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../pair_airebo.cpp:884:21: warning: ‘atomm’ may be used uninitialized in this function [-Wmaybe-uninitialized] v_tally4(atomi,atomj,atomk,atomm,fi,fj,fk,delimS,deljmS,delkmS); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_airebo.cpp:884:21: warning: ‘atomk’ may be used uninitialized in this function [-Wmaybe-uninitialized] mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../write_data.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../body.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_class2_coul_long.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1054:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1050:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1054:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1050:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../update.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_long_tip4p_long_omp.cpp:1077:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1077:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_class2_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2CoulLong::read_restart(FILE*)’: ../pair_lj_class2_coul_long.cpp:406:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_long.cpp:410:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_long.cpp:411:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_long.cpp:412:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2CoulLong::read_restart_settings(FILE*)’: ../pair_lj_class2_coul_long.cpp:443:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_long.cpp:444:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_long.cpp:445:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_long.cpp:446:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_long.cpp:447:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_long.cpp:448:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_long.cpp:449:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_long.cpp: In member function ‘virtual double LAMMPS_NS::PairLJClass2CoulLong::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_class2_coul_long.cpp:538:18: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] philj = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_long.cpp:538:37: warning: ‘r3inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] philj = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) - ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_class2_coul_long.cpp:531:28: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ ../pair_lj_class2_coul_long.cpp:531:40: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_long.cpp:534:56: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_class2_coul_long.cpp:529:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*erfc; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nvt_sphere_omp.cpp ../pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_long_tip4p_long_omp.cpp:1077:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1077:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_class2_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2CoulLong::compute(int, int)’: ../pair_lj_class2_coul_long.cpp:177:21: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_long.cpp:182:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_class2_coul_long.cpp:185:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_long.cpp:185:45: warning: ‘r3inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) - ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_class2_coul_long.cpp:179:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_long.cpp:179:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_coul_long_soft_omp.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1083:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1012:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1069:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1068:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../universe.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1054:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1050:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:993:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1054:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1050:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:997:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../universe.cpp: In member function ‘void LAMMPS_NS::Universe::add_world(char*)’: ../universe.cpp:190:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] } else if (strlen(str) == len-1) { ~~~~~~~~~~~~^~~~~~~~ ../pair_lj_cut_coul_long_soft_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_cut_coul_long_soft_omp.cpp:182:39: warning: ‘denlj’ may be used uninitialized in this function [-Wmaybe-uninitialized] (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype]; ~~~^~~~~~ ../pair_lj_cut_coul_long_soft_omp.cpp:175:13: warning: ‘denc’ may be used uninitialized in this function [-Wmaybe-uninitialized] prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc; ^~~~~~~~~ ../pair_lj_cut_coul_long_soft_omp.cpp:176:13: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../universe.cpp: In constructor ‘LAMMPS_NS::Universe::Universe(LAMMPS_NS::LAMMPS*, MPI_Comm)’: ../universe.cpp:35:1: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] Universe::Universe(LAMMPS *lmp, MPI_Comm communicator) : Pointers(lmp) ^~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from ../universe.cpp:18: /usr/include/x86_64-linux-gnu/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 9 and 11 bytes into a destination of size 10 __bos (__s), __fmt, __va_arg_pack ()); ^ ../pair_lj_cut_coul_long_soft_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_cut_coul_long_soft_omp.cpp:182:26: warning: ‘denlj’ may be used uninitialized in this function [-Wmaybe-uninitialized] (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype]; ~~~~~~^~~~~~~ ../pair_lj_cut_coul_long_soft_omp.cpp:175:13: warning: ‘denc’ may be used uninitialized in this function [-Wmaybe-uninitialized] prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc; ^~~~~~~~~ ../pair_lj_cut_coul_long_soft_omp.cpp:176:13: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../universe.cpp: In member function ‘void LAMMPS_NS::Universe::reorder(char*, char*)’: ../universe.cpp:149:17: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] MPI_Comm_split(uorig,0,key,&uworld); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rx.cpp ../fix_rx.cpp:761:3: warning: multi-line comment [-Wcomment] //#pragma omp parallel \ ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_bond.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_property_chunk.cpp In file included from ../fix.h:17:0, from ../fix_rx.h:23, from ../fix_rx.cpp:19: ../fix_rx.cpp: In member function ‘virtual void LAMMPS_NS::FixRX::post_constructor()’: ../pointers.h:35:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define MAX(A,B) ((A) > (B) ? (A) : (B)) ~~~~^~~~~ ../fix_rx.cpp:324:24: note: in expansion of macro ‘MAX’ tmpmaxstrlen = MAX(tmpmaxstrlen,strlen(word)); ^~~ ../fix_rx.cpp: In member function ‘void LAMMPS_NS::FixRX::initSparse()’: ../fix_rx.cpp:549:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (sparseKinetics_inu[i][idx] >= nu_bin.size()) ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../fix_rx.cpp:567:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (sparseKinetics_inu[i][idx] >= nu_bin.size()) ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../fix_rx.cpp:583:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 1; i < nu_bin.size(); ++i) ~~^~~~~~~~~~~~~~~ ../fix_rx.cpp: In member function ‘virtual void LAMMPS_NS::FixRX::pre_force(int)’: ../fix_rx.cpp:732:13: warning: unused variable ‘timer_start’ [-Wunused-variable] TimerType timer_start = getTimeStamp(); ^~~~~~~~~~~ ../fix_rx.cpp:811:13: warning: unused variable ‘timer_stop’ [-Wunused-variable] TimerType timer_stop = getTimeStamp(); ^~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_atom_swap.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_nm_cut.cpp ../pair_nm_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCut::read_restart(FILE*)’: ../pair_nm_cut.cpp:329:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut.cpp:333:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&e0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut.cpp:334:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut.cpp:335:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nn[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut.cpp:336:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut.cpp:337:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairNMCut::read_restart_settings(FILE*)’: ../pair_nm_cut.cpp:367:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut.cpp:368:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut.cpp:369:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_nm_cut.cpp:370:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../special.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_dpd_fdt_energy.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_sph_taitwater.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_dpd_fdt_energy.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDfdtEnergy::init_style()’: ../pair_dpd_fdt_energy.cpp:409:7: warning: unused variable ‘irequest’ [-Wunused-variable] int irequest = neighbor->request(this,instance_me); ^~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_dpd_fdt_energy.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDfdtEnergy::read_restart(FILE*)’: ../pair_dpd_fdt_energy.cpp:478:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_fdt_energy.cpp:482:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_fdt_energy.cpp:483:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_fdt_energy.cpp:484:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_fdt_energy.cpp:485:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_fdt_energy.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDfdtEnergy::read_restart_settings(FILE*)’: ../pair_dpd_fdt_energy.cpp:514:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_fdt_energy.cpp:515:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_fdt_energy.cpp:516:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_dpd_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_copy.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_read_restart.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2003:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1999:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_harmonic_shift_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nvt_omp.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2003:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1999:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nvt_body.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_minimize.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../ntopo_improper_all.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_peri_eps.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_quartic.cpp ../pair_peri_eps.cpp: In member function ‘virtual void LAMMPS_NS::PairPeriEPS::read_restart(FILE*)’: ../pair_peri_eps.cpp:570:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_eps.cpp:574:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bulkmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_eps.cpp:575:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shearmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_eps.cpp:576:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&s00[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_eps.cpp:577:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_eps.cpp:578:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_eps.cpp:579:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&m_yieldstress[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_gauss.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../angle_quartic.cpp: In member function ‘virtual void LAMMPS_NS::AngleQuartic::read_restart(FILE*)’: ../angle_quartic.cpp:236:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_quartic.cpp:237:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_quartic.cpp:238:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_quartic.cpp:239:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2003:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1999:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_gauss.cpp: In member function ‘virtual void LAMMPS_NS::PairGauss::read_restart(FILE*)’: ../pair_gauss.cpp:285:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gauss.cpp:289:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gauss.cpp:290:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gauss.cpp:291:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gauss.cpp: In member function ‘virtual void LAMMPS_NS::PairGauss::read_restart_settings(FILE*)’: ../pair_gauss.cpp:318:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gauss.cpp:319:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gauss.cpp:320:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_coul_cut_soft_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_morse.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2003:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1999:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_oneway.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_morse.cpp: In member function ‘virtual void LAMMPS_NS::PairMorse::read_restart(FILE*)’: ../pair_morse.cpp:269:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_morse.cpp:273:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_morse.cpp:274:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_morse.cpp:275:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_morse.cpp:276:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_morse.cpp: In member function ‘virtual void LAMMPS_NS::PairMorse::read_restart_settings(FILE*)’: ../pair_morse.cpp:304:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_morse.cpp:305:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_morse.cpp:306:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut_soft_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulCutSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_cut_coul_cut_soft_omp.cpp:160:39: warning: ‘denlj’ may be used uninitialized in this function [-Wmaybe-uninitialized] (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype]; ~~~^~~~~~ ../pair_lj_cut_coul_cut_soft_omp.cpp:156:13: warning: ‘denc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = factor_coul * qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc; ^~~~~ ../pair_lj_cut_coul_cut_soft_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulCutSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_cut_coul_cut_soft_omp.cpp:160:26: warning: ‘denlj’ may be used uninitialized in this function [-Wmaybe-uninitialized] (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype]; ~~~~~~^~~~~~~ ../pair_lj_cut_coul_cut_soft_omp.cpp:156:13: warning: ‘denc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = factor_coul * qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../change_box.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_half_bin_3d_newton_ssa.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_ke_rigid.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../region_prism.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_tip4p_long_omp.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2003:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1999:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_spring_chunk.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2003:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1999:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../region_prism.cpp: In member function ‘void LAMMPS_NS::RegPrism::find_nearest(double*, double&, double&, double&)’: ../region_prism.cpp:412:6: warning: ‘*((void*)& nearest +16)’ may be used uninitialized in this function [-Wmaybe-uninitialized] zp = nearest[2]; ~~~^~~~~~~~~~~~ ../region_prism.cpp:410:6: warning: ‘nearest’ may be used uninitialized in this function [-Wmaybe-uninitialized] xp = nearest[0]; ~~~^~~~~~~~~~~~ ../region_prism.cpp:411:6: warning: ‘*((void*)& nearest +8)’ may be used uninitialized in this function [-Wmaybe-uninitialized] yp = nearest[1]; ~~~^~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_coul_long_soft.cpp ../pair_lj_cut_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 1; int = 1; int = 1]’: ../pair_lj_cut_tip4p_long_omp.cpp:456:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_cut_tip4p_long_omp.cpp:455:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_tip4p_long_omp.cpp:384:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:380:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:464:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut_tip4p_long_omp.cpp:462:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_cut_tip4p_long_omp.cpp:462:15: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_cut_tip4p_long_omp.cpp:464:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid_nph_omp.cpp ../pair_lj_cut_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 1; int = 1; int = 0]’: ../pair_lj_cut_tip4p_long_omp.cpp:470:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_omp.cpp:441:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:437:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:384:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:380:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:464:38: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut_tip4p_long_omp.cpp:462:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_cut_tip4p_long_omp.cpp:462:15: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_cut_tip4p_long_omp.cpp:464:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_cut_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart(FILE*)’: ../pair_lj_cut_coul_long_soft.cpp:799:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_soft.cpp:803:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_soft.cpp:804:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_soft.cpp:805:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_soft.cpp:806:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart_settings(FILE*)’: ../pair_lj_cut_coul_long_soft.cpp:840:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_soft.cpp:841:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphalj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_soft.cpp:842:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_soft.cpp:844:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_soft.cpp:845:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_soft.cpp:846:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_soft.cpp:847:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_soft.cpp:848:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 1; int = 0; int = 1]’: ../pair_lj_cut_tip4p_long_omp.cpp:455:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_tip4p_long_omp.cpp:384:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:380:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:456:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_coul_long_soft.cpp: In member function ‘virtual double LAMMPS_NS::PairLJCutCoulLongSoft::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_cut_coul_long_soft.cpp:930:31: warning: ‘denlj’ may be used uninitialized in this function [-Wmaybe-uninitialized] (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype]; ~~~^~~~~~ ../pair_lj_cut_coul_long_soft.cpp:922:15: warning: ‘denc’ may be used uninitialized in this function [-Wmaybe-uninitialized] prefactor = force->qqrd2e * lj1[itype][jtype] * atom->q[i]*atom->q[j] / denc; ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_soft.cpp:923:13: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*erfc; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 1; int = 0; int = 0]’: ../pair_lj_cut_tip4p_long_omp.cpp:470:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_omp.cpp:437:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:384:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:380:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:441:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_cut_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulLongSoft::compute_outer(int, int)’: ../pair_lj_cut_coul_long_soft.cpp:495:24: warning: ‘denc’ may be used uninitialized in this function [-Wmaybe-uninitialized] eprefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc; ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_soft.cpp:496:19: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = eprefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_soft.cpp:512:66: warning: ‘fprefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) forcecoul -= (1.0-factor_coul)*fprefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../pair_lj_cut_coul_long_soft.cpp:511:58: warning: ‘expm2’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2); ^ ../pair_lj_cut_coul_long_soft.cpp:511:53: warning: ‘grij’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2); ^ ../pair_lj_cut_coul_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulLongSoft::compute(int, int)’: ../pair_lj_cut_coul_long_soft.cpp:177:39: warning: ‘denlj’ may be used uninitialized in this function [-Wmaybe-uninitialized] (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype]; ~~~^~~~~~ ../pair_lj_cut_coul_long_soft.cpp:170:23: warning: ‘denc’ may be used uninitialized in this function [-Wmaybe-uninitialized] prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc; ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long_soft.cpp:171:19: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 0; int = 0; int = 0]’: ../pair_lj_cut_tip4p_long_omp.cpp:441:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:437:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:384:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:380:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_cosine_squared_omp.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 0; int = 1; int = 1; int = 1]’: ../pair_lj_cut_tip4p_long_omp.cpp:384:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:380:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:456:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_cut_tip4p_long_omp.cpp:455:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 0; int = 1; int = 1; int = 0]’: ../pair_lj_cut_tip4p_long_omp.cpp:470:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_omp.cpp:437:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:384:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:380:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:441:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_coul_cut_soft.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2003:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1999:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 0; int = 1; int = 0; int = 1]’: ../pair_lj_cut_tip4p_long_omp.cpp:455:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_tip4p_long_omp.cpp:384:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:380:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:456:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]’: ../pair_lj_long_tip4p_long_omp.cpp:2003:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1999:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 0; int = 1; int = 0; int = 0]’: ../pair_lj_cut_tip4p_long_omp.cpp:470:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_omp.cpp:437:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:384:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:380:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:441:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_cut_coul_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart(FILE*)’: ../pair_lj_cut_coul_cut_soft.cpp:381:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut_soft.cpp:385:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut_soft.cpp:386:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut_soft.cpp:387:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut_soft.cpp:388:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut_soft.cpp:389:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart_settings(FILE*)’: ../pair_lj_cut_coul_cut_soft.cpp:424:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut_soft.cpp:425:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphalj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut_soft.cpp:426:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut_soft.cpp:428:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut_soft.cpp:429:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut_soft.cpp:430:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut_soft.cpp:431:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut_soft.cpp:432:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 0; int = 0; int = 0; int = 0]’: ../pair_lj_cut_tip4p_long_omp.cpp:441:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:437:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:384:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_long_omp.cpp:380:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_cut_coul_cut_soft.cpp: In member function ‘virtual double LAMMPS_NS::PairLJCutCoulCutSoft::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_cut_coul_cut_soft.cpp:498:31: warning: ‘denlj’ may be used uninitialized in this function [-Wmaybe-uninitialized] (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype]; ~~~^~~~~~ ../pair_lj_cut_coul_cut_soft.cpp:493:13: warning: ‘denc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = force->qqrd2e * lj1[itype][jtype] * atom->q[i]*atom->q[j] / denc; ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_cut_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulCutSoft::compute(int, int)’: ../pair_lj_cut_coul_cut_soft.cpp:149:39: warning: ‘denlj’ may be used uninitialized in this function [-Wmaybe-uninitialized] (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype]; ~~~^~~~~~ ../pair_lj_cut_coul_cut_soft.cpp:145:19: warning: ‘denc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = factor_coul * qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../msm_cg_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_erotate_asphere.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_multi_lucy.cpp ../compute_erotate_asphere.cpp: In member function ‘virtual double LAMMPS_NS::ComputeERotateAsphere::compute_scalar()’: ../compute_erotate_asphere.cpp:139:35: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertia[0] = tbonus[tri[i]].inertia[0]; ^ ../compute_erotate_asphere.cpp:130:32: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] length = lbonus[line[i]].length; ^ ../compute_erotate_asphere.cpp:109:36: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ^ ../pair_multi_lucy.cpp: In member function ‘void LAMMPS_NS::PairMultiLucy::read_table(LAMMPS_NS::PairMultiLucy::Table*, char*, char*)’: ../pair_multi_lucy.cpp:366:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ ../pair_multi_lucy.cpp:368:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_multi_lucy.cpp:369:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_multi_lucy.cpp:375:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_multi_lucy.cpp:388:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_multi_lucy.cpp:390:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../pair_multi_lucy.cpp: In member function ‘virtual void LAMMPS_NS::PairMultiLucy::read_restart_settings(FILE*)’: ../pair_multi_lucy.cpp:709:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_multi_lucy.cpp:710:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_class2.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_momentum.cpp ../pair_multi_lucy.cpp: In member function ‘virtual void LAMMPS_NS::PairMultiLucy::compute(int, int)’: ../pair_multi_lucy.cpp:178:24: warning: ‘fpair’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[i][2] += delz*fpair; ~~~~^~~~~~ ../pair_multi_lucy.cpp:190:45: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (rho[i]*rho[i] < tb->innersq || rho[j]*rho[j] < tb->innersq) ^ ../angle_class2.cpp: In member function ‘virtual void LAMMPS_NS::AngleClass2::read_restart(FILE*)’: ../angle_class2.cpp:376:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2.cpp:377:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2.cpp:378:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2.cpp:379:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2.cpp:381:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb_k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2.cpp:382:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb_r1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2.cpp:383:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2.cpp:385:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_k1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2.cpp:386:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2.cpp:387:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2.cpp:388:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_meam_spline_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_temp_region_eff.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_sph_lj.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../ntopo_angle_template.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_neigh_history_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../msm_cg.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_deposit.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_wall_gran_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_heat.cpp ../fix_deposit.cpp: In member function ‘virtual void LAMMPS_NS::FixDeposit::pre_exchange()’: ../fix_deposit.cpp:560:29: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] fixshake->set_molecule(nlocalprev,maxtag_all,imol,coord,vnew,quat); ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../meam_force.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nve_limit.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_harmonic_omp.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid_small_omp.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2003:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1999:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../imbalance_var.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2003:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1999:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_born.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_temp_eff.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../fix_rigid_small_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidSmallOMP::set_xv_thr() [with int = 1; int = 1]’: ../fix_rigid_small_omp.cpp:438:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_small_omp.cpp:433:25: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] lbonus[line[i]].theta = theta; ../fix_rigid_small_omp.cpp:418:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ../pair_born.cpp: In member function ‘virtual void LAMMPS_NS::PairBorn::read_restart(FILE*)’: ../pair_born.cpp:334:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born.cpp:338:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born.cpp:339:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born.cpp:340:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born.cpp:341:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born.cpp:342:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born.cpp:343:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born.cpp: In member function ‘virtual void LAMMPS_NS::PairBorn::read_restart_settings(FILE*)’: ../pair_born.cpp:374:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born.cpp:375:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born.cpp:376:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born.cpp:377:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../fix_rigid_small_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidSmallOMP::set_xv_thr() [with int = 1; int = 0]’: ../fix_rigid_small_omp.cpp:438:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_small_omp.cpp:433:25: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] lbonus[line[i]].theta = theta; ../fix_rigid_small_omp.cpp:418:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ../fix_rigid_small_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidSmallOMP::set_xv_thr() [with int = 0; int = 1]’: ../fix_rigid_small_omp.cpp:438:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_small_omp.cpp:433:25: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] lbonus[line[i]].theta = theta; ../fix_rigid_small_omp.cpp:418:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_tip4p_long.cpp ../fix_rigid_small_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidSmallOMP::set_xv_thr() [with int = 0; int = 0]’: ../fix_rigid_small_omp.cpp:438:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_small_omp.cpp:433:25: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] lbonus[line[i]].theta = theta; ../fix_rigid_small_omp.cpp:418:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../fix_rigid_small_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidSmallOMP::set_v_thr() [with int = 1; int = 1]’: ../fix_rigid_small_omp.cpp:612:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_small_omp.cpp:599:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ../fix_rigid_small_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidSmallOMP::set_v_thr() [with int = 0; int = 1]’: ../fix_rigid_small_omp.cpp:612:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_small_omp.cpp:599:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ../fix_rigid_small_omp.cpp: In member function ‘void LAMMPS_NS::FixRigidSmallOMP::set_v_thr() [with int = 0; int = 0]’: ../fix_rigid_small_omp.cpp:612:38: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ../fix_rigid_small_omp.cpp:599:38: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_cut_omp.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2003:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1999:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_meso_e_atom.cpp ../pair_lj_cut_tip4p_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTIP4PLong::read_restart_settings(FILE*)’: ../pair_lj_cut_tip4p_long.cpp:537:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long.cpp:538:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long.cpp:539:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long.cpp:540:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long.cpp:541:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long.cpp:543:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long.cpp:544:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long.cpp:545:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long.cpp:546:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long.cpp:547:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long.cpp:548:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long.cpp:549:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2003:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1999:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_cut_tip4p_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTIP4PLong::compute(int, int)’: ../pair_lj_cut_tip4p_long.cpp:415:21: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long.cpp:415:21: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_cut_tip4p_long.cpp:417:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_long.cpp:410:24: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ~~~~~~~~~~~^~~~~ ../pair_lj_cut_tip4p_long.cpp:409:24: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ~~~~~~~~~~~^~~~~ ../pair_lj_cut_tip4p_long.cpp:337:18: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fH[0]; ^ ../pair_lj_cut_tip4p_long.cpp:333:18: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fH[0]; ^ ../pair_lj_cut_tip4p_long.cpp:417:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../memory.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_addtorque.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_cosine_squared.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_aveforce.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../angle_cosine_squared.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosineSquared::read_restart(FILE*)’: ../angle_cosine_squared.cpp:219:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_cosine_squared.cpp:220:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_viscosity.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_class2.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2003:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1999:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_centro_atom.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2003:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1999:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../dihedral_class2.cpp: In member function ‘virtual void LAMMPS_NS::DihedralClass2::read_restart(FILE*)’: ../dihedral_class2.cpp:840:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:841:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:842:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:843:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&phi1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:844:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&phi2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:845:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&phi3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:847:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mbt_f1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:848:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mbt_f2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:849:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mbt_f3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:850:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mbt_r0[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:852:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f1_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:853:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f2_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:854:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f3_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:855:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_r0_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:857:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f1_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:858:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f2_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:859:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f3_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:860:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_r0_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:862:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_f1_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:863:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_f2_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:864:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_f3_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:865:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:867:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_f1_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:868:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_f2_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:869:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_f3_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:870:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&at_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:872:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aat_k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:873:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aat_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:874:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&aat_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:876:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb13t_k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:877:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb13t_r10[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_class2.cpp:878:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb13t_r30[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_half_multi_3d_newton.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_oxdna2_stk.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_global_atom.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_gw.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_aggregate_atom.cpp ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:2035:40: warning: ‘key’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long_omp.cpp:1961:26: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = iH2; ../pair_lj_long_tip4p_long_omp.cpp:2031:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp:2030:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2003:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1999:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../compute_global_atom.cpp: In member function ‘virtual void LAMMPS_NS::ComputeGlobalAtom::compute_peratom()’: ../compute_global_atom.cpp:513:29: warning: ‘vmax’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (j >= 0 && j < vmax) vector_atom[i] = source[j]; ~~^~~~~~ ../compute_global_atom.cpp:444:29: warning: ‘vmax’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (j >= 0 && j < vmax) vector_atom[i] = source[j]; ~~^~~~~~ ../pair_lj_long_tip4p_long_omp.cpp: In member function ‘void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]’: ../pair_lj_long_tip4p_long_omp.cpp:2003:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1999:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1933:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_long_tip4p_long_omp.cpp:1929:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_neigh_history.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_comb_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../manifold_torus.cpp In file included from ../fix_neigh_history.cpp:17:0: ../fix_neigh_history.h: In constructor ‘LAMMPS_NS::FixNeighHistory::FixNeighHistory(LAMMPS_NS::LAMMPS*, int, char**)’: ../fix_neigh_history.h:76:12: warning: ‘LAMMPS_NS::FixNeighHistory::valuepartner’ will be initialized after [-Wreorder] double **valuepartner; // values for the partners ^~~~~~~~~~~~ ../fix_neigh_history.h:34:15: warning: ‘LAMMPS_NS::Pair* LAMMPS_NS::FixNeighHistory::pair’ [-Wreorder] class Pair *pair; // ptr to pair style that uses neighbor history ^~~~ ../fix_neigh_history.cpp:36:1: warning: when initialized here [-Wreorder] FixNeighHistory::FixNeighHistory(LAMMPS *lmp, int narg, char **arg) : ^~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_bond_break.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_imd.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_tip4p_cut.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_harmonic.cpp ../pair_lj_cut_tip4p_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTIP4PCut::read_restart(FILE*)’: ../pair_lj_cut_tip4p_cut.cpp:621:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_cut.cpp:625:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_cut.cpp:626:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_cut.cpp:627:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTIP4PCut::read_restart_settings(FILE*)’: ../pair_lj_cut_tip4p_cut.cpp:663:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_cut.cpp:664:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_cut.cpp:665:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_cut.cpp:666:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_cut.cpp:667:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_cut.cpp:669:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_cut.cpp:670:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_cut.cpp:671:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_cut.cpp:672:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_tip4p_cut.cpp:673:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::DihedralHarmonic::read_restart(FILE*)’: ../dihedral_harmonic.cpp:333:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_harmonic.cpp:334:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sign[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_harmonic.cpp:335:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid_small.cpp ../pair_lj_cut_tip4p_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutTIP4PCut::compute(int, int)’: ../pair_lj_cut_tip4p_cut.cpp:378:24: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ~~~~~~~~~~~^~~~~ ../pair_lj_cut_tip4p_cut.cpp:377:24: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ~~~~~~~~~~~^~~~~ ../pair_lj_cut_tip4p_cut.cpp:305:18: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fH[0]; ^ ../pair_lj_cut_tip4p_cut.cpp:301:18: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fH[0]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_coul_long.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_eam_alloy_opt.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_oxdna2_dh.cpp ../fix_rigid_small.cpp: In member function ‘virtual void LAMMPS_NS::FixRigidSmall::init()’: ../fix_rigid_small.cpp:572:78: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘char*’ [-Wformat=] sprintf(str,"Fix %d alters forces after fix rigid",modify->fix[i]->id); ~~~~~~~~~~~~~~~~~~^ ../pair_lj_cut_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart(FILE*)’: ../pair_lj_cut_coul_long.cpp:800:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long.cpp:804:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long.cpp:805:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long.cpp:806:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart_settings(FILE*)’: ../pair_lj_cut_coul_long.cpp:837:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long.cpp:838:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long.cpp:839:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long.cpp:840:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long.cpp:841:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long.cpp:842:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long.cpp:843:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long.cpp: In member function ‘virtual double LAMMPS_NS::PairLJCutCoulLong::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_cut_coul_long.cpp:934:37: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_cut_coul_long.cpp:926:28: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ ../pair_lj_cut_coul_long.cpp:926:40: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long.cpp:929:56: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_coul_long.cpp:924:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*erfc; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_oxdna2_dh.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdna2Dh::init_style()’: ../pair_oxdna2_dh.cpp:372:7: warning: variable ‘irequest’ set but not used [-Wunused-but-set-variable] int irequest; ^~~~~~~~ ../pair_lj_cut_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulLong::compute_outer(int, int)’: ../pair_lj_cut_coul_long.cpp:537:45: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcecoul = prefactor * (erfc + EWALD_F*grij*expm2); ~~~~~~^~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long.cpp:514:64: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_coul_long.cpp:537:59: warning: ‘expm2’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcecoul = prefactor * (erfc + EWALD_F*grij*expm2); ^ ../pair_lj_cut_coul_long.cpp:537:54: warning: ‘grij’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcecoul = prefactor * (erfc + EWALD_F*grij*expm2); ^ ../pair_lj_cut_coul_long.cpp:543:50: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = ptable[itable] + fraction*dptable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long.cpp:540:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = vtable[itable] + fraction*dvtable[itable]; ^ ../pair_oxdna2_dh.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdna2Dh::read_restart(FILE*)’: ../pair_oxdna2_dh.cpp:458:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_dh.cpp:463:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa_dh[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_dh.cpp:464:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qeff_dh_pf[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_dh.cpp:465:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_dh[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_dh.cpp:466:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_dh_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_dh.cpp:467:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_dh_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_dh.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdna2Dh::read_restart_settings(FILE*)’: ../pair_oxdna2_dh.cpp:500:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_dh.cpp:501:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_dh.cpp:502:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulLong::compute(int, int)’: ../pair_lj_cut_coul_long.cpp:183:21: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long.cpp:188:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_coul_long.cpp:192:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_cut_coul_long.cpp:185:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_long.cpp:185:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../ntopo.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_map.cpp ../fix_rigid_small.cpp: In member function ‘virtual void LAMMPS_NS::FixRigidSmall::write_restart_file(char*)’: ../fix_rigid_small.cpp:2702:22: warning: ‘fp’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (me == 0) fclose(fp); ~~~~~~^~~~ ../fix_rigid_small.cpp: In member function ‘void LAMMPS_NS::FixRigidSmall::set_xv()’: ../fix_rigid_small.cpp:1364:36: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ^ ../fix_rigid_small.cpp:1359:23: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] lbonus[line[i]].theta = theta; ^ ../fix_rigid_small.cpp:1344:36: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ^ ../fix_rigid_small.cpp: In member function ‘void LAMMPS_NS::FixRigidSmall::set_v()’: ../fix_rigid_small.cpp:1502:36: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ^ ../fix_rigid_small.cpp:1489:36: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ^ ../fix_rigid_small.cpp: In member function ‘void LAMMPS_NS::FixRigidSmall::setup_bodies_dynamic()’: ../fix_rigid_small.cpp:2422:34: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] radone = lbonus[line[i]].length; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_full_nsq_ghost.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../ewald_disp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_com.cpp ../fix_rigid_small.cpp: In constructor ‘LAMMPS_NS::FixRigidSmall::FixRigidSmall(LAMMPS_NS::LAMMPS*, int, char**)’: ../fix_rigid_small.cpp:496:57: warning: ‘seed’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (langflag) random = new RanMars(lmp,seed + comm->me); ^ ../npair_full_nsq_ghost.cpp: In member function ‘virtual void LAMMPS_NS::NPairFullNsqGhost::build(LAMMPS_NS::NeighList*)’: ../npair_full_nsq_ghost.cpp:102:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_full_nsq_ghost.cpp:103:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_full_nsq_ghost.cpp:103:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../timer.cpp ../fix_rigid_small.cpp: In member function ‘void LAMMPS_NS::FixRigidSmall::readfile(int, double**, int*)’: ../fix_rigid_small.cpp:2508:13: warning: ‘fp’ may be used uninitialized in this function [-Wmaybe-uninitialized] eofflag = comm->read_lines_from_file(fp,nchunk,MAXLINE,buffer); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_vashishta_table_omp.cpp ../fix_rigid_small.cpp: In member function ‘void LAMMPS_NS::FixRigidSmall::setup_bodies_static()’: ../fix_rigid_small.cpp:2306:31: warning: ‘inbody’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (infile && inbody[ibody]) continue; ~~~~~~~~~~~~^ ../fix_rigid_small.cpp:2284:36: warning: ‘tbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] inertiaatom = tbonus[tri[i]].inertia; ^ ../fix_rigid_small.cpp:2199:38: warning: ‘lbonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] orient[i][0] = lbonus[line[i]].theta - theta_body; ^ ../fix_rigid_small.cpp:2266:36: warning: ‘ebonus’ may be used uninitialized in this function [-Wmaybe-uninitialized] shape = ebonus[ellipsoid[i]].shape; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_bin_newton_tri.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_debye_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_snav_atom.cpp ../npair_half_bin_newton_tri.cpp: In member function ‘virtual void LAMMPS_NS::NPairHalfBinNewtonTri::build(LAMMPS_NS::NeighList*)’: ../npair_half_bin_newton_tri.cpp:112:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_bin_newton_tri.cpp:113:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_bin_newton_tri.cpp:113:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_msd.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dump_custom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_half_ghost_bin_3d_newtoff.cpp ../dump_custom.cpp: In member function ‘virtual int LAMMPS_NS::DumpCustom::count()’: ../dump_custom.cpp:1029:27: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (choose[i] && (*ptr == 0.0 && values[i] == 0.0) || ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dump_custom.cpp:1034:27: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (choose[i] && (*ptr == 0.0 && value == 0.0) || ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_bond_react.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_tfmc.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../min_quickmin.cpp ../fix_tfmc.cpp: In member function ‘virtual void LAMMPS_NS::FixTFMC::initial_integrate(int)’: ../fix_tfmc.cpp:255:15: warning: ‘masstotal’ may be used uninitialized in this function [-Wmaybe-uninitialized] group->xcm(igroup,masstotal,cm); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_bond_orders_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_box_relax.cpp ../dump_custom.cpp:1035:30: warning: ‘value’ may be used uninitialized in this function [-Wmaybe-uninitialized] (*ptr != 0.0 && value != 0.0)) ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../dump_custom.cpp:532:13: warning: ‘values’ may be used uninitialized in this function [-Wmaybe-uninitialized] double *values; ^~~~~~ ../dump_custom.cpp:1044:42: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] for (i = 0; i < nlocal; i++, ptr += nstride) values[i] = *ptr; ~~~~^~~~~~~~~~ In file included from ../fix_bond_react.cpp:38:0: ../memory.h: In member function ‘void LAMMPS_NS::FixBondReact::dedup_mega_gloves(int)’: ../memory.h:120:49: warning: ‘dedup_size’ may be used uninitialized in this function [-Wmaybe-uninitialized] bigint nbytes = ((bigint) sizeof(TYPE)) * n1*n2; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ ../fix_bond_react.cpp:1509:7: note: ‘dedup_size’ was declared here int dedup_size; ^~~~~~~~~~ ../fix_bond_react.cpp: In member function ‘void LAMMPS_NS::FixBondReact::limit_bond(int)’: ../fix_bond_react.cpp:1685:15: warning: ‘temp_limit_glove’ may be used uninitialized in this function [-Wmaybe-uninitialized] delete [] temp_limit_glove; ^~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_cosine_shift_exp_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_hydrogen_bonds_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../meam_setup_global.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_charmmfsw.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_temp_rotate.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lubricateU_poly.cpp ../dihedral_charmmfsw.cpp: In member function ‘virtual void LAMMPS_NS::DihedralCharmmfsw::read_restart(FILE*)’: ../dihedral_charmmfsw.cpp:472:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_charmmfsw.cpp:473:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_charmmfsw.cpp:474:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_charmmfsw.cpp:475:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&weight[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_charmmfsw.cpp:476:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&weightflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_list.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_oxdna2_coaxstk.cpp ../pair_oxdna2_coaxstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdna2Coaxstk::compute(int, int)’: ../pair_oxdna2_coaxstk.cpp:106:18: warning: unused variable ‘delt’ [-Wunused-variable] double delf[3],delt[3],delta[3],deltb[3]; // force, torque increment; ^~~~ ../pair_oxdna2_coaxstk.cpp:108:19: warning: unused variable ‘v2tmp’ [-Wunused-variable] double v1tmp[3],v2tmp[3],v3tmp[3]; ^~~~~ ../pair_oxdna2_coaxstk.cpp:108:28: warning: unused variable ‘v3tmp’ [-Wunused-variable] double v1tmp[3],v2tmp[3],v3tmp[3]; ^~~~~ ../pair_oxdna2_coaxstk.cpp:117:10: warning: unused variable ‘gamma’ [-Wunused-variable] double gamma,gammacub,rinv_ss_cub,fac; ^~~~~ ../pair_oxdna2_coaxstk.cpp:117:16: warning: unused variable ‘gammacub’ [-Wunused-variable] double gamma,gammacub,rinv_ss_cub,fac; ^~~~~~~~ ../pair_oxdna2_coaxstk.cpp:117:25: warning: unused variable ‘rinv_ss_cub’ [-Wunused-variable] double gamma,gammacub,rinv_ss_cub,fac; ^~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:117:37: warning: unused variable ‘fac’ [-Wunused-variable] double gamma,gammacub,rinv_ss_cub,fac; ^~~ ../pair_oxdna2_coaxstk.cpp:118:10: warning: unused variable ‘aybx’ [-Wunused-variable] double aybx,azbx,rax,ray,raz,rbx; ^~~~ ../pair_oxdna2_coaxstk.cpp:118:15: warning: unused variable ‘azbx’ [-Wunused-variable] double aybx,azbx,rax,ray,raz,rbx; ^~~~ ../pair_oxdna2_coaxstk.cpp:118:20: warning: unused variable ‘rax’ [-Wunused-variable] double aybx,azbx,rax,ray,raz,rbx; ^~~ ../pair_oxdna2_coaxstk.cpp:118:24: warning: unused variable ‘ray’ [-Wunused-variable] double aybx,azbx,rax,ray,raz,rbx; ^~~ ../pair_oxdna2_coaxstk.cpp:118:28: warning: unused variable ‘raz’ [-Wunused-variable] double aybx,azbx,rax,ray,raz,rbx; ^~~ ../pair_oxdna2_coaxstk.cpp:118:32: warning: unused variable ‘rbx’ [-Wunused-variable] double aybx,azbx,rax,ray,raz,rbx; ^~~ ../pair_oxdna2_coaxstk.cpp:119:10: warning: unused variable ‘dcdr’ [-Wunused-variable] double dcdr,dcdrbx; ^~~~ ../pair_oxdna2_coaxstk.cpp:119:15: warning: unused variable ‘dcdrbx’ [-Wunused-variable] double dcdr,dcdrbx; ^~~~~~ ../pair_oxdna2_coaxstk.cpp:120:10: warning: unused variable ‘dcdaxbx’ [-Wunused-variable] double dcdaxbx,dcdaybx,dcdazbx; ^~~~~~~ ../pair_oxdna2_coaxstk.cpp:120:18: warning: unused variable ‘dcdaybx’ [-Wunused-variable] double dcdaxbx,dcdaybx,dcdazbx; ^~~~~~~ ../pair_oxdna2_coaxstk.cpp:120:26: warning: unused variable ‘dcdazbx’ [-Wunused-variable] double dcdaxbx,dcdaybx,dcdazbx; ^~~~~~~ ../pair_oxdna2_coaxstk.cpp:121:10: warning: unused variable ‘dcdrax’ [-Wunused-variable] double dcdrax,dcdray,dcdraz; ^~~~~~ ../pair_oxdna2_coaxstk.cpp:121:17: warning: unused variable ‘dcdray’ [-Wunused-variable] double dcdrax,dcdray,dcdraz; ^~~~~~ ../pair_oxdna2_coaxstk.cpp:121:24: warning: unused variable ‘dcdraz’ [-Wunused-variable] double dcdrax,dcdray,dcdraz; ^~~~~~ ../pair_oxdna2_coaxstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdna2Coaxstk::init_style()’: ../pair_oxdna2_coaxstk.cpp:691:7: warning: variable ‘irequest’ set but not used [-Wunused-but-set-variable] int irequest; ^~~~~~~~ ../pair_oxdna2_coaxstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdna2Coaxstk::read_restart(FILE*)’: ../pair_oxdna2_coaxstk.cpp:838:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:843:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k_cxst[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:844:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:845:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:846:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:847:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:848:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:849:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:850:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:851:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:853:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:854:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst1_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:855:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:856:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:857:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:859:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../tad.cpp ../pair_oxdna2_coaxstk.cpp:860:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:861:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:862:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:863:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:865:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:866:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst5_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:867:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst5_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:868:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:869:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst5_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:871:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:872:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst6_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:873:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst6_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:874:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:875:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst6_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:877:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&AA_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:878:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&BB_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdna2Coaxstk::read_restart_settings(FILE*)’: ../pair_oxdna2_coaxstk.cpp:942:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:943:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna2_coaxstk.cpp:944:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_coul_wolf_omp.cpp ../pair_lj_cut_coul_wolf_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulWolfOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_cut_coul_wolf_omp.cpp:182:60: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_coul_wolf_omp.cpp:175:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix.cpp ../pair_lj_cut_coul_wolf_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutCoulWolfOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_cut_coul_wolf_omp.cpp:182:60: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_cut_coul_wolf_omp.cpp:175:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nph_asphere_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_ave_correlate.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_coord_atom.cpp ../fix_ave_correlate.cpp: In member function ‘virtual void LAMMPS_NS::FixAveCorrelate::end_of_step()’: ../fix_ave_correlate.cpp:537:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pppm_tip4p_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid_nvt_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_respa_bin_newtoff_omp.cpp ../fix_ave_correlate.cpp:482:26: warning: ‘scalar’ may be used uninitialized in this function [-Wmaybe-uninitialized] values[lastindex][i] = scalar; ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_reduce.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_mvv_dpd.cpp ../npair_half_respa_bin_newtoff_omp.cpp: In function ‘_ZN9LAMMPS_NS27NPairHalfRespaBinNewtoffOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_half_respa_bin_newtoff_omp.cpp:148:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_bin_newtoff_omp.cpp:55:54: note: ‘iatom’ was declared here int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom; ^~~~~ ../npair_half_respa_bin_newtoff_omp.cpp:147:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_respa_bin_newtoff_omp.cpp:56:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_half_respa_bin_newtoff_omp.cpp:148:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_bin_newtoff_omp.cpp:55:49: note: ‘imol’ was declared here int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom; ^~~~ ../npair_half_respa_bin_newtoff_omp.cpp:166:53: warning: ‘n_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ~~~~~~~~^~ ../npair_half_respa_bin_newtoff_omp.cpp:55:40: note: ‘n_middle’ was declared here int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom; ^~~~~~~~ ../npair_half_respa_bin_newtoff_omp.cpp:166:55: warning: ‘neighptr_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ^ ../npair_half_respa_bin_newtoff_omp.cpp:58:34: note: ‘neighptr_middle’ was declared here int *neighptr,*neighptr_inner,*neighptr_middle; ^~~~~~~~~~~~~~~ In file included from ../neigh_list.h:18:0, from ../npair_half_respa_bin_newtoff_omp.cpp:17: ../my_page.h:224:9: warning: ‘ipage_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] errorflag = 2; ^~~~~~~~~ ../npair_half_respa_bin_newtoff_omp.cpp:95:16: note: ‘ipage_middle’ was declared here MyPage *ipage_middle; ^~~~~~~~~~~~ ../npair_half_respa_bin_newtoff_omp.cpp:192:26: warning: ‘numneigh_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] numneigh_middle[i] = n_middle; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../npair_half_respa_bin_newtoff_omp.cpp:82:22: note: ‘numneigh_middle’ was declared here int *ilist_middle,*numneigh_middle,**firstneigh_middle; ^~~~~~~~~~~~~~~ ../npair_half_respa_bin_newtoff_omp.cpp:191:28: warning: ‘firstneigh_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] firstneigh_middle[i] = neighptr_middle; ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ../npair_half_respa_bin_newtoff_omp.cpp:82:40: note: ‘firstneigh_middle’ was declared here int *ilist_middle,*numneigh_middle,**firstneigh_middle; ^~~~~~~~~~~~~~~~~ ../npair_half_respa_bin_newtoff_omp.cpp:190:23: warning: ‘ilist_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] ilist_middle[i] = i; ~~~~~~~~~~~~~~~~^~~ ../npair_half_respa_bin_newtoff_omp.cpp:82:8: note: ‘ilist_middle’ was declared here int *ilist_middle,*numneigh_middle,**firstneigh_middle; ^~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_nharmonic_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../velocity.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_vashishta_table.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nh_uef.cpp ../velocity.cpp: In member function ‘void LAMMPS_NS::Velocity::set(int, char**)’: ../velocity.cpp:544:29: warning: ‘zvar’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (zstyle == EQUAL) vz = input->variable->compute_equal(zvar); ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../velocity.cpp:539:29: warning: ‘yvar’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (ystyle == EQUAL) vy = input->variable->compute_equal(yvar); ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../velocity.cpp:534:29: warning: ‘xvar’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (xstyle == EQUAL) vx = input->variable->compute_equal(xvar); ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../velocity.cpp:526:31: warning: ‘vz’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (zstyle) v[i][2] += vz; ~~~~~~~~^~~~~ ../velocity.cpp:525:31: warning: ‘vy’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (ystyle) v[i][1] += vy; ~~~~~~~~^~~~~ ../velocity.cpp:520:31: warning: ‘vx’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (xstyle) v[i][0] = vx; ~~~~~~~~^~~~ ../velocity.cpp: In member function ‘void LAMMPS_NS::Velocity::ramp(int, char**)’: ../velocity.cpp:650:3: warning: ‘v_dim’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (v_dim == 2 && domain->dimension == 2) ^~ ../velocity.cpp:672:3: warning: ‘coord_dim’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (coord_dim == 0) { ^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../domain.cpp In file included from ../velocity.cpp:34:0: ../memory.h: In member function ‘void LAMMPS_NS::Velocity::create(double, int)’: ../memory.h:173:5: warning: ‘vhold’ may be used uninitialized in this function [-Wmaybe-uninitialized] sfree(array); ^~~~~ ../velocity.cpp:168:12: note: ‘vhold’ was declared here double **vhold; ^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_temp_csld.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_erotate_sphere.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_bond_orders.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_meso_stationary.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_deprecated.cpp ../domain.cpp: In member function ‘void LAMMPS_NS::Domain::box_too_small_check()’: ../domain.cpp:857:43: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (onemols[imol]->bond_type[iatom][j] < 0) continue; ^ ../domain.cpp:857:25: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (onemols[imol]->bond_type[iatom][j] < 0) continue; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../region_union.cpp ../domain.cpp: In member function ‘void LAMMPS_NS::Domain::image_check()’: ../domain.cpp:758:43: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (onemols[imol]->bond_type[iatom][j] < 0) continue; ^ ../domain.cpp:758:25: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (onemols[imol]->bond_type[iatom][j] < 0) continue; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_half_bin_2d_newton_ssa.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../neighbor.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_qeq_reax_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_tip4p_long_soft_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_vector.cpp ../fix_qeq_reax_omp.cpp: In member function ‘virtual void LAMMPS_NS::FixQEqReaxOMP::pre_force(int)’: ../fix_qeq_reax_omp.cpp:351:22: warning: ‘t_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] qeq_time = t_end - t_start; ~~~~~~^~~~~~~~~ ../pair_tip4p_long_soft_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 1; int = 1]’: ../pair_tip4p_long_soft_omp.cpp:408:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_tip4p_long_soft_omp.cpp:407:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_tip4p_long_soft_omp.cpp:332:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_long_soft_omp.cpp:328:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../fix_vector.cpp: In constructor ‘LAMMPS_NS::FixVector::FixVector(LAMMPS_NS::LAMMPS*, int, char**)’: ../fix_vector.cpp:149:14: warning: ‘finalvalue’ may be used uninitialized in this function [-Wmaybe-uninitialized] extarray = finalvalue; ~~~~~~~~~^~~~~~~~~~~~ ../fix_vector.cpp:138:10: warning: ‘value’ may be used uninitialized in this function [-Wmaybe-uninitialized] else if (value != finalvalue) ^~ ../pair_tip4p_long_soft_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 1; int = 0]’: ../pair_tip4p_long_soft_omp.cpp:408:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_tip4p_long_soft_omp.cpp:407:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_tip4p_long_soft_omp.cpp:332:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_long_soft_omp.cpp:328:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../read_dump.cpp ../pair_tip4p_long_soft_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 0; int = 1]’: ../pair_tip4p_long_soft_omp.cpp:408:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_tip4p_long_soft_omp.cpp:407:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_tip4p_long_soft_omp.cpp:332:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_long_soft_omp.cpp:328:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_tip4p_long_soft_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 0; int = 0]’: ../pair_tip4p_long_soft_omp.cpp:407:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_tip4p_long_soft_omp.cpp:332:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_long_soft_omp.cpp:328:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_tip4p_long_soft_omp.cpp:408:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../neighbor.cpp: In member function ‘int LAMMPS_NS::Neighbor::choose_stencil(LAMMPS_NS::NeighRequest*)’: ../neighbor.cpp:1675:5: warning: ‘newtflag’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (newtflag) { ^~ ../neighbor.cpp: In member function ‘int LAMMPS_NS::Neighbor::choose_pair(LAMMPS_NS::NeighRequest*)’: ../neighbor.cpp:1783:5: warning: ‘newtflag’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (newtflag) { ^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_temp_deform.cpp ../pair_tip4p_long_soft_omp.cpp: In member function ‘void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 0; int = 0; int = 0]’: ../pair_tip4p_long_soft_omp.cpp:391:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_tip4p_long_soft_omp.cpp:387:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_tip4p_long_soft_omp.cpp:332:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_tip4p_long_soft_omp.cpp:328:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_sdk_coul_long.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../manifold_gaussian_bump.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nph_asphere.cpp ../pair_lj_sdk_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSDKCoulLong::read_restart(FILE*)’: ../pair_lj_sdk_coul_long.cpp:475:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk_coul_long.cpp:479:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lj_type[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk_coul_long.cpp:480:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk_coul_long.cpp:481:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk_coul_long.cpp:482:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJSDKCoulLong::read_restart_settings(FILE*)’: ../pair_lj_sdk_coul_long.cpp:514:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk_coul_long.cpp:515:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk_coul_long.cpp:516:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk_coul_long.cpp:517:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk_coul_long.cpp:518:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk_coul_long.cpp:519:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_sdk_coul_long.cpp:520:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_nm_cut_omp.cpp ../manifold_gaussian_bump.cpp: In constructor ‘cubic_hermite::cubic_hermite(double, double, double, double, double, double, LAMMPS_NS::Error*)’: ../manifold_gaussian_bump.cpp:22:31: warning: ‘cubic_hermite::yp1’ will be initialized after [-Wreorder] double x0, x1, y0, y1, yp0, yp1; ^~~ ../manifold_gaussian_bump.cpp:18:10: warning: ‘double cubic_hermite::a’ [-Wreorder] double a, b, c, d; ^ ../manifold_gaussian_bump.cpp:26:3: warning: when initialized here [-Wreorder] cubic_hermite( double x0, double x1, double y0, double y1, ^~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../procmap.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../uef_utils.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_cluster_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pppm_tip4p.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid_nvt.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_respa_bin_newtoff.cpp ../procmap.cpp: In member function ‘void LAMMPS_NS::ProcMap::output(char*, int*, int***)’: ../procmap.cpp:688:16: warning: ‘kme’ may be used uninitialized in this function [-Wmaybe-uninitialized] vec[5] = kme + 1; ~~~~^~~ ../procmap.cpp:687:16: warning: ‘jme’ may be used uninitialized in this function [-Wmaybe-uninitialized] vec[4] = jme + 1; ~~~~^~~ ../procmap.cpp:686:16: warning: ‘ime’ may be used uninitialized in this function [-Wmaybe-uninitialized] vec[3] = ime + 1; ~~~~^~~ ../procmap.cpp: In member function ‘int LAMMPS_NS::ProcMap::best_factors(int, int**, int*, int, int, int)’: ../procmap.cpp:882:10: warning: ‘index’ may be used uninitialized in this function [-Wmaybe-uninitialized] return index; ^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_charmm_coul_charmm_omp.cpp ../npair_half_respa_bin_newtoff.cpp: In member function ‘virtual void LAMMPS_NS::NPairHalfRespaBinNewtoff::build(LAMMPS_NS::NeighList*)’: ../npair_half_respa_bin_newtoff.cpp:149:55: warning: ‘neighptr_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ^ ../npair_half_respa_bin_newtoff.cpp:130:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_respa_bin_newtoff.cpp:131:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_bin_newtoff.cpp:131:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_bin_newtoff.cpp:149:53: warning: ‘n_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ~~~~~~~~^~ In file included from ../neigh_list.h:18:0, from ../npair_half_respa_bin_newtoff.cpp:16: ../my_page.h:172:12: warning: ‘ipage_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] ndatum += n; ~~~~~~~^~~~ ../npair_half_respa_bin_newtoff.cpp:72:16: note: ‘ipage_middle’ was declared here MyPage *ipage_middle; ^~~~~~~~~~~~ ../npair_half_respa_bin_newtoff.cpp:174:28: warning: ‘firstneigh_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] firstneigh_middle[i] = neighptr_middle; ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ../npair_half_respa_bin_newtoff.cpp:175:26: warning: ‘numneigh_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] numneigh_middle[i] = n_middle; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../npair_half_respa_bin_newtoff.cpp:173:26: warning: ‘ilist_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] ilist_middle[inum] = i; ~~~~~~~~~~~~~~~~~~~^~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_orient_bcc.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_buck6d_coul_gauss_dsf.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_meamc.cpp ../pair_lj_charmm_coul_charmm_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCharmmCoulCharmmOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_charmm_coul_charmm_omp.cpp:182:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]); ../pair_lj_charmm_coul_charmm_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCharmmCoulCharmmOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_charmm_coul_charmm_omp.cpp:182:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]); ../pair_buck6d_coul_gauss_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::compute(int, int)’: ../pair_buck6d_coul_gauss_dsf.cpp:86:32: warning: unused variable ‘t’ [-Wunused-variable] double prefactor,erfcc,erfcd,t,arg; ^ ../pair_buck6d_coul_gauss_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::read_restart(FILE*)’: ../pair_buck6d_coul_gauss_dsf.cpp:420:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_dsf.cpp:424:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_dsf.cpp:425:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_dsf.cpp:426:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_dsf.cpp:427:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_dsf.cpp:428:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha_ij[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_dsf.cpp:429:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::read_restart_settings(FILE*)’: ../pair_buck6d_coul_gauss_dsf.cpp:462:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&vdwl_smooth,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_dsf.cpp:463:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_dsf.cpp:464:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_dsf.cpp:465:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_dsf.cpp:466:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_dsf.cpp:467:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_skip.cpp ../pair_buck6d_coul_gauss_dsf.cpp: In member function ‘virtual double LAMMPS_NS::PairBuck6dCoulGaussDSF::single(int, int, int, int, double, double, double, double&)’: ../pair_buck6d_coul_gauss_dsf.cpp:558:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor * (erfcc - r*e_shift_ij[itype][jtype] - ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rsq*f_shift_ij[itype][jtype]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_dsf.cpp:558:34: warning: ‘erfcc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor * (erfcc - r*e_shift_ij[itype][jtype] - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_dsf.cpp:553:15: warning: ‘ebuck6d’ may be used uninitialized in this function [-Wmaybe-uninitialized] phibuck6d = ebuck6d - offset[itype][jtype]; ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::compute(int, int)’: ../pair_buck6d_coul_gauss_dsf.cpp:194:40: warning: ‘erfcc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor * (erfcc - r*e_shift_ij[itype][jtype] - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck6d_coul_gauss_dsf.cpp:196:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_buck6d_coul_gauss_dsf.cpp:189:19: warning: ‘ebuck6d’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = ebuck6d - offset[itype][jtype]; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_meamc.cpp: In member function ‘void LAMMPS_NS::PairMEAMC::read_files(char*, char*)’: ../pair_meamc.cpp:587:32: warning: ‘value’ may be used uninitialized in this function [-Wmaybe-uninitialized] meam_inst->meam_setup_param(which,value,nindex,index,&errorflag); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_plasticity_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../math_special.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_list.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_rebo_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_dpd_fdt.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_skip_respa.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_ave_histo.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_cosine_buck6d.cpp ../pair_dpd_fdt.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDfdt::init_style()’: ../pair_dpd_fdt.cpp:320:7: warning: unused variable ‘irequest’ [-Wunused-variable] int irequest = neighbor->request(this,instance_me); ^~~~~~~~ ../pair_dpd_fdt.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDfdt::read_restart(FILE*)’: ../pair_dpd_fdt.cpp:382:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_fdt.cpp:386:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_fdt.cpp:387:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_fdt.cpp:388:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_fdt.cpp: In member function ‘virtual void LAMMPS_NS::PairDPDfdt::read_restart_settings(FILE*)’: ../pair_dpd_fdt.cpp:417:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&temperature,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_fdt.cpp:418:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_fdt.cpp:419:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dpd_fdt.cpp:420:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../npair_skip_respa.cpp: In member function ‘virtual void LAMMPS_NS::NPairSkipRespa::build(LAMMPS_NS::NeighList*)’: ../npair_skip_respa.cpp:153:26: warning: ‘n_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] numneigh_middle[i] = n_middle; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from ../neigh_list.h:18:0, from ../npair_skip_respa.cpp:16: ../my_page.h:224:9: warning: ‘ipage_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] errorflag = 2; ^~~~~~~~~ ../npair_skip_respa.cpp:64:16: note: ‘ipage_middle’ was declared here MyPage *ipage_middle; ^~~~~~~~~~~~ ../fix_ave_histo.cpp: In member function ‘virtual void LAMMPS_NS::FixAveHisto::end_of_step()’: ../fix_ave_histo.cpp:828:33: warning: ignoring return value of ‘int ftruncate(int, __off_t)’, declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_fene.cpp ../angle_cosine_buck6d.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosineBuck6d::compute(int, int)’: ../angle_cosine_buck6d.cpp:59:7: warning: unused variable ‘i’ [-Wunused-variable] int i,i1,i2,i3,n,type,itype,jtype; ^ ../angle_cosine_buck6d.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosineBuck6d::write_data(FILE*)’: ../angle_cosine_buck6d.cpp:356:61: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘double’ [-Wformat=] fprintf(fp,"%d %g %d %d\n",i,k[i],multiplicity[i],th0[i]); ~~~~~~^ ../angle_cosine_buck6d.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosineBuck6d::read_restart(FILE*)’: ../angle_cosine_buck6d.cpp:337:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_cosine_buck6d.cpp:338:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_cosine_buck6d.cpp:339:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&th0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../displace_atoms.cpp ../angle_cosine_buck6d.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosineBuck6d::compute(int, int)’: ../angle_cosine_buck6d.cpp:181:15: warning: ‘ebuck6d’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = ebuck6d - offset[itype][jtype]; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_cosine_buck6d.cpp:166:11: warning: ‘r32inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] fpair = forcebuck6d * r32inv; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../bond_fene.cpp: In member function ‘virtual void LAMMPS_NS::BondFENE::read_restart(FILE*)’: ../bond_fene.cpp:220:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_fene.cpp:221:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_fene.cpp:222:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_fene.cpp:223:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper_inversion_harmonic.cpp ../fix_ave_histo.cpp: In constructor ‘LAMMPS_NS::FixAveHisto::FixAveHisto(LAMMPS_NS::LAMMPS*, int, char**)’: ../fix_ave_histo.cpp:233:10: warning: ‘kindflag’ may be used uninitialized in this function [-Wmaybe-uninitialized] else if (kindflag != kind) ^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reader_xyz.cpp ../displace_atoms.cpp: In member function ‘void LAMMPS_NS::DisplaceAtoms::command(int, char**)’: ../displace_atoms.cpp:128:5: warning: ‘d_dim’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (d_dim == 0) { ^~ ../displace_atoms.cpp:146:5: warning: ‘coord_dim’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (coord_dim == 0) { ^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_buck_coul_long_omp.cpp ../improper_inversion_harmonic.cpp: In member function ‘void LAMMPS_NS::ImproperInversionHarmonic::invang(const int&, const int&, const int&, const int&, const int&, const int&, const int&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&)’: ../improper_inversion_harmonic.cpp:246:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (evflag) ^~ ../improper_inversion_harmonic.cpp:249:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ rb3y = vb1y - vb2y; ^~~~ ../improper_inversion_harmonic.cpp:142:12: warning: unused variable ‘x’ [-Wunused-variable] double **x = atom->x; ^ ../improper_inversion_harmonic.cpp:245:10: warning: unused variable ‘rb1x’ [-Wunused-variable] double rb1x, rb1y, rb1z, rb2x, rb2y, rb2z, rb3x, rb3y, rb3z; ^~~~ ../improper_inversion_harmonic.cpp:245:16: warning: unused variable ‘rb1y’ [-Wunused-variable] double rb1x, rb1y, rb1z, rb2x, rb2y, rb2z, rb3x, rb3y, rb3z; ^~~~ ../improper_inversion_harmonic.cpp:245:22: warning: unused variable ‘rb1z’ [-Wunused-variable] double rb1x, rb1y, rb1z, rb2x, rb2y, rb2z, rb3x, rb3y, rb3z; ^~~~ ../improper_inversion_harmonic.cpp:245:28: warning: unused variable ‘rb2x’ [-Wunused-variable] double rb1x, rb1y, rb1z, rb2x, rb2y, rb2z, rb3x, rb3y, rb3z; ^~~~ ../improper_inversion_harmonic.cpp:245:34: warning: unused variable ‘rb2y’ [-Wunused-variable] double rb1x, rb1y, rb1z, rb2x, rb2y, rb2z, rb3x, rb3y, rb3z; ^~~~ ../improper_inversion_harmonic.cpp:245:40: warning: unused variable ‘rb2z’ [-Wunused-variable] double rb1x, rb1y, rb1z, rb2x, rb2y, rb2z, rb3x, rb3y, rb3z; ^~~~ ../improper_inversion_harmonic.cpp: In member function ‘virtual void LAMMPS_NS::ImproperInversionHarmonic::read_restart(FILE*)’: ../improper_inversion_harmonic.cpp:320:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kw[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_inversion_harmonic.cpp:321:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&w0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_inversion_harmonic.cpp: In member function ‘void LAMMPS_NS::ImproperInversionHarmonic::invang(const int&, const int&, const int&, const int&, const int&, const int&, const int&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&)’: ../improper_inversion_harmonic.cpp:252:13: warning: ‘rb3x’ may be used uninitialized in this function [-Wmaybe-uninitialized] ev_tally(i1,i2,i3,i4,nlocal,newton_bond,eimproper,f2,f3,f4, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ vb3x,vb3y,vb3z, ~~~~~~~~~~~~~~~ vb2x,vb2y,vb2z, ~~~~~~~~~~~~~~~ rb3x,rb3y,rb3z); ~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nh_asphere.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_tip4p_long_soft.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../verlet_split.cpp ../pair_buck_coul_long_omp.cpp: In member function ‘void LAMMPS_NS::PairBuckCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_buck_coul_long_omp.cpp:171:13: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_buck_coul_long_omp.cpp:172:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_buck_coul_long_omp.cpp:175:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ../pair_buck_coul_long_omp.cpp:175:59: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ../pair_buck_coul_long_omp.cpp: In member function ‘void LAMMPS_NS::PairBuckCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_buck_coul_long_omp.cpp:171:13: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_buck_coul_long_omp.cpp:171:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_buck_coul_long_omp.cpp:175:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ../pair_buck_coul_long_omp.cpp:175:59: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ../pair_tip4p_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairTIP4PLongSoft::read_restart_settings(FILE*)’: ../pair_tip4p_long_soft.cpp:462:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tip4p_long_soft.cpp:463:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tip4p_long_soft.cpp:464:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tip4p_long_soft.cpp:465:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_tip4p_long_soft.cpp:466:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_dsmc.cpp ../pair_tip4p_long_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairTIP4PLongSoft::compute(int, int)’: ../pair_tip4p_long_soft.cpp:365:24: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ~~~~~~~~~~~^~~~~ ../pair_tip4p_long_soft.cpp:364:24: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ~~~~~~~~~~~^~~~~ ../pair_tip4p_long_soft.cpp:292:18: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fH[0]; ^ ../pair_tip4p_long_soft.cpp:288:18: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fH[0]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nph_sphere_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_charmm_coul_charmm.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_append_atoms.cpp ../pair_dsmc.cpp: In member function ‘virtual void LAMMPS_NS::PairDSMC::read_restart(FILE*)’: ../pair_dsmc.cpp:350:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dsmc.cpp:354:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dsmc.cpp:355:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dsmc.cpp: In member function ‘virtual void LAMMPS_NS::PairDSMC::read_restart_settings(FILE*)’: ../pair_dsmc.cpp:383:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dsmc.cpp:384:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&max_cell_size,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dsmc.cpp:385:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dsmc.cpp:386:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_dsmc.cpp:387:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom.cpp ../pair_lj_charmm_coul_charmm.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::read_restart(FILE*)’: ../pair_lj_charmm_coul_charmm.cpp:379:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_charmm.cpp:383:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_charmm.cpp:384:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_charmm.cpp:385:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_charmm.cpp:386:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_charmm.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::read_restart_settings(FILE*)’: ../pair_lj_charmm_coul_charmm.cpp:440:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_charmm.cpp:441:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_charmm.cpp:442:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_charmm.cpp:443:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_charmm.cpp:444:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_charmm.cpp:445:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_charmm.cpp: In member function ‘virtual double LAMMPS_NS::PairLJCharmmCoulCharmm::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_charmm_coul_charmm.cpp:502:37: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]); ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_charmm_coul_charmm.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::compute(int, int)’: ../pair_lj_charmm_coul_charmm.cpp:168:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]); ~~~~~~~~~~~~~~~~~^~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_hbond_dreiding_morse.cpp ../atom.cpp: In member function ‘int LAMMPS_NS::Atom::memcheck(const char*)’: ../atom.cpp:2267:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (strlen(memstr) + n >= memlength) { ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../thr_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_half_multi_2d_newton.cpp ../pair_hbond_dreiding_morse.cpp: In member function ‘virtual void LAMMPS_NS::PairHbondDreidingMorse::coeff(int, char**)’: ../pair_hbond_dreiding_morse.cpp:302:9: warning: ‘donor_flag’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (donor_flag == 0) type2param[i][j][k] = nparams; ^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_wall_harmonic.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_oxdna_stk.cpp ../atom.cpp: In member function ‘void LAMMPS_NS::Atom::data_atoms(int, char*, LAMMPS_NS::tagint, LAMMPS_NS::tagint, int, int, double*)’: ../atom.cpp:925:48: warning: ‘iptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] imagedata = ((imageint) (atoi(values[iptr]) + IMGMAX) & IMGMASK) | ^ ../pair_oxdna_stk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaStk::init_style()’: ../pair_oxdna_stk.cpp:834:7: warning: variable ‘irequest’ set but not used [-Wunused-but-set-variable] int irequest; ^~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_torsion_angles.cpp ../pair_oxdna_stk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaStk::read_restart(FILE*)’: ../pair_oxdna_stk.cpp:996:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1001:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_st[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1002:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_st[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1003:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1004:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1005:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1006:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1007:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1008:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1009:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1010:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1011:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shift_st[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1013:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_st4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1014:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_st4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1015:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1016:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1017:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1019:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_st5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1020:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_st5_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1021:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st5_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1022:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1023:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st5_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1025:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_st6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1026:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_st6_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1027:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st6_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1028:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1029:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st6_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1031:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_st1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1032:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_st1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1033:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1034:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_st1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1035:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_st2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1036:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_st2_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1037:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_st2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1038:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_st2_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaStk::read_restart_settings(FILE*)’: ../pair_oxdna_stk.cpp:1104:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1105:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_stk.cpp:1106:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../math_extra.cpp ../math_extra.cpp: In function ‘void MathExtra::no_squish_rotate(int, double*, double*, double*, double)’: ../math_extra.cpp:260:52: warning: ‘kq[3]’ may be used uninitialized in this function [-Wmaybe-uninitialized] phi = p[0]*kq[0] + p[1]*kq[1] + p[2]*kq[2] + p[3]*kq[3]; ~~~~^~~~~~ ../math_extra.cpp:260:39: warning: ‘kq[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] phi = p[0]*kq[0] + p[1]*kq[1] + p[2]*kq[2] + p[3]*kq[3]; ~~~~^~~~~~ ../math_extra.cpp:260:26: warning: ‘kq[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] phi = p[0]*kq[0] + p[1]*kq[1] + p[2]*kq[2] + p[3]*kq[3]; ~~~~^~~~~~ ../math_extra.cpp:260:13: warning: ‘kq[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] phi = p[0]*kq[0] + p[1]*kq[1] + p[2]*kq[2] + p[3]*kq[3]; ~~~~^~~~~~ ../math_extra.cpp:271:28: warning: ‘kp[3]’ may be used uninitialized in this function [-Wmaybe-uninitialized] p[3] = c_phi*p[3] + s_phi*kp[3]; ~~~~~^~~~~~ ../math_extra.cpp:270:28: warning: ‘kp[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] p[2] = c_phi*p[2] + s_phi*kp[2]; ~~~~~^~~~~~ ../math_extra.cpp:269:28: warning: ‘kp[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] p[1] = c_phi*p[1] + s_phi*kp[1]; ~~~~~^~~~~~ ../math_extra.cpp:268:28: warning: ‘kp[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] p[0] = c_phi*p[0] + s_phi*kp[0]; ~~~~~^~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_fourier_simple_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_gromacs_coul_gromacs_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_half_bin_3d_newtoff.cpp ../pair_lj_gromacs_coul_gromacs_omp.cpp: In member function ‘void LAMMPS_NS::PairLJGromacsCoulGromacsOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_gromacs_coul_gromacs_omp.cpp:182:47: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]); mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../temper_npt.cpp ../pair_lj_gromacs_coul_gromacs_omp.cpp: In member function ‘void LAMMPS_NS::PairLJGromacsCoulGromacsOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_gromacs_coul_gromacs_omp.cpp:182:47: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]); mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_rigid_local.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_wolf_cs.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../min.cpp ../temper_npt.cpp: In member function ‘void LAMMPS_NS::TemperNPT::command(int, char**)’: ../temper_npt.cpp:292:16: warning: ‘boltz_factor’ may be used uninitialized in this function [-Wmaybe-uninitialized] fprintf(universe->uscreen,"SWAP %d & %d: yes = %d,Ts = %d %d, PEs = %g %g, Bz = %g %g, vol = %g %g\n", ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ me_universe,partner,swap,my_set_temp,partner_set_temp, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pe,pe_partner,boltz_factor,exp(boltz_factor), vol, vol_partner); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_controller.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_gauss_cut_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_control.cpp ../reaxc_control.cpp: In function ‘char Read_Control_File(char*, control_params*, output_controls*)’: ../reaxc_control.cpp:118:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( s, MAX_LINE, fp ); ~~~~~^~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nph_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nph_body.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_rdf.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_buck_coul_cut_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_rebo.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_full_multi.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_oxdna_xstk.cpp ../pair_buck_coul_cut_omp.cpp: In member function ‘void LAMMPS_NS::PairBuckCoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_buck_coul_cut_omp.cpp:157:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ../pair_buck_coul_cut_omp.cpp:157:59: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ../pair_buck_coul_cut_omp.cpp: In member function ‘void LAMMPS_NS::PairBuckCoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_buck_coul_cut_omp.cpp:157:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ../pair_buck_coul_cut_omp.cpp:157:59: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ../npair_full_multi.cpp: In member function ‘virtual void LAMMPS_NS::NPairFullMulti::build(LAMMPS_NS::NeighList*)’: ../npair_full_multi.cpp:109:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_full_multi.cpp:110:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_full_multi.cpp:110:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_meso.cpp ../pair_oxdna_xstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaXstk::init_style()’: ../pair_oxdna_xstk.cpp:785:7: warning: variable ‘irequest’ set but not used [-Wunused-but-set-variable] int irequest; ^~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pppm_cg_omp.cpp ../pair_oxdna_xstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaXstk::read_restart(FILE*)’: ../pair_oxdna_xstk.cpp:950:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:955:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k_xst[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:956:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:957:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:958:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:959:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:960:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:961:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:962:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:963:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:965:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:966:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst1_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:967:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:968:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:969:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:971:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:972:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst2_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:973:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst2_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:974:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:975:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst2_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:977:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:978:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst3_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:979:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst3_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:980:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:981:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst3_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:983:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:984:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:985:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:986:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:987:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:989:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst7[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:990:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst7_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:991:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst7_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:992:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst7[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:993:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst7_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:995:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst8[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:996:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst8_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:997:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst8_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:998:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst8[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:999:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst8_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp: In member function ‘virtual void LAMMPS_NS::PairOxdnaXstk::read_restart_settings(FILE*)’: ../pair_oxdna_xstk.cpp:1072:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:1073:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_oxdna_xstk.cpp:1074:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_reaxc_bonds.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_buck_coul_long.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../input.cpp ../pair_buck_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckCoulLong::read_restart(FILE*)’: ../pair_buck_coul_long.cpp:404:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_long.cpp:408:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_long.cpp:409:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_long.cpp:410:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_long.cpp:411:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckCoulLong::read_restart_settings(FILE*)’: ../pair_buck_coul_long.cpp:443:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_long.cpp:444:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_long.cpp:445:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_long.cpp:446:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_long.cpp:447:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_long.cpp:448:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_long.cpp:449:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nbin.cpp ../pair_buck_coul_long.cpp: In member function ‘virtual double LAMMPS_NS::PairBuckCoulLong::single(int, int, int, int, double, double, double, double&)’: ../pair_buck_coul_long.cpp:539:30: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ~~~~~~~~~~~~~~~^~~~~ ../pair_buck_coul_long.cpp:539:53: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ~~~~~~~~~~~~~~~^~~~~~ ../pair_buck_coul_long.cpp:532:28: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ ../pair_buck_coul_long.cpp:532:40: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_buck_coul_long.cpp:535:56: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_buck_coul_long.cpp:530:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*erfc; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_buck_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckCoulLong::compute(int, int)’: ../pair_buck_coul_long.cpp:184:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ~~~~~~~~~~~~~~~^~~~~ ../pair_buck_coul_long.cpp:176:21: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~ ../pair_buck_coul_long.cpp:181:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_buck_coul_long.cpp:184:59: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ~~~~~~~~~~~~~~~^~~~~~ ../pair_buck_coul_long.cpp:178:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_buck_coul_long.cpp:178:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_tdpd_cc_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nph_sphere.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_lineforce.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_wall_region.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_born_coul_long_cs.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../create_box.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_temp_sphere.cpp ../pair_born_coul_long_cs.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulLongCS::compute(int, int)’: ../pair_born_coul_long_cs.cpp:189:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv ~~~~~~~~~~~~~~~^~~~~ ../pair_born_coul_long_cs.cpp:181:21: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~ ../pair_born_coul_long_cs.cpp:186:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_born_coul_long_cs.cpp:190:32: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] + d[itype][jtype]*r6inv*r2inv - offset[itype][jtype]; ~~~~~~~~~~~~~~~^~~~~~ ../pair_born_coul_long_cs.cpp:183:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_born_coul_long_cs.cpp:183:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_half_ghost_bin_2d_newtoff.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_dipole.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_gyration_chunk.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_harmonic_omp.cpp ../angle_dipole.cpp: In member function ‘virtual void LAMMPS_NS::AngleDipole::read_restart(FILE*)’: ../angle_dipole.cpp:209:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_dipole.cpp:210:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_gromacs_coul_gromacs.cpp ../input.cpp: In member function ‘void LAMMPS_NS::Input::partition()’: ../input.cpp:1151:3: warning: ‘yesflag’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (yesflag) { ^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_bond_create.cpp ../pair_lj_gromacs_coul_gromacs.cpp: In member function ‘virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::read_restart(FILE*)’: ../pair_lj_gromacs_coul_gromacs.cpp:383:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_gromacs_coul_gromacs.cpp:387:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_gromacs_coul_gromacs.cpp:388:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_gromacs_coul_gromacs.cpp: In member function ‘virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::read_restart_settings(FILE*)’: ../pair_lj_gromacs_coul_gromacs.cpp:417:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_gromacs_coul_gromacs.cpp:418:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_gromacs_coul_gromacs.cpp:419:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_gromacs_coul_gromacs.cpp:420:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_gromacs_coul_gromacs.cpp:421:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_gromacs_coul_gromacs.cpp:422:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_line.cpp ../pair_lj_gromacs_coul_gromacs.cpp: In member function ‘virtual double LAMMPS_NS::PairLJGromacsCoulGromacs::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_gromacs_coul_gromacs.cpp:504:51: warning: ‘tlj’ may be used uninitialized in this function [-Wmaybe-uninitialized] (ljsw3[itype][jtype] + ljsw4[itype][jtype]*tlj); ~~~~~~~~~~~~~~~~~~~^~~~ ../pair_lj_gromacs_coul_gromacs.cpp:500:39: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] philj = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]); ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_gromacs_coul_gromacs.cpp:493:38: warning: ‘tc’ may be used uninitialized in this function [-Wmaybe-uninitialized] tc*tc*tc * (coulsw3 + coulsw4*tc); ~~~~~~~^~~ ../pair_lj_gromacs_coul_gromacs.cpp: In member function ‘virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::compute(int, int)’: ../pair_lj_gromacs_coul_gromacs.cpp:160:58: warning: ‘tc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoulswitch = tc*tc*tc * (coulsw3 + coulsw4*tc); ~~~~~~~^~~ ../pair_lj_gromacs_coul_gromacs.cpp:170:59: warning: ‘tlj’ may be used uninitialized in this function [-Wmaybe-uninitialized] (ljsw3[itype][jtype] + ljsw4[itype][jtype]*tlj); ~~~~~~~~~~~~~~~~~~~^~~~ ../pair_lj_gromacs_coul_gromacs.cpp:166:47: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]); ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_gromacs_coul_gromacs.cpp:166:46: warning: ‘jtype’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]); ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_nonbonded_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nph.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_gw_zbl.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_buck_coul_cut.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_tune_kspace.cpp ../pair_buck_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckCoulCut::read_restart(FILE*)’: ../pair_buck_coul_cut.cpp:366:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_cut.cpp:370:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_cut.cpp:371:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_cut.cpp:372:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_cut.cpp:373:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_cut.cpp:374:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckCoulCut::read_restart_settings(FILE*)’: ../pair_buck_coul_cut.cpp:405:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_cut.cpp:406:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_cut.cpp:407:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_cut.cpp:408:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_coul_cut.cpp:409:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_phonon.cpp ../pair_buck_coul_cut.cpp: In member function ‘virtual double LAMMPS_NS::PairBuckCoulCut::single(int, int, int, int, double, double, double, double&)’: ../pair_buck_coul_cut.cpp:467:30: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ~~~~~~~~~~~~~~~^~~~~ ../pair_buck_coul_cut.cpp:467:53: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ~~~~~~~~~~~~~~~^~~~~~ ../pair_buck_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckCoulCut::compute(int, int)’: ../pair_buck_coul_cut.cpp:146:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ~~~~~~~~~~~~~~~^~~~~ ../pair_buck_coul_cut.cpp:146:59: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ~~~~~~~~~~~~~~~^~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rigid_nh_small.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../manifold_factory.cpp ../fix_rigid_nh_small.cpp: In member function ‘virtual void LAMMPS_NS::FixRigidNHSmall::final_integrate()’: ../fix_rigid_nh_small.cpp:621:7: warning: unused variable ‘i’ [-Wunused-variable] int i,ibody; ^ ../fix_tune_kspace.cpp: In member function ‘virtual void LAMMPS_NS::FixTuneKspace::init()’: ../fix_tune_kspace.cpp:86:6: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] void FixTuneKspace::init() ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from ../fix_tune_kspace.h:23, from ../fix_tune_kspace.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 2 and 14 bytes into a destination of size 12 __bos (__s), __fmt, __va_arg_pack ()); ^ ../fix_tune_kspace.cpp: In member function ‘void LAMMPS_NS::FixTuneKspace::store_old_kspace_settings()’: ../fix_tune_kspace.cpp:198:6: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] void FixTuneKspace::store_old_kspace_settings() ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from ../fix_tune_kspace.h:23, from ../fix_tune_kspace.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 2 and 14 bytes into a destination of size 12 __bos (__s), __fmt, __va_arg_pack ()); ^ ../fix_tune_kspace.cpp: In member function ‘virtual void LAMMPS_NS::FixTuneKspace::pre_exchange()’: ../fix_tune_kspace.cpp:107:6: warning: ‘/long’ directive writing 5 bytes into a region of size between 1 and 20 [-Wformat-overflow=] void FixTuneKspace::pre_exchange() ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from ../fix_tune_kspace.h:23, from ../fix_tune_kspace.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 6 and 25 bytes into a destination of size 20 __bos (__s), __fmt, __va_arg_pack ()); ^ ../fix_tune_kspace.cpp:107:6: warning: ‘/long’ directive writing 5 bytes into a region of size between 1 and 20 [-Wformat-overflow=] void FixTuneKspace::pre_exchange() ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from ../fix_tune_kspace.h:23, from ../fix_tune_kspace.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 6 and 25 bytes into a destination of size 20 __bos (__s), __fmt, __va_arg_pack ()); ^ ../fix_tune_kspace.cpp:107:6: warning: ‘/msm’ directive writing 4 bytes into a region of size between 1 and 20 [-Wformat-overflow=] void FixTuneKspace::pre_exchange() ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from ../fix_tune_kspace.h:23, from ../fix_tune_kspace.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 5 and 24 bytes into a destination of size 20 __bos (__s), __fmt, __va_arg_pack ()); ^ ../fix_tune_kspace.cpp:107:6: warning: ‘/long’ directive writing 5 bytes into a region of size between 1 and 20 [-Wformat-overflow=] void FixTuneKspace::pre_exchange() ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from ../fix_tune_kspace.h:23, from ../fix_tune_kspace.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 6 and 25 bytes into a destination of size 20 __bos (__s), __fmt, __va_arg_pack ()); ^ ../fix_tune_kspace.cpp:107:6: warning: ‘/msm’ directive writing 4 bytes into a region of size between 1 and 20 [-Wformat-overflow=] void FixTuneKspace::pre_exchange() ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from ../fix_tune_kspace.h:23, from ../fix_tune_kspace.cpp:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 5 and 24 bytes into a destination of size 20 __bos (__s), __fmt, __va_arg_pack ()); ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pppm_cg.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper_cvff_omp.cpp ../fix_phonon.cpp: In member function ‘void LAMMPS_NS::FixPhonon::GaussJordan(int, std::complex*)’: ../fix_phonon.cpp:825:14: warning: ‘irow’ may be used uninitialized in this function [-Wmaybe-uninitialized] indxr[i] = irow; ~~~~~~~~~^~~~~~ ../fix_phonon.cpp:816:5: warning: ‘icol’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (irow != icol){ ^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_size_bin_newton_tri_omp.cpp ../improper_cvff_omp.cpp: In member function ‘void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 1]’: ../improper_cvff_omp.cpp:239:7: warning: ‘pd’ may be used uninitialized in this function [-Wmaybe-uninitialized] pd = -pd; ^~ ../improper_cvff_omp.cpp:238:7: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] p = 2.0 - p; ^ ../improper_cvff_omp.cpp: In member function ‘void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 0]’: ../improper_cvff_omp.cpp:239:7: warning: ‘pd’ may be used uninitialized in this function [-Wmaybe-uninitialized] pd = -pd; ^~ ../improper_cvff_omp.cpp:238:7: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] p = 2.0 - p; ^ ../improper_cvff_omp.cpp: In member function ‘void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_BOND = 1]’: ../improper_cvff_omp.cpp:239:7: warning: ‘pd’ may be used uninitialized in this function [-Wmaybe-uninitialized] pd = -pd; ^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_cosine_shift.cpp ../improper_cvff_omp.cpp: In member function ‘void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_BOND = 0]’: ../improper_cvff_omp.cpp:239:7: warning: ‘pd’ may be used uninitialized in this function [-Wmaybe-uninitialized] pd = -pd; ^~ ../improper_cvff_omp.cpp: In member function ‘void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_BOND = 1]’: ../improper_cvff_omp.cpp:239:7: warning: ‘pd’ may be used uninitialized in this function [-Wmaybe-uninitialized] pd = -pd; ^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_respa_nsq_newtoff.cpp ../improper_cvff_omp.cpp: In member function ‘void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_BOND = 0]’: ../improper_cvff_omp.cpp:239:7: warning: ‘pd’ may be used uninitialized in this function [-Wmaybe-uninitialized] pd = -pd; ^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../manifold_thylakoid.cpp ../angle_cosine_shift.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosineShift::read_restart(FILE*)’: ../angle_cosine_shift.cpp:228:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_cosine_shift.cpp:229:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kcost[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_cosine_shift.cpp:230:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ksint[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_cosine_shift.cpp:231:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../modify.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_dihedral_local.cpp ../manifold_thylakoid.cpp: In member function ‘virtual void LAMMPS_NS::user_manifold::manifold_thylakoid::checkup()’: ../manifold_thylakoid.cpp:63:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( int i = 0; i < parts.size(); ++i ){ ~~^~~~~~~~~~~~~~ ../npair_half_respa_nsq_newtoff.cpp: In member function ‘virtual void LAMMPS_NS::NPairHalfRespaNsqNewtoff::build(LAMMPS_NS::NeighList*)’: ../npair_half_respa_nsq_newtoff.cpp:145:53: warning: ‘neighptr_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ^ ../npair_half_respa_nsq_newtoff.cpp:128:33: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_respa_nsq_newtoff.cpp:129:63: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_nsq_newtoff.cpp:129:46: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_nsq_newtoff.cpp:145:51: warning: ‘n_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ~~~~~~~~^~ In file included from ../neigh_list.h:18:0, from ../npair_half_respa_nsq_newtoff.cpp:16: ../my_page.h:172:12: warning: ‘ipage_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] ndatum += n; ~~~~~~~^~~~ ../npair_half_respa_nsq_newtoff.cpp:76:16: note: ‘ipage_middle’ was declared here MyPage *ipage_middle; ^~~~~~~~~~~~ ../npair_half_respa_nsq_newtoff.cpp:169:28: warning: ‘firstneigh_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] firstneigh_middle[i] = neighptr_middle; ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ../npair_half_respa_nsq_newtoff.cpp:170:26: warning: ‘numneigh_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] numneigh_middle[i] = n_middle; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../npair_half_respa_nsq_newtoff.cpp:168:26: warning: ‘ilist_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] ilist_middle[inum] = i; ~~~~~~~~~~~~~~~~~~~^~~ ../npair_half_respa_nsq_newtoff.cpp:114:37: warning: ‘bitmask’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (includegroup && !(mask[j] & bitmask)) continue; ~~~~~~~~~^~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_spring.cpp ../compute_dihedral_local.cpp: In member function ‘int LAMMPS_NS::ComputeDihedralLocal::compute_dihedrals(int)’: ../compute_dihedral_local.cpp:161:39: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (tag[atom2] != onemols[imol]->dihedral_atom2[atom2][i]) continue; ^ ../compute_dihedral_local.cpp:219:17: warning: ‘pbuf’ may be used uninitialized in this function [-Wmaybe-uninitialized] pbuf[n] = 180.0*atan2(s,c)/MY_PI; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_harmonic_shift_cut_omp.cpp ../modify.cpp: In member function ‘int LAMMPS_NS::Modify::read_restart(FILE*)’: ../modify.cpp:1363:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nfix_restart_global,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../modify.cpp:1380:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../modify.cpp:1383:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(id_restart_global[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../modify.cpp:1386:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../modify.cpp:1389:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(style_restart_global[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../modify.cpp:1392:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../modify.cpp:1395:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(state_restart_global[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../modify.cpp:1405:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nfix_restart_peratom,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../modify.cpp:1422:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../modify.cpp:1425:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(id_restart_peratom[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../modify.cpp:1428:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ ../modify.cpp:1431:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(style_restart_peratom[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../modify.cpp:1434:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_erotate_sphere_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper_cvff.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_reaxc_species.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dump_cfg_uef.cpp ../improper_cvff.cpp: In member function ‘virtual void LAMMPS_NS::ImproperCvff::read_restart(FILE*)’: ../improper_cvff.cpp:339:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_cvff.cpp:340:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sign[1],sizeof(int),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_cvff.cpp:341:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_cvff.cpp: In member function ‘virtual void LAMMPS_NS::ImproperCvff::compute(int, int)’: ../improper_cvff.cpp:209:10: warning: ‘pd’ may be used uninitialized in this function [-Wmaybe-uninitialized] pd = -pd; ~~~^~~~~ ../improper_cvff.cpp:208:9: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] p = 2.0 - p; ~~^~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_mdf.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../rcb.cpp ../rcb.cpp: In member function ‘void LAMMPS_NS::RCB::compute(int, int, double**, double*, double*, double*)’: ../rcb.cpp:557:36: warning: ‘procpartner2’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (readnumber == 2) MPI_Send(NULL,0,MPI_INT,procpartner2,0,world); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../rcb.cpp:485:18: warning: ‘valuehalf_select’ may be used uninitialized in this function [-Wmaybe-uninitialized] else lo[dim] = valuehalf; ~~~~~~~~^~~~~~~~~~~ ../pair_lj_mdf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJMDF::read_restart(FILE*)’: ../pair_lj_mdf.cpp:314:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_mdf.cpp:318:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_mdf.cpp:319:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_mdf.cpp:320:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_mdf.cpp:321:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_mdf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJMDF::read_restart_settings(FILE*)’: ../pair_lj_mdf.cpp:348:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../rcb.cpp: In member function ‘void LAMMPS_NS::RCB::compute_old(int, int, double**, double*, double*, double*)’: ../rcb.cpp:1049:36: warning: ‘procpartner2’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (readnumber == 2) MPI_Send(NULL,0,MPI_INT,procpartner2,0,world); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_helix_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nh.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_pour.cpp ../fix_pour.cpp: In member function ‘virtual void LAMMPS_NS::FixPour::pre_exchange()’: ../fix_pour.cpp:677:7: warning: ‘natom’ may be used uninitialized in this function [-Wmaybe-uninitialized] int ninserted_mols = ninserted_atoms / natom; ^~~~~~~~~~~~~~ ../fix_pour.cpp:693:35: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] atom->nbonds += onemols[imol]->nbonds * ninserted_mols; ^ ../fix_pour.cpp:651:65: warning: ‘denstmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] atom->rmass[n] = 4.0*MY_PI/3.0 * radtmp*radtmp*radtmp * denstmp; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ ../fix_pour.cpp:500:22: warning: ‘radtmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] coords[0][3] = radtmp; ~~~~~~~~~~~~~^~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nvt_sphere.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nve_line.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_full_multi_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_angle.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nve_dotc_langevin.cpp ../npair_full_multi_omp.cpp: In function ‘_ZN9LAMMPS_NS17NPairFullMultiOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_full_multi_omp.cpp:121:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_full_multi_omp.cpp:50:46: note: ‘iatom’ was declared here int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom; ^~~~~ ../npair_full_multi_omp.cpp:120:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_full_multi_omp.cpp:51:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_full_multi_omp.cpp:121:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_full_multi_omp.cpp:50:41: note: ‘imol’ was declared here int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom; ^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_body.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_snad_atom.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../meam_dens_init.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_vector.cpp ../pair_body.cpp: In member function ‘virtual void LAMMPS_NS::PairBody::compute(int, int)’: ../pair_body.cpp:327:27: warning: ‘fpair’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (evflag) ev_tally(i,j,nlocal,newton_pair, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ evdwl,0.0,fpair,delx,dely,delz); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_store_force.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_improper_local.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../lammps.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../ntopo_dihedral_all.cpp ../compute_improper_local.cpp: In member function ‘int LAMMPS_NS::ComputeImproperLocal::compute_impropers(int)’: ../compute_improper_local.cpp:162:39: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (tag[atom2] != onemols[imol]->improper_atom2[atom2][i]) continue; ^ ../compute_improper_local.cpp:218:17: warning: ‘cbuf’ may be used uninitialized in this function [-Wmaybe-uninitialized] cbuf[n] = 180.0*acos(c)/MY_PI; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_long_tip4p_long.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_temp_deform_eff.cpp ../pair_lj_long_tip4p_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongTIP4PLong::read_restart_settings(FILE*)’: ../pair_lj_long_tip4p_long.cpp:1549:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long.cpp:1550:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long.cpp:1551:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long.cpp:1552:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long.cpp:1553:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long.cpp:1555:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long.cpp:1556:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long.cpp:1557:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long.cpp:1558:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long.cpp:1559:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long.cpp:1560:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongTIP4PLong::compute_middle()’: ../pair_lj_long_tip4p_long.cpp:980:18: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2][0] += fH[0]; ^ ../pair_lj_long_tip4p_long.cpp:976:18: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1][0] += fH[0]; ^ ../pair_lj_long_tip4p_long.cpp:949:18: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fH[0]; ^ ../pair_lj_long_tip4p_long.cpp:945:18: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fH[0]; ^ ../pair_lj_long_tip4p_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongTIP4PLong::compute(int, int)’: ../pair_lj_long_tip4p_long.cpp:451:21: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long.cpp:451:21: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_long_tip4p_long.cpp:453:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_long_tip4p_long.cpp:446:24: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ~~~~~~~~~~~^~~~~ ../pair_lj_long_tip4p_long.cpp:445:24: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ~~~~~~~~~~~^~~~~ ../pair_lj_long_tip4p_long.cpp:373:18: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fH[0]; ^ ../pair_lj_long_tip4p_long.cpp:369:18: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fH[0]; ^ ../pair_lj_long_tip4p_long.cpp:453:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_multi_newton_tri_omp.cpp ../pair_lj_long_tip4p_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongTIP4PLong::compute_inner()’: ../pair_lj_long_tip4p_long.cpp:719:18: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2][0] += fH[0]; ^ ../pair_lj_long_tip4p_long.cpp:715:18: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1][0] += fH[0]; ^ ../pair_lj_long_tip4p_long.cpp:688:18: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fH[0]; ^ ../pair_lj_long_tip4p_long.cpp:684:18: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fH[0]; ^ ../pair_lj_long_tip4p_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJLongTIP4PLong::compute_outer(int, int)’: ../pair_lj_long_tip4p_long.cpp:1422:24: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ~~~~~~~~~~~^~~~~ ../pair_lj_long_tip4p_long.cpp:1421:24: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ~~~~~~~~~~~^~~~~ ../pair_lj_long_tip4p_long.cpp:1323:18: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2][0] += fH[0]; ^ ../pair_lj_long_tip4p_long.cpp:1319:18: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1][0] += fH[0]; ^ ../lammps.cpp: In constructor ‘LAMMPS_NS::LAMMPS::LAMMPS(int, char**, MPI_Comm)’: ../lammps.cpp:100:15: warning: ‘wdlast’ may be used uninitialized in this function [-Wmaybe-uninitialized] int wdfirst,wdlast; ^~~~~~ ../lammps.cpp:100:7: warning: ‘wdfirst’ may be used uninitialized in this function [-Wmaybe-uninitialized] int wdfirst,wdlast; ^~~~~~~ ../npair_half_multi_newton_tri_omp.cpp: In function ‘_ZN9LAMMPS_NS26NPairHalfMultiNewtonTriOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_half_multi_newton_tri_omp.cpp:133:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_multi_newton_tri_omp.cpp:51:46: note: ‘iatom’ was declared here int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom; ^~~~~ ../npair_half_multi_newton_tri_omp.cpp:132:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_multi_newton_tri_omp.cpp:52:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_half_multi_newton_tri_omp.cpp:133:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_multi_newton_tri_omp.cpp:51:41: note: ‘imol’ was declared here int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom; ^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_harmonic_shift_cut.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_morse_smooth_linear_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_gayberne_omp.cpp ../bond_harmonic_shift_cut.cpp: In member function ‘virtual void LAMMPS_NS::BondHarmonicShiftCut::read_restart(FILE*)’: ../bond_harmonic_shift_cut.cpp:183:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_harmonic_shift_cut.cpp:184:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_harmonic_shift_cut.cpp:185:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r1[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_comb.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../set.cpp ../set.cpp: In member function ‘void LAMMPS_NS::Set::set(int)’: ../set.cpp:844:15: warning: ‘quat’ may be used uninitialized in this function [-Wmaybe-uninitialized] quat[1] = xvalue * sintheta2; ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_reset_tools.cpp ../set.cpp: In member function ‘void LAMMPS_NS::Set::setrandom(int)’: ../set.cpp:1030:19: warning: ‘quat’ may be used uninitialized in this function [-Wmaybe-uninitialized] quat[1] = 0.0; ~~~~~~~~^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../region_cylinder.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_brownian_poly_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_cosine_omp.cpp ../region_cylinder.cpp: In member function ‘virtual int LAMMPS_NS::RegCylinder::surface_exterior(double*, double)’: ../region_cylinder.cpp:655:16: warning: ‘zp’ may be used uninitialized in this function [-Wmaybe-uninitialized] add_contact(0,x,xp,yp,zp); ~~~~~~~~~~~^~~~~~~~~~~~~~ ../region_cylinder.cpp:655:16: warning: ‘yp’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../region_cylinder.cpp:655:16: warning: ‘xp’ may be used uninitialized in this function [-Wmaybe-uninitialized] mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_full_bin_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_rhok.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_tip4p_long_soft_omp.cpp ../npair_full_bin_omp.cpp: In function ‘_ZN9LAMMPS_NS15NPairFullBinOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_full_bin_omp.cpp:113:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_full_bin_omp.cpp:49:43: note: ‘iatom’ was declared here int i,j,k,n,itype,jtype,ibin,which,imol,iatom; ^~~~~ ../npair_full_bin_omp.cpp:112:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_full_bin_omp.cpp:50:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_full_bin_omp.cpp:113:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_full_bin_omp.cpp:49:38: note: ‘imol’ was declared here int i,j,k,n,itype,jtype,ibin,which,imol,iatom; ^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_dpd_energy.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair.cpp ../pair_lj_cut_tip4p_long_soft_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 1; int = 1]’: ../pair_lj_cut_tip4p_long_soft_omp.cpp:437:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_cut_tip4p_long_soft_omp.cpp:436:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_tip4p_long_soft_omp.cpp:361:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_long_soft_omp.cpp:357:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_inertia_chunk.cpp ../pair_lj_cut_tip4p_long_soft_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 1; int = 0]’: ../pair_lj_cut_tip4p_long_soft_omp.cpp:437:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_cut_tip4p_long_soft_omp.cpp:436:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_tip4p_long_soft_omp.cpp:361:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_long_soft_omp.cpp:357:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair.cpp: In member function ‘virtual void LAMMPS_NS::Pair::modify_params(int, char**)’: ../pair.cpp:154:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (ncoultablebits > sizeof(float)*CHAR_BIT) ^ ../pair.cpp:160:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (ndisptablebits > sizeof(float)*CHAR_BIT) ^ ../pair_lj_cut_tip4p_long_soft_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 0; int = 1]’: ../pair_lj_cut_tip4p_long_soft_omp.cpp:436:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_tip4p_long_soft_omp.cpp:361:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_long_soft_omp.cpp:357:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_cut_tip4p_long_soft_omp.cpp:437:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair.cpp: In member function ‘void LAMMPS_NS::Pair::init_bitmap(double, double, int, int&, int&, int&, int&)’: ../pair.cpp:1688:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (ntablebits > sizeof(float)*CHAR_BIT) ^ ../pair.cpp:1712:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (nexpbits > sizeof(float)*CHAR_BIT - FLT_MANT_DIG) ^ ../pair_lj_cut_tip4p_long_soft_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 0; int = 0]’: ../pair_lj_cut_tip4p_long_soft_omp.cpp:436:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_tip4p_long_soft_omp.cpp:361:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_long_soft_omp.cpp:357:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_cut_tip4p_long_soft_omp.cpp:437:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_cut_tip4p_long_soft_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 0; int = 0; int = 0]’: ../pair_lj_cut_tip4p_long_soft_omp.cpp:420:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_cut_tip4p_long_soft_omp.cpp:416:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; ../pair_lj_cut_tip4p_long_soft_omp.cpp:361:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_long_soft_omp.cpp:357:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nh_asphere_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_born_coul_dsf_cs.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_group.cpp ../pair.cpp: In member function ‘void LAMMPS_NS::Pair::write_file(int, char**)’: ../pair.cpp:1663:9: warning: ‘rsq’ may be used uninitialized in this function [-Wmaybe-uninitialized] e = single(0,1,itype,jtype,rsq,1.0,1.0,f); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair.cpp:1673:24: warning: ‘q_hold’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (atom->q) atom->q = q_hold; ~~~~~~~~^~~~~~~~ ../pair.cpp: In member function ‘virtual void LAMMPS_NS::Pair::init_tables(double, double*)’: ../pair.cpp:383:30: warning: ‘fgamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] ftable[i] = qqrd2e/r * fgamma; ~~~~~~~~~^~~~~~~~ ../pair.cpp:384:30: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] etable[i] = qqrd2e/r * egamma; ~~~~~~~~~^~~~~~~~ ../pair.cpp:387:30: warning: ‘derfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] etable[i] = qqrd2e/r * derfc; ~~~~~~~~~^~~~~~~ ../pair.cpp:386:54: warning: ‘expm2’ may be used uninitialized in this function [-Wmaybe-uninitialized] ftable[i] = qqrd2e/r * (derfc + MY_ISPI4*grij*expm2); ~~~~~~~~~~~~~^~~~~~ ../pair.cpp:386:49: warning: ‘grij’ may be used uninitialized in this function [-Wmaybe-uninitialized] ftable[i] = qqrd2e/r * (derfc + MY_ISPI4*grij*expm2); ~~~~~~~~^~~~~ ../pair_born_coul_dsf_cs.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulDSFCS::compute(int, int)’: ../pair_born_coul_dsf_cs.cpp:148:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv + ~~~~~~~~~~~~~~~^~~~~ ../pair_born_coul_dsf_cs.cpp:144:40: warning: ‘erfcc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift); ~~~~~~^~~~~~~~~~~ ../pair_born_coul_dsf_cs.cpp:145:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_born_coul_dsf_cs.cpp:149:30: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] d[itype][jtype]*r6inv*r2inv - offset[itype][jtype]; ~~~~~~~~~~~~~~~^~~~~~ ../pair_born_coul_dsf_cs.cpp:144:43: warning: ‘r’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift); ~^~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../region_sphere.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_improper.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_drude_transform.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_half_bin_2d_newtoff.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_bin_newton_ssa.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_respa_nsq_newton_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_ufm_opt.cpp ../npair_half_bin_newton_ssa.cpp: In member function ‘virtual void LAMMPS_NS::NPairHalfBinNewtonSSA::build(LAMMPS_NS::NeighList*)’: ../npair_half_bin_newton_ssa.cpp:207:39: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_bin_newton_ssa.cpp:208:69: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_bin_newton_ssa.cpp:208:52: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_nsq_newton_omp.cpp: In function ‘_ZN9LAMMPS_NS26NPairHalfRespaNsqNewtonOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_half_respa_nsq_newton_omp.cpp:163:63: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_nsq_newton_omp.cpp:57:57: note: ‘iatom’ was declared here int i,j,n,itype,jtype,itag,jtag,n_inner,n_middle,imol,iatom; ^~~~~ ../npair_half_respa_nsq_newton_omp.cpp:162:33: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_respa_nsq_newton_omp.cpp:58:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_half_respa_nsq_newton_omp.cpp:163:46: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_nsq_newton_omp.cpp:57:52: note: ‘imol’ was declared here int i,j,n,itype,jtype,itag,jtag,n_inner,n_middle,imol,iatom; ^~~~ ../npair_half_respa_nsq_newton_omp.cpp:180:51: warning: ‘n_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ~~~~~~~~^~ ../npair_half_respa_nsq_newton_omp.cpp:57:43: note: ‘n_middle’ was declared here int i,j,n,itype,jtype,itag,jtag,n_inner,n_middle,imol,iatom; ^~~~~~~~ ../npair_half_respa_nsq_newton_omp.cpp:180:53: warning: ‘neighptr_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ^ ../npair_half_respa_nsq_newton_omp.cpp:60:34: note: ‘neighptr_middle’ was declared here int *neighptr,*neighptr_inner,*neighptr_middle; ^~~~~~~~~~~~~~~ In file included from ../neigh_list.h:18:0, from ../npair_half_respa_nsq_newton_omp.cpp:17: ../my_page.h:224:9: warning: ‘ipage_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] errorflag = 2; ^~~~~~~~~ ../npair_half_respa_nsq_newton_omp.cpp:99:16: note: ‘ipage_middle’ was declared here MyPage *ipage_middle; ^~~~~~~~~~~~ ../npair_half_respa_nsq_newton_omp.cpp:205:26: warning: ‘numneigh_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] numneigh_middle[i] = n_middle; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../npair_half_respa_nsq_newton_omp.cpp:86:22: note: ‘numneigh_middle’ was declared here int *ilist_middle,*numneigh_middle,**firstneigh_middle; ^~~~~~~~~~~~~~~ ../npair_half_respa_nsq_newton_omp.cpp:204:28: warning: ‘firstneigh_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] firstneigh_middle[i] = neighptr_middle; ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ../npair_half_respa_nsq_newton_omp.cpp:86:40: note: ‘firstneigh_middle’ was declared here int *ilist_middle,*numneigh_middle,**firstneigh_middle; ^~~~~~~~~~~~~~~~~ ../npair_half_respa_nsq_newton_omp.cpp:203:23: warning: ‘ilist_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] ilist_middle[i] = i; ~~~~~~~~~~~~~~~~^~~ ../npair_half_respa_nsq_newton_omp.cpp:86:8: note: ‘ilist_middle’ was declared here int *ilist_middle,*numneigh_middle,**firstneigh_middle; ^~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_neb.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_tdpd.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_gayberne.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_electron.cpp ../pair_gayberne.cpp: In member function ‘virtual void LAMMPS_NS::PairGayBerne::read_restart(FILE*)’: ../pair_gayberne.cpp:467:23: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setwell[i],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gayberne.cpp:470:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&well[i][0],sizeof(double),3,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gayberne.cpp:474:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gayberne.cpp:478:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gayberne.cpp:479:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gayberne.cpp:480:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gayberne.cpp: In member function ‘virtual void LAMMPS_NS::PairGayBerne::read_restart_settings(FILE*)’: ../pair_gayberne.cpp:512:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&gamma,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gayberne.cpp:513:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&upsilon,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gayberne.cpp:514:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gayberne.cpp:515:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gayberne.cpp:516:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_gayberne.cpp:517:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../fix_neb.cpp: In member function ‘virtual void LAMMPS_NS::FixNEB::min_post_force(int)’: ../fix_neb.cpp:616:45: warning: ‘lenuntilIm’ may be used uninitialized in this function [-Wmaybe-uninitialized] prefactor = -dot - kspring*(lenuntilIm-idealPos)/(2*meanDist); ~~~~~~~~~~~^~~~~~~~~~ ../fix_neb.cpp:616:45: warning: ‘idealPos’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../fix_neb.cpp:616:58: warning: ‘meanDist’ may be used uninitialized in this function [-Wmaybe-uninitialized] prefactor = -dot - kspring*(lenuntilIm-idealPos)/(2*meanDist); ~~^~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_multi_newton_omp.cpp ../pair_gayberne.cpp: In member function ‘double LAMMPS_NS::PairGayBerne::gayberne_analytic(int, int, double (*)[3], double (*)[3], double (*)[3], double (*)[3], double (*)[3], double (*)[3], double*, double, double*, double*, double*)’: ../pair_gayberne.cpp:730:21: warning: ‘*((void*)& dchi2 +16)’ may be used uninitialized in this function [-Wmaybe-uninitialized] rtor[2] = (temp1*dchi2[2]+temp2*deta2[2]+temp3*dUr2[2]) * -1.0; ~~~~~^~~~~~~~~ ../pair_gayberne.cpp:729:21: warning: ‘*((void*)& dchi2 +8)’ may be used uninitialized in this function [-Wmaybe-uninitialized] rtor[1] = (temp1*dchi2[1]+temp2*deta2[1]+temp3*dUr2[1]) * -1.0; ~~~~~^~~~~~~~~ ../pair_gayberne.cpp:728:21: warning: ‘dchi2’ may be used uninitialized in this function [-Wmaybe-uninitialized] rtor[0] = (temp1*dchi2[0]+temp2*deta2[0]+temp3*dUr2[0]) * -1.0; ~~~~~^~~~~~~~~ ../pair_gayberne.cpp:730:51: warning: ‘*((void*)& dUr2 +16)’ may be used uninitialized in this function [-Wmaybe-uninitialized] rtor[2] = (temp1*dchi2[2]+temp2*deta2[2]+temp3*dUr2[2]) * -1.0; ~~~~~^~~~~~~~ ../pair_gayberne.cpp:729:51: warning: ‘*((void*)& dUr2 +8)’ may be used uninitialized in this function [-Wmaybe-uninitialized] rtor[1] = (temp1*dchi2[1]+temp2*deta2[1]+temp3*dUr2[1]) * -1.0; ~~~~~^~~~~~~~ ../pair_gayberne.cpp:728:51: warning: ‘dUr2’ may be used uninitialized in this function [-Wmaybe-uninitialized] rtor[0] = (temp1*dchi2[0]+temp2*deta2[0]+temp3*dUr2[0]) * -1.0; ~~~~~^~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_full.cpp ../pair_gayberne.cpp: In member function ‘virtual void LAMMPS_NS::PairGayBerne::compute(int, int)’: ../pair_gayberne.cpp:220:26: warning: ‘one_eng’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (eflag) evdwl = factor_lj*one_eng; ~~~~~~^~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_multi_harmonic_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../min_sd.cpp ../npair_half_multi_newton_omp.cpp: In function ‘_ZN9LAMMPS_NS23NPairHalfMultiNewtonOmp5buildEPNS_9NeighListE._omp_fn.0’: ../npair_half_multi_newton_omp.cpp:157:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_multi_newton_omp.cpp:50:46: note: ‘iatom’ was declared here int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom; ^~~~~ ../npair_half_multi_newton_omp.cpp:156:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_multi_newton_omp.cpp:51:10: note: ‘tagprev’ was declared here tagint tagprev; ^~~~~~~ ../npair_half_multi_newton_omp.cpp:157:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_multi_newton_omp.cpp:50:41: note: ‘imol’ was declared here int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom; ^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_tersoff.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../verlet.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../ntopo_angle_all.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_morse_soft.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../imbalance_store.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_sph_rhosum.cpp ../pair_morse_soft.cpp: In member function ‘virtual void LAMMPS_NS::PairMorseSoft::read_restart(FILE*)’: ../pair_morse_soft.cpp:317:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_morse_soft.cpp:321:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_morse_soft.cpp:322:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_morse_soft.cpp:323:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_morse_soft.cpp:324:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_morse_soft.cpp:325:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_cosine_shift_exp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_size_nsq_newtoff.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_temp_rescale_eff.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_charmm_omp.cpp ../angle_cosine_shift_exp.cpp: In member function ‘virtual void LAMMPS_NS::AngleCosineShiftExp::read_restart(FILE*)’: ../angle_cosine_shift_exp.cpp:260:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&umin[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_cosine_shift_exp.cpp:261:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_cosine_shift_exp.cpp:262:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cost[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_cosine_shift_exp.cpp:263:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sint[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_cosine_shift_exp.cpp:264:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../npair_half_size_nsq_newtoff.cpp: In member function ‘virtual void LAMMPS_NS::NPairHalfSizeNsqNewtoff::build(LAMMPS_NS::NeighList*)’: ../npair_half_size_nsq_newtoff.cpp:79:37: warning: ‘bitmask’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (includegroup && !(mask[j] & bitmask)) continue; ~~~~~~~~~^~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nbin_ssa.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_buck_long_coul_long_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_born_coul_long.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_qeq_reax.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper_cossq.cpp ../pair_born_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulLong::read_restart(FILE*)’: ../pair_born_coul_long.cpp:427:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_long.cpp:431:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_long.cpp:432:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_long.cpp:433:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_long.cpp:434:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_long.cpp:435:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_long.cpp:436:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulLong::read_restart_settings(FILE*)’: ../pair_born_coul_long.cpp:470:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_long.cpp:471:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_long.cpp:472:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_long.cpp:473:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_long.cpp:474:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_long.cpp:475:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_long.cpp:476:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_born_coul_long.cpp: In member function ‘virtual double LAMMPS_NS::PairBornCoulLong::single(int, int, int, int, double, double, double, double&)’: ../pair_born_coul_long.cpp:568:30: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv + ~~~~~~~~~~~~~~~^~~~~ ../pair_born_coul_long.cpp:568:53: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv + ~~~~~~~~~~~~~~~^~~~~~ ../pair_born_coul_long.cpp:561:28: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ ../pair_born_coul_long.cpp:561:40: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_born_coul_long.cpp:564:56: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_born_coul_long.cpp:559:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*erfc; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_born_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulLong::compute(int, int)’: ../pair_born_coul_long.cpp:191:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv ~~~~~~~~~~~~~~~^~~~~ ../pair_born_coul_long.cpp:183:21: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~ ../pair_born_coul_long.cpp:188:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_born_coul_long.cpp:192:32: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] + d[itype][jtype]*r6inv*r2inv - offset[itype][jtype]; ~~~~~~~~~~~~~~~^~~~~~ ../pair_born_coul_long.cpp:185:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_born_coul_long.cpp:185:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ ../improper_cossq.cpp: In member function ‘virtual void LAMMPS_NS::ImproperCossq::read_restart(FILE*)’: ../improper_cossq.cpp:307:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_cossq.cpp:308:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../fix_qeq_reax.cpp: In member function ‘virtual void LAMMPS_NS::FixQEqReax::pertype_parameters(char*)’: ../fix_qeq_reax.cpp:221:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(pf,"%d %lg %lg %lg",&itype,&v1,&v2,&v3); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_class2_p6.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_npt_sphere_omp.cpp ../angle_class2_p6.cpp: In member function ‘virtual void LAMMPS_NS::AngleClass2P6::write_data(FILE*)’: ../angle_class2_p6.cpp:433:66: warning: too many arguments for format [-Wformat-extra-args] i,theta0[i]/MY_PI*180.0,k2[i],k3[i],k4[i],k5[i],k6[i]); ^ ../angle_class2_p6.cpp: In member function ‘virtual void LAMMPS_NS::AngleClass2P6::read_restart(FILE*)’: ../angle_class2_p6.cpp:389:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2_p6.cpp:390:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2_p6.cpp:391:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2_p6.cpp:392:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2_p6.cpp:393:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k5[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2_p6.cpp:394:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k6[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2_p6.cpp:396:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb_k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2_p6.cpp:397:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb_r1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2_p6.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bb_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2_p6.cpp:400:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_k1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2_p6.cpp:401:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2_p6.cpp:402:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_class2_p6.cpp:403:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../fix_qeq_reax.cpp: In member function ‘virtual void LAMMPS_NS::FixQEqReax::pre_force(int)’: ../fix_qeq_reax.cpp:515:22: warning: ‘t_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] qeq_time = t_end - t_start; ~~~~~~^~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_oxdna_fene.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../manifold_cylinder_dent.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pppm_disp_tip4p.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_property_atom.cpp ../bond_oxdna_fene.cpp: In member function ‘virtual void LAMMPS_NS::BondOxdnaFene::read_restart(FILE*)’: ../bond_oxdna_fene.cpp:296:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_oxdna_fene.cpp:297:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&Delta[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_oxdna_fene.cpp:298:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_coul_dsf.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_dpd.cpp ../pair_lj_cut_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulDSF::read_restart(FILE*)’: ../pair_lj_cut_coul_dsf.cpp:380:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_dsf.cpp:384:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_dsf.cpp:385:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_dsf.cpp:386:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulDSF::read_restart_settings(FILE*)’: ../pair_lj_cut_coul_dsf.cpp:416:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_dsf.cpp:417:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_dsf.cpp:418:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_dsf.cpp:419:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_dsf.cpp:420:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_dsf.cpp:421:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_dsf.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulDSF::compute(int, int)’: ../pair_lj_cut_coul_dsf.cpp:168:40: warning: ‘erfcc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift); ~~~~~~^~~~~~~~~~~ ../pair_lj_cut_coul_dsf.cpp:168:19: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_dsf.cpp:162:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_dsf.cpp:168:43: warning: ‘r’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift); ~^~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_wall_region_ees.cpp ../pair_lj_cut_coul_dsf.cpp: In member function ‘virtual double LAMMPS_NS::PairLJCutCoulDSF::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_cut_coul_dsf.cpp:465:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_dsf.cpp:465:34: warning: ‘erfcc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift); ~~~~~~^~~~~~~~~~~ ../pair_lj_cut_coul_dsf.cpp:465:37: warning: ‘r’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift); ~^~~~~~~~ ../pair_lj_cut_coul_dsf.cpp:459:18: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_torsion_angles_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cubic.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_wall_colloid.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dump.cpp ../pair_lj_cubic.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCubic::read_restart(FILE*)’: ../pair_lj_cubic.cpp:283:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cubic.cpp:287:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cubic.cpp:288:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cubic.cpp:289:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cubic.cpp:290:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cubic.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCubic::read_restart_settings(FILE*)’: ../pair_lj_cubic.cpp:317:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cubic.cpp: In member function ‘virtual double LAMMPS_NS::PairLJCubic::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_cubic.cpp:349:32: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] (PHIS + DPHIDS*t - A3*t*t*t/6.0); ~~~~~~^~ ../pair_lj_cubic.cpp:346:39: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] philj = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]); ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_cubic.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCubic::compute(int, int)’: ../pair_lj_cubic.cpp:134:40: warning: ‘t’ may be used uninitialized in this function [-Wmaybe-uninitialized] (PHIS + DPHIDS*t - A3*t*t*t/6.0); ~~~~~~^~ ../pair_lj_cubic.cpp:131:19: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_class2_coul_cut.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_meam_spline.cpp ../pair_lj_class2_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2CoulCut::read_restart(FILE*)’: ../pair_lj_class2_coul_cut.cpp:364:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_cut.cpp:368:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_cut.cpp:369:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_cut.cpp:370:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_cut.cpp:371:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2CoulCut::read_restart_settings(FILE*)’: ../pair_lj_class2_coul_cut.cpp:401:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_cut.cpp:402:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_cut.cpp:403:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_cut.cpp:404:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_cut.cpp:405:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dump.cpp: In member function ‘virtual void LAMMPS_NS::Dump::write()’: ../dump.cpp:498:13: warning: ‘vhold’ may be used uninitialized in this function [-Wmaybe-uninitialized] atom->v = vhold; ~~~~~~~~^~~~~~~ ../dump.cpp:497:13: warning: ‘xhold’ may be used uninitialized in this function [-Wmaybe-uninitialized] atom->x = xhold; ~~~~~~~~^~~~~~~ ../dump.cpp:499:17: warning: ‘imagehold’ may be used uninitialized in this function [-Wmaybe-uninitialized] atom->image = imagehold; ~~~~~~~~~~~~^~~~~~~~~~~ ../pair_meam_spline.cpp: In member function ‘void LAMMPS_NS::PairMEAMSpline::read_file(const char*)’: ../pair_meam_spline.cpp:449:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_meam_spline.cpp:455:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_meam_spline.cpp:485:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_meam_spline.cpp: In member function ‘void LAMMPS_NS::PairMEAMSpline::SplineFunction::parse(FILE*, LAMMPS_NS::Error*, bool)’: ../pair_meam_spline.cpp:649:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_meam_spline.cpp:652:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_meam_spline.cpp:658:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_meam_spline.cpp:665:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_meam_spline.cpp:669:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_cut.cpp: In member function ‘virtual double LAMMPS_NS::PairLJClass2CoulCut::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_class2_coul_cut.cpp:462:18: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] philj = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_cut.cpp:462:37: warning: ‘r3inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] philj = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) - ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_class2_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairLJClass2CoulCut::compute(int, int)’: ../pair_lj_class2_coul_cut.cpp:144:26: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_class2_coul_cut.cpp:144:45: warning: ‘r3inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) - ~~~~~~~~~~~~~~~~~^~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_respa_bin_newton_tri.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_template.cpp ../npair_half_respa_bin_newton_tri.cpp: In member function ‘virtual void LAMMPS_NS::NPairHalfRespaBinNewtonTri::build(LAMMPS_NS::NeighList*)’: ../npair_half_respa_bin_newton_tri.cpp:157:55: warning: ‘neighptr_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ^ ../npair_half_respa_bin_newton_tri.cpp:138:35: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_respa_bin_newton_tri.cpp:139:65: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_bin_newton_tri.cpp:139:48: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_respa_bin_newton_tri.cpp:157:53: warning: ‘n_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (which == 0) neighptr_middle[n_middle++] = j; ~~~~~~~~^~ In file included from ../neigh_list.h:18:0, from ../npair_half_respa_bin_newton_tri.cpp:16: ../my_page.h:172:12: warning: ‘ipage_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] ndatum += n; ~~~~~~~^~~~ ../npair_half_respa_bin_newton_tri.cpp:72:16: note: ‘ipage_middle’ was declared here MyPage *ipage_middle; ^~~~~~~~~~~~ ../npair_half_respa_bin_newton_tri.cpp:182:28: warning: ‘firstneigh_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] firstneigh_middle[i] = neighptr_middle; ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ ../npair_half_respa_bin_newton_tri.cpp:183:26: warning: ‘numneigh_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] numneigh_middle[i] = n_middle; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../npair_half_respa_bin_newton_tri.cpp:181:26: warning: ‘ilist_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized] ilist_middle[inum] = i; ~~~~~~~~~~~~~~~~~~~^~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_npt_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_half_multi_3d_newtoff.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../meam_impl.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_airebo_morse_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_peri_lps_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_charmm.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_smtbq.cpp ../angle_charmm.cpp: In member function ‘virtual void LAMMPS_NS::AngleCharmm::read_restart(FILE*)’: ../angle_charmm.cpp:249:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_charmm.cpp:250:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_charmm.cpp:251:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k_ub[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../angle_charmm.cpp:252:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&r_ub[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_long_omp.cpp ../pair_smtbq.cpp: In member function ‘virtual void LAMMPS_NS::PairSMTBQ::read_file(char*)’: ../pair_smtbq.cpp:420:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:423:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:476:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); if (verbose) printf ("%s",ptr); ~~~~~^~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:480:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:488:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:497:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:515:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:529:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:552:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); if (verbose) printf ("%s",ptr); ~~~~~^~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:555:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:608:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:620:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:642:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:655:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:662:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:682:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:685:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:695:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:706:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:709:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:714:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:722:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:725:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:732:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:735:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:745:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:748:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:753:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:779:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:782:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:790:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp:800:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_coul_long_omp.cpp: In member function ‘void LAMMPS_NS::PairCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_coul_long_omp.cpp:176:13: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_coul_long_omp.cpp:176:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_coul_long_omp.cpp:178:46: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_coul_long_omp.cpp:178:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_coul_long_omp.cpp: In member function ‘void LAMMPS_NS::PairCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_coul_long_omp.cpp:176:13: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_coul_long_omp.cpp:176:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_coul_long_omp.cpp:178:46: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_coul_long_omp.cpp:178:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper_fourier_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_orient_fcc.cpp ../pair_smtbq.cpp: In member function ‘void LAMMPS_NS::PairSMTBQ::Charge()’: ../pair_smtbq.cpp:2588:61: warning: ‘gp’ may be used uninitialized in this function [-Wmaybe-uninitialized] QOxInit=max(QOxInit, -0.98* params[1].qform *nQEqcall[gp]/nQEqaall[gp]) ; ^ ../pair_smtbq.cpp:2806:8: warning: ‘t_init’ may be used uninitialized in this function [-Wmaybe-uninitialized] dt = t_end - t_init; ~~~^~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../mgpt_linalg.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_buck_long_coul_long.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_shake.cpp ../pair_buck_long_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckLongCoulLong::read_restart(FILE*)’: ../pair_buck_long_coul_long.cpp:360:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_long_coul_long.cpp:364:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck_a_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_long_coul_long.cpp:365:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck_rho_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_long_coul_long.cpp:366:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&buck_c_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_long_coul_long.cpp:367:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_buck_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_long_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckLongCoulLong::read_restart_settings(FILE*)’: ../pair_buck_long_coul_long.cpp:399:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_buck_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_long_coul_long.cpp:400:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_long_coul_long.cpp:401:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_long_coul_long.cpp:402:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_long_coul_long.cpp:403:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_long_coul_long.cpp:404:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_buck_long_coul_long.cpp:405:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ewald_order,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_smtbq.cpp: In member function ‘void LAMMPS_NS::PairSMTBQ::tabqeq()’: ../pair_smtbq.cpp:1450:61: warning: ‘bCoeff’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (r > rc) {dij = aCoeff *square(r- rc-nang) *exp(bCoeff*r); ~~~^~~~~~~~~~ ../pair_smtbq.cpp:1450:37: warning: ‘aCoeff’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (r > rc) {dij = aCoeff *square(r- rc-nang) *exp(bCoeff*r); ~~~~~~~^~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_table.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_addforce.cpp ../bond_table.cpp: In member function ‘virtual void LAMMPS_NS::BondTable::read_restart(FILE*)’: ../bond_table.cpp:236:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_table.cpp:237:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../bond_table.cpp: In member function ‘void LAMMPS_NS::BondTable::read_table(LAMMPS_NS::BondTable::Table*, char*, char*)’: ../bond_table.cpp:314:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ ../bond_table.cpp:316:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../bond_table.cpp:317:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../bond_table.cpp:323:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../bond_table.cpp:335:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_hybrid.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_hbond_dreiding_lj.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_npt_sphere.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nve_noforce.cpp ../pair_hbond_dreiding_lj.cpp: In member function ‘virtual void LAMMPS_NS::PairHbondDreidingLJ::coeff(int, char**)’: ../pair_hbond_dreiding_lj.cpp:375:9: warning: ‘donor_flag’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (donor_flag == 0) type2param[i][j][k] = nparams; ^~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_balance.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_event_tad.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_charmm_coul_charmm_implicit_omp.cpp ../fix_balance.cpp: In member function ‘void LAMMPS_NS::FixBalance::rebalance()’: ../fix_balance.cpp:291:53: warning: ‘sendproc’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (lbstyle == BISECTION) irregular->migrate_atoms(0,1,sendproc); ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../angle_cosine_periodic_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral_table.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_bond.cpp ../dihedral_table.cpp: In member function ‘virtual void LAMMPS_NS::DihedralTable::read_restart(FILE*)’: ../dihedral_table.cpp:1026:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_table.cpp:1027:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../dihedral_table.cpp: In member function ‘void LAMMPS_NS::DihedralTable::read_table(LAMMPS_NS::DihedralTable::Table*, char*, char*)’: ../dihedral_table.cpp:1094:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ ../dihedral_table.cpp:1096:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../dihedral_table.cpp:1098:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ ../dihedral_table.cpp:1104:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_charmmfsw_coul_long.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_eam_fs_omp.cpp ../pair_lj_charmmfsw_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::read_restart(FILE*)’: ../pair_lj_charmmfsw_coul_long.cpp:900:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:904:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:905:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:906:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:907:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::read_restart_settings(FILE*)’: ../pair_lj_charmmfsw_coul_long.cpp:939:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:940:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:941:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:942:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:943:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:944:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:945:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp: In member function ‘virtual double LAMMPS_NS::PairLJCharmmfswCoulLong::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_charmmfsw_coul_long.cpp:1046:16: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] (r6inv - cut_lj6inv)*(r6inv - cut_lj6inv); ~~~~~~~^~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:1048:16: warning: ‘r3inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] (r3inv - cut_lj3inv)*(r3inv - cut_lj3inv);; ~~~~~~~^~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:1036:28: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ ../pair_lj_charmmfsw_coul_long.cpp:1036:40: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:1039:56: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:1034:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*erfc; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::compute_outer(int, int)’: ../pair_lj_charmmfsw_coul_long.cpp:611:45: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcecoul = prefactor * (erfc + EWALD_F*grij*expm2); ~~~~~~^~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:574:64: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:611:59: warning: ‘expm2’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcecoul = prefactor * (erfc + EWALD_F*grij*expm2); ^ ../pair_lj_charmmfsw_coul_long.cpp:611:54: warning: ‘grij’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcecoul = prefactor * (erfc + EWALD_F*grij*expm2); ^ ../pair_lj_charmmfsw_coul_long.cpp:633:21: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcelj = r6inv * (lj1[itype][jtype]*r6inv - lj2[itype][jtype]); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:590:20: warning: ‘r’ may be used uninitialized in this function [-Wmaybe-uninitialized] rinv = 1.0/r; ~~~~~^~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:617:50: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = ptable[itable] + fraction*dptable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:614:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = vtable[itable] + fraction*dvtable[itable]; ^ ../pair_lj_charmmfsw_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::compute(int, int)’: ../pair_lj_charmmfsw_coul_long.cpp:219:21: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:224:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:240:42: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl6 = -lj4[itype][jtype]*r6inv + ~~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:221:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_charmmfsw_coul_long.cpp:221:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ ../pair_lj_charmmfsw_coul_long.cpp:115:33: warning: ‘jtype’ may be used uninitialized in this function [-Wmaybe-uninitialized] int i,j,ii,jj,inum,jnum,itype,jtype,itable; ^~~~~ ../pair_eam_fs_omp.cpp: In member function ‘virtual void LAMMPS_NS::PairEAMFSOMP::read_file(char*)’: ../pair_eam_fs_omp.cpp:139:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_fs_omp.cpp:140:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_fs_omp.cpp:141:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_fs_omp.cpp:142:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_fs_omp.cpp:167:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_fs_omp.cpp:189:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_torque_chunk.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reader_native.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_force_tally.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_debye.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_tip4p_cut_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_colloid_omp.cpp ../pair_coul_debye.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulDebye::read_restart_settings(FILE*)’: ../pair_coul_debye.cpp:153:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_debye.cpp:154:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_debye.cpp:155:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_debye.cpp:156:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_freeze.cpp ../pair_lj_cut_tip4p_cut_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 1; int = 1]’: ../pair_lj_cut_tip4p_cut_omp.cpp:422:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_cut_tip4p_cut_omp.cpp:421:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_tip4p_cut_omp.cpp:346:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_cut_omp.cpp:342:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_colloid_omp.cpp: In member function ‘void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_colloid_omp.cpp:213:31: warning: ‘fpair’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_thr(this, i,j,nlocal,NEWTON_PAIR, ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evdwl,0.0,fpair,delx,dely,delz,thr); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_colloid_omp.cpp: In member function ‘void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_colloid_omp.cpp:206:20: warning: ‘fpair’ may be used uninitialized in this function [-Wmaybe-uninitialized] fztmp += delz*fpair; ~~~~^~~~~~ ../pair_lj_cut_tip4p_cut_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 1; int = 0]’: ../pair_lj_cut_tip4p_cut_omp.cpp:422:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_cut_tip4p_cut_omp.cpp:421:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_tip4p_cut_omp.cpp:346:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_cut_omp.cpp:342:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_colloid_omp.cpp: In member function ‘void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1]’: ../pair_colloid_omp.cpp:213:31: warning: ‘fpair’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (EVFLAG) ev_tally_thr(this, i,j,nlocal,NEWTON_PAIR, ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evdwl,0.0,fpair,delx,dely,delz,thr); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../nstencil_half_bin_3d_newton_tri.cpp ../pair_lj_cut_tip4p_cut_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 0; int = 1]’: ../pair_lj_cut_tip4p_cut_omp.cpp:422:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_cut_tip4p_cut_omp.cpp:421:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_tip4p_cut_omp.cpp:346:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_cut_omp.cpp:342:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_colloid_omp.cpp: In member function ‘void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0]’: ../pair_colloid_omp.cpp:206:20: warning: ‘fpair’ may be used uninitialized in this function [-Wmaybe-uninitialized] fztmp += delz*fpair; ~~~~^~~~~~ ../pair_colloid_omp.cpp: In member function ‘void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1]’: ../pair_colloid_omp.cpp:206:20: warning: ‘fpair’ may be used uninitialized in this function [-Wmaybe-uninitialized] fztmp += delz*fpair; ~~~~^~~~~~ ../pair_lj_cut_tip4p_cut_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 1; int = 0; int = 0]’: ../pair_lj_cut_tip4p_cut_omp.cpp:422:15: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH2; ^~~~~ ../pair_lj_cut_tip4p_cut_omp.cpp:421:15: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] vlist[n++] = jH1; ^~~~~ ../pair_lj_cut_tip4p_cut_omp.cpp:346:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_cut_omp.cpp:342:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_colloid_omp.cpp: In member function ‘void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0]’: ../pair_colloid_omp.cpp:206:20: warning: ‘fpair’ may be used uninitialized in this function [-Wmaybe-uninitialized] fztmp += delz*fpair; ~~~~^~~~~~ ../pair_lj_cut_tip4p_cut_omp.cpp: In member function ‘void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int = 0; int = 0; int = 0]’: ../pair_lj_cut_tip4p_cut_omp.cpp:342:22: warning: ‘iH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH1].x += fHx; ../pair_lj_cut_tip4p_cut_omp.cpp:346:22: warning: ‘iH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[iH2].x += fHx; ../pair_lj_cut_tip4p_cut_omp.cpp:405:22: warning: ‘jH2’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH2].x += fHx; ../pair_lj_cut_tip4p_cut_omp.cpp:401:22: warning: ‘jH1’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[jH1].x += fHx; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_npt.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../body_nparticle.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_airebo_morse.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_peri_lps.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_kolmogorov_crespi_full.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_long.cpp ../pair_peri_lps.cpp: In member function ‘virtual void LAMMPS_NS::PairPeriLPS::read_restart(FILE*)’: ../pair_peri_lps.cpp:495:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_lps.cpp:499:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&bulkmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_lps.cpp:500:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&shearmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_lps.cpp:501:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&s00[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_lps.cpp:502:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_peri_lps.cpp:503:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulLong::read_restart(FILE*)’: ../pair_coul_long.cpp:297:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_long.cpp:300:27: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&scale[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulLong::read_restart_settings(FILE*)’: ../pair_coul_long.cpp:326:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_long.cpp:327:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_long.cpp:328:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_long.cpp:329:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_long.cpp:330:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_long.cpp: In member function ‘virtual double LAMMPS_NS::PairCoulLong::single(int, int, int, int, double, double, double, double&)’: ../pair_coul_long.cpp:377:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*erfc; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_coul_long.cpp:379:26: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ ../pair_coul_long.cpp:379:38: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_coul_long.cpp:377:13: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*erfc; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulLong::compute(int, int)’: ../pair_coul_long.cpp:161:19: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~ ../pair_coul_long.cpp:161:19: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_coul_long.cpp:163:46: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_coul_long.cpp:163:34: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../improper_fourier.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_yukawa_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_property_atom.cpp ../improper_fourier.cpp: In member function ‘virtual void LAMMPS_NS::ImproperFourier::read_restart(FILE*)’: ../improper_fourier.cpp:332:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_fourier.cpp:333:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_fourier.cpp:334:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C1[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_fourier.cpp:335:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&C2[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../improper_fourier.cpp:336:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&all[1],sizeof(int),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_qeq.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_system_props.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_brownian_omp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_deform.cpp ../fix_qeq.cpp: In member function ‘virtual int LAMMPS_NS::FixQEq::pack_forward_comm(int, int*, double*, int, int*)’: ../fix_qeq.cpp:487:10: warning: ‘m’ may be used uninitialized in this function [-Wmaybe-uninitialized] return m; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_comb3.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_xrd.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_cut_coul_debye.cpp ../pair_comb3.cpp: In member function ‘void LAMMPS_NS::PairComb3::read_lib()’: ../pair_comb3.cpp:330:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ ../pair_comb3.cpp:331:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ ../pair_comb3.cpp:342:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ ../pair_comb3.cpp:354:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ ../pair_comb3.cpp:362:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ ../pair_comb3.cpp:370:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ ../pair_comb3.cpp:379:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ ../pair_comb3.cpp:388:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ ../pair_comb3.cpp:395:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ ../pair_comb3.cpp:408:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ ../pair_comb3.cpp:426:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ ../pair_comb3.cpp:435:19: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ ../pair_comb3.cpp:450:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ ../pair_comb3.cpp:468:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ ../pair_comb3.cpp:477:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ ../pair_comb3.cpp:492:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ ../pair_comb3.cpp:510:18: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ ../pair_comb3.cpp:519:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ ../fix_deform.cpp: In constructor ‘LAMMPS_NS::FixDeform::FixDeform(LAMMPS_NS::LAMMPS*, int, char**)’: ../fix_deform.cpp:188:18: warning: ‘index’ may be used uninitialized in this function [-Wmaybe-uninitialized] set[index].style = VARIABLE; ^ ../pair_lj_cut_coul_debye.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulDebye::read_restart_settings(FILE*)’: ../pair_lj_cut_coul_debye.cpp:174:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_debye.cpp:175:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_debye.cpp:176:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_debye.cpp:177:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_debye.cpp:178:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dihedral.cpp ../pair_lj_cut_coul_debye.cpp: In member function ‘virtual double LAMMPS_NS::PairLJCutCoulDebye::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_cut_coul_debye.cpp:216:37: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_cut_coul_debye.cpp:212:13: warning: ‘screening’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = force->qqrd2e * atom->q[i]*atom->q[j] * rinv * screening; ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_debye.cpp:212:53: warning: ‘rinv’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = force->qqrd2e * atom->q[i]*atom->q[j] * rinv * screening; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_cut_coul_debye.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCutCoulDebye::compute(int, int)’: ../pair_lj_cut_coul_debye.cpp:110:19: warning: ‘screening’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening; ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_cut_coul_debye.cpp:110:54: warning: ‘rinv’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_cut_coul_debye.cpp:113:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) - ~~~~~~~~~~~~~~~~~^~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_peri_neigh.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_tdpd_source.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_pimd.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dump_dcd.cpp ../pair_comb3.cpp: In member function ‘void LAMMPS_NS::PairComb3::comb_zetaterm_d(double, double, double, double, double, double*, double, double*, double, double*, double*, double*, LAMMPS_NS::PairComb3::Param*, LAMMPS_NS::PairComb3::Param*, LAMMPS_NS::PairComb3::Param*, double)’: ../pair_comb3.cpp:2314:18: warning: ‘com6’ may be used uninitialized in this function [-Wmaybe-uninitialized] {com6+=prefac_ij2*pcrossk*dfc_k;} ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_charmm_coul_long.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_bin_atomonly_newton_omp.cpp ../pair_comb3.cpp: In member function ‘void LAMMPS_NS::PairComb3::force_zeta(LAMMPS_NS::PairComb3::Param*, LAMMPS_NS::PairComb3::Param*, double, double, double, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, int, double&, double, double, int, int, int, double, double, double)’: ../pair_comb3.cpp:1799:13: warning: ‘prady’ may be used uninitialized in this function [-Wmaybe-uninitialized] prady += 1.0 * btor[2] * bbtor * att_eng; ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_comb3.cpp:1798:13: warning: ‘pradx’ may be used uninitialized in this function [-Wmaybe-uninitialized] pradx += 1.0 * btor[1] * bbtor * att_eng; ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulLong::read_restart(FILE*)’: ../pair_lj_charmm_coul_long.cpp:830:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp:834:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp:835:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp:836:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp:837:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulLong::read_restart_settings(FILE*)’: ../pair_lj_charmm_coul_long.cpp:869:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp:870:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp:871:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp:872:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp:873:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp:874:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp:875:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_valence_angles_omp.cpp ../pair_lj_charmm_coul_long.cpp: In member function ‘virtual double LAMMPS_NS::PairLJCharmmCoulLong::single(int, int, int, int, double, double, double, double&)’: ../pair_lj_charmm_coul_long.cpp:974:37: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]); ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_charmm_coul_long.cpp:966:28: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ ../pair_lj_charmm_coul_long.cpp:966:40: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp:969:56: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp:964:15: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*erfc; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_comb3.cpp: In member function ‘void LAMMPS_NS::PairComb3::direct(LAMMPS_NS::PairComb3::Param*, LAMMPS_NS::PairComb3::Param*, int, int, int, double, double, double, double, double, double, double, double, double&, double&, int, int)’: ../pair_comb3.cpp:2740:34: warning: ‘dcurlji’ may be used uninitialized in this function [-Wmaybe-uninitialized] double curlij1,curlji1,dcurlij,dcurlji; ^~~~~~~ ../pair_comb3.cpp:2740:26: warning: ‘dcurlij’ may be used uninitialized in this function [-Wmaybe-uninitialized] double curlij1,curlji1,dcurlij,dcurlji; ^~~~~~~ ../pair_lj_charmm_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulLong::compute_outer(int, int)’: ../pair_lj_charmm_coul_long.cpp:549:45: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcecoul = prefactor * (erfc + EWALD_F*grij*expm2); ~~~~~~^~~~~~~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp:522:64: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp:549:59: warning: ‘expm2’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcecoul = prefactor * (erfc + EWALD_F*grij*expm2); ^ ../pair_lj_charmm_coul_long.cpp:549:54: warning: ‘grij’ may be used uninitialized in this function [-Wmaybe-uninitialized] forcecoul = prefactor * (erfc + EWALD_F*grij*expm2); ^ ../pair_lj_charmm_coul_long.cpp:555:50: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = ptable[itable] + fraction*dptable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp:552:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = vtable[itable] + fraction*dvtable[itable]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_adp_omp.cpp ../pair_lj_charmm_coul_long.cpp: In member function ‘virtual void LAMMPS_NS::PairLJCharmmCoulLong::compute(int, int)’: ../pair_lj_charmm_coul_long.cpp:197:21: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp:202:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp:206:45: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]); ~~~~~~~~~~~~~~~~~^~~~~~ ../pair_lj_charmm_coul_long.cpp:199:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_lj_charmm_coul_long.cpp:199:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ ../pair_lj_charmm_coul_long.cpp:206:44: warning: ‘jtype’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]); ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_nve_dot.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_eam_fs.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_lj_charmm_coul_long_opt.cpp ../pair_eam_fs.cpp: In member function ‘virtual void LAMMPS_NS::PairEAMFS::read_file(char*)’: ../pair_eam_fs.cpp:140:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_fs.cpp:141:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_fs.cpp:142:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_fs.cpp:143:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_fs.cpp:168:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ ../pair_eam_fs.cpp:194:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_temp_rescale.cpp ../pair_lj_charmm_coul_long_opt.cpp: In member function ‘void LAMMPS_NS::PairLJCharmmCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]’: ../pair_lj_charmm_coul_long_opt.cpp:207:17: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_charmm_coul_long_opt.cpp:207:17: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_charmm_coul_long_opt.cpp:209:50: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_charmm_coul_long_opt.cpp:209:40: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_temp_com.cpp ../pair_lj_charmm_coul_long_opt.cpp: In member function ‘void LAMMPS_NS::PairLJCharmmCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]’: ../pair_lj_charmm_coul_long_opt.cpp:207:17: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ^~~~~ ../pair_lj_charmm_coul_long_opt.cpp:207:17: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_lj_charmm_coul_long_opt.cpp:209:50: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ../pair_lj_charmm_coul_long_opt.cpp:209:40: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../atom_vec_ellipsoid.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_colloid.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../dump_xtc.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_efield.cpp ../pair_colloid.cpp: In member function ‘virtual void LAMMPS_NS::PairColloid::read_restart(FILE*)’: ../pair_colloid.cpp:401:31: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (comm->me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_colloid.cpp:405:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a12[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_colloid.cpp:406:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_colloid.cpp:407:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_colloid.cpp:408:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&d2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_colloid.cpp:409:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_colloid.cpp: In member function ‘virtual void LAMMPS_NS::PairColloid::read_restart_settings(FILE*)’: ../pair_colloid.cpp:439:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_colloid.cpp:440:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_colloid.cpp:441:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_colloid.cpp: In member function ‘virtual double LAMMPS_NS::PairColloid::single(int, int, int, int, double, double, double, double&)’: ../pair_colloid.cpp:544:20: warning: ‘phi’ may be used uninitialized in this function [-Wmaybe-uninitialized] return factor_lj*phi; ^~~ ../pair_colloid.cpp: In member function ‘virtual void LAMMPS_NS::PairColloid::compute(int, int)’: ../pair_colloid.cpp:195:22: warning: ‘fpair’ may be used uninitialized in this function [-Wmaybe-uninitialized] f[i][2] += delz*fpair; ~~~~^~~~~~ ../dump_xtc.cpp: In function ‘int sizeofint(int)’: ../dump_xtc.cpp:559:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (size >= num && num_of_bits < 32) { ~~~~~^~~~~~ ../dump_xtc.cpp: In function ‘int sizeofints(int, unsigned int*)’: ../dump_xtc.cpp:600:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (bytes[num_of_bytes] >= num) { ~~~~~~~~~~~~~~~~~~~~^~~~~~ ../dump_xtc.cpp: In function ‘void sendints(int*, int, int, unsigned int*, unsigned int*)’: ../dump_xtc.cpp:654:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (num_of_bits >= num_of_bytes * 8) { ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ ../dump_xtc.cpp:655:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i = 0; i < num_of_bytes; i++) { ~~^~~~~~~~~~~~~~ ../dump_xtc.cpp:660:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i = 0; i < num_of_bytes-1; i++) { ~~^~~~~~~~~~~~~~~~ ../dump_xtc.cpp: In function ‘int receivebits(int*, int)’: ../dump_xtc.cpp:695:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (lastbits < num_of_bits) { ~~~~~~~~~^~~~~~~~~~~~~ ../dump_xtc.cpp: In function ‘int xdr3dfcoord(XDR*, float*, int*, float*)’: ../dump_xtc.cpp:935:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { ^ ../dump_xtc.cpp:46:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define MYMIN(a,b) ((a) < (b) ? (a) : (b)) ~~~~^~~~~ ../dump_xtc.cpp:939:14: note: in expansion of macro ‘MYMIN’ maxidx = MYMIN(LASTIDX, smallidx + 8) ; ^~~~~ ../dump_xtc.cpp:46:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] #define MYMIN(a,b) ((a) < (b) ? (a) : (b)) ~~~~^~~~~ ../dump_xtc.cpp:1115:14: note: in expansion of macro ‘MYMIN’ maxidx = MYMIN(LASTIDX, smallidx + 8) ; ^~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_ke_eff.cpp ../dump_xtc.cpp:1141:35: warning: ‘bitsizeint[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] thiscoord[2] = receivebits(buf, bitsizeint[2]); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ ../dump_xtc.cpp:1140:35: warning: ‘bitsizeint[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] thiscoord[1] = receivebits(buf, bitsizeint[1]); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ ../dump_xtc.cpp:1139:35: warning: ‘bitsizeint[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] thiscoord[0] = receivebits(buf, bitsizeint[0]); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ ../dump_xtc.cpp:952:28: warning: ‘prevcoord[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] abs(thiscoord[2] - prevcoord[2]) < larger) { ~~~~~~~~~~~~~^~~~~~~~~~~~~~ ../dump_xtc.cpp:951:28: warning: ‘prevcoord[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] abs(thiscoord[1] - prevcoord[1]) < larger && ~~~~~~~~~~~~~^~~~~~~~~~~~~~ ../dump_xtc.cpp:950:28: warning: ‘prevcoord[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] abs(thiscoord[0] - prevcoord[0]) < larger && ~~~~~~~~~~~~~^~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_coul_cut.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_born_coul_msm.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_thole.cpp ../pair_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulCut::read_restart(FILE*)’: ../pair_coul_cut.cpp:249:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_cut.cpp:252:27: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_cut.cpp: In member function ‘virtual void LAMMPS_NS::PairCoulCut::read_restart_settings(FILE*)’: ../pair_coul_cut.cpp:276:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_cut.cpp:277:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_coul_cut.cpp:278:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_msd_chunk.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../fix_shardlow.cpp ../pair_born_coul_msm.cpp: In member function ‘virtual double LAMMPS_NS::PairBornCoulMSM::single(int, int, int, int, double, double, double, double&)’: ../pair_born_coul_msm.cpp:248:30: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv + ~~~~~~~~~~~~~~~^~~~~ ../pair_born_coul_msm.cpp:248:53: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv + ~~~~~~~~~~~~~~~^~~~~~ ../pair_born_coul_msm.cpp:243:13: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] phicoul = prefactor*egamma; ~~~~~~~~^~~~~~~~~~~~~~~~~~ ../pair_born_coul_msm.cpp:243:13: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] ../pair_born_coul_msm.cpp: In member function ‘virtual void LAMMPS_NS::PairBornCoulMSM::compute(int, int)’: ../pair_born_coul_msm.cpp:189:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv ~~~~~~~~~~~~~~~^~~~~ ../pair_born_coul_msm.cpp:186:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_born_coul_msm.cpp:185:19: warning: ‘egamma’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*egamma; ~~~~~~^~~~~~~~~~~~~~~~~~ ../pair_born_coul_msm.cpp:190:32: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] + d[itype][jtype]*r6inv*r2inv - offset[itype][jtype]; ~~~~~~~~~~~~~~~^~~~~~ ../pair_thole.cpp: In member function ‘virtual void LAMMPS_NS::PairThole::read_restart(FILE*)’: ../pair_thole.cpp:316:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_thole.cpp:320:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&polar[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_thole.cpp:321:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&thole[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_thole.cpp:322:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_thole.cpp: In member function ‘virtual void LAMMPS_NS::PairThole::read_restart_settings(FILE*)’: ../pair_thole.cpp:352:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&thole_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_thole.cpp:353:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_thole.cpp:354:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_thole.cpp:355:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_yukawa.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_temp_ramp.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../bond_gromos_omp.cpp ../pair_yukawa.cpp: In member function ‘virtual void LAMMPS_NS::PairYukawa::read_restart(FILE*)’: ../pair_yukawa.cpp:256:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_yukawa.cpp:260:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_yukawa.cpp:261:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_yukawa.cpp: In member function ‘virtual void LAMMPS_NS::PairYukawa::read_restart_settings(FILE*)’: ../pair_yukawa.cpp:288:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&kappa,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_yukawa.cpp:289:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_yukawa.cpp:290:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_yukawa.cpp:291:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_brownian.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../mgpt_readpot.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_buck_coul_long_cs.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_temp_partial.cpp ../mgpt_readpot.cpp: In member function ‘void potdata::readpot(const char*, const char*, double)’: ../mgpt_readpot.cpp:394:13: warning: variable ‘dp’ set but not used [-Wunused-but-set-variable] double f,dp; ^~ ../mgpt_readpot.cpp:375:18: warning: variable ‘alm’ set but not used [-Wunused-but-set-variable] double alp = al,alm = al; ^~~ ../mgpt_readpot.cpp:158:19: warning: variable ‘dr’ set but not used [-Wunused-but-set-variable] double x0,x1,dx,dr; ^~ ../mgpt_readpot.cpp:187:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../mgpt_readpot.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../mgpt_readpot.cpp:246:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../mgpt_readpot.cpp:306:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../mgpt_readpot.cpp:329:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../mgpt_readpot.cpp:331:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../mgpt_readpot.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../mgpt_readpot.cpp:343:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../mgpt_readpot.cpp:345:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../mgpt_readpot.cpp:358:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../mgpt_readpot.cpp: In function ‘void getparmindata(const char*, int*, double*, double*, double*)’: ../mgpt_readpot.cpp:109:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../mgpt_readpot.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../mgpt_readpot.cpp:123:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ ../pair_brownian.cpp: In member function ‘virtual void LAMMPS_NS::PairBrownian::read_restart(FILE*)’: ../pair_brownian.cpp:610:25: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_brownian.cpp:614:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_brownian.cpp:615:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_brownian.cpp: In member function ‘virtual void LAMMPS_NS::PairBrownian::read_restart_settings(FILE*)’: ../pair_brownian.cpp:650:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_brownian.cpp:651:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flaglog,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_brownian.cpp:652:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagfld,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_brownian.cpp:653:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_brownian.cpp:654:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_brownian.cpp:655:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&t_target, sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_brownian.cpp:656:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed, sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_brownian.cpp:657:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_brownian.cpp:658:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_brownian.cpp:659:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagHI,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ../pair_brownian.cpp:660:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&flagVF,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../pair_extep.cpp ../pair_buck_coul_long_cs.cpp: In member function ‘virtual void LAMMPS_NS::PairBuckCoulLongCS::compute(int, int)’: ../pair_buck_coul_long_cs.cpp:187:36: warning: ‘rexp’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ~~~~~~~~~~~~~~~^~~~~ ../pair_buck_coul_long_cs.cpp:179:21: warning: ‘erfc’ may be used uninitialized in this function [-Wmaybe-uninitialized] ecoul = prefactor*erfc; ~~~~~~^~~~~~~~~~~~~~~~ ../pair_buck_coul_long_cs.cpp:184:62: warning: ‘prefactor’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor; ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../pair_buck_coul_long_cs.cpp:187:59: warning: ‘r6inv’ may be used uninitialized in this function [-Wmaybe-uninitialized] evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv - ~~~~~~~~~~~~~~~^~~~~~ ../pair_buck_coul_long_cs.cpp:181:48: warning: ‘fraction’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ~~~~~~~~^~~~~~~~~~~~~~~~ ../pair_buck_coul_long_cs.cpp:181:36: warning: ‘itable’ may be used uninitialized in this function [-Wmaybe-uninitialized] table = etable[itable] + fraction*detable[itable]; ^ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_nsq_newton.cpp ../pair_brownian.cpp: In member function ‘virtual void LAMMPS_NS::PairBrownian::compute(int, int)’: ../pair_brownian.cpp:309:37: warning: ‘a_pu’ may be used uninitialized in this function [-Wmaybe-uninitialized] Fbmag = prethermostat*sqrt(a_pu); ~~~~^~~~~~ ../pair_brownian.cpp:97:21: warning: ‘a_sh’ may be used uninitialized in this function [-Wmaybe-uninitialized] double xl[3],a_sq,a_sh,a_pu,Fbmag; ^~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../reaxc_hydrogen_bonds.cpp mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../npair_half_bin_atomonly_newton.cpp ../pair_extep.cpp: In member function ‘void LAMMPS_NS::PairExTeP::spline_init()’: ../pair_extep.cpp:1078:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for ( size_t iel=0; ielntypes; iel++) { ~~~^~~~~~~~~~~~~ ../pair_extep.cpp:1079:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for ( size_t jel=0; jelntypes; jel++) { ~~~^~~~~~~~~~~~~ ../npair_half_nsq_newton.cpp: In member function ‘virtual void LAMMPS_NS::NPairHalfNsqNewton::build(LAMMPS_NS::NeighList*)’: ../npair_half_nsq_newton.cpp:121:33: warning: ‘tagprev’ may be used uninitialized in this function [-Wmaybe-uninitialized] which = find_special(onemols[imol]->special[iatom], ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ onemols[imol]->nspecial[iatom], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tag[j]-tagprev); ~~~~~~~~~~~~~~~ ../npair_half_nsq_newton.cpp:122:63: warning: ‘iatom’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_nsq_newton.cpp:122:46: warning: ‘imol’ may be used uninitialized in this function [-Wmaybe-uninitialized] onemols[imol]->nspecial[iatom], ^ ../npair_half_nsq_newton.cpp:91:37: warning: ‘bitmask’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (includegroup && !(mask[j] & bitmask)) continue; ~~~~~~~~~^~~~~~~~~~ mpicxx -Wall -g -O2 -fdebug-prefix-map=/<>/src/Obj_mpi=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c++0x -I/usr/include/eigen3 -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_JPEG -DLMP_USER_OMP -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -c ../compute_orientorder_atom.cpp mpicxx -O -Wl,-Bsymbolic-functions -Wl,-z,relro pair_lj_long_dipole_long.o pair_lj_long_coul_long_opt.o pair_buck_omp.o fix_external.o ntopo_dihedral_template.o run.o image.o fix_rigid_nve_omp.o npair_full_nsq_omp.o npair_full_bin_atomonly_omp.o pair_morse_smooth_linear.o pair_mdpd_rhosum.o npair_halffull_newton_omp.o neigh_list.o pair_lj_cut_dipole_cut_omp.o pair_edpd.o rerun.o pair_ufm_omp.o pair_lj_expand_omp.o pair_lj_cut_dipole_long.o compute_chunk_atom.o angle_sdk_omp.o atom_vec_mdpd.o pair_buck.o atom_vec_charge.o fix_ave_correlate_long.o fix_nve_eff.o temper_grem.o pair_table_rx.o pair_resquared_omp.o pair_beck_omp.o fix_setforce.o pair_lj_cut_tip4p_long_soft.o fix_rigid_nve.o write_dump.o reset_ids.o bond_table_omp.o npair_full_bin_atomonly.o compute_angle_local.o pair_buck_mdf.o region_plane.o random_mars.o fix_eos_table_rx.o fix_mvv_edpd.o pair_ufm.o pair_lj_expand.o pair_hybrid.o fix_langevin_eff.o angle_harmonic.o fix_wall.o compute_pressure_uef.o improper_cossq_omp.o fix_manifoldforce.o pair_edip.o pair_resquared.o pair_lj_sf_dipole_sf.o pair_airebo_omp.o pair_lj_cubic_omp.o compute_pair_local.o fix_nphug_omp.o reaxc_allocate.o npair_half_respa_bin_newton_tri_omp.o pair_gran_hertz_history_omp.o fix_ave_time.o fix_peri_neigh_omp.o pair_coul_wolf_omp.o bond_nonlinear.o npair_half_multi_newton_tri.o pair_lj_cut_soft.o pair_lj_sf_dipole_sf_omp.o bond_harmonic_shift.o fix_npt_uef.o angle_fourier_simple.o fix_evaporate.o atom_vec_body.o pair_bop.o npair_full_bin_ghost.o fix_eos_cv.o improper_ring.o pair_adp.o manifold_plane.o pair_hybrid_overlay.o comm.o npair_half_respa_nsq_newton.o compute_damage_atom.o atom_vec_sphere.o group.o fix_nve_sphere_omp.o bond_harmonic.o pair_coul_wolf.o dump_xyz.o manifold_plane_wiggle.o mgpt_splinetab.o fix_temp_berendsen.o fix_ave_atom.o manifold_dumbbell.o pair_lubricateU.o fix_event.o atom_vec.o fix_ave_chunk.o reaxc_bonds_omp.o fix_nve_omp.o fix_nve_body.o fix_spring_rg.o pair_momb.o npair_half_nsq_newtoff_omp.o pair_morse_opt.o compute_spec_atom.o npair_half_nsq_newtoff_ghost_omp.o fix_qbmsst.o pair_edip_omp.o fix_move.o fix_nve_sphere.o dihedral_charmm_omp.o fix_ehex.o fix_nve_asphere.o pair_lj_cut_coul_msm.o fix_ti_spring.o fix_nvt.o fix_flow_gauss.o npair_full_nsq_ghost_omp.o create_atoms.o bond_nonlinear_omp.o pair_lj_smooth_linear_omp.o imbalance_neigh.o pair_lj_charmmfsw_coul_charmmfsh.o compute_meso_rho_atom.o gridcomm.o reaxc_bonds.o replicate.o ntopo_angle_partial.o fix_nve.o pair_coul_shield.o reaxc_nonbonded.o improper_hybrid.o compute_temp_cs.o pair_lj_cut_tip4p_long_opt.o fix_store.o fix_omp.o npair_half_respa_nsq_newtoff_omp.o atom_vec_molecular.o pair_lj_sdk_omp.o angle_sdk.o manifold_spine.o compute_contact_atom.o region_intersect.o fix_langevin.o compute_angmom_chunk.o integrate.o angle_hybrid.o npair_full_bin.o npair_half_size_nsq_newton_omp.o compute_cna_atom.o compute_slice.o compute_dilatation_atom.o pair_gauss_cut.o improper_class2_omp.o npair_half_size_bin_newtoff_omp.o fix_rigid_npt_small.o fix_smd.o fix_store_state.o pair_lj_smooth.o region.o pair_soft.o pair_ilp_graphene_hbn.o imbalance_time.o ntopo_improper_partial.o pair_lj_sdk.o angle_fourier.o fix_qtb.o npair_half_bin_newton.o pair_tersoff_mod_c.o fix_rigid_nph_small.o fix_drude.o write_restart.o fix_nve_asphere_noforce.o compute_ackland_atom.o dihedral_hybrid.o fix_temp_csvr.o write_coeff.o temper.o angle_cosine_periodic.o pair_lj_charmm_coul_charmm_implicit.o min_cg.o compute_cnp_atom.o compute_ke.o improper_class2.o npair_half_size_bin_newtoff.o fix_npt_body.o pppm_stagger.o npair_full_nsq.o dihedral_class2_omp.o nbin_standard.o kspace.o fix_nph_eff.o compute_stress_tally.o improper_ring_omp.o fix_nve_manifold_rattle.o pair_lj_charmm_coul_msm_omp.o dihedral_nharmonic.o fix_rigid_nph.o fix_rigid_omp.o fix_adapt.o dihedral_fourier_omp.o compute_displace_atom.o pair_yukawa_colloid_omp.o msm_omp.o npair_half_multi_newton.o pair_dpd_tstat_omp.o atom_vec_atomic.o pair_brownian_poly.o fix_restrain.o manifold_cylinder.o pair_tersoff_omp.o dihedral_helix.o npair_half_bin_newtoff_ghost_omp.o dihedral_multi_harmonic.o compute_reduce_region.o dump_atom.o pair_hbond_dreiding_morse_omp.o bond_zero.o pair_lj_charmm_coul_long_omp.o pair_mgpt.o pair_buck_coul_msm.o fix_nh_sphere_omp.o atom_vec_peri.o pair_lj_cut_dipole_cut.o angle_cosine.o pair_sph_heatconduction.o pair_sph_idealgas.o pair_lj_cut_thole_long_omp.o dihedral_zero.o pair_lj_cut_coul_msm_omp.o pair_lj_cut_coul_debye_omp.o pair_eam_fs_opt.o fix_rigid.o bond_class2_omp.o reaxc_tool_box.o fix_wall_lj126.o pair_born_coul_wolf_omp.o pair_yukawa_colloid.o fix_nh_omp.o fix_nh_body.o fix_ipi.o xdr_compat.o pair_oxdna_hbond.o pair_lj_long_coul_long.o npair_skip_size_off2on_oneside.o pair_lj_sdk_coul_msm_omp.o nstencil_half_multi_3d_newton_tri.o fft3d_wrap.o thr_data.o pppm_disp_tip4p_omp.o domain_omp.o minimize.o fix_nh_sphere.o pair_sph_taitwater_morris.o fix_msst.o reader.o pair_lennard_mdf.o fix_nvt_eff.o respa_omp.o read_restart.o imbalance.o compute_group_group.o bond_class2.o pair_nm_cut_coul_cut_omp.o pair_born_coul_wolf.o compute_dipole_chunk.o pair_lubricate.o pair_lubricate_poly_omp.o pair_nm_cut_coul_long.o pair_lj_cut_opt.o compute_hexorder_atom.o pppm_disp_omp.o npair_halffull_newtoff.o pair_lj_sdk_coul_msm.o fix_nvt_manifold_rattle.o pair_tip4p_cut.o bond_harmonic_omp.o msm.o main.o pair_lj_smooth_omp.o improper_harmonic.o read_data.o fix_bocs.o fix_enforce2d.o improper_distance.o pair_mdpd.o nstencil_full_bin_3d.o compute_sna_atom.o pair_lj_cut_coul_cut.o compute_event_displace.o compute_temp_drude.o compute_vcm_chunk.o compute_pe.o npair_half_bin_newtoff_omp.o pair_buck_coul_msm_omp.o imbalance_group.o nstencil.o npair_skip_size.o compute.o pair_dpd_omp.o nstencil_full_ghost_bin_2d.o dihedral_quadratic.o pair_coul_long_cs.o pair_lubricate_omp.o python.o error.o ntopo_bond_partial.o pair_polymorphic.o pair_born_coul_long_omp.o fix_mvv_tdpd.o fix_nve_tri.o comm_brick.o npair_halffull_newtoff_omp.o pair_lj_cut_coul_dsf_omp.o bond_fene_expand.o fix_nvt_sllod_omp.o region_cone.o fix_rattle.o delete_atoms.o npair_half_bin_newtoff.o compute_ti.o reaxc_valence_angles.o comm_tiled.o pair_peri_ves.o remap_wrap.o fix_nvk.o pair_lj_charmm_coul_long_soft_omp.o compute_erotate_rigid.o fix_press_berendsen.o compute_heat_flux_tally.o fix_qeq_fire.o fix_edpd_source.o fix_gle.o fix_print.o fix_rigid_nh_omp.o pair_coul_long_soft_omp.o npair_half_size_bin_newton_tri.o compute_pressure_bocs.o pair_dpd.o dump_movie.o nstencil_half_multi_2d_newton_tri.o pair_eam_alloy.o fix_nvt_sllod.o ntopo_improper_template.o compute_meso_t_atom.o pair_lj96_cut.o fix_tmd.o pair_tersoff_zbl_omp.o force.o pair_lj_cut_omp.o fix_nh_eff.o fix_rigid_nve_small.o pair_nm_cut_coul_cut.o dihedral_charmm.o library.o npair_half_respa_bin_newton_omp.o compute_dpd.o pair_tersoff_mod_c_omp.o fix_rigid_nh.o pair_coul_cut_soft_omp.o fix_spring_self.o bond_fene_expand_omp.o pair_tip4p_long_omp.o pair_coul_long_soft.o balance.o pair_sw_omp.o pair_hbond_dreiding_lj_omp.o pair_zero.o compute_heat_flux.o pair_vashishta_omp.o angle_zero.o fix_wall_srd.o fix_qeq_shielded.o fix_npt_asphere.o pppm_omp.o pair_mie_cut.o pair_tersoff_zbl.o bond_hybrid.o compute_basal_atom.o compute_gyration.o pair_eam.o pair_lj_class2_omp.o dump_local.o angle_class2_omp.o fix_viscous.o pair_tip4p_cut_omp.o npair_half_respa_bin_newton.o pair_coul_cut_soft.o info.o fix_wall_ees.o pair_gran_hooke.o pppm_disp.o pair_tip4p_long.o pair_lj_charmm_coul_msm.o nstencil_full_multi_2d.o npair_half_nsq_newtoff.o reaxc_multi_body_omp.o pair_sw.o pair_agni.o compute_ke_atom_eff.o pair_lj_sdk_coul_long_omp.o compute_dihedral.o dihedral_fourier.o pair_vashishta.o fix_srd.o pppm.o sna.o pair_coul_diel_omp.o compute_bond_local.o dihedral_quadratic_omp.o dihedral_spherical.o reaxc_forces_omp.o angle_dipole_omp.o pair_lj_class2.o nstencil_full_ghost_bin_3d.o fix_qeq_dynamic.o pair_born_coul_msm_omp.o nstencil_half_bin_3d_newton.o pair_lj_cut_soft_omp.o fix_filter_corotate.o nstencil_full_bin_2d.o pair_coul_streitz.o create_bonds.o fix_ave_histo_weight.o reaxc_ffield.o manifold_thylakoid_shared.o improper_harmonic_omp.o npair_full_bin_ghost_omp.o atom_vec_meso.o fix_nphug.o lattice.o compute_temp_profile.o fix_drag.o reaxc_traj.o pair_coul_diel.o compute_ke_atom.o respa.o ntopo_bond_all.o fix_nvt_sllod_eff.o improper_umbrella.o fix_wall_piston.o reaxc_forces.o pair_eam_alloy_omp.o fix_wall_gran.o pair_coul_msm.o region_block.o fix_langevin_drude.o fix_npt_asphere_omp.o pair_oxdna_coaxstk.o dump_cfg.o fix_nvt_uef.o fix_wall_reflect.o pair_coul_dsf_omp.o reaxc_init_md_omp.o atom_vec_dipole.o fix_halt.o compute_omega_chunk.o pair_multi_lucy_rx.o fix_grem.o npair_half_bin_newton_omp.o pair_edip_multi.o atom_vec_tri.o fft3d.o bond_gromos.o npair_half_nsq_newton_omp.o fix_rigid_npt_omp.o pair_cdeam_omp.o fix_thermal_conductivity.o pair_lj_cut_coul_long_omp.o fix_srp.o pair_gran_hooke_omp.o pair_agni_omp.o nstencil_half_multi_2d_newtoff.o fix_gld.o bond_quartic_omp.o variable.o fix_recenter.o fix_wall_lj93.o pair_coul_dsf.o reaxc_init_md.o pair_zbl_omp.o fix_bond_swap.o pair_nb3b_harmonic_omp.o fix_gcmc.o pair_beck.o reaxc_io_tools.o irregular.o fix_wall_lj1043.o fix_npt_eff.o compute_pair.o dihedral_opls_omp.o fix_rigid_npt.o bond_morse_omp.o pair_peri_pmb_omp.o pair_cdeam.o output.o nstencil_half_bin_2d_newton.o nstencil_half_bin_2d_newton_tri.o pair_lj_gromacs_omp.o bond_oxdna2_fene.o neigh_request.o fix_wall_gran_region.o pair_eim_omp.o pair_eam_opt.o pair_table_omp.o angle_table_omp.o pair_oxdna2_excv.o pair_lubricate_poly.o pair_nm_cut_coul_long_omp.o pair_nb3b_harmonic.o finish.o min_fire.o fix_gravity.o ewald_omp.o bond_quartic.o dihedral_opls.o bond_morse.o compute_saed.o pair_peri_pmb.o molecule.o random_park.o pair_gran_hooke_history_omp.o pair_exp6_rx.o pair_lj_smooth_linear.o pair_lj_cut_coul_long_opt.o fix_saed_vtk.o pair_lj_cut.o pair_gran_hertz_history.o pair_eim.o pair_table.o npair_half_size_nsq_newton.o angle_table.o npair_halffull_newton.o compute_pe_tally.o delete_bonds.o remap.o pair_tersoff_mod.o compute_fragment_atom.o fix_reaxc.o pair_line_lj.o fix_rigid_nvt_small.o fix_gravity_omp.o pair_reaxc_omp.o fix_eos_table.o manifold_ellipsoid.o ewald.o compute_com_chunk.o reaxc_multi_body.o compute_temp_chunk.o compute_temp_uef.o compute_temp_asphere.o min_linesearch.o pair_tersoff_mod_omp.o pair_gran_hooke_history.o improper_zero.o angle_cosine_shift_omp.o pair_soft_omp.o fix_qeq_slater.o compute_msd_nongauss.o ntopo_bond_template.o pair_srp.o fix_qeq_point.o pair_lcbop.o neb.o pair_lj_gromacs.o pair_lj_class2_coul_cut_omp.o pair_eff_cut.o pair_reaxc.o fix_qeq_comb_omp.o pair_lj_charmm_coul_long_soft.o compute_property_local.o pair_born_coul_dsf.o improper.o pair_eam_omp.o npair_half_size_nsq_newtoff_omp.o pair_tersoff_table_omp.o reaxc_lookup.o pair_lj_cut_thole_long.o nstencil_full_multi_3d.o npair_half_size_bin_newton_omp.o pair_dpd_tstat.o angle_fourier_omp.o bond_fene_omp.o angle_quartic_omp.o compute_temp_body.o pair_lj_long_coul_long_omp.o npair_half_multi_newtoff_omp.o compute_edpd_temp_atom.o compute_angle.o fix_planeforce.o pair_lj_cut_coul_cut_omp.o meam_funcs.o compute_pe_atom.o pair_zbl.o npair_skip_size_off2on.o min_hftn.o fix_nvt_asphere_omp.o compute_temp_region.o fix_qeq_comb.o dihedral_cosine_shift_exp_omp.o atom_vec_edpd.o thermo.o pair_buck6d_coul_gauss_long.o pair_oxdna_excv.o compute_stress_atom.o pair_tri_lj.o fix_respa.o angle_cosine_delta_omp.o pair_tersoff_table.o fix_cmap.o pair_coul_msm_omp.o pair_lj_long_tip4p_long_omp.o compute_pressure_grem.o dump_image.o npair_half_size_bin_newton.o pair_born_coul_wolf_cs.o compute_fep.o fix_ttm_mod.o npair_half_bin_newton_tri_omp.o compute_temp.o pair_tdpd.o compute_pressure.o pair_lj_cut_coul_long_cs.o npair_half_multi_newtoff.o pair_kolmogorov_crespi_z.o dihedral_table_omp.o fix_ttm.o improper_umbrella_omp.o pair_lj_class2_coul_long_omp.o ntopo_dihedral_partial.o fix_event_prd.o pair_lj96_cut_omp.o compute_pe_mol_tally.o pair_meam_sw_spline.o fix_nvt_asphere.o compute_body_local.o meam_dens_final.o dihedral_cosine_shift_exp.o prd.o pair_lj_cut_coul_wolf.o fix_adapt_fep.o angle_cosine_delta.o fix_dt_reset.o npair_half_bin_newtoff_ghost.o pair_airebo.o pair_snap.o meam_setup_done.o compute_vacf.o citeme.o meam_setup_param.o npair_half_nsq_newtoff_ghost.o pair_born_omp.o fix_indent.o pair_gauss_omp.o pair_morse_omp.o write_data.o body.o pair_lj_class2_coul_long.o update.o fix_nvt_sphere_omp.o pair_lj_cut_coul_long_soft_omp.o universe.o fix_rx.o atom_vec_bond.o compute_property_chunk.o fix_atom_swap.o pair_nm_cut.o special.o pair_dpd_fdt_energy.o pair_sph_taitwater.o compute_dpd_atom.o npair_copy.o fix_read_restart.o bond_harmonic_shift_omp.o fix_nvt_omp.o fix_nvt_body.o fix_minimize.o ntopo_improper_all.o pair_peri_eps.o angle_quartic.o pair_gauss.o pair_lj_cut_coul_cut_soft_omp.o pair_morse.o fix_oneway.o change_box.o nstencil_half_bin_3d_newton_ssa.o compute_ke_rigid.o region_prism.o pair_lj_cut_tip4p_long_omp.o fix_spring_chunk.o pair_lj_cut_coul_long_soft.o fix_rigid_nph_omp.o angle_cosine_squared_omp.o pair_lj_cut_coul_cut_soft.o msm_cg_omp.o compute_erotate_asphere.o pair_multi_lucy.o angle_class2.o fix_momentum.o pair_meam_spline_omp.o compute_temp_region_eff.o pair_sph_lj.o ntopo_angle_template.o fix_neigh_history_omp.o msm_cg.o fix_deposit.o fix_wall_gran_omp.o fix_heat.o meam_force.o fix_nve_limit.o dihedral_harmonic_omp.o fix_rigid_small_omp.o imbalance_var.o pair_born.o compute_temp_eff.o pair_lj_cut_tip4p_long.o pair_coul_cut_omp.o compute_meso_e_atom.o memory.o fix_addtorque.o angle_cosine_squared.o fix_aveforce.o fix_viscosity.o dihedral_class2.o compute_centro_atom.o nstencil_half_multi_3d_newton.o pair_oxdna2_stk.o compute_global_atom.o pair_gw.o compute_aggregate_atom.o fix_neigh_history.o pair_comb_omp.o manifold_torus.o fix_bond_break.o fix_imd.o pair_lj_cut_tip4p_cut.o dihedral_harmonic.o fix_rigid_small.o pair_lj_cut_coul_long.o pair_eam_alloy_opt.o pair_oxdna2_dh.o ntopo.o atom_map.o npair_full_nsq_ghost.o ewald_disp.o compute_com.o timer.o pair_vashishta_table_omp.o npair_half_bin_newton_tri.o pair_coul_debye_omp.o compute_snav_atom.o compute_msd.o dump_custom.o nstencil_half_ghost_bin_3d_newtoff.o fix_bond_react.o fix_tfmc.o min_quickmin.o reaxc_bond_orders_omp.o fix_box_relax.o angle_cosine_shift_exp_omp.o reaxc_hydrogen_bonds_omp.o meam_setup_global.o dihedral_charmmfsw.o compute_temp_rotate.o pair_lubricateU_poly.o pair_list.o pair_oxdna2_coaxstk.o tad.o pair_lj_cut_coul_wolf_omp.o fix.o fix_nph_asphere_omp.o fix_ave_correlate.o bond.o compute_coord_atom.o pppm_tip4p_omp.o fix_rigid_nvt_omp.o npair_half_respa_bin_newtoff_omp.o compute_reduce.o fix_mvv_dpd.o dihedral_nharmonic_omp.o velocity.o pair_vashishta_table.o fix_nh_uef.o domain.o fix_temp_csld.o compute_erotate_sphere.o reaxc_bond_orders.o fix_meso_stationary.o fix_deprecated.o region_union.o nstencil_half_bin_2d_newton_ssa.o neighbor.o fix_qeq_reax_omp.o pair_tip4p_long_soft_omp.o fix_vector.o read_dump.o compute_temp_deform.o pair_lj_sdk_coul_long.o manifold_gaussian_bump.o fix_nph_asphere.o pair_nm_cut_omp.o procmap.o uef_utils.o compute_cluster_atom.o pppm_tip4p.o fix_rigid_nvt.o npair_half_respa_bin_newtoff.o pair_lj_charmm_coul_charmm_omp.o fix_orient_bcc.o pair_buck6d_coul_gauss_dsf.o pair_meamc.o npair_skip.o compute_plasticity_atom.o math_special.o reaxc_list.o pair_rebo_omp.o pair_dpd_fdt.o npair_skip_respa.o fix_ave_histo.o angle_cosine_buck6d.o bond_fene.o displace_atoms.o improper_inversion_harmonic.o reader_xyz.o pair_buck_coul_long_omp.o fix_nh_asphere.o pair_tip4p_long_soft.o verlet_split.o pair_dsmc.o fix_nph_sphere_omp.o pair_lj_charmm_coul_charmm.o fix_append_atoms.o atom.o pair_hbond_dreiding_morse.o thr_omp.o nstencil_half_multi_2d_newton.o fix_wall_harmonic.o pair_oxdna_stk.o reaxc_torsion_angles.o math_extra.o angle_fourier_simple_omp.o pair_lj_gromacs_coul_gromacs_omp.o nstencil_half_bin_3d_newtoff.o temper_npt.o compute_rigid_local.o pair_coul_wolf_cs.o min.o fix_controller.o pair_gauss_cut_omp.o reaxc_control.o fix_nph_omp.o fix_nph_body.o compute_rdf.o pair_buck_coul_cut_omp.o pair_rebo.o npair_full_multi.o pair_oxdna_xstk.o fix_meso.o pppm_cg_omp.o fix_reaxc_bonds.o pair_buck_coul_long.o input.o nbin.o compute_tdpd_cc_atom.o fix_nph_sphere.o fix_lineforce.o fix_wall_region.o pair_born_coul_long_cs.o create_box.o compute_temp_sphere.o nstencil_half_ghost_bin_2d_newtoff.o angle_dipole.o compute_gyration_chunk.o angle_harmonic_omp.o pair_lj_gromacs_coul_gromacs.o fix_bond_create.o atom_vec_line.o reaxc_nonbonded_omp.o fix_nph.o pair_gw_zbl.o pair_buck_coul_cut.o fix_tune_kspace.o fix_phonon.o fix_rigid_nh_small.o manifold_factory.o pppm_cg.o improper_cvff_omp.o npair_half_size_bin_newton_tri_omp.o angle_cosine_shift.o npair_half_respa_nsq_newtoff.o manifold_thylakoid.o modify.o compute_dihedral_local.o fix_spring.o bond_harmonic_shift_cut_omp.o compute_erotate_sphere_atom.o improper_cvff.o fix_reaxc_species.o dump_cfg_uef.o pair_lj_mdf.o rcb.o dihedral_helix_omp.o fix_nh.o fix_pour.o fix_nvt_sphere.o fix_nve_line.o npair_full_multi_omp.o atom_vec_angle.o fix_nve_dotc_langevin.o npair.o pair_body.o compute_snad_atom.o meam_dens_init.o reaxc_vector.o fix_store_force.o compute_improper_local.o lammps.o ntopo_dihedral_all.o pair_lj_long_tip4p_long.o compute_temp_deform_eff.o npair_half_multi_newton_tri_omp.o bond_harmonic_shift_cut.o pair_morse_smooth_linear_omp.o pair_gayberne_omp.o pair_comb.o set.o reaxc_reset_tools.o region_cylinder.o pair_brownian_poly_omp.o angle_cosine_omp.o npair_full_bin_omp.o fix_rhok.o pair_lj_cut_tip4p_long_soft_omp.o fix_dpd_energy.o pair.o angle.o compute_inertia_chunk.o fix_nh_asphere_omp.o pair_born_coul_dsf_cs.o fix_group.o region_sphere.o compute_improper.o fix_drude_transform.o nstencil_half_bin_2d_newtoff.o npair_half_bin_newton_ssa.o npair_half_respa_nsq_newton_omp.o pair_ufm_opt.o fix_neb.o atom_vec_tdpd.o pair_gayberne.o atom_vec_electron.o npair_half_multi_newton_omp.o atom_vec_full.o dihedral_multi_harmonic_omp.o min_sd.o pair_tersoff.o verlet.o ntopo_angle_all.o pair_morse_soft.o imbalance_store.o pair_sph_rhosum.o angle_cosine_shift_exp.o npair_half_size_nsq_newtoff.o fix_temp_rescale_eff.o angle_charmm_omp.o nbin_ssa.o pair_buck_long_coul_long_omp.o pair_born_coul_long.o fix_qeq_reax.o improper_cossq.o angle_class2_p6.o fix_npt_sphere_omp.o bond_oxdna_fene.o manifold_cylinder_dent.o pppm_disp_tip4p.o fix_property_atom.o pair_lj_cut_coul_dsf.o atom_vec_dpd.o fix_wall_region_ees.o reaxc_torsion_angles_omp.o pair_lj_cubic.o fix_wall_colloid.o dump.o pair_lj_class2_coul_cut.o pair_meam_spline.o npair_half_respa_bin_newton_tri.o atom_vec_template.o fix_npt_omp.o nstencil_half_multi_3d_newtoff.o meam_impl.o pair_airebo_morse_omp.o pair_peri_lps_omp.o angle_charmm.o pair_smtbq.o pair_coul_long_omp.o improper_fourier_omp.o fix_orient_fcc.o mgpt_linalg.o pair_buck_long_coul_long.o fix_shake.o bond_table.o fix_addforce.o atom_vec_hybrid.o pair_hbond_dreiding_lj.o fix_npt_sphere.o fix_nve_noforce.o fix_balance.o fix_event_tad.o pair_lj_charmm_coul_charmm_implicit_omp.o angle_cosine_periodic_omp.o dihedral_table.o compute_bond.o pair_lj_charmmfsw_coul_long.o pair_eam_fs_omp.o compute_torque_chunk.o reader_native.o compute_force_tally.o pair_coul_debye.o pair_lj_cut_tip4p_cut_omp.o pair_colloid_omp.o fix_freeze.o nstencil_half_bin_3d_newton_tri.o fix_npt.o body_nparticle.o pair_airebo_morse.o pair_peri_lps.o pair_kolmogorov_crespi_full.o pair_coul_long.o improper_fourier.o pair_yukawa_omp.o compute_property_atom.o fix_qeq.o reaxc_system_props.o pair_brownian_omp.o fix_deform.o pair_comb3.o compute_xrd.o pair_lj_cut_coul_debye.o dihedral.o fix_peri_neigh.o fix_tdpd_source.o fix_pimd.o dump_dcd.o pair_lj_charmm_coul_long.o npair_half_bin_atomonly_newton_omp.o reaxc_valence_angles_omp.o pair_adp_omp.o fix_nve_dot.o pair_eam_fs.o pair_lj_charmm_coul_long_opt.o fix_temp_rescale.o compute_temp_com.o atom_vec_ellipsoid.o pair_colloid.o dump_xtc.o fix_efield.o compute_ke_eff.o pair_coul_cut.o pair_born_coul_msm.o pair_thole.o compute_msd_chunk.o fix_shardlow.o pair_yukawa.o compute_temp_ramp.o bond_gromos_omp.o pair_brownian.o mgpt_readpot.o pair_buck_coul_long_cs.o compute_temp_partial.o pair_extep.o npair_half_nsq_newton.o reaxc_hydrogen_bonds.o npair_half_bin_atomonly_newton.o compute_orientorder_atom.o -lfftw3 -ljpeg -lstdc++ -fopenmp -o ../lmp_mpi size ../lmp_mpi text data bss dec hex filename 16486666 427505 34688 16948859 1029e7b ../lmp_mpi make[3]: Leaving directory '/<>/src/Obj_mpi' make[2]: Leaving directory '/<>/src' mv src/lmp_mpi src/lammps make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/<>' cd doc; /usr/bin/make old; /usr/bin/make pdf make[2]: Entering directory '/<>/doc' /bin/bash: python: command not found /bin/bash: python: command not found /bin/bash: python: command not found /bin/bash: python: command not found /bin/bash: python: command not found /bin/bash: python: command not found /bin/bash: python: command not found /bin/bash: python: command not found /bin/bash: python: command not found /bin/bash: python: command not found /bin/bash: python: command not found g++ -O -Wall -o utils/txt2html/txt2html.exe utils/txt2html/txt2html.cpp Converting Manual.txt ... Converting Section_accelerate.txt ... Converting Section_commands.txt ... Converting Section_errors.txt ... Converting Section_example.txt ... Converting Section_history.txt ... Converting Section_howto.txt ... Converting Section_intro.txt ... Converting Section_modify.txt ... Converting Section_packages.txt ... Converting Section_perf.txt ... Converting Section_python.txt ... Converting Section_start.txt ... Converting Section_tools.txt ... Converting accelerate_gpu.txt ... Converting accelerate_intel.txt ... Converting accelerate_kokkos.txt ... Converting accelerate_omp.txt ... Converting accelerate_opt.txt ... Converting angle_charmm.txt ... Converting angle_class2.txt ... Converting angle_coeff.txt ... Converting angle_cosine.txt ... Converting angle_cosine_buck6d.txt ... Converting angle_cosine_delta.txt ... Converting angle_cosine_periodic.txt ... Converting angle_cosine_shift.txt ... Converting angle_cosine_shift_exp.txt ... Converting angle_cosine_squared.txt ... Converting angle_dipole.txt ... Converting angle_fourier.txt ... Converting angle_fourier_simple.txt ... Converting angle_harmonic.txt ... Converting angle_hybrid.txt ... Converting angle_none.txt ... Converting angle_quartic.txt ... Converting angle_sdk.txt ... Converting angle_style.txt ... Converting angle_table.txt ... Converting angle_zero.txt ... Converting angles.txt ... Converting atom_modify.txt ... Converting atom_style.txt ... Converting balance.txt ... Converting body.txt ... Converting bond_class2.txt ... Converting bond_coeff.txt ... Converting bond_fene.txt ... Converting bond_fene_expand.txt ... Converting bond_gromos.txt ... Converting bond_harmonic.txt ... Converting bond_harmonic_shift.txt ... Converting bond_harmonic_shift_cut.txt ... Converting bond_hybrid.txt ... Converting bond_morse.txt ... Converting bond_none.txt ... Converting bond_nonlinear.txt ... Converting bond_oxdna.txt ... Converting bond_quartic.txt ... Converting bond_style.txt ... Converting bond_table.txt ... Converting bond_write.txt ... Converting bond_zero.txt ... Converting bonds.txt ... Converting boundary.txt ... Converting box.txt ... Converting change_box.txt ... Converting clear.txt ... Converting comm_modify.txt ... Converting comm_style.txt ... Converting commands.txt ... Converting compute.txt ... Converting compute_ackland_atom.txt ... Converting compute_angle.txt ... Converting compute_angle_local.txt ... Converting compute_angmom_chunk.txt ... Converting compute_basal_atom.txt ... Converting compute_body_local.txt ... Converting compute_bond.txt ... Converting compute_bond_local.txt ... Converting compute_centro_atom.txt ... Converting compute_chunk_atom.txt ... Converting compute_cluster_atom.txt ... Converting compute_cna_atom.txt ... Converting compute_cnp_atom.txt ... Converting compute_com.txt ... Converting compute_com_chunk.txt ... Converting compute_contact_atom.txt ... Converting compute_coord_atom.txt ... Converting compute_damage_atom.txt ... Converting compute_dihedral.txt ... Converting compute_dihedral_local.txt ... Converting compute_dilatation_atom.txt ... Converting compute_dipole_chunk.txt ... Converting compute_displace_atom.txt ... Converting compute_dpd.txt ... Converting compute_dpd_atom.txt ... Converting compute_edpd_temp_atom.txt ... Converting compute_erotate_asphere.txt ... Converting compute_erotate_rigid.txt ... Converting compute_erotate_sphere.txt ... Converting compute_erotate_sphere_atom.txt ... Converting compute_event_displace.txt ... Converting compute_fep.txt ... Converting compute_global_atom.txt ... Converting compute_group_group.txt ... Converting compute_gyration.txt ... Converting compute_gyration_chunk.txt ... Converting compute_heat_flux.txt ... Converting compute_hexorder_atom.txt ... Converting compute_improper.txt ... Converting compute_improper_local.txt ... Converting compute_inertia_chunk.txt ... Converting compute_ke.txt ... Converting compute_ke_atom.txt ... Converting compute_ke_atom_eff.txt ... Converting compute_ke_eff.txt ... Converting compute_ke_rigid.txt ... Converting compute_meso_e_atom.txt ... Converting compute_meso_rho_atom.txt ... Converting compute_meso_t_atom.txt ... Converting compute_modify.txt ... Converting compute_msd.txt ... Converting compute_msd_chunk.txt ... Converting compute_msd_nongauss.txt ... Converting compute_omega_chunk.txt ... Converting compute_orientorder_atom.txt ... Converting compute_pair.txt ... Converting compute_pair_local.txt ... Converting compute_pe.txt ... Converting compute_pe_atom.txt ... Converting compute_plasticity_atom.txt ... Converting compute_pressure.txt ... Converting compute_pressure_uef.txt ... Converting compute_property_atom.txt ... Converting compute_property_chunk.txt ... Converting compute_property_local.txt ... Converting compute_rdf.txt ... Converting compute_reduce.txt ... Converting compute_rigid_local.txt ... Converting compute_saed.txt ... Converting compute_slice.txt ... Converting compute_smd_contact_radius.txt ... Converting compute_smd_damage.txt ... Converting compute_smd_hourglass_error.txt ... Converting compute_smd_internal_energy.txt ... Converting compute_smd_plastic_strain.txt ... Converting compute_smd_plastic_strain_rate.txt ... Converting compute_smd_rho.txt ... Converting compute_smd_tlsph_defgrad.txt ... Converting compute_smd_tlsph_dt.txt ... Converting compute_smd_tlsph_num_neighs.txt ... Converting compute_smd_tlsph_shape.txt ... Converting compute_smd_tlsph_strain.txt ... Converting compute_smd_tlsph_strain_rate.txt ... Converting compute_smd_tlsph_stress.txt ... Converting compute_smd_triangle_mesh_vertices.txt ... Converting compute_smd_ulsph_num_neighs.txt ... Converting compute_smd_ulsph_strain.txt ... Converting compute_smd_ulsph_strain_rate.txt ... Converting compute_smd_ulsph_stress.txt ... Converting compute_smd_vol.txt ... Converting compute_sna_atom.txt ... Converting compute_stress_atom.txt ... Converting compute_tally.txt ... Converting compute_tdpd_cc_atom.txt ... Converting compute_temp.txt ... Converting compute_temp_asphere.txt ... Converting compute_temp_body.txt ... Converting compute_temp_chunk.txt ... Converting compute_temp_com.txt ... Converting compute_temp_cs.txt ... Converting compute_temp_deform.txt ... Converting compute_temp_deform_eff.txt ... Converting compute_temp_drude.txt ... Converting compute_temp_eff.txt ... Converting compute_temp_partial.txt ... Converting compute_temp_profile.txt ... Converting compute_temp_ramp.txt ... Converting compute_temp_region.txt ... Converting compute_temp_region_eff.txt ... Converting compute_temp_rotate.txt ... Converting compute_temp_sphere.txt ... Converting compute_temp_uef.txt ... Converting compute_ti.txt ... Converting compute_torque_chunk.txt ... Converting compute_vacf.txt ... Converting compute_vcm_chunk.txt ... Converting compute_voronoi_atom.txt ... Converting compute_xrd.txt ... Converting computes.txt ... Converting create_atoms.txt ... Converting create_bonds.txt ... Converting create_box.txt ... Converting delete_atoms.txt ... Converting delete_bonds.txt ... Converting dielectric.txt ... Converting dihedral_charmm.txt ... Converting dihedral_class2.txt ... Converting dihedral_coeff.txt ... Converting dihedral_cosine_shift_exp.txt ... Converting dihedral_fourier.txt ... Converting dihedral_harmonic.txt ... Converting dihedral_helix.txt ... Converting dihedral_hybrid.txt ... Converting dihedral_multi_harmonic.txt ... Converting dihedral_nharmonic.txt ... Converting dihedral_none.txt ... Converting dihedral_opls.txt ... Converting dihedral_quadratic.txt ... Converting dihedral_spherical.txt ... Converting dihedral_style.txt ... Converting dihedral_table.txt ... Converting dihedral_zero.txt ... Converting dihedrals.txt ... Converting dimension.txt ... Converting displace_atoms.txt ... Converting dump.txt ... Converting dump_cfg_uef.txt ... Converting dump_h5md.txt ... Converting dump_image.txt ... Converting dump_modify.txt ... Converting dump_molfile.txt ... Converting dump_netcdf.txt ... Converting dump_vtk.txt ... Converting echo.txt ... Converting fix.txt ... Converting fix_adapt.txt ... Converting fix_adapt_fep.txt ... Converting fix_addforce.txt ... Converting fix_addtorque.txt ... Converting fix_append_atoms.txt ... Converting fix_atc.txt ... Converting fix_atom_swap.txt ... Converting fix_ave_atom.txt ... Converting fix_ave_chunk.txt ... Converting fix_ave_correlate.txt ... Converting fix_ave_correlate_long.txt ... Converting fix_ave_histo.txt ... Converting fix_ave_time.txt ... Converting fix_aveforce.txt ... Converting fix_balance.txt ... Converting fix_bocs.txt ... Converting fix_bond_break.txt ... Converting fix_bond_create.txt ... Converting fix_bond_react.txt ... Converting fix_bond_swap.txt ... Converting fix_box_relax.txt ... Converting fix_cmap.txt ... Converting fix_colvars.txt ... Converting fix_controller.txt ... Converting fix_deform.txt ... Converting fix_deposit.txt ... Converting fix_dpd_energy.txt ... Converting fix_dpd_source.txt ... Converting fix_drag.txt ... Converting fix_drude.txt ... Converting fix_drude_transform.txt ... Converting fix_dt_reset.txt ... Converting fix_efield.txt ... Converting fix_ehex.txt ... Converting fix_enforce2d.txt ... Converting fix_eos_cv.txt ... Converting fix_eos_table.txt ... Converting fix_eos_table_rx.txt ... Converting fix_evaporate.txt ... Converting fix_external.txt ... Converting fix_filter_corotate.txt ... Converting fix_flow_gauss.txt ... Converting fix_freeze.txt ... Converting fix_gcmc.txt ... Converting fix_gld.txt ... Converting fix_gle.txt ... Converting fix_gravity.txt ... Converting fix_grem.txt ... Converting fix_halt.txt ... Converting fix_heat.txt ... Converting fix_imd.txt ... Converting fix_indent.txt ... Converting fix_ipi.txt ... Converting fix_langevin.txt ... Converting fix_langevin_drude.txt ... Converting fix_langevin_eff.txt ... Converting fix_latte.txt ... Converting fix_lb_fluid.txt ... Converting fix_lb_momentum.txt ... Converting fix_lb_pc.txt ... Converting fix_lb_rigid_pc_sphere.txt ... Converting fix_lb_viscous.txt ... Converting fix_lineforce.txt ... Converting fix_manifoldforce.txt ... Converting fix_meso.txt ... Converting fix_meso_stationary.txt ... Converting fix_modify.txt ... Converting fix_momentum.txt ... Converting fix_move.txt ... Converting fix_mscg.txt ... Converting fix_msst.txt ... Converting fix_mvv_dpd.txt ... Converting fix_neb.txt ... Converting fix_nh.txt ... Converting fix_nh_eff.txt ... Converting fix_nh_uef.txt ... Converting fix_nph_asphere.txt ... Converting fix_nph_body.txt ... Converting fix_nph_sphere.txt ... Converting fix_nphug.txt ... Converting fix_npt_asphere.txt ... Converting fix_npt_body.txt ... Converting fix_npt_sphere.txt ... Converting fix_nve.txt ... Converting fix_nve_asphere.txt ... Converting fix_nve_asphere_noforce.txt ... Converting fix_nve_body.txt ... Converting fix_nve_dot.txt ... Converting fix_nve_dotc_langevin.txt ... Converting fix_nve_eff.txt ... Converting fix_nve_limit.txt ... Converting fix_nve_line.txt ... Converting fix_nve_manifold_rattle.txt ... Converting fix_nve_noforce.txt ... Converting fix_nve_sphere.txt ... Converting fix_nve_tri.txt ... Converting fix_nvk.txt ... Converting fix_nvt_asphere.txt ... Converting fix_nvt_body.txt ... Converting fix_nvt_manifold_rattle.txt ... Converting fix_nvt_sllod.txt ... Converting fix_nvt_sllod_eff.txt ... Converting fix_nvt_sphere.txt ... Converting fix_oneway.txt ... Converting fix_orient.txt ... Converting fix_phonon.txt ... Converting fix_pimd.txt ... Converting fix_planeforce.txt ... Converting fix_poems.txt ... Converting fix_pour.txt ... Converting fix_press_berendsen.txt ... Converting fix_print.txt ... Converting fix_property_atom.txt ... Converting fix_python_invoke.txt ... Converting fix_python_move.txt ... Converting fix_qbmsst.txt ... Converting fix_qeq.txt ... Converting fix_qeq_comb.txt ... Converting fix_qeq_reax.txt ... Converting fix_qmmm.txt ... Converting fix_qtb.txt ... Converting fix_reax_bonds.txt ... Converting fix_reaxc_species.txt ... Converting fix_recenter.txt ... Converting fix_restrain.txt ... Converting fix_rhok.txt ... Converting fix_rigid.txt ... Converting fix_rx.txt ... Converting fix_saed_vtk.txt ... Converting fix_setforce.txt ... Converting fix_shake.txt ... Converting fix_shardlow.txt ... Converting fix_smd.txt ... Converting fix_smd_adjust_dt.txt ... Converting fix_smd_integrate_tlsph.txt ... Converting fix_smd_integrate_ulsph.txt ... Converting fix_smd_move_triangulated_surface.txt ... Converting fix_smd_setvel.txt ... Converting fix_smd_wall_surface.txt ... Converting fix_spring.txt ... Converting fix_spring_chunk.txt ... Converting fix_spring_rg.txt ... Converting fix_spring_self.txt ... Converting fix_srd.txt ... Converting fix_store_force.txt ... Converting fix_store_state.txt ... Converting fix_surface_global.txt ... Converting fix_temp_berendsen.txt ... Converting fix_temp_csvr.txt ... Converting fix_temp_rescale.txt ... Converting fix_temp_rescale_eff.txt ... Converting fix_tfmc.txt ... Converting fix_thermal_conductivity.txt ... Converting fix_ti_spring.txt ... Converting fix_tmd.txt ... Converting fix_ttm.txt ... Converting fix_tune_kspace.txt ... Converting fix_vector.txt ... Converting fix_viscosity.txt ... Converting fix_viscous.txt ... Converting fix_wall.txt ... Converting fix_wall_ees.txt ... Converting fix_wall_gran.txt ... Converting fix_wall_gran_region.txt ... Converting fix_wall_piston.txt ... Converting fix_wall_reflect.txt ... Converting fix_wall_region.txt ... Converting fix_wall_srd.txt ... Converting fixes.txt ... Converting group.txt ... Converting group2ndx.txt ... Converting if.txt ... Converting improper_class2.txt ... Converting improper_coeff.txt ... Converting improper_cossq.txt ... Converting improper_cvff.txt ... Converting improper_distance.txt ... Converting improper_fourier.txt ... Converting improper_harmonic.txt ... Converting improper_hybrid.txt ... Converting improper_inversion_harmonic.txt ... Converting improper_none.txt ... Converting improper_ring.txt ... Converting improper_style.txt ... Converting improper_umbrella.txt ... Converting improper_zero.txt ... Converting impropers.txt ... Converting include.txt ... Converting info.txt ... Converting jump.txt ... Converting kspace_modify.txt ... Converting kspace_style.txt ... Converting label.txt ... Converting lammps_commands.txt ... Converting lammps_commands_angle.txt ... Converting lammps_commands_atc.txt ... Converting lammps_commands_bond.txt ... Converting lammps_commands_compute.txt ... Converting lammps_commands_dihedral.txt ... Converting lammps_commands_fix.txt ... Converting lammps_commands_improper.txt ... Converting lammps_commands_kspace.txt ... Converting lammps_commands_pair.txt ... Converting lammps_support.txt ... Converting lammps_tutorials.txt ... Converting lattice.txt ... Converting log.txt ... Converting manifolds.txt ... Converting mass.txt ... Converting min_modify.txt ... Converting min_style.txt ... Converting minimize.txt ... Converting molecule.txt ... Converting neb.txt ... Converting neigh_modify.txt ... Converting neighbor.txt ... Converting newton.txt ... Converting next.txt ... Converting package.txt ... Converting pair_adp.txt ... Converting pair_agni.txt ... Converting pair_airebo.txt ... Converting pair_awpmd.txt ... Converting pair_beck.txt ... Converting pair_body.txt ... Converting pair_body_rounded_polygon.txt ... Converting pair_bop.txt ... Converting pair_born.txt ... Converting pair_brownian.txt ... Converting pair_buck.txt ... Converting pair_buck6d_coul_gauss.txt ... Converting pair_buck_long.txt ... Converting pair_charmm.txt ... Converting pair_class2.txt ... Converting pair_coeff.txt ... Converting pair_colloid.txt ... Converting pair_comb.txt ... Converting pair_coul.txt ... Converting pair_coul_diel.txt ... Converting pair_coul_shield.txt ... Converting pair_cs.txt ... Converting pair_dipole.txt ... Converting pair_dpd.txt ... Converting pair_dpd_fdt.txt ... Converting pair_dsmc.txt ... Converting pair_eam.txt ... Converting pair_edip.txt ... Converting pair_eff.txt ... Converting pair_eim.txt ... Converting pair_exp6_rx.txt ... Converting pair_extep.txt ... Converting pair_gauss.txt ... Converting pair_gayberne.txt ... Converting pair_gran.txt ... Converting pair_gromacs.txt ... Converting pair_gw.txt ... Converting pair_hbond_dreiding.txt ... Converting pair_hybrid.txt ... Converting pair_ilp_graphene_hbn.txt ... Converting pair_kim.txt ... Converting pair_kolmogorov_crespi_full.txt ... Converting pair_kolmogorov_crespi_z.txt ... Converting pair_lcbop.txt ... Converting pair_line_lj.txt ... Converting pair_list.txt ... Converting pair_lj.txt ... Converting pair_lj96.txt ... Converting pair_lj_cubic.txt ... Converting pair_lj_expand.txt ... Converting pair_lj_long.txt ... Converting pair_lj_smooth.txt ... Converting pair_lj_smooth_linear.txt ... Converting pair_lj_soft.txt ... Converting pair_lubricate.txt ... Converting pair_lubricateU.txt ... Converting pair_mdf.txt ... Converting pair_meam.txt ... Converting pair_meam_spline.txt ... Converting pair_meam_sw_spline.txt ... Converting pair_meso.txt ... Converting pair_mgpt.txt ... Converting pair_mie.txt ... Converting pair_modify.txt ... Converting pair_momb.txt ... Converting pair_morse.txt ... Converting pair_multi_lucy.txt ... Converting pair_multi_lucy_rx.txt ... Converting pair_nb3b_harmonic.txt ... Converting pair_nm.txt ... Converting pair_none.txt ... Converting pair_oxdna.txt ... Converting pair_oxdna2.txt ... Converting pair_peri.txt ... Converting pair_polymorphic.txt ... Converting pair_python.txt ... Converting pair_quip.txt ... Converting pair_reax.txt ... Converting pair_reaxc.txt ... Converting pair_resquared.txt ... Converting pair_sdk.txt ... Converting pair_smd_hertz.txt ... Converting pair_smd_tlsph.txt ... Converting pair_smd_triangulated_surface.txt ... Converting pair_smd_ulsph.txt ... Converting pair_smtbq.txt ... Converting pair_snap.txt ... Converting pair_soft.txt ... Converting pair_sph_heatconduction.txt ... Converting pair_sph_idealgas.txt ... Converting pair_sph_lj.txt ... Converting pair_sph_rhosum.txt ... Converting pair_sph_taitwater.txt ... Converting pair_sph_taitwater_morris.txt ... Converting pair_srp.txt ... Converting pair_style.txt ... Converting pair_sw.txt ... Converting pair_table.txt ... Converting pair_table_rx.txt ... Converting pair_tersoff.txt ... Converting pair_tersoff_mod.txt ... Converting pair_tersoff_zbl.txt ... Converting pair_thole.txt ... Converting pair_tri_lj.txt ... Converting pair_ufm.txt ... Converting pair_vashishta.txt ... Converting pair_write.txt ... Converting pair_yukawa.txt ... Converting pair_yukawa_colloid.txt ... Converting pair_zbl.txt ... Converting pair_zero.txt ... Converting pairs.txt ... Converting partition.txt ... Converting prd.txt ... Converting print.txt ... Converting processors.txt ... Converting python.txt ... Converting quit.txt ... Converting read_data.txt ... Converting read_dump.txt ... Converting read_restart.txt ... Converting region.txt ... Converting replicate.txt ... Converting rerun.txt ... Converting reset_ids.txt ... Converting reset_timestep.txt ... Converting restart.txt ... Converting run.txt ... Converting run_style.txt ... Converting set.txt ... Converting shell.txt ... Converting special_bonds.txt ... Converting suffix.txt ... Converting tad.txt ... Converting temper.txt ... Converting temper_grem.txt ... Converting temper_npt.txt ... Converting thermo.txt ... Converting thermo_modify.txt ... Converting thermo_style.txt ... Converting timer.txt ... Converting timestep.txt ... Converting tutorial_bash_on_windows.txt ... Converting tutorial_drude.txt ... Converting tutorial_github.txt ... Converting tutorial_pylammps.txt ... Converting tutorials.txt ... Converting uncompute.txt ... Converting undump.txt ... Converting unfix.txt ... Converting units.txt ... Converting variable.txt ... Converting velocity.txt ... Converting write_coeff.txt ... Converting write_data.txt ... Converting write_dump.txt ... Converting write_restart.txt ... make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/doc' /bin/bash: python: command not found /bin/bash: python: command not found /bin/bash: python: command not found /bin/bash: python: command not found /bin/bash: python: command not found /bin/bash: python: command not found /bin/bash: python: command not found /bin/bash: python: command not found /bin/bash: python: command not found /bin/bash: python: command not found /bin/bash: python: command not found Converting Manual.txt ... Converting Section_accelerate.txt ... Converting Section_commands.txt ... Converting Section_errors.txt ... Converting Section_example.txt ... Converting Section_history.txt ... Converting Section_howto.txt ... Converting Section_intro.txt ... Converting Section_modify.txt ... Converting Section_packages.txt ... Converting Section_perf.txt ... Converting Section_python.txt ... Converting Section_start.txt ... Converting Section_tools.txt ... Converting accelerate_gpu.txt ... Converting accelerate_intel.txt ... Converting accelerate_kokkos.txt ... Converting accelerate_omp.txt ... Converting accelerate_opt.txt ... Converting angle_charmm.txt ... Converting angle_class2.txt ... Converting angle_coeff.txt ... Converting angle_cosine.txt ... Converting angle_cosine_buck6d.txt ... Converting angle_cosine_delta.txt ... Converting angle_cosine_periodic.txt ... Converting angle_cosine_shift.txt ... Converting angle_cosine_shift_exp.txt ... Converting angle_cosine_squared.txt ... Converting angle_dipole.txt ... Converting angle_fourier.txt ... Converting angle_fourier_simple.txt ... Converting angle_harmonic.txt ... Converting angle_hybrid.txt ... Converting angle_none.txt ... Converting angle_quartic.txt ... Converting angle_sdk.txt ... Converting angle_style.txt ... Converting angle_table.txt ... Converting angle_zero.txt ... Converting angles.txt ... Converting atom_modify.txt ... Converting atom_style.txt ... Converting balance.txt ... Converting body.txt ... Converting bond_class2.txt ... Converting bond_coeff.txt ... Converting bond_fene.txt ... Converting bond_fene_expand.txt ... Converting bond_gromos.txt ... Converting bond_harmonic.txt ... Converting bond_harmonic_shift.txt ... Converting bond_harmonic_shift_cut.txt ... Converting bond_hybrid.txt ... Converting bond_morse.txt ... Converting bond_none.txt ... Converting bond_nonlinear.txt ... Converting bond_oxdna.txt ... Converting bond_quartic.txt ... Converting bond_style.txt ... Converting bond_table.txt ... Converting bond_write.txt ... Converting bond_zero.txt ... Converting bonds.txt ... Converting boundary.txt ... Converting box.txt ... Converting change_box.txt ... Converting clear.txt ... Converting comm_modify.txt ... Converting comm_style.txt ... Converting commands.txt ... Converting compute.txt ... Converting compute_ackland_atom.txt ... Converting compute_angle.txt ... Converting compute_angle_local.txt ... Converting compute_angmom_chunk.txt ... Converting compute_basal_atom.txt ... Converting compute_body_local.txt ... Converting compute_bond.txt ... Converting compute_bond_local.txt ... Converting compute_centro_atom.txt ... Converting compute_chunk_atom.txt ... Converting compute_cluster_atom.txt ... Converting compute_cna_atom.txt ... Converting compute_cnp_atom.txt ... Converting compute_com.txt ... Converting compute_com_chunk.txt ... Converting compute_contact_atom.txt ... Converting compute_coord_atom.txt ... Converting compute_damage_atom.txt ... Converting compute_dihedral.txt ... Converting compute_dihedral_local.txt ... Converting compute_dilatation_atom.txt ... Converting compute_dipole_chunk.txt ... Converting compute_displace_atom.txt ... Converting compute_dpd.txt ... Converting compute_dpd_atom.txt ... Converting compute_edpd_temp_atom.txt ... Converting compute_erotate_asphere.txt ... Converting compute_erotate_rigid.txt ... Converting compute_erotate_sphere.txt ... Converting compute_erotate_sphere_atom.txt ... Converting compute_event_displace.txt ... Converting compute_fep.txt ... Converting compute_global_atom.txt ... Converting compute_group_group.txt ... Converting compute_gyration.txt ... Converting compute_gyration_chunk.txt ... Converting compute_heat_flux.txt ... Converting compute_hexorder_atom.txt ... Converting compute_improper.txt ... Converting compute_improper_local.txt ... Converting compute_inertia_chunk.txt ... Converting compute_ke.txt ... Converting compute_ke_atom.txt ... Converting compute_ke_atom_eff.txt ... Converting compute_ke_eff.txt ... Converting compute_ke_rigid.txt ... Converting compute_meso_e_atom.txt ... Converting compute_meso_rho_atom.txt ... Converting compute_meso_t_atom.txt ... Converting compute_modify.txt ... Converting compute_msd.txt ... Converting compute_msd_chunk.txt ... Converting compute_msd_nongauss.txt ... Converting compute_omega_chunk.txt ... Converting compute_orientorder_atom.txt ... Converting compute_pair.txt ... Converting compute_pair_local.txt ... Converting compute_pe.txt ... Converting compute_pe_atom.txt ... Converting compute_plasticity_atom.txt ... Converting compute_pressure.txt ... Converting compute_pressure_uef.txt ... Converting compute_property_atom.txt ... Converting compute_property_chunk.txt ... Converting compute_property_local.txt ... Converting compute_rdf.txt ... Converting compute_reduce.txt ... Converting compute_rigid_local.txt ... Converting compute_saed.txt ... Converting compute_slice.txt ... Converting compute_smd_contact_radius.txt ... Converting compute_smd_damage.txt ... Converting compute_smd_hourglass_error.txt ... Converting compute_smd_internal_energy.txt ... Converting compute_smd_plastic_strain.txt ... Converting compute_smd_plastic_strain_rate.txt ... Converting compute_smd_rho.txt ... Converting compute_smd_tlsph_defgrad.txt ... Converting compute_smd_tlsph_dt.txt ... Converting compute_smd_tlsph_num_neighs.txt ... Converting compute_smd_tlsph_shape.txt ... Converting compute_smd_tlsph_strain.txt ... Converting compute_smd_tlsph_strain_rate.txt ... Converting compute_smd_tlsph_stress.txt ... Converting compute_smd_triangle_mesh_vertices.txt ... Converting compute_smd_ulsph_num_neighs.txt ... Converting compute_smd_ulsph_strain.txt ... Converting compute_smd_ulsph_strain_rate.txt ... Converting compute_smd_ulsph_stress.txt ... Converting compute_smd_vol.txt ... Converting compute_sna_atom.txt ... Converting compute_stress_atom.txt ... Converting compute_tally.txt ... Converting compute_tdpd_cc_atom.txt ... Converting compute_temp.txt ... Converting compute_temp_asphere.txt ... Converting compute_temp_body.txt ... Converting compute_temp_chunk.txt ... Converting compute_temp_com.txt ... Converting compute_temp_cs.txt ... Converting compute_temp_deform.txt ... Converting compute_temp_deform_eff.txt ... Converting compute_temp_drude.txt ... Converting compute_temp_eff.txt ... Converting compute_temp_partial.txt ... Converting compute_temp_profile.txt ... Converting compute_temp_ramp.txt ... Converting compute_temp_region.txt ... Converting compute_temp_region_eff.txt ... Converting compute_temp_rotate.txt ... Converting compute_temp_sphere.txt ... Converting compute_temp_uef.txt ... Converting compute_ti.txt ... Converting compute_torque_chunk.txt ... Converting compute_vacf.txt ... Converting compute_vcm_chunk.txt ... Converting compute_voronoi_atom.txt ... Converting compute_xrd.txt ... Converting computes.txt ... Converting create_atoms.txt ... Converting create_bonds.txt ... Converting create_box.txt ... Converting delete_atoms.txt ... Converting delete_bonds.txt ... Converting dielectric.txt ... Converting dihedral_charmm.txt ... Converting dihedral_class2.txt ... Converting dihedral_coeff.txt ... Converting dihedral_cosine_shift_exp.txt ... Converting dihedral_fourier.txt ... Converting dihedral_harmonic.txt ... Converting dihedral_helix.txt ... Converting dihedral_hybrid.txt ... Converting dihedral_multi_harmonic.txt ... Converting dihedral_nharmonic.txt ... Converting dihedral_none.txt ... Converting dihedral_opls.txt ... Converting dihedral_quadratic.txt ... Converting dihedral_spherical.txt ... Converting dihedral_style.txt ... Converting dihedral_table.txt ... Converting dihedral_zero.txt ... Converting dihedrals.txt ... Converting dimension.txt ... Converting displace_atoms.txt ... Converting dump.txt ... Converting dump_cfg_uef.txt ... Converting dump_h5md.txt ... Converting dump_image.txt ... Converting dump_modify.txt ... Converting dump_molfile.txt ... Converting dump_netcdf.txt ... Converting dump_vtk.txt ... Converting echo.txt ... Converting fix.txt ... Converting fix_adapt.txt ... Converting fix_adapt_fep.txt ... Converting fix_addforce.txt ... Converting fix_addtorque.txt ... Converting fix_append_atoms.txt ... Converting fix_atc.txt ... Converting fix_atom_swap.txt ... Converting fix_ave_atom.txt ... Converting fix_ave_chunk.txt ... Converting fix_ave_correlate.txt ... Converting fix_ave_correlate_long.txt ... Converting fix_ave_histo.txt ... Converting fix_ave_time.txt ... Converting fix_aveforce.txt ... Converting fix_balance.txt ... Converting fix_bocs.txt ... Converting fix_bond_break.txt ... Converting fix_bond_create.txt ... Converting fix_bond_react.txt ... Converting fix_bond_swap.txt ... Converting fix_box_relax.txt ... Converting fix_cmap.txt ... Converting fix_colvars.txt ... Converting fix_controller.txt ... Converting fix_deform.txt ... Converting fix_deposit.txt ... Converting fix_dpd_energy.txt ... Converting fix_dpd_source.txt ... Converting fix_drag.txt ... Converting fix_drude.txt ... Converting fix_drude_transform.txt ... Converting fix_dt_reset.txt ... Converting fix_efield.txt ... Converting fix_ehex.txt ... Converting fix_enforce2d.txt ... Converting fix_eos_cv.txt ... Converting fix_eos_table.txt ... Converting fix_eos_table_rx.txt ... Converting fix_evaporate.txt ... Converting fix_external.txt ... Converting fix_filter_corotate.txt ... Converting fix_flow_gauss.txt ... Converting fix_freeze.txt ... Converting fix_gcmc.txt ... Converting fix_gld.txt ... Converting fix_gle.txt ... Converting fix_gravity.txt ... Converting fix_grem.txt ... Converting fix_halt.txt ... Converting fix_heat.txt ... Converting fix_imd.txt ... Converting fix_indent.txt ... Converting fix_ipi.txt ... Converting fix_langevin.txt ... Converting fix_langevin_drude.txt ... Converting fix_langevin_eff.txt ... Converting fix_latte.txt ... Converting fix_lb_fluid.txt ... Converting fix_lb_momentum.txt ... Converting fix_lb_pc.txt ... Converting fix_lb_rigid_pc_sphere.txt ... Converting fix_lb_viscous.txt ... Converting fix_lineforce.txt ... Converting fix_manifoldforce.txt ... Converting fix_meso.txt ... Converting fix_meso_stationary.txt ... Converting fix_modify.txt ... Converting fix_momentum.txt ... Converting fix_move.txt ... Converting fix_mscg.txt ... Converting fix_msst.txt ... Converting fix_mvv_dpd.txt ... Converting fix_neb.txt ... Converting fix_nh.txt ... Converting fix_nh_eff.txt ... Converting fix_nh_uef.txt ... Converting fix_nph_asphere.txt ... Converting fix_nph_body.txt ... Converting fix_nph_sphere.txt ... Converting fix_nphug.txt ... Converting fix_npt_asphere.txt ... Converting fix_npt_body.txt ... Converting fix_npt_sphere.txt ... Converting fix_nve.txt ... Converting fix_nve_asphere.txt ... Converting fix_nve_asphere_noforce.txt ... Converting fix_nve_body.txt ... Converting fix_nve_dot.txt ... Converting fix_nve_dotc_langevin.txt ... Converting fix_nve_eff.txt ... Converting fix_nve_limit.txt ... Converting fix_nve_line.txt ... Converting fix_nve_manifold_rattle.txt ... Converting fix_nve_noforce.txt ... Converting fix_nve_sphere.txt ... Converting fix_nve_tri.txt ... Converting fix_nvk.txt ... Converting fix_nvt_asphere.txt ... Converting fix_nvt_body.txt ... Converting fix_nvt_manifold_rattle.txt ... Converting fix_nvt_sllod.txt ... Converting fix_nvt_sllod_eff.txt ... Converting fix_nvt_sphere.txt ... Converting fix_oneway.txt ... Converting fix_orient.txt ... Converting fix_phonon.txt ... Converting fix_pimd.txt ... Converting fix_planeforce.txt ... Converting fix_poems.txt ... Converting fix_pour.txt ... Converting fix_press_berendsen.txt ... Converting fix_print.txt ... Converting fix_property_atom.txt ... Converting fix_python_invoke.txt ... Converting fix_python_move.txt ... Converting fix_qbmsst.txt ... Converting fix_qeq.txt ... Converting fix_qeq_comb.txt ... Converting fix_qeq_reax.txt ... Converting fix_qmmm.txt ... Converting fix_qtb.txt ... Converting fix_reax_bonds.txt ... Converting fix_reaxc_species.txt ... Converting fix_recenter.txt ... Converting fix_restrain.txt ... Converting fix_rhok.txt ... Converting fix_rigid.txt ... Converting fix_rx.txt ... Converting fix_saed_vtk.txt ... Converting fix_setforce.txt ... Converting fix_shake.txt ... Converting fix_shardlow.txt ... Converting fix_smd.txt ... Converting fix_smd_adjust_dt.txt ... Converting fix_smd_integrate_tlsph.txt ... Converting fix_smd_integrate_ulsph.txt ... Converting fix_smd_move_triangulated_surface.txt ... Converting fix_smd_setvel.txt ... Converting fix_smd_wall_surface.txt ... Converting fix_spring.txt ... Converting fix_spring_chunk.txt ... Converting fix_spring_rg.txt ... Converting fix_spring_self.txt ... Converting fix_srd.txt ... Converting fix_store_force.txt ... Converting fix_store_state.txt ... Converting fix_surface_global.txt ... Converting fix_temp_berendsen.txt ... Converting fix_temp_csvr.txt ... Converting fix_temp_rescale.txt ... Converting fix_temp_rescale_eff.txt ... Converting fix_tfmc.txt ... Converting fix_thermal_conductivity.txt ... Converting fix_ti_spring.txt ... Converting fix_tmd.txt ... Converting fix_ttm.txt ... Converting fix_tune_kspace.txt ... Converting fix_vector.txt ... Converting fix_viscosity.txt ... Converting fix_viscous.txt ... Converting fix_wall.txt ... Converting fix_wall_ees.txt ... Converting fix_wall_gran.txt ... Converting fix_wall_gran_region.txt ... Converting fix_wall_piston.txt ... Converting fix_wall_reflect.txt ... Converting fix_wall_region.txt ... Converting fix_wall_srd.txt ... Converting fixes.txt ... Converting group.txt ... Converting group2ndx.txt ... Converting if.txt ... Converting improper_class2.txt ... Converting improper_coeff.txt ... Converting improper_cossq.txt ... Converting improper_cvff.txt ... Converting improper_distance.txt ... Converting improper_fourier.txt ... Converting improper_harmonic.txt ... Converting improper_hybrid.txt ... Converting improper_inversion_harmonic.txt ... Converting improper_none.txt ... Converting improper_ring.txt ... Converting improper_style.txt ... Converting improper_umbrella.txt ... Converting improper_zero.txt ... Converting impropers.txt ... Converting include.txt ... Converting info.txt ... Converting jump.txt ... Converting kspace_modify.txt ... Converting kspace_style.txt ... Converting label.txt ... Converting lammps_commands.txt ... Converting lammps_commands_angle.txt ... Converting lammps_commands_atc.txt ... Converting lammps_commands_bond.txt ... Converting lammps_commands_compute.txt ... Converting lammps_commands_dihedral.txt ... Converting lammps_commands_fix.txt ... Converting lammps_commands_improper.txt ... Converting lammps_commands_kspace.txt ... Converting lammps_commands_pair.txt ... Converting lammps_support.txt ... Converting lammps_tutorials.txt ... Converting lattice.txt ... Converting log.txt ... Converting manifolds.txt ... Converting mass.txt ... Converting min_modify.txt ... Converting min_style.txt ... Converting minimize.txt ... Converting molecule.txt ... Converting neb.txt ... Converting neigh_modify.txt ... Converting neighbor.txt ... Converting newton.txt ... Converting next.txt ... Converting package.txt ... Converting pair_adp.txt ... Converting pair_agni.txt ... Converting pair_airebo.txt ... Converting pair_awpmd.txt ... Converting pair_beck.txt ... Converting pair_body.txt ... Converting pair_body_rounded_polygon.txt ... Converting pair_bop.txt ... Converting pair_born.txt ... Converting pair_brownian.txt ... Converting pair_buck.txt ... Converting pair_buck6d_coul_gauss.txt ... Converting pair_buck_long.txt ... Converting pair_charmm.txt ... Converting pair_class2.txt ... Converting pair_coeff.txt ... Converting pair_colloid.txt ... Converting pair_comb.txt ... Converting pair_coul.txt ... Converting pair_coul_diel.txt ... Converting pair_coul_shield.txt ... Converting pair_cs.txt ... Converting pair_dipole.txt ... Converting pair_dpd.txt ... Converting pair_dpd_fdt.txt ... Converting pair_dsmc.txt ... Converting pair_eam.txt ... Converting pair_edip.txt ... Converting pair_eff.txt ... Converting pair_eim.txt ... Converting pair_exp6_rx.txt ... Converting pair_extep.txt ... Converting pair_gauss.txt ... Converting pair_gayberne.txt ... Converting pair_gran.txt ... Converting pair_gromacs.txt ... Converting pair_gw.txt ... Converting pair_hbond_dreiding.txt ... Converting pair_hybrid.txt ... Converting pair_ilp_graphene_hbn.txt ... Converting pair_kim.txt ... Converting pair_kolmogorov_crespi_full.txt ... Converting pair_kolmogorov_crespi_z.txt ... Converting pair_lcbop.txt ... Converting pair_line_lj.txt ... Converting pair_list.txt ... Converting pair_lj.txt ... Converting pair_lj96.txt ... Converting pair_lj_cubic.txt ... Converting pair_lj_expand.txt ... Converting pair_lj_long.txt ... Converting pair_lj_smooth.txt ... Converting pair_lj_smooth_linear.txt ... Converting pair_lj_soft.txt ... Converting pair_lubricate.txt ... Converting pair_lubricateU.txt ... Converting pair_mdf.txt ... Converting pair_meam.txt ... Converting pair_meam_spline.txt ... Converting pair_meam_sw_spline.txt ... Converting pair_meso.txt ... Converting pair_mgpt.txt ... Converting pair_mie.txt ... Converting pair_modify.txt ... Converting pair_momb.txt ... Converting pair_morse.txt ... Converting pair_multi_lucy.txt ... Converting pair_multi_lucy_rx.txt ... Converting pair_nb3b_harmonic.txt ... Converting pair_nm.txt ... Converting pair_none.txt ... Converting pair_oxdna.txt ... Converting pair_oxdna2.txt ... Converting pair_peri.txt ... Converting pair_polymorphic.txt ... Converting pair_python.txt ... Converting pair_quip.txt ... Converting pair_reax.txt ... Converting pair_reaxc.txt ... Converting pair_resquared.txt ... Converting pair_sdk.txt ... Converting pair_smd_hertz.txt ... Converting pair_smd_tlsph.txt ... Converting pair_smd_triangulated_surface.txt ... Converting pair_smd_ulsph.txt ... Converting pair_smtbq.txt ... Converting pair_snap.txt ... Converting pair_soft.txt ... Converting pair_sph_heatconduction.txt ... Converting pair_sph_idealgas.txt ... Converting pair_sph_lj.txt ... Converting pair_sph_rhosum.txt ... Converting pair_sph_taitwater.txt ... Converting pair_sph_taitwater_morris.txt ... Converting pair_srp.txt ... Converting pair_style.txt ... Converting pair_sw.txt ... Converting pair_table.txt ... Converting pair_table_rx.txt ... Converting pair_tersoff.txt ... Converting pair_tersoff_mod.txt ... Converting pair_tersoff_zbl.txt ... Converting pair_thole.txt ... Converting pair_tri_lj.txt ... Converting pair_ufm.txt ... Converting pair_vashishta.txt ... Converting pair_write.txt ... Converting pair_yukawa.txt ... Converting pair_yukawa_colloid.txt ... Converting pair_zbl.txt ... Converting pair_zero.txt ... Converting pairs.txt ... Converting partition.txt ... Converting prd.txt ... Converting print.txt ... Converting processors.txt ... Converting python.txt ... Converting quit.txt ... Converting read_data.txt ... Converting read_dump.txt ... Converting read_restart.txt ... Converting region.txt ... Converting replicate.txt ... Converting rerun.txt ... Converting reset_ids.txt ... Converting reset_timestep.txt ... Converting restart.txt ... Converting run.txt ... Converting run_style.txt ... Converting set.txt ... Converting shell.txt ... Converting special_bonds.txt ... Converting suffix.txt ... Converting tad.txt ... Converting temper.txt ... Converting temper_grem.txt ... Converting temper_npt.txt ... Converting thermo.txt ... Converting thermo_modify.txt ... Converting thermo_style.txt ... Converting timer.txt ... Converting timestep.txt ... Converting tutorial_bash_on_windows.txt ... Converting tutorial_drude.txt ... Converting tutorial_github.txt ... Converting tutorial_pylammps.txt ... Converting tutorials.txt ... Converting uncompute.txt ... Converting undump.txt ... Converting unfix.txt ... Converting units.txt ... Converting variable.txt ... Converting velocity.txt ... Converting write_coeff.txt ... Converting write_data.txt ... Converting write_dump.txt ... Converting write_restart.txt ... PAGES: 2244 BYTES: 15427301 doc file angles.html missing in src/lammps.book doc file dihedrals.html missing in src/lammps.book doc file fixes.html missing in src/lammps.book doc file impropers.html missing in src/lammps.book doc file pairs.html missing in src/lammps.book This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./developer.tex LaTeX2e <2018-04-01> patch level 4 Babel <3.20> and hyphenation patterns for 3 language(s) loaded. (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) No file developer.aux. (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvdefinekeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty))) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty)))) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) No file developer.toc. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] LaTeX Warning: Reference `fig:classes' on page 3 undefined on input line 58. LaTeX Warning: Reference `fig:classes' on page 3 undefined on input line 78. LaTeX Warning: Reference `fig:classes' on page 3 undefined on input line 85. Overfull \hbox (18.02841pt too wide) in paragraph at lines 95--107 \OT1/cmr/m/n/10 ment spe-cific com-mands in the in-put script that can be in-vo ked be-fore/after/between Overfull \hbox (21.68127pt too wide) in paragraph at lines 95--107 \OT1/cmr/m/n/10 PAIR[]CLASS, BOND[]CLASS, RE-GION[]CLASS, FIX[]CLASS, COM-PUTE[ ]CLASS, LaTeX Warning: Reference `fig:classes' on page 3 undefined on input line 116. (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) [3] [4 <./classes.pdf> ] Overfull \hbox (1.52841pt too wide) in paragraph at lines 163--168 []\OT1/cmr/m/n/10 The Comm class per-forms in-ter-pro-ces-sor com-mu-ni-ca-tion , typ-i-cally of ghost [5] LaTeX Warning: Reference `fig:verlet' on page 6 undefined on input line 264. LaTeX Warning: Reference `fig:verlet' on page 6 undefined on input line 331. Overfull \hbox (7.86919pt too wide) in paragraph at lines 323--338 []\OT1/cmr/m/n/10 At var-i-ous points of the timestep, fixes are in-voked, e.g. fix$\OMS/cmsy/m/n/10 !$\OT1/cmr/m/n/10 initial[]integrate(). [6] LaTeX Warning: Reference `fig:verlet' on page 7 undefined on input line 343. [7] LaTeX Warning: Reference `fig:verlet' on page 8 undefined on input line 421. [8] [9] [10] Overfull \hbox (1.49698pt too wide) in paragraph at lines 566--566 [] \OT1/cmtt/m/n/10 for (int particleInd = 0; particleInd < nlocal; ++particle Ind) {[] Overfull \hbox (43.49661pt too wide) in paragraph at lines 566--566 [] \OT1/cmtt/m/n/10 MPI_Allreduce(localAvgVel, globalAvgVel, 4, MPI_DOUBLE, MP I_SUM, world);[] [11] Overfull \hbox (3.8593pt too wide) in paragraph at lines 612--615 [][][]\OT1/cmtt/m/n/10 void copy_arrays(int i, int j, int delflag) []\OT1/cmr/m /n/10 - copy i-th per-particle Overfull \hbox (10.76607pt too wide) in paragraph at lines 638--640 [][][]\OT1/cmtt/m/n/10 memory->create(this->x, atom->nmax, 3, "FixSavePos:x");[ ]\OT1/cmr/m/n/10 . Free mem- [12] [13] [14] (./developer.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on developer.pdf (14 pages, 128089 bytes). Transcript written on developer.log. This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./developer.tex LaTeX2e <2018-04-01> patch level 4 Babel <3.20> and hyphenation patterns for 3 language(s) loaded. (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (./developer.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvdefinekeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty))) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty)))) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (./developer.toc) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] Overfull \hbox (18.02841pt too wide) in paragraph at lines 95--107 \OT1/cmr/m/n/10 ment spe-cific com-mands in the in-put script that can be in-vo ked be-fore/after/between Overfull \hbox (21.68127pt too wide) in paragraph at lines 95--107 \OT1/cmr/m/n/10 PAIR[]CLASS, BOND[]CLASS, RE-GION[]CLASS, FIX[]CLASS, COM-PUTE[ ]CLASS, (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) [3] [4 <./classes.pdf> ] Overfull \hbox (1.52841pt too wide) in paragraph at lines 163--168 []\OT1/cmr/m/n/10 The Comm class per-forms in-ter-pro-ces-sor com-mu-ni-ca-tion , typ-i-cally of ghost [5] Overfull \hbox (7.86919pt too wide) in paragraph at lines 323--338 []\OT1/cmr/m/n/10 At var-i-ous points of the timestep, fixes are in-voked, e.g. fix$\OMS/cmsy/m/n/10 !$\OT1/cmr/m/n/10 initial[]integrate(). [6] [7] [8] [9] [10] Overfull \hbox (1.49698pt too wide) in paragraph at lines 566--566 [] \OT1/cmtt/m/n/10 for (int particleInd = 0; particleInd < nlocal; ++particle Ind) {[] Overfull \hbox (43.49661pt too wide) in paragraph at lines 566--566 [] \OT1/cmtt/m/n/10 MPI_Allreduce(localAvgVel, globalAvgVel, 4, MPI_DOUBLE, MP I_SUM, world);[] [11] Overfull \hbox (3.8593pt too wide) in paragraph at lines 612--615 [][][]\OT1/cmtt/m/n/10 void copy_arrays(int i, int j, int delflag) []\OT1/cmr/m /n/10 - copy i-th per-particle Overfull \hbox (10.76607pt too wide) in paragraph at lines 638--640 [][][]\OT1/cmtt/m/n/10 memory->create(this->x, atom->nmax, 3, "FixSavePos:x");[ ]\OT1/cmr/m/n/10 . Free mem- [12] [13] [14] (./developer.aux) ) (see the transcript file for additional information) Output written on developer.pdf (14 pages, 134126 bytes). Transcript written on developer.log. make[2]: Leaving directory '/<>/doc' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/<>' mkdir test; cp examples/crack/* test/ cd test; ./../src/lammps < in.crack [lgw01-amd64-003:21085] [[642,0],0] ORTE_ERROR_LOG: Data unpack would read past end of buffer in file util/show_help.c at line 501 LAMMPS (20 Apr 2018) OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (../comm.cpp:90) using 1 OpenMP thread(s) per MPI task Lattice spacing in x,y,z = 1.11428 1.92998 1.11428 Created orthogonal box = (0 0 -0.278569) to (111.428 77.1994 0.278569) 1 by 1 by 1 MPI processor grid Created 8141 atoms Time spent = 0.00118556 secs 302 atoms in group lower 302 atoms in group upper 604 atoms in group boundary 7537 atoms in group mobile 841 atoms in group leftupper 841 atoms in group leftlower Setting atom values ... 841 settings made for type Setting atom values ... 841 settings made for type Setting atom values ... 302 settings made for type Setting atom values ... 302 settings made for type WARNING: Temperature for thermo pressure is not for group all (../thermo.cpp:489) Neighbor list info ... update every 1 steps, delay 5 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 2.8 ghost atom cutoff = 2.8 binsize = 1.4, bins = 80 56 1 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair lj/cut, perpetual attributes: half, newton on pair build: half/bin/atomonly/newton stencil: half/bin/2d/newton bin: standard Setting up Verlet run ... Unit style : lj Current step : 0 Time step : 0.003 Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes Step Temp E_pair E_mol TotEng Press Volume 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 Loop time of 5.6542 on 1 procs for 5000 steps with 8141 atoms Performance: 229209.995 tau/day, 884.298 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 4.8544 | 4.8544 | 4.8544 | 0.0 | 85.86 Neigh | 0.20818 | 0.20818 | 0.20818 | 0.0 | 3.68 Comm | 0.0043082 | 0.0043082 | 0.0043082 | 0.0 | 0.08 Output | 0.0011178 | 0.0011178 | 0.0011178 | 0.0 | 0.02 Modify | 0.42056 | 0.42056 | 0.42056 | 0.0 | 7.44 Other | | 0.1656 | | | 2.93 Nlocal: 8141 ave 8141 max 8141 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 71389 ave 71389 max 71389 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 71389 Ave neighs/atom = 8.76907 Neighbor list builds = 100 Dangerous builds = 0 Total wall time: 0:00:05 rm -rf test mkdir test; cp examples/crack/* test/ cd test; mpirun -np 2 --oversubscribe ./../src/lammps < in.crack -------------------------------------------------------------------------- [[694,1],0]: A high-performance Open MPI point-to-point messaging module was unable to find any relevant network interfaces: Module: OpenFabrics (openib) Host: lgw01-amd64-003 Another transport will be used instead, although this may result in lower performance. NOTE: You can disable this warning by setting the MCA parameter btl_base_warn_component_unused to 0. -------------------------------------------------------------------------- LAMMPS (20 Apr 2018) OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (../comm.cpp:90) using 1 OpenMP thread(s) per MPI task Lattice spacing in x,y,z = 1.11428 1.92998 1.11428 Created orthogonal box = (0 0 -0.278569) to (111.428 77.1994 0.278569) 2 by 1 by 1 MPI processor grid Created 8141 atoms Time spent = 0.00100351 secs 302 atoms in group lower 302 atoms in group upper 604 atoms in group boundary 7537 atoms in group mobile 841 atoms in group leftupper 841 atoms in group leftlower Setting atom values ... 841 settings made for type Setting atom values ... 841 settings made for type Setting atom values ... 302 settings made for type Setting atom values ... 302 settings made for type WARNING: Temperature for thermo pressure is not for group all (../thermo.cpp:489) Neighbor list info ... update every 1 steps, delay 5 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 2.8 ghost atom cutoff = 2.8 binsize = 1.4, bins = 80 56 1 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair lj/cut, perpetual attributes: half, newton on pair build: half/bin/atomonly/newton stencil: half/bin/2d/newton bin: standard Setting up Verlet run ... Unit style : lj Current step : 0 Time step : 0.003 Per MPI rank memory allocation (min/avg/max) = 3.096 | 3.096 | 3.096 Mbytes Step Temp E_pair E_mol TotEng Press Volume 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 Loop time of 3.04247 on 2 procs for 5000 steps with 8141 atoms Performance: 425969.519 tau/day, 1643.401 timesteps/s 99.2% CPU use with 2 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 2.4234 | 2.4355 | 2.4476 | 0.8 | 80.05 Neigh | 0.10786 | 0.11403 | 0.1202 | 1.8 | 3.75 Comm | 0.168 | 0.17364 | 0.17928 | 1.4 | 5.71 Output | 0.00093503 | 0.0011961 | 0.0014572 | 0.8 | 0.04 Modify | 0.20811 | 0.21218 | 0.21626 | 0.9 | 6.97 Other | | 0.1059 | | | 3.48 Nlocal: 4070.5 ave 4085 max 4056 min Histogram: 1 0 0 0 0 0 0 0 0 1 Nghost: 207 ave 208 max 206 min Histogram: 1 0 0 0 0 0 0 0 0 1 Neighs: 35700 ave 35927 max 35473 min Histogram: 1 0 0 0 0 0 0 0 0 1 Total # of neighbors = 71400 Ave neighs/atom = 8.77042 Neighbor list builds = 106 Dangerous builds = 0 Total wall time: 0:00:03 [lgw01-amd64-003:21097] 1 more process has sent help message help-mpi-btl-base.txt / btl:no-nics [lgw01-amd64-003:21097] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages rm -rf test make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms-indep make[1]: Entering directory '/<>' dh_fixperms -i find /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ -type f -print -exec chmod 644 {} \; /<>/debian/lammps-doc/usr/share/doc/lammps/examples/mscg/output_9Jan17/1_1.dat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/mscg/output_9Jan17/sol_info.out /<>/debian/lammps-doc/usr/share/doc/lammps/examples/mscg/output_9Jan17/rmin_b.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/mscg/output_9Jan17/1_1.table /<>/debian/lammps-doc/usr/share/doc/lammps/examples/mscg/output_9Jan17/rmin.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/mscg/output_9Jan17/x.out /<>/debian/lammps-doc/usr/share/doc/lammps/examples/mscg/output_9Jan17/b-spline.out /<>/debian/lammps-doc/usr/share/doc/lammps/examples/mscg/data.meoh.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/mscg/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/mscg/dump.meoh.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/mscg/in.mscg /<>/debian/lammps-doc/usr/share/doc/lammps/examples/mscg/log.31Mar17.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/mscg/control.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/meam/log.19May17.meam.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/meam/data.meam.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/meam/SiC.meam /<>/debian/lammps-doc/usr/share/doc/lammps/examples/meam/log.19May17.meam.shear.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/meam/Ni.meam /<>/debian/lammps-doc/usr/share/doc/lammps/examples/meam/log.19May17.meamc.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/meam/in.meamc.shear /<>/debian/lammps-doc/usr/share/doc/lammps/examples/meam/library.meam.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/meam/log.19May17.meamc.shear.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/meam/in.meam.shear /<>/debian/lammps-doc/usr/share/doc/lammps/examples/meam/log.19May17.meamc.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/meam/log.19May17.meam.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/meam/log.19May17.meamc.shear.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/meam/in.meamc /<>/debian/lammps-doc/usr/share/doc/lammps/examples/meam/log.19May17.meam.shear.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/meam/in.meam /<>/debian/lammps-doc/usr/share/doc/lammps/examples/msst/log.5Oct16.msst.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/msst/in.msst /<>/debian/lammps-doc/usr/share/doc/lammps/examples/msst/log.5Oct16.msst.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/peri/log.6Jul17.peri.lps.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/peri/in.peri.eps /<>/debian/lammps-doc/usr/share/doc/lammps/examples/peri/in.peri.ves /<>/debian/lammps-doc/usr/share/doc/lammps/examples/peri/in.peri-pmb /<>/debian/lammps-doc/usr/share/doc/lammps/examples/peri/log.6Jul17.peri.pmb.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/peri/log.6Jul17.peri.pmb.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/peri/log.6Jul17.peri.eps.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/peri/in.peri.pmb /<>/debian/lammps-doc/usr/share/doc/lammps/examples/peri/log.6Jul17.peri.eps.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/peri/log.6Jul17.peri.ves.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/peri/log.6Jul17.peri.ves.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/peri/log.6Jul17.peri.lps.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/peri/in.peri.lps /<>/debian/lammps-doc/usr/share/doc/lammps/examples/tad/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/tad/log.5Oct16.tad.g++.3 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/tad/Si.sw /<>/debian/lammps-doc/usr/share/doc/lammps/examples/tad/in.tad /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/in.snap.W.2940 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/He_He_JW2013.table.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/Ta06A.snapcoeff /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/in.snap.Ta06A /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/log.20Apr18.snap.Mo_Chen.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/log.20Apr18.snap.Ta06A.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/Mo_Chen_PRM2017.snapcoeff /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/log.20Apr18.snap.hybrid.WSNAP.HePair.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/in.snap.hybrid.WSNAP.HePair /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/W_He_JW2013.table.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/log.20Apr18.snap.Ta06A.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/Ta06A.snap /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/log.20Apr18.snap.W.2940.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/log.20Apr18.snap.hybrid.WSNAP.HePair.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/Mo_Chen_PRM2017.snapparam /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/Mo_Chen_PRM2017.snap /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/W_2940_2017_2.snapparam /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/W_2940_2017_2.snap /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/Ta06A.snapparam /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/in.snap.Mo_Chen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/log.20Apr18.snap.W.2940.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/log.20Apr18.snap.Mo_Chen.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/W_2940_2017_2.snapcoeff /<>/debian/lammps-doc/usr/share/doc/lammps/examples/snap/W_2940_2017_2_He_JW2013.snap /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/bodies.txt /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/data.rigid /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.nve.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.poems.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/in.rigid.tnr /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/data.rigid.tnr.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/in.rigid.atomvar /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.nve.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.atomvar.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.nve.early.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/in.rigid.property /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.early.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.poems2.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/in.rigid.poems /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.property.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.nve.early.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.early.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/in.rigid.atomfile /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.poems2.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/in.rigid.nve.early /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.property.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.tnr.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.poems.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.atomfile.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/in.rigid.poems2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.tnr.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.atomvar.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/in.rigid.nve /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.atomfile.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/in.rigid.early /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/data.rigid-property /<>/debian/lammps-doc/usr/share/doc/lammps/examples/rigid/in.rigid /<>/debian/lammps-doc/usr/share/doc/lammps/examples/cmap/gagg.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/cmap/in.cmap /<>/debian/lammps-doc/usr/share/doc/lammps/examples/cmap/log.11Apr17.cmap.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/cmap/log.11Apr17.cmap.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/cmap/charmm22.cmap.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/obstacle/log.5Oct16.obstacle.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/obstacle/log.5Oct16.obstacle.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/obstacle/in.obstacle /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/log.4May17.pair_python_coulomb.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/funcs.py /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/in.python /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/log.4May17.pair_python_coulomb.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/log.4May17.pair_python_table.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/log.4May17.pair_python_melt.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/in.pair_python_coulomb /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/log.4May17.pair_python_table.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/py_nve.py /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/log.4May17.pair_python_spce.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/in.pair_python_spce /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/in.fix_python_invoke /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/in.pair_python_melt /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/in.pair_python_hybrid /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/py_pot.py /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/log.4May17.pair_python_long.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/in.fix_python_move_nve_melt /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/log.5Oct16.python.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/log.5Oct16.python.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/in.pair_python_long /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/in.fix_python_move_nve_melt_opt /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/log.4May17.pair_python_long.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/log.4May17.pair_python_coulomb.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/log.4May17.pair_python_melt.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/log.4May17.pair_python_hybrid.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/README.fix_python_move /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/data.spce.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/log.4May17.pair_python_spce.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/log.4May17.pair_python_hybrid.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/in.pair_python_table /<>/debian/lammps-doc/usr/share/doc/lammps/examples/python/README.pair_python /<>/debian/lammps-doc/usr/share/doc/lammps/examples/prd/screen.5Oct16.prd.g++.8.3.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/prd/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/prd/screen.5Oct16.prd.g++.8.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/prd/screen.5Oct16.prd.g++.4.2.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/prd/Si.sw /<>/debian/lammps-doc/usr/share/doc/lammps/examples/prd/screen.5Oct16.prd.g++.4.0.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/prd/log.5Oct16.prd.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/prd/screen.5Oct16.prd.g++.4.3.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/prd/screen.5Oct16.prd.g++.8.2.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/prd/log.5Oct16.prd.g++.8 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/prd/screen.5Oct16.prd.g++.8.0.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/prd/in.prd /<>/debian/lammps-doc/usr/share/doc/lammps/examples/prd/screen.5Oct16.prd.g++.4.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/colloid/in.colloid /<>/debian/lammps-doc/usr/share/doc/lammps/examples/colloid/log.5Oct16.colloid.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/colloid/log.5Oct16.colloid.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/VISCOSITY/profile.13Oct16.mp.2d.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/VISCOSITY/profile.13Oct16.nemd.2d.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/VISCOSITY/log.13Oct16.wall.2d.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/VISCOSITY/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/VISCOSITY/profile.13Oct16.einstein.2d.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/VISCOSITY/in.gk.2d /<>/debian/lammps-doc/usr/share/doc/lammps/examples/VISCOSITY/in.einstein.2d /<>/debian/lammps-doc/usr/share/doc/lammps/examples/VISCOSITY/in.wall.2d /<>/debian/lammps-doc/usr/share/doc/lammps/examples/VISCOSITY/in.mp.2d /<>/debian/lammps-doc/usr/share/doc/lammps/examples/VISCOSITY/profile.13Oct16.wall.2d.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/VISCOSITY/log.13Oct16.gk.2d.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/VISCOSITY/log.13Oct16.einstein.2d.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/VISCOSITY/log.13Oct16.mp.2d.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/VISCOSITY/profile.13Oct16.gk.2d.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/VISCOSITY/log.13Oct16.nemd.2d.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/VISCOSITY/in.nemd.2d /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/log.5Oct16.comb3.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/in.comb.Cu /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/data.m-HfO2.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/log.5Oct16.comb.Si.elastic.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/in.comb.HfO2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/log.5Oct16.comb3.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/data.comb3-OHCCu.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/in.comb.Si /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/data.Cu2O.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/ffield.comb.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/data.CuaS.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/log.5Oct16.comb.Si.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/log.5Oct16.comb.Si.elastic.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/log.5Oct16.comb.HfO2.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/log.5Oct16.comb.Cu2O.elastic.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/log.5Oct16.comb.HfO2.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/log.5Oct16.comb.Cu2O.elastic.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/log.5Oct16.comb.Si.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/log.5Oct16.comb.Cu.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/in.comb.Cu2O.elastic /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/lib.comb3.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/elastic.f90.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/data.t-HfO2.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/ffield.comb3.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/in.comb3 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/data.c-HfO2.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/in.comb.Si.elastic /<>/debian/lammps-doc/usr/share/doc/lammps/examples/comb/log.5Oct16.comb.Cu.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/voronoi/log.5Oct16.voronoi.data.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/voronoi/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/voronoi/in.voronoi.data /<>/debian/lammps-doc/usr/share/doc/lammps/examples/voronoi/log.5Oct16.voronoi.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/voronoi/log.5Oct16.voronoi.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/voronoi/in.voronoi.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/voronoi/log.5Oct16.voronoi.2d.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/voronoi/in.voronoi.2d /<>/debian/lammps-doc/usr/share/doc/lammps/examples/voronoi/log.5Oct16.voronoi.data.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/voronoi/log.5Oct16.voronoi.2d.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/controller/log.5Oct16.controller.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/controller/log.5Oct16.controller.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/controller/in.controller /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/log.5Oct16.vashishta.table.inp.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/log.5Oct16.vashishta.inp.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/log.5Oct16.vashishta.sio2.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/log.5Oct16.indiumphosphide.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/log.5Oct16.vashishta.table.inp.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/log.5Oct16.vashishta.sio2.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/log.5Oct16.indiumphosphide.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/data.quartz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/in.vashishta.sio2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/SiO.1990.vashishta /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/in.vashishta.inp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/log.5Oct16.sio2.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/InP.vashishta /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/log.5Oct16.vashishta.table.sio2.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/in.vashishta.table.inp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/in.vashishta.table.sio2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/log.5Oct16.vashishta.inp.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/log.5Oct16.sio2.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/vashishta/log.5Oct16.vashishta.table.sio2.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/in.spce.ehex.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/out.10May16.Espce.hex.g++.32 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/in.lj.hex.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/out.10May16.Tlj.hex.g++.32 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/log.10May16.lj.hex.g++.32.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/out.10May16.Elj.hex.g++.32 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/out.10May16.Elj.ehex.g++.32 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/out.10May16.Tspce.hex.g++.32 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/out.10May16.Tspce.ehex.g++.32 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/out.10May16.Tlj.ehex.g++.32 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/data.lj.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/out.10May16.Espce.ehex.g++.32 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/log.10May16.spce.ehex.g++.32.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/log.10May16.spce.hex.g++.32.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/in.spce.hex.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/log.10May16.lj.ehex.g++.32.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/data.spce.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/HEAT/in.lj.ehex.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/initial.hop1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/log.19Jun17.neb.sivac.g++.8 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/log.19Jun17.neb.hop1.end.g++.8 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/in.neb.hop1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/initial.sivac.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/initial.hop2.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/log.19Jun17.neb.hop2.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/log.19Jun17.neb.hop1.end.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/in.neb.hop1.end /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/initial.hop1.end.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/Si.sw /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/log.19Jun17.neb.hop1.g++.8 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/log.19Jun17.neb.hop1.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/log.19Jun17.neb.sivac.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/final.hop1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/in.neb.sivac /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/in.neb.hop2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/final.sivac /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/final.hop2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/neb/log.19Jun17.neb.hop2.g++.8 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/coreshell/in.coreshell.wolf /<>/debian/lammps-doc/usr/share/doc/lammps/examples/coreshell/log.9Nov16.coreshell.dsf.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/coreshell/log.5Oct16.coreshell.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/coreshell/in.coreshell /<>/debian/lammps-doc/usr/share/doc/lammps/examples/coreshell/log.22Sep17.coreshell.wolf.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/coreshell/in.coreshell.thermostats /<>/debian/lammps-doc/usr/share/doc/lammps/examples/coreshell/log.5Oct16.coreshell.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/coreshell/data.coreshell.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/coreshell/in.coreshell.dsf /<>/debian/lammps-doc/usr/share/doc/lammps/examples/coreshell/log.9Nov16.coreshell.dsf.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/coreshell/log.22Sep17.coreshell.wolf.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/eim/ffield.eim.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/eim/in.eim /<>/debian/lammps-doc/usr/share/doc/lammps/examples/eim/data.eim.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/eim/log.5Oct16.eim.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/eim/log.5Oct16.eim.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/hugoniostat/in.hugoniostat.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/hugoniostat/log.5Oct16.hugoniostat.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/hugoniostat/log.5Oct16.hugoniostat.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_quest/in.lammps /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_quest/log.lammps.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_quest/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_quest/lmppath.h /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_quest/qstexe.h /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_quest/lmpqst.cpp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_quest/log.lammps.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_quest/Makefile.g++ /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_quest/si_111.in.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran/libfwrapper.c /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/multiple/multiple.cpp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/multiple/in.chain /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/multiple/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/multiple/data.chain.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/many2many.h /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/one2many.cpp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/lammps_data_write.cpp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/memory.cpp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/files.h /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/error.h /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/many2one.h /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/files.cpp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/many2many.cpp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/error.cpp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/irregular.cpp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/one2many.h /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/send2one.cpp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/memory.h /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/many2one.cpp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/lammps_data_write.h /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/irregular.h /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/Makefile.g++ /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/library/send2one.h /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_spparks/in.lammps /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_spparks/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_spparks/lmppath.h /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_spparks/log.spparks.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_spparks/log.spparks.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_spparks/lmpspk.cpp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_spparks/log.lammps.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_spparks/in.spparks /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_spparks/Makefile.g++ /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_spparks/spkpath.h /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/lammps_spparks/log.lammps.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran_dftb/in.simple /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran_dftb/LAMMPS-wrapper.cpp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran_dftb/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran_dftb/LAMMPS-wrapper2.h /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran_dftb/log.simple /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran_dftb/makefile /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran_dftb/dftb_pin.hsd.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran_dftb/data.diamond.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran_dftb/dftb_in.hsd /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran_dftb/LAMMPS-wrapper.h /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran_dftb/LAMMPS.F90.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran_dftb/LAMMPS-wrapper2.cpp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran_dftb/simple.f90 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/simple/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/simple/simple.cpp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/simple/log.simple.c++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/simple/simple.c.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/simple/log.simple.c++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/simple/simple.f90 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/simple/in.lj /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran2/in.simple /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran2/LAMMPS-wrapper.cpp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran2/makefile /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran2/LAMMPS-wrapper.h /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran2/LAMMPS.F90.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran2/simple.f90.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/COUPLE/fortran2/README.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/in.reax.tatb /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/in.reaxc.rdx /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/data.tatb.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/log.8March18.reax.rdx.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/RDX/in.RDX /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/RDX/lmp_control /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/RDX/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/RDX/log.8Mar18.RDX.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/RDX/param.qeq /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/RDX/ffield.reax.rdx.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/RDX/data.RDX.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/RDX/log.8Mar18.RDX.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/CHO/lmp_control /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/CHO/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/CHO/ffield.reax.cho.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/CHO/data.CHO.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/CHO/param.qeq /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/CHO/log.8Mar18.CHO.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/CHO/log.8Mar18.CHO.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/CHO/in.CHO /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/in.reaxc.tatb /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/data.rdx /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/log.8March18.reaxc.tatb.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/FC/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/FC/log.8Mar18.FC.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/FC/data.FC.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/FC/in.FC /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/FC/log.8Mar18.FC.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/FC/ffield.reax.FC.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/log.8March18.reax.tatb.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/log.8March18.reax.tatb.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/log.8March18.reaxc.tatb.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/ffield.reax.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/ZnOH2/log.8Mar18.ZnOH2.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/ZnOH2/lmp_control /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/ZnOH2/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/ZnOH2/log.8Mar18.ZnOH2.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/ZnOH2/param.qeq /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/ZnOH2/in.ZnOH2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/ZnOH2/ffield.reax.ZnOH.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/ZnOH2/data.ZnOH2.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/AB/in.AB /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/AB/lmp_control /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/AB/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/AB/param.qeq /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/AB/log.8Mar18.AB.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/AB/data.AB.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/AB/log.8Mar18.AB.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/AB/ffield.reax.AB.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/control.reax_c.rdx /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/ci-reaxFF/ci-reaxFF_ZBL.dat.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/ci-reaxFF/log.8Mar18.ci-reax.CH.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/ci-reaxFF/CH4.dat.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/ci-reaxFF/ffield.ci-reax.CH.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/ci-reaxFF/control /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/ci-reaxFF/in.ci-reax.CH /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/ci-reaxFF/log.8Mar18.ci-reax.CH.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/log.8March18.reaxc.rdx.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/VOH/lmp_control /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/VOH/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/VOH/data.VOH.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/VOH/log.8Mar18.VOH.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/VOH/log.8Mar18.VOH.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/VOH/in.VOH /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/VOH/param.qeq /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/VOH/ffield.reax.V_O_C_H.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/HNS/log.8Mar18.reaxc.hns.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/HNS/README.txt /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/HNS/ffield.reax.hns.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/HNS/in.reaxc.hns /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/HNS/log.8Mar18.reaxc.hns.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/HNS/data.hns-equil.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/FeOH3/lmp_control /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/FeOH3/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/FeOH3/data.FeOH3.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/FeOH3/log.5Oct16.FeOH3.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/FeOH3/ffield.reax.Fe_O_C_H.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/FeOH3/param.qeq /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/FeOH3/in.FeOH3 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/FeOH3/log.5Oct16.FeOH3.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/in.reax.rdx /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/log.8March18.reax.rdx.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/log.8March18.reaxc.rdx.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/AuO/ffield.reax.AuO.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/AuO/data.AuO.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/AuO/lmp_control /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/AuO/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/AuO/in.AuO /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/AuO/param.qeq /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/AuO/log.8Mar18.AuO.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/AuO/log.8Mar18.AuO.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/reax/control.reax_c.tatb /<>/debian/lammps-doc/usr/share/doc/lammps/examples/min/in.min /<>/debian/lammps-doc/usr/share/doc/lammps/examples/min/log.5Oct16.min.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/min/in.min.box /<>/debian/lammps-doc/usr/share/doc/lammps/examples/min/log.5Oct16.min.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/min/log.5Oct16.min.box.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/min/log.5Oct16.min.box.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/pour/in.pour /<>/debian/lammps-doc/usr/share/doc/lammps/examples/pour/log.5Oct16.pour.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/pour/in.pour.2d.molecule /<>/debian/lammps-doc/usr/share/doc/lammps/examples/pour/log.5Oct16.pour.2d.molecule.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/pour/molecule.vshape /<>/debian/lammps-doc/usr/share/doc/lammps/examples/pour/log.5Oct16.pour.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/pour/log.5Oct16.pour.2d.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/pour/log.5Oct16.pour.2d.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/pour/in.pour.2d /<>/debian/lammps-doc/usr/share/doc/lammps/examples/pour/log.5Oct16.pour.2d.molecule.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/threebody/BNC.tersoff.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/threebody/Si.sw /<>/debian/lammps-doc/usr/share/doc/lammps/examples/threebody/InP.vashishta /<>/debian/lammps-doc/usr/share/doc/lammps/examples/threebody/in.threebody /<>/debian/lammps-doc/usr/share/doc/lammps/examples/threebody/CdTeZnSeHgS0.sw.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/deposit/log.5Oct16.deposit.molecule.shake.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/deposit/in.deposit.atom /<>/debian/lammps-doc/usr/share/doc/lammps/examples/deposit/log.5Oct16.deposit.atom.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/deposit/log.5Oct16.deposit.molecule.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/deposit/in.deposit.molecule /<>/debian/lammps-doc/usr/share/doc/lammps/examples/deposit/molecule.dimer.shake /<>/debian/lammps-doc/usr/share/doc/lammps/examples/deposit/log.5Oct16.deposit.molecule.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/deposit/log.5Oct16.deposit.molecule.shake.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/deposit/molecule.dimer /<>/debian/lammps-doc/usr/share/doc/lammps/examples/deposit/log.5Oct16.deposit.atom.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/deposit/in.deposit.molecule.shake /<>/debian/lammps-doc/usr/share/doc/lammps/examples/nemd/log.5Oct16.nemd.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/nemd/log.5Oct16.nemd.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/nemd/in.nemd /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ELASTIC/potential.mod /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ELASTIC/init.mod /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ELASTIC/Si.sw /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ELASTIC/in.elastic.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ELASTIC/displace.mod /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ELASTIC/compliance.py /<>/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/in.heat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/log.13Oct16.heat.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/profile.1Feb14.heatflux.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/in.ehex /<>/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/log.13Oct16.ehex.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/profile.7Jun16.heat.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/log.13Oct16.mp.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/profile.1Feb14.langevin.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/profile.7Jun16.ehex.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/in.langevin /<>/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/log.13Oct16.heatflux.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/log.13Oct16.langevin.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/in.mp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/in.heatflux /<>/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/profile.1Feb14.mp.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/flow/in.flow.pois /<>/debian/lammps-doc/usr/share/doc/lammps/examples/flow/log.5Oct16.flow.couette.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/flow/log.5Oct16.flow.pois.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/flow/log.5Oct16.flow.pois.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/flow/in.flow.couette /<>/debian/lammps-doc/usr/share/doc/lammps/examples/flow/log.5Oct16.flow.couette.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/MC/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/MC/in.mc /<>/debian/lammps-doc/usr/share/doc/lammps/examples/MC/log.13Oct16.mc.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/kim/in.kim.lj.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/kim/log.28Jun15.kim.lj.ubuntu.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/kim/log.28Jun15.kim.lj.lmp.ubuntu.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/kim/log.28Jun15.kim.lj.ubuntu.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/kim/log.28Jun15.kim.lj.lmp.ubuntu.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/kim/in.kim.lj /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ellipse/in.ellipse.resquared /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ellipse/in.ellipse.gayberne /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ellipse/log.5Oct16.ellipse.resquared.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ellipse/log.5Oct16.ellipse.resquared.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ellipse/log.5Oct16.ellipse.gayberne.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ellipse/log.5Oct16.ellipse.gayberne.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/util/sequence.txt /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/util/input.ref /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/util/generate_simple.py.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/util/generate.py.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/util/sequence_simple.txt /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/duplex2/input.duplex2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/duplex2/log.24Mar17.duplex2.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/duplex2/log.24Mar17.duplex2.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/duplex2/data.duplex2.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/duplex1/data.duplex1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/duplex1/input.duplex1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/duplex1/log.24Mar17.duplex1.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/duplex1/log.24Mar17.duplex1.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/duplex2/input.duplex2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/duplex2/log.24Mar17.duplex2.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/duplex2/log.24Mar17.duplex2.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/duplex2/data.duplex2.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/duplex1/data.duplex1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/duplex1/input.duplex1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/duplex1/log.24Mar17.duplex1.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/duplex1/log.24Mar17.duplex1.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smd/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smd/rubber_rings_3d/washer_hex_adjusted.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smd/rubber_rings_3d/rubber_rings_3d.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smd/fluid_structure_interaction/fluid_structure_interaction.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smd/funnel_flow/boundary.stl.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smd/funnel_flow/funnel_flow.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smd/aluminum_strip_pull/aluminum_strip_pull.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smd/rubber_strip_pull/plot.gpl /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smd/rubber_strip_pull/rubber_strip_pull.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/quip/data_sw /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/quip/data_gap /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/quip/gap_example.xml.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/quip/log.24Jul17.molecular.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/quip/in.sw /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/quip/in.molecular /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/quip/in.gap /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/quip/log.24Jul17.sw.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/quip/log.24Jul17.gap.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/quip/out.molecular.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/quip/gap_example_sparse.dat.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/quip/sw_example.xml /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/quip/log.24Jul17.sw.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/quip/log.24Jul17.gap.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/quip/log.24Jul17.molecular.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/quip/methane-box-8.data /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/awpmd/H/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/awpmd/H/in.h_molecule /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/awpmd/H/data.h_atom /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/awpmd/H/data.h_molecule /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/awpmd/H/in.h_atom /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/polymer/out.polymer_setgamma /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/polymer/in.polymer_default_gamma.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/polymer/data.polymer.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/polymer/out.polymer_default_gamma /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/polymer/in.polymer_setgamma.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/dragforce/setgamma13d0_drag.out.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/dragforce/data.one_radius16d2.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/dragforce/in.setgamma_drag /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/dragforce/in.defaultgamma_drag.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/dragforce/defaultgamma_drag.out.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/planewall/wall_setgamma.out.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/planewall/data.one_radius16d2.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/planewall/in.planewall_default_gamma.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/planewall/in.planewall_set_gamma.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/planewall/wall_defaultgamma.out.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/fourspheres/in.fourspheres_set_gamma /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/fourspheres/in.fourspheres_default_gamma.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/fourspheres/fourspheres_velocity0d0001_setgamma.out.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/fourspheres/fourspheres_velocity0d0001_defaultgamma.out.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/fourspheres/data.four.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/confined_colloid/results64.out /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/confined_colloid/in.confined_colloids.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/microrheology/in.microrheology_set_gamma.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/microrheology/data.two.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/microrheology/microrheology_defaultgamma.out.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/microrheology/in.microrheology_default_gamma.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/lb/microrheology/microrheology_setgamma.out.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgsdk/sds-monolayer/in.sds-regular /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgsdk/sds-monolayer/in.sds-hybrid /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgsdk/sds-monolayer/log.sds-hybrid.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgsdk/sds-monolayer/data.sds.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgsdk/sds-monolayer/log.sds-regular.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgsdk/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgsdk/peg-verlet/log.pegc12e8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgsdk/peg-verlet/data.pegc12e8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgsdk/peg-verlet/log.pegc12e8-angle.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgsdk/peg-verlet/in.pegc12e8-angle /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/cgsdk/peg-verlet/in.pegc12e8 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/mgpt/log.vacmin-bcc /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/mgpt/Ta6.8x.mgpt.README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/mgpt/in.vacmin-bcc /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/mgpt/log.bcc0 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/mgpt/in.bcc0 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/mgpt/log.vac0-bcc /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/mgpt/Ta6.8x.mgpt.potin.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/mgpt/Ta6.8x.mgpt.parmin /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/mgpt/in.vac0-bcc /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/rhok/in.setup /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/rhok/in.crystal /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/rhok/log.22Sep2017.crystal.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/rhok/log.22Sep2017.setup.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/rhok/in.pinning /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/rhok/log.22Sep2017.pinning.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/rhok/log.22Sep2017.crystal.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/rhok/README.md /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/rhok/log.22Sep2017.setup.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/rhok/log.22Sep2017.pinning.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/cnp/log.31May17.cnp.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/cnp/in.cnp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/cnp/Cu_Mishin1.eam.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/addtorque/log.9Nov16.addtorque.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/addtorque/log.9Nov16.addtorque.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/addtorque/in.addtorque /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/gle/log.h2o-smart.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/gle/data.h2o-smart.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/gle/data.h2o-quantum.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/gle/smart.A /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/gle/qt-300k.A /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/gle/in.h2o-quantum /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/gle/qt-300k.C /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/gle/log.h2o-quantum.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/gle/in.h2o-smart /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/deca-ala-solv.psf.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/in.melt_imd /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/bucky_cnt_imd.vmd /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/melt_imd-demo.vmd /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/in.deca-ala-solv-filter_imd /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/deca-ala-solv_imd-demo.vmd /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/in.deca-ala-solv_imd /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/deca-ala_imd-demo.vmd /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/in.bucky-plus-cnt /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/falcon.tcl /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/data.bucky-plus-cnt.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/in.deca-ala_imd /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/melt.psf.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/deca-ala.psf.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/in.bucky-plus-cnt-gpu /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/data.deca-ala-solv.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/bucky-plus-cnt-mol.psf.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/in.deca-ala_imd-gpu /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/imd/in.melt_imd-gpu /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_spline/log.4May2017.meam-spline.TiO2.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_spline/log.4May2017.meam-spline.TiO2.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_spline/in.meam-spline.TiO2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_spline/TiO.meam.spline /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_spline/log.4May2017.meam-spline.Si.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_spline/Si_1.meam.spline.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_spline/in.meam-spline.Si /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_spline/log.4May2017.meam-spline.Si.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/extep/BN.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/extep/log.23Oct17.extep-bn.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/extep/in.extep-bn /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/extep/log.23Oct17.extep-bn.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/sc.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/dc.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/fcc_relax.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/sc_relax.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/bcc_relax.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/hcp_relax.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/dc_relax.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/fcc.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/bcc.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/single_atom.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/energy_conservation.meam.sw.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Ti/beta.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Ti/alpha_relaxation.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Ti/fcc.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Ti/omega.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Ti/hexagonal.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Ti/single_atom.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Ti/alpha.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Ti/energy_conservation.meam.sw.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ees/log.23Jun17.fix_wall.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ees/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ees/in.fix_wall_region /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ees/in.fix_wall /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ees/log.23Jun17.fix_wall_region.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ees/log.23Jun17.fix_wall.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ees/log.23Jun17.fix_wall_region.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ees/Data_wall /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ees/Data_region /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/srp/data.chain.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/srp/in.srp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/basal/in.basal.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/basal/almg.liu.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/filter_corotate/in.bpti /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/filter_corotate/in.peptide /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/filter_corotate/log.22Jun2017.bpti.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/filter_corotate/log.22Jun2017.peptide.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/filter_corotate/data.peptide.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/filter_corotate/data.bpti.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/filter_corotate/log.22Jun2017.peptide.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/filter_corotate/log.22Jun2017.bpti.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/edip/log.4May2017.g++.edip-SiC.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/edip/SiC.edip /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/edip/in.edip-SiC /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/edip/data.SiC.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/edip/in.edip-Si /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/edip/log.4May2017.g++.edip-Si-multi.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/edip/log.4May2017.g++.edip-Si.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/edip/log.4May2017.g++.edip-SiC.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/edip/Si.edip /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/edip/log.4May2017.g++.edip-Si.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/edip/log.4May2017.g++.edip-Si-multi.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/edip/in.edip-Si-multi /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ipi/data.graphene.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ipi/i-pi_positions.xyz.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ipi/in.graphene /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ipi/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ipi/i-pi_input.xml /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ipi/C.opt.tersoff.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/flow_gauss/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/flow_gauss/log.6Jul17.GD.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/flow_gauss/output-files/x_profiles /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/flow_gauss/output-files/Vy_profile /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/flow_gauss/output-files/GD.out /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/flow_gauss/in.GD.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/flow_gauss/log.6Jul17.GD.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/rxn1_stp2_reacted.data_template /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/rxn1_stp2_map /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/rxn1_stp1_reacted.data_template /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/in.tiny_nylon /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/rxn1_stp1_unreacted.data_template /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/rxn1_stp1_map /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/log.20Apr18.tiny_nylon.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/log.20Apr18.tiny_nylon.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/rxn1_stp2_unreacted.data_template /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/tiny_nylon.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp2_reacted.data_template /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp2_map /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp1_reacted.data_template /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/in.large_nylon_melt /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/log.20Apr18.large_nylon_melt.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp1_unreacted.data_template /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/log.20Apr18.large_nylon_melt.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp1_map /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/large_nylon_melt.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp2_unreacted.data_template /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_full/log.16Mar18.bilayer-graphene.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_full/log.16Mar18.bilayer-graphene.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_full/Bi_gr_AB_stack_2L_noH_300K.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_full/in.bilayer-graphene /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/temper_npt/log.temper_npt-17Aug17.g++.8.5.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/temper_npt/log.temper_npt-17Aug17.g++.8.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/temper_npt/log.temper_npt-17Aug17.g++.8.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/temper_npt/log.temper_npt-17Aug17.g++.8.2.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/temper_npt/log.temper_npt-17Aug17.g++.8.0.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/temper_npt/log.temper_npt-17Aug17.g++.8.6.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/temper_npt/data.peptide.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/temper_npt/in.temper_npt /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/temper_npt/log.temper_npt-17Aug17.g++.8.7.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/temper_npt/log.temper_npt-17Aug17.g++.8 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/temper_npt/log.temper_npt-17Aug17.g++.8.3.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/pimd/para-h2/NM.info /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/pimd/para-h2/vmd.src /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/pimd/para-h2/pair.table.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/pimd/para-h2/in.scp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/pimd/para-h2/H2.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/pimd/para-h2/H2.xyz.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/pimd/para-h2/run.sh /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/pimd/prot-hairpin/in.scp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/pimd/prot-hairpin/system.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/pimd/prot-hairpin/run.sh /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/momb/log.17Mar2017.system.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/momb/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/momb/in.system.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/momb/log.17Mar2017.system.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/momb/system.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/momb/Ag_O1X5.5_O2X0.55.eam.fs.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/log.16Mar18.bilayer-graphene.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/data.bilayer-graphene.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/log.16Mar18.atom-diffusion.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/log.16Mar18.bilayer-graphene.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/in.atom-diffusion /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/in.bilayer-graphene /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/data.graphene-adsorbant.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/log.16Mar18.atom-diffusion.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/agni/log.21Feb17.vacancy.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/agni/log.21Feb17.adatom.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/agni/log.21Feb17.adatom.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/agni/in.vacancy /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/agni/in.adatom /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/agni/log.21Feb17.vacancy.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/agni/vacancy.data /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/agni/adatom.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/agni/Al_jpc.agni.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/gr-hBN/log.16Mar18.grhBN.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/gr-hBN/log.16Mar18.grhBN.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/gr-hBN/gr_hBN_Cstack_2L_noH.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/gr-hBN/in.grhBN /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/hBN_AB_stack_2L_noH_equi_300K.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/bilayer-graphene/log.16Mar18.bilayer-graphene.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/bilayer-graphene/log.16Mar18.bilayer-graphene.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/bilayer-graphene/Bi_gr_AB_stack_2L_noH_300K.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/bilayer-graphene/in.bilayer-graphene /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/log.16Mar18.ilp_gr_hBN.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/in.ilp_graphene_hbn /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/log.16Mar18.ilp_gr_hBN.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/ti/in.ti_spring /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-single/log.gREM-npt.9Nov16.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-single/in.gREM-npt /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-single/log.gREM-nvt.9Nov16.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-single/lj.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-single/in.gREM-nvt /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-single/log.gREM-nvt.9Nov16.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-single/log.gREM-npt.9Nov16.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/double-re-short.py.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/415/restart.init.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/clean.sh /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/420/restart.init.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/walker.bkp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/400/restart.init.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/in.gREM /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/405/restart.init.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/425/restart.init.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/run.sh /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/410/restart.init.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/in.gREM-temper /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/2/log.lammps.2.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/2/lj.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/1/lj.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/1/log.lammps.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/3/log.lammps.3.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/3/lj.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/0/lj.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/0/log.lammps.0.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/gauss_diel/data.gauss-diel.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/gauss_diel/log.gauss-diel /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/gauss_diel/in.gauss-diel /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/gauss_diel/log.gauss-diel-split /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/gauss_diel/log.gauss-diel-cg /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/gauss_diel/in.gauss-diel-split.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/misc/gauss_diel/in.gauss-diel-cg /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/fep01/log.reference.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/fep01/fep01.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/fep01/in.fep01.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/fep01/log.reference-omp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/fep01/log.lammps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/fep01/in.fep01.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/fep01/data.0.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/fdti10/in.fdti10.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/fdti10/fdti10.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/fdti10/log.lammps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/bar01/in.bar01.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/bar01/bar01.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/bar01/log.lammps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/fdti01/fdti01.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/fdti01/in.fdti01.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/fdti01/log.lammps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/bar10/bar10.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/bar10/in.bar10.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/bar10/log.lammps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/mols/CO-CC.zmat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/mols/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/mols/CC-CO.ff /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/mols/spce.zmat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/mols/spce.ff /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/mols/data.1.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/mols/CC-CO.zmat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/mols/data.0.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/fep10/in.fep10.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/fep10/fep10.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CC-CO/fep10/log.lammps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4-CF4/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4-CF4/bar01/in.bar01.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4-CF4/bar01/bar01.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4-CF4/bar01/log.lammps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4-CF4/bar10/bar10.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4-CF4/bar10/in.bar10.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4-CF4/bar10/log.lammps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4-CF4/mols/CH4-CF4.ff /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4-CF4/mols/spce.zmat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4-CF4/mols/spce.ff /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4-CF4/mols/data.1.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4-CF4/mols/CF4-CH4.zmat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4-CF4/mols/CH4-CF4.zmat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4-CF4/mols/data.0.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4hyd/fep01/fep01.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4hyd/fep01/in.fep01.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4hyd/fep01/log.lammps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4hyd/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4hyd/fdti10/fdti10.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4hyd/fdti10/in.fdti10.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4hyd/fdti10/log.lammps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4hyd/fdti01/in.fdti01.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4hyd/fdti01/fdti01.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4hyd/fdti01/log.lammps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4hyd/mols/methane.zmat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4hyd/mols/oplsaa.ff /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4hyd/mols/tip4pew.ff /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4hyd/mols/tip4pew.zmat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4hyd/mols/data.lmp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4hyd/fep10/fep10.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4hyd/fep10/log.lammps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/fep/CH4hyd/fep10/in.fep10.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/map.in.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/in.disp2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/in.dos /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/data.pos.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/dos.dat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/in.EAM3D /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/CuPhonon.log.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/pdos.eps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/plot.disp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/plot.dos /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/in.disp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/disp.dat.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/pdisp.gnuplot /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/CuPhonon.bin.6500000.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/cuu3.eam.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/disp-expr.dat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/pdisp.eps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/dos-expr.dat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/dos-ld.dat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/disp-ld.dat.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/phonon.bin.2000000 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/in.Ana /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/disp.dat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/map.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/phonon.log /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/plot.disp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/in.disp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/log.lammps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/pdisp.gnuplot /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/pdisp.eps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/data.pos /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/4-Graphene/in.graphene /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/4-Graphene/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/4-Graphene/Graphene.log.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/4-Graphene/data.pos.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/4-Graphene/pdisp.dat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/4-Graphene/map.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/4-Graphene/plot.disp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/4-Graphene/in.disp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/4-Graphene/pdisp.gnuplot /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/4-Graphene/Graphene.bin.6000000.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/4-Graphene/pdisp.eps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/4-Graphene/SiC.tersoff /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/phonon.bin.2000000 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/phonon.log.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/in.Ana /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/data.pos.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/disp.dat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/map.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/plot.disp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/in.disp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/log.lammps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/pdisp.gnuplot /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/pdisp.eps.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/sph/cavity_flow/cavity_flow.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/sph/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/sph/water_collapse/water_collapse.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/sph/water_collapse/data.initial.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/sph/shock_tube/shock2d.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/sph/shock_tube/shock3d.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/sph/shock_tube/exact_solution.dat.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/sph/shock_tube/compare_exact.gpl /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/sph/heatconduction/compare_analytic.gpl /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/sph/heatconduction/sph_heat_conduction_2d.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/sph/heatconduction/sph_heat_conduction_3d.lmp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/vtk/in.vtk /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/vtk/in.vtp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/diffusion/msd.sphere.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/diffusion/msd_plot2.pdf.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/diffusion/msd.plane.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/diffusion/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/diffusion/plot_msd.gpl /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/diffusion/msd.cyl.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/diffusion/msd.cyl.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/diffusion/msd.plane.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/diffusion/msd.sphere.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/diffusion/msd.pdf.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/virus/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/virus/init.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/virus/vir.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/thylakoid/thylakoid.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/thylakoid/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/thylakoid/thylakoid.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/energy/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/energy/energy.sh /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/energy/sphere.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/energy/torus.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/energy/torus.setup /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/energy/energy.plane.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/energy/energy_conservation.pdf.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/energy/plot_energies.gpl /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/energy/cylinder.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/energy/plane.anneal.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/energy/energy_conservation.png /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/energy/plane.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/energy/sphere.setup /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/energy/cylinder.setup /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/manifold/energy/energy.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/bocs/log.20Apr18.methanol.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/bocs/methanol.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/bocs/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/bocs/lammps_nb_MET-MET.table.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/bocs/in.methanol /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/bocs/log.20Apr18.methanol.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/toluene/data.toluene.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/toluene/log.toluene.nh.11Aug17.linux.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/toluene/in.toluene.lang.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/toluene/log.toluene.lang.11Aug17.linux.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/toluene/in.toluene.nh.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/toluene/log.toluene.lang.11Aug17.linux.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/toluene/log.toluene.nh.11Aug17.linux.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/butane/log.butane.nh.18Jul15.linux.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/butane/log.butane.nh.18Jul15.linux.3.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/butane/log.butane.lang.18Jul15.linux.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/butane/log.butane.lang.18Jul15.linux.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/butane/in.butane.nh /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/butane/in.butane.lang /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/butane/data.butane.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/swm4-ndp/data.swm4-ndp.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/swm4-ndp/in.swm4-ndp.nh /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/swm4-ndp/in.swm4-ndp.lang /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/swm4-ndp/log.swm4-ndp.nh.8Jul15.linux.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/swm4-ndp/log.swm4-ndp.lang.8Jul15.linux.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/swm4-ndp/log.swm4-ndp.lang.8Jul15.linux.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/swm4-ndp/log.swm4-ndp.nh.8Jul15.linux.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/ethanol/in.ethanol.nh /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/ethanol/log.ethanol.lang.8Jul15.linux.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/ethanol/log.ethanol.nh.8Jul15.linux.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/ethanol/log.ethanol.nh.8Jul15.linux.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/ethanol/data.ethanol.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/ethanol/in.ethanol.lang /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/drude/ethanol/log.ethanol.lang.8Jul15.linux.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/mofff/hkust1.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/mofff/in.hkust1_long.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/mofff/log.17Jan18.hkust1_long.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/mofff/log.17Jan18.hkust1_long.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/mofff/in.hkust1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/mofff/log.17Jan18.hkust1.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/mofff/log.17Jan18.hkust1.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/H2/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/H2/in.h2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/H2/data.h2.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/Li-solid/in.Li.ang /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/Li-solid/data.Li.ang.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/Li-solid/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/Li-solid/data.Li.bohr.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/Li-solid/in.Li.bohr /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/Auger-Adamantane/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/Auger-Adamantane/data.adamantane_ionized.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/Auger-Adamantane/in.adamantane_ionized.nve /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/Auger-Adamantane/data.adamantane.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/H/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/H/in.h_atom.spe.bohr /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/H/data.h_atom.ang /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/H/data.h_atom.bohr /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/H/in.h_atom.spe.ang /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/fixed-core/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/fixed-core/CH4/data.CH4fc.ang /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/fixed-core/CH4/in.CH4fc.spe.ang /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/fixed-core/CH4/data.CH4fc.bohr /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/fixed-core/CH4/in.CH4fc.bohr /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/fixed-core/CH4/in.CH4fc.spe.bohr /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/fixed-core/CH4/in.CH4fc.ang /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/fixed-core/C2H6/in.C2H6fc.ang /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/fixed-core/C2H6/data.C2H6fc.ang /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/fixed-core/C2H6/data.C2H6fc.bohr /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/fixed-core/C2H6/in.C2H6fc.bohr /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/CH4/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/CH4/data.ch4_ionized /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/CH4/in.ch4.min /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/CH4/data.ch4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/CH4/in.ch4_ionized.dynamics /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/CH4/in.ch4.dynamics /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/Li-dendritic/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/Li-dendritic/data.Li-dendritic.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/Li-dendritic/in.Li-dendritic.min /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/Li-dendritic/in.Li-dendritic.nvt /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/H_plasma/in.h2bulk.nve /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/H_plasma/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/H_plasma/in.h2bulk.npt /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/H_plasma/data.h2bulk.ang.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/H_plasma/in.h2bulk.nve.ang /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/H_plasma/data.h2bulk.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/Be-solid/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/Be-solid/in.Be-solid.spe /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/Be-solid/data.Be-solid.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/ECP/SiH4/in.SiH4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/ECP/SiH4/data.SiH4.ang /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/ECP/SiH4/in.SiH4.ang /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/ECP/SiH4/data.SiH4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/ECP/SiC/bulk/data.SiC.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/ECP/SiC/bulk/in.SiC /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/ECP/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/ECP/Si2H6/data.Si2H6 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/ECP/Si2H6/in.Si2H6.ang /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/ECP/Si2H6/in.Si2H6 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/eff/ECP/Si2H6/data.Si2H6.ang /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/diffraction/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/diffraction/BulkNi.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/diffraction/Output/bulkNi_001.saed.0_VisIt_Image.png /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/diffraction/Output/log.cite /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/diffraction/Output/bulkNi_001.saed.0.vtk.correct.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/diffraction/Output/bulkNi.hist.xrd.correct.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/diffraction/Output/bulkNi.log.correct /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/diffraction/Output/BulkNi.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/meso/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/meso/tdpd/log.16Aug17.tdpd.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/meso/tdpd/log.16Aug17.tdpd.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/meso/tdpd/in.tdpd /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/meso/tdpd/cc.profile.16Aug17.tdpd.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/meso/tdpd/cc.profile.16Aug17.tdpd.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/meso/mdpd/log.16Aug17.mdpd.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/meso/mdpd/in.mdpd /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/meso/mdpd/log.16Aug17.mdpd.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/meso/edpd/log.16Aug17.edpd.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/meso/edpd/temp.profile.16Aug17.edpd.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/meso/edpd/in.edpd /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/meso/edpd/temp.profile.16Aug17.edpd.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/meso/edpd/log.16Aug17.edpd.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/uef/npt_biaxial/data.wca.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/uef/npt_biaxial/log.22Sep17.npt_biaxial.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/uef/npt_biaxial/log.22Sep17.npt_biaxial.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/uef/npt_biaxial/in.npt_biaxial /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/uef/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/uef/nvt_uniaxial/data.wca.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/uef/nvt_uniaxial/log.22Sep17.npt_uniaxial.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/uef/nvt_uniaxial/log.22Sep17.npt_uniaxial.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/uef/nvt_uniaxial/in.nvt_uniaxial /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/log.peptide-spring2.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/peptide2.colvars.state /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/out2.colvars.traj.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/peptide.colvars /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/log.peptide-colvars2-4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/log.peptide-colvars2.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/log.peptide-colvars.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/peptide.colvars2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/log.peptide-colvars-1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/out2.colvars.state /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/peptide.psf.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/out.colvars.traj.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/in.peptide-colvars2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/in.peptide-spring2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/data.peptide.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/out.colvars.state /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/in.peptide-colvars /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/in.peptide-spring /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/log.peptide-spring.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/log.peptide-colvars-4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/log.peptide-colvars2-1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/colvars/peptide2.colvars.traj /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpd-vv/log.dpd-vv.reference.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpd-vv/in.dpd-vv /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpd-vv/data.dpd.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpdrx-shardlow/thermo.dpdrx.new /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpdrx-shardlow/thermo.dpdrx /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpdrx-shardlow/params.exp6 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpdrx-shardlow/table.eos.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpdrx-shardlow/kinetics.dpdrx /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpdrx-shardlow/in.dpdrx-shardlow /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpdrx-shardlow/log.dpdrx-shardlow.reference.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpde-shardlow/log.dpde-shardlow.reference.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpde-shardlow/in.dpde-shardlow /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpde-shardlow/data.dpde.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpde-vv/in.dpde-vv /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpde-vv/log.dpde-vv.reference.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpde-vv/data.dpd.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpdp-shardlow/in.dpdp-shardlow /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpdp-shardlow/data.dpd.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpdp-shardlow/log.dpdp-shardlow.reference.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpdh-shardlow/data.dpdh.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpdh-shardlow/log.dpdh-shardlow.reference.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpdh-shardlow/in.dpdh-shardlow /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpd-shardlow/log.dpd-shardlow.reference.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpd-shardlow/in.dpd-shardlow /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/dpd-shardlow/data.dpd.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/multi-lucy/in.multi-lucy /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/multi-lucy/table.multibody.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/dpd/multi-lucy/log.multi-lucy.reference.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/tally/log.12Jun17.stress.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/tally/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/tally/log.12Jun17.force.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/tally/in.force /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/tally/log.12Jun17.force.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/tally/log.12Jun17.pe.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/tally/log.12Jun17.stress.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/tally/in.pe /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/tally/in.stress /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/tally/data.spce.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/tally/log.12Jun17.pe.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smtbq/ffield.smtbq.Al2O3 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smtbq/log.smtbq.Al.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smtbq/log.smtbq.TiO2.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smtbq/ffield.smtbq.TiO2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smtbq/log.smtbq.Al.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smtbq/log.smtbq.Al2O3.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smtbq/in.smtbq.Al2O3 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smtbq/log.smtbq.Al2O3.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smtbq/log.smtbq.TiO2.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smtbq/ffield.smtbq.Al /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smtbq/in.smtbq.Al /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smtbq/in.smtbq.TiO2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/smtbq/data.Alpha.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/in.kernel2d_tet /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/gaussianIC2d_hex27_uniform.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/in.kernel2d_hex /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/gaussianIC2d_tet.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/kernel2d_hex.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/in.gaussianIC2d_hex /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/gaussianIC2d_hex20_uniform.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/in.semicircle /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/in.gaussianIC2d_tet /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/gaussianIC2d_hex.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/in.mesh2d_tet /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/in.gaussianIC2d_hex20_uniform /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/Si.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/kernel2d_tet.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/in.gaussianIC2d_hex27_uniform /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/semicircle.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/gaussianIC1d_hex.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/gaussianIC2d_hex_uniform.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/in.gaussianIC1d_hex /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/Ar_ttm.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/mesh/mesh2d_tet.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/Ar_electrostatic.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/in.concentration.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/in.conducting_interface.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/opp_force.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/concentration.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/Ar_species_dl.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/Ar_visc_no_atoms.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/in.dielectric_interface.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/in.bar1d_fluids /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/Ar_elastic.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/Ar_liquid.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/conducting_interface.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/dielectric_interface.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/in.shear_flow /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/dielectric.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/in.opp_force /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/poisson.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/double_layer.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/shear_flow.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/Ar_thermal.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/bar1d_fluids.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/shear_no_atoms.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/Ar_species.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/liquid_electrostatic.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/Ar_viscosity.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/in.shear_no_atoms /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/in.liquid_electrostatic /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/in.double_layer /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/fluids/in.poisson /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/eam_volume_stretch.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/in.eam_unistrain_qsphere /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/in.eam_kernel_convergence /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/in.eam_unistrain_cell /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/nvt.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/eam_kernel_convergence.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/in.eam_unistrain_mesh /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/in.eam_volume_stretch /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/eshelby_static.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/in.eshelby_static.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/in.nvt /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/eam_unistrain_mesh.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/in.eam_unistrain_step /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/in.eam_unistrain_qcylinder /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/eam_unistrain_qsphere.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/nvt.data.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/in.consistency /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/eam_unistrain_cell.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/consistency.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/eam_unistrain_step.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/hardy/eam_unistrain_qcylinder.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/two_temperature/restart.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/two_temperature/no_atoms.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/two_temperature/in.cutout /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/two_temperature/uniform_exchange.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/two_temperature/in.bar1d_ttm /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/two_temperature/in.restart.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/two_temperature/bar1d_ttm.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/two_temperature/in.gaussianIC_ttm /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/two_temperature/cutout.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/two_temperature/gaussianIC_ttm.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/two_temperature/Cu_ttm.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/two_temperature/uniform_heating.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/two_temperature/in.uniform_exchange /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/two_temperature/in.no_atoms /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/two_temperature/Ar_ttm.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/two_temperature/in.uniform_heating /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/CNT_electrostatic.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/bar1d_damped.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/Ar_thermo_elastic.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/Ar_CauchyBornLinear.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/in.bar1d_damped /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/no_atoms.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/cnt_fixed_charge.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/Ar_CauchyBorn.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/bar1d_ghost_flux.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/no_atoms_cb.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/bar1d_frac_step.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/CNT.mat.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/in.bar1d_frac_step /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/in.bar1d_ghost_flux /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/Ar_elastic.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/in.electron_density /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/electrostatic_bending_dos.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/Au_elastic.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/cnt_electrostatic.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/in.eam_energy /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/electrostatic_bending.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/bar1d_flux.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/electron_density.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/CNT_electrostatic2.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/Ar_damped.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/in.no_atoms_cb /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/bar1d_thermo_elastic.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/in.bar1d_thermo_elastic.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/in.bar1d /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/in.no_atoms_cb_linear /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/in.bar1d_flux /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/bar1d.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/cnt_electrostatic2.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/eam_energy.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/in.no_atoms /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/CNT_id.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/elastic/no_atoms_cb_linear.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/Si_ddm_schrodinger.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/finite_well.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/poisson2d_noatoms.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/Cu_cddm.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.finite_well /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/Si_ddm_eq.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/SiGe_ddm_schrodinger.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/no_atoms_ddm.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/SiVacuum_ddm_schrodinger.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/ddm_schrodinger.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.poisson2d_noatoms /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/schrodinger-poisson2d_Jconstraint.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.poisson1d_noatoms /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.schrodinger-poisson2d_noatoms.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/CNT_ddm.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.convective_pulse /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/schrodinger-poisson2d_noatoms.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.schrodinger-poisson2d_Jconstraint.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/Si_ddm.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/Si_ddm_thermopower.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.null_material_ddm /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/poisson1d_noatoms.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/null_material_ddm.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/SiVacuum_cddm_schrodinger.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.ddm_schrodinger /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/schrodinger-poisson2d_convective.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.no_atoms_ddm /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/convective_pulse.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.schrodinger-poisson2d_convective.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/drift_diffusion/Ar_ddm.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/cb_unistrain.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.cb_shear /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/cb_biaxial.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/Au_CauchyBorn.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/Ar_CauchyBorn.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/ftcb_constV.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/flying_cube.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.ftcb_constV /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.cb_unistrain /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/cb_unistrain_eam.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.flying_cube /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/cb_volumetric.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/Au_eam.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/cb_unistrain_linear.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.cb_volumetric /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.read_xref /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.cb_biaxial /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.cb_unistrain_eam /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/Ar_CauchyBorn_linear.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.cb_unistrain_eam_linear /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/Cu_CauchyBorn.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/read_xref.screen /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.cb_unistrain_linear /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/cb_unistrain_eam_linear.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/Au_CauchyBorn_linear.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/cb_shear.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/cauchy_born/Au_eam_linear.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/no_atoms.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_interpolate /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_all_atoms.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/bar1d_combined.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/bar1d_frac_step.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/bar1d_hoover.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_frac_step /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/bar1d_all_atoms.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_lumped /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_hoover.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/Ar_thermal.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/bar1d_flux.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_combined /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_flux /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/bar1d.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/bar1d_lumped.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/in.no_atoms /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/bar1d_interpolate.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/molecule/in.polarize /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/molecule/in.quartic_bonds /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/molecule/harmonic_bonds.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/molecule/quartic_bonds.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/molecule/in.harmonic_bonds /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/molecule/in.water /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/molecule/polarize.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/molecule/water.mat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/molecule/water.screen.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/README.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/qtb/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/qtb/alpha_quartz_qtb/alpha_quartz_qtb.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/qtb/alpha_quartz_qbmsst/alpha_quartz_qbmsst.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/qtb/alpha_quartz_qbmsst/alpha_quartz_potential.mod /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/qtb/alpha_quartz_qbmsst/potential_SiO2.TPF.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/qtb/alpha_quartz_qbmsst/alpha_quartz_qtb.mod /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/qtb/methane_qbmsst/methane_qbmsst.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/qtb/methane_qbmsst/ffield.reax.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/qtb/methane_qbmsst/methane_qtb.mod /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/qtb/methane_qtb/methane_qtb.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/USER/qtb/methane_qtb/ffield.reax.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/peptide/log.5Oct16.peptide.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/peptide/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/peptide/in.peptide /<>/debian/lammps-doc/usr/share/doc/lammps/examples/peptide/data.peptide.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/peptide/log.5Oct16.peptide.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/DIFFUSE/in.msd.2d /<>/debian/lammps-doc/usr/share/doc/lammps/examples/DIFFUSE/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/DIFFUSE/log.13Oct16.msd.2d.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/DIFFUSE/in.vacf.2d /<>/debian/lammps-doc/usr/share/doc/lammps/examples/DIFFUSE/log.13Oct16.vacf.2d.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/log.5Oct16.balance.bond.fast.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance.var.dynamic /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/log.5Oct16.balance.neigh.rcb.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance.clock.static /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance.clock.dynamic /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/log.5Oct16.balance.group.static.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/log.5Oct16.balance.var.dynamic.g++.2.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/log.5Oct16.balance.group.dynamic.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance.bond.slow /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/log.5Oct16.balance.clock.static.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/log.5Oct16.balance.bond.slow.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance.bond.fast /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance.group.static /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance.neigh.static /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/log.5Oct16.balance.neigh.dynamic.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance.group.dynamic /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/log.5Oct16.balance.kspace.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/log.5Oct16.balance.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/log.5Oct16.balance.clock.dynamic.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/log.5Oct16.balance.neigh.static.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance.kspace /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance.neigh.rcb /<>/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance.neigh.dynamic /<>/debian/lammps-doc/usr/share/doc/lammps/examples/dipole/log.5Oct16.dipole.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/dipole/log.5Oct16.dipole.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/dipole/in.dipole /<>/debian/lammps-doc/usr/share/doc/lammps/examples/dreiding/log.5Oct16.dreiding.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/dreiding/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/dreiding/ch3oh.box.dreiding.bgf.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/dreiding/ch3oh.box.dreiding.cerius2.eng.dat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/dreiding/in.dreiding /<>/debian/lammps-doc/usr/share/doc/lammps/examples/dreiding/data.dreiding.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/dreiding/log.5Oct16.dreiding.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/streitz/in.streitz.ewald /<>/debian/lammps-doc/usr/share/doc/lammps/examples/streitz/log.5Oct16.streitz.wolf.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/streitz/log.5Oct16.streitz.ewald.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/streitz/in.streitz.wolf /<>/debian/lammps-doc/usr/share/doc/lammps/examples/streitz/AlO.streitz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/streitz/log.5Oct16.streitz.ewald.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/streitz/data.streitz.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/streitz/log.5Oct16.streitz.wolf.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/streitz/AlO.eam.alloy.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/indent/in.indent.min /<>/debian/lammps-doc/usr/share/doc/lammps/examples/indent/log.5Oct16.indent.min.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/indent/log.5Oct16.indent.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/indent/log.5Oct16.indent.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/indent/in.indent /<>/debian/lammps-doc/usr/share/doc/lammps/examples/indent/log.5Oct16.indent.min.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/body/log.5Oct16.body.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/body/log.5Oct16.body.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/body/in.body /<>/debian/lammps-doc/usr/share/doc/lammps/examples/body/data.body.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/melt/in.melt /<>/debian/lammps-doc/usr/share/doc/lammps/examples/melt/log.5Oct16.melt.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/melt/log.5Oct16.melt.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/log.lj.1Feb14.kokkos.cuda.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/log.lj.5.0.1Feb14.gpu.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/log.rhodo.1Feb14.gpu.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/log.lj.5.0.1Feb14.gpu.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/log.phosphate.1Feb14.gpu.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/in.rhodo /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/log.lj.1Feb14.kokkos.omp.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/log.phosphate.1Feb14.gpu.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/log.lj.1Feb14.gpu.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/in.lj.5.0 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/log.lj.1Feb14.kokkos.omp.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/Make.list /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/in.lc /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/log.lj.1Feb14.gpu.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/log.lj.1Feb14.kokkos.cuda.2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/log.rhodo.1Feb14.gpu.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/data.phosphate.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/in.phosphate /<>/debian/lammps-doc/usr/share/doc/lammps/examples/accelerate/in.lj /<>/debian/lammps-doc/usr/share/doc/lammps/examples/qeq/data.aC.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/qeq/param.qeq2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/qeq/log.5Oct16.qeq.reaxc.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/qeq/in.qeq.buck /<>/debian/lammps-doc/usr/share/doc/lammps/examples/qeq/ffield.reax.cho.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/qeq/data.CHO.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/qeq/in.qeq.reaxc /<>/debian/lammps-doc/usr/share/doc/lammps/examples/qeq/param.qeq1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/qeq/param.qeq.reax /<>/debian/lammps-doc/usr/share/doc/lammps/examples/qeq/log.5Oct16.qeq.reaxc.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/qeq/log.5Oct16.qeq.buck.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/qeq/log.5Oct16.qeq.buck.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/tri/log.1Feb14.tri.srd.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/tri/tri.srd.py /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/tri/tri.srd.viz.py /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/tri/data.tri.srd.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/tri/in.tri.srd /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/line/line.viz.py /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/line/line.py /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/line/in.line.srd /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/line/in.line /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/line/log.1Feb14.line.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/line/line.srd.viz.py /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/line/line.srd.py /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/line/log.1Feb14.line.srd.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/line/data.line.srd.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/line/data.line.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/dimer/dimer.py /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/dimer/log.1Feb14.dimer.mp.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/dimer/in.dimer.mp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/dimer/log.1Feb14.dimer.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/dimer/data.dimer.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/dimer/in.dimer /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/README /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/box/box.py /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/box/in.box.mp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/box/data.box.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/box/log.1Feb14.box.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/box/in.box /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/box/log.1Feb14.box.mp.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/poly/log.1Feb14.poly.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/poly/in.poly.mp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/poly/log.1Feb14.poly.mp.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/poly/in.poly /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/star/star.py /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/star/log.1Feb14.star.mp.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/star/in.star.mp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/star/log.1Feb14.star.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/star/data.star.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/star/in.star /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/ellipsoid/log.1Feb14.ellipsoid.mp.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/ellipsoid/in.ellipsoid.mp /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/ellipsoid/in.ellipsoid /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ASPHERE/ellipsoid/log.1Feb14.ellipsoid.g++.8.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/granregion/in.granregion.funnel.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/granregion/log.6Oct16.granregion.mixer.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/granregion/log.6Oct16.granregion.funnel.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/granregion/log.6Oct16.granregion.funnel.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/granregion/in.granregion.box /<>/debian/lammps-doc/usr/share/doc/lammps/examples/granregion/log.6Oct16.granregion.mixer.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/granregion/in.granregion.mixer /<>/debian/lammps-doc/usr/share/doc/lammps/examples/granregion/log.6Oct16.granregion.box.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/granregion/log.6Oct16.granregion.box.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/friction/log.5Oct16.friction.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/friction/in.friction /<>/debian/lammps-doc/usr/share/doc/lammps/examples/friction/log.5Oct16.friction.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/shear/log.5Oct16.shear.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/shear/in.shear /<>/debian/lammps-doc/usr/share/doc/lammps/examples/shear/log.5Oct16.shear.void.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/shear/log.5Oct16.shear.void.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/shear/log.5Oct16.shear.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/shear/in.shear.void /<>/debian/lammps-doc/usr/share/doc/lammps/examples/shear/Ni_u3.eam.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/gcmc/log.30Mar18.gcmc.lj.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/gcmc/log.30Mar18.gcmc.lj.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/gcmc/in.gcmc.h2o /<>/debian/lammps-doc/usr/share/doc/lammps/examples/gcmc/in.gcmc.co2 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/gcmc/H2O.txt /<>/debian/lammps-doc/usr/share/doc/lammps/examples/gcmc/log.30Mar18.gcmc.co2.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/gcmc/log.30Mar18.gcmc.co2.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/gcmc/log.30Mar18.gcmc.h2o.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/gcmc/in.gcmc.lj /<>/debian/lammps-doc/usr/share/doc/lammps/examples/gcmc/log.30Mar18.gcmc.h2o.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/gcmc/CO2.txt /<>/debian/lammps-doc/usr/share/doc/lammps/examples/nb3b/in.nb3b /<>/debian/lammps-doc/usr/share/doc/lammps/examples/nb3b/data.nb3b.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/nb3b/MOH.nb3b.harmonic /<>/debian/lammps-doc/usr/share/doc/lammps/examples/nb3b/log.5Oct16.nb3b.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/nb3b/log.5Oct16.nb3b.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ELASTIC_T/potential.mod /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ELASTIC_T/init.mod /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ELASTIC_T/Si.sw /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ELASTIC_T/in.elastic.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/ELASTIC_T/displace.mod /<>/debian/lammps-doc/usr/share/doc/lammps/examples/latte/log.19Sep17.latte.sucrose.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/latte/latte.in /<>/debian/lammps-doc/usr/share/doc/lammps/examples/latte/log.19Sep17.latte.water.min.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/latte/TBparam/ppots.nonortho /<>/debian/lammps-doc/usr/share/doc/lammps/examples/latte/TBparam/electrons.dat /<>/debian/lammps-doc/usr/share/doc/lammps/examples/latte/TBparam/bondints.nonortho.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/latte/in.latte.water /<>/debian/lammps-doc/usr/share/doc/lammps/examples/latte/data.water /<>/debian/lammps-doc/usr/share/doc/lammps/examples/latte/in.latte.sucrose /<>/debian/lammps-doc/usr/share/doc/lammps/examples/latte/in.latte.water.min /<>/debian/lammps-doc/usr/share/doc/lammps/examples/latte/log.19Sep17.latte.water.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/latte/data.sucrose /<>/debian/lammps-doc/usr/share/doc/lammps/examples/srd/log.5Oct16.srd.pure.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/srd/in.srd.mixture /<>/debian/lammps-doc/usr/share/doc/lammps/examples/srd/log.5Oct16.srd.mixture.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/srd/log.5Oct16.srd.pure.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/srd/in.srd.pure /<>/debian/lammps-doc/usr/share/doc/lammps/examples/srd/log.5Oct16.srd.mixture.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/airebo/log.23Jun17.airebo.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/airebo/log.23Jun17.airebo.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/airebo/log.23Jun17.airebo-m.g++.4 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/airebo/data.airebo /<>/debian/lammps-doc/usr/share/doc/lammps/examples/airebo/in.airebo /<>/debian/lammps-doc/usr/share/doc/lammps/examples/airebo/in.airebo-m /<>/debian/lammps-doc/usr/share/doc/lammps/examples/airebo/log.23Jun17.airebo-m.g++.1 /<>/debian/lammps-doc/usr/share/doc/lammps/examples/micelle/in.micelle /<>/debian/lammps-doc/usr/share/doc/lammps/examples/micelle/log.5Oct16.micelle.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/micelle/def.micelle /<>/debian/lammps-doc/usr/share/doc/lammps/examples/micelle/data.micelle.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/micelle/log.5Oct16.micelle.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/crack/log.5Oct16.crack.g++.4.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/crack/log.5Oct16.crack.g++.1.gz /<>/debian/lammps-doc/usr/share/doc/lammps/examples/crack/in.crack /<>/debian/lammps-doc/usr/share/doc/lammps/examples/README.gz find /<>/debian/lammps-doc/usr/share/doc/lammps/ -type f -print0 | xargs -0 sed -i 's/https:\/\/cdn\.mathjax\.org\/mathjax\/latest/\/usr\/share\/javascript\/mathjax/g' rm -rf /<>/debian/lammps-doc/usr/share/doc/lammps-doc/doc/doc2 make[1]: Leaving directory '/<>' dh_fixperms -Nlammps-doc dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 139 INFO: pkgstriptranslations version 139 INFO: pkgstriptranslations version 139 pkgstriptranslations: processing lammps-dbgsym (in debian/.debhelper/lammps/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing lammps-doc (in debian/lammps-doc); do_strip: , oemstrip: pkgstriptranslations: processing lammps (in debian/lammps); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/lammps/dbgsym-root/DEBIAN/control, package lammps-dbgsym, directory debian/.debhelper/lammps/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package lammps-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'lammps-dbgsym' in 'debian/.debhelper/scratch-space/build-lammps/lammps-dbgsym_0~20180510.gitaa1d815fe-4ubuntu1_amd64.deb'. pkgstripfiles: processing control file: debian/lammps/DEBIAN/control, package lammps, directory debian/lammps pkgstripfiles: Truncating usr/share/doc/lammps/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package lammps ... pkgstripfiles: No PNG files. dpkg-deb: building package 'lammps' in '../lammps_0~20180510.gitaa1d815fe-4ubuntu1_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/lammps-doc/DEBIAN/control, package lammps-doc, directory debian/lammps-doc pkgstripfiles: Truncating usr/share/doc/lammps-doc/changelog.Debian.gz to topmost ten records pkgstripfiles: Disabled PNG optimization for -doc package lammps-doc (to save build time) dpkg-deb: building package 'lammps-doc' in '../lammps-doc_0~20180510.gitaa1d815fe-4ubuntu1_all.deb'. Renaming lammps-dbgsym_0~20180510.gitaa1d815fe-4ubuntu1_amd64.deb to lammps-dbgsym_0~20180510.gitaa1d815fe-4ubuntu1_amd64.ddeb dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../lammps_0~20180510.gitaa1d815fe-4ubuntu1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build lammps-0~20180510.gitaa1d815fe dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180619-1102 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ lammps_0~20180510.gitaa1d815fe-4ubuntu1_amd64.changes: ------------------------------------------------------ Format: 1.8 Date: Tue, 19 Jun 2018 12:54:23 +0200 Source: lammps Binary: lammps lammps-doc Architecture: amd64 all Version: 0~20180510.gitaa1d815fe-4ubuntu1 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: lammps - Molecular Dynamics Simulator lammps-doc - Molecular Dynamics Simulator. Documentation and examples Changes: lammps (0~20180510.gitaa1d815fe-4ubuntu1) cosmic; urgency=medium . * Don't run the autopkg tests on armhf. Checksums-Sha1: 58027d89afbe78ded3ac8b4cdd95b1c1a6c6f2e2 21027388 lammps-dbgsym_0~20180510.gitaa1d815fe-4ubuntu1_amd64.ddeb a36bd02d7be48b73fce25ce9fd15b081c7925656 55184708 lammps-doc_0~20180510.gitaa1d815fe-4ubuntu1_all.deb 8ad19e15f54326bea768e22696030c6c8945bef4 10288 lammps_0~20180510.gitaa1d815fe-4ubuntu1_amd64.buildinfo bc09794972a6d6eeacda92f531ec18769ffbe474 4008224 lammps_0~20180510.gitaa1d815fe-4ubuntu1_amd64.deb Checksums-Sha256: f64e1605729147ffde874033779e1a8a85e6967a08cd86f19a6444b2839a65cc 21027388 lammps-dbgsym_0~20180510.gitaa1d815fe-4ubuntu1_amd64.ddeb 91382d67e1e64cab1572213b8181b351620cbe759b6a6a971e05e7beae6ffaec 55184708 lammps-doc_0~20180510.gitaa1d815fe-4ubuntu1_all.deb 9dd8482f5f6cf0bb27d00e5ae2ba19df93bf5a51f0ef42e843fc2e5e43555c33 10288 lammps_0~20180510.gitaa1d815fe-4ubuntu1_amd64.buildinfo 9d5057317798959fcd7572b55839b5fdaf74a94903ee3731358bf4c75b69f5da 4008224 lammps_0~20180510.gitaa1d815fe-4ubuntu1_amd64.deb Files: d8c1feb7ba20215415ee4af7de939897 21027388 debug optional lammps-dbgsym_0~20180510.gitaa1d815fe-4ubuntu1_amd64.ddeb 3a728e9b7cbdc50355b2b2088ed70922 55184708 doc optional lammps-doc_0~20180510.gitaa1d815fe-4ubuntu1_all.deb 83c3b9ce11d2443db6781e2bc97e4705 10288 science optional lammps_0~20180510.gitaa1d815fe-4ubuntu1_amd64.buildinfo ddbaed59477e7fac3e3eec004169f74c 4008224 science optional lammps_0~20180510.gitaa1d815fe-4ubuntu1_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ lammps-doc_0~20180510.gitaa1d815fe-4ubuntu1_all.deb --------------------------------------------------- new debian package, version 2.0. size 55184708 bytes: control archive=64424 bytes. 1170 bytes, 25 lines control 241086 bytes, 2677 lines md5sums Package: lammps-doc Source: lammps Version: 0~20180510.gitaa1d815fe-4ubuntu1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 64669 Depends: libjs-mathjax, libjs-jquery, libjs-underscore Section: doc Priority: optional Homepage: http://lammps.sandia.gov/ Description: Molecular Dynamics Simulator. Documentation and examples LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. . LAMMPS has potentials for soft materials (biomolecules, polymers) and solid-state materials (metals, semiconductors) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale. . LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. The code is designed to be easy to modify or extend with new functionality. . The package contains documentation and examples. drwxr-xr-x root/root 0 2018-06-19 10:54 ./ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc-base/ -rw-r--r-- root/root 347 2018-05-10 20:57 ./usr/share/doc-base/lammps drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps-doc/ -rw-r--r-- root/root 981 2018-06-19 10:54 ./usr/share/doc/lammps-doc/changelog.Debian.gz -rw-r--r-- root/root 15474 2016-11-12 06:38 ./usr/share/doc/lammps-doc/copyright drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps-doc/doc/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps-doc/doc/_static/ lrwxrwxrwx root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps-doc/doc/_static/jquery.js -> ../../../../javascript/jquery/jquery.js lrwxrwxrwx root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps-doc/doc/_static/underscore.js -> ../../../../javascript/underscore/underscore.js drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/ -rw-r--r-- root/root 132485 2018-06-19 10:54 ./usr/share/doc/lammps/Developer.pdf.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/ -rw-r--r-- root/root 3932 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/angle_charmm.jpg -rw-r--r-- root/root 16202 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/angle_class2.jpg -rw-r--r-- root/root 13873 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/angle_class2_p6.jpg -rw-r--r-- root/root 2380 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/angle_cosine.jpg -rw-r--r-- root/root 5374 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/angle_cosine_buck6d.jpg -rw-r--r-- root/root 2576 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/angle_cosine_delta.jpg -rw-r--r-- root/root 3362 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/angle_cosine_periodic.jpg -rw-r--r-- root/root 3933 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/angle_cosine_shift.jpg -rw-r--r-- root/root 7884 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/angle_cosine_shift_exp.jpg -rw-r--r-- root/root 3265 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/angle_cosine_squared.jpg -rw-r--r-- root/root 2930 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/angle_dipole_couple.jpg -rw-r--r-- root/root 2709 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/angle_dipole_gamma.jpg -rw-r--r-- root/root 2616 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/angle_dipole_potential.jpg -rw-r--r-- root/root 5110 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/angle_dipole_torque.jpg -rw-r--r-- root/root 4618 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/angle_fourier.jpg -rw-r--r-- root/root 2761 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/angle_fourier_simple.jpg -rw-r--r-- root/root 2005 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/angle_harmonic.jpg -rw-r--r-- root/root 5273 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/angle_quartic.jpg -rw-r--r-- root/root 5142 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/bond_class2.jpg -rw-r--r-- root/root 8322 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/bond_fene.jpg -rw-r--r-- root/root 11506 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/bond_fene_expand.jpg -rw-r--r-- root/root 2161 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/bond_gromos.jpg -rw-r--r-- root/root 1861 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/bond_harmonic.jpg -rw-r--r-- root/root 5078 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/bond_harmonic_shift.jpg -rw-r--r-- root/root 5184 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/bond_harmonic_shift_cut.jpg -rw-r--r-- root/root 2509 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/bond_morse.jpg -rw-r--r-- root/root 3593 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/bond_nonlinear.jpg -rw-r--r-- root/root 3866 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/bond_oxdna_fene.jpg -rw-r--r-- root/root 9554 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/bond_quartic.jpg -rw-r--r-- root/root 11093 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/box.jpg -rw-r--r-- root/root 10250 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/box_inverse.jpg -rw-r--r-- root/root 4111 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/centro_symmetry.jpg -rw-r--r-- root/root 13431 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/cna_cutoff1.jpg -rw-r--r-- root/root 2518 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/cna_cutoff2.jpg -rw-r--r-- root/root 13431 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/cnp_cutoff.jpg -rw-r--r-- root/root 2518 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/cnp_cutoff2.jpg -rw-r--r-- root/root 23959 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/cnp_eq.jpg -rw-r--r-- root/root 21381 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_dpd.jpg -rw-r--r-- root/root 18106 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_fep_bar.jpg -rw-r--r-- root/root 15544 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_fep_fdti.jpg -rw-r--r-- root/root 18055 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_fep_fep.jpg -rw-r--r-- root/root 10511 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_fep_lambda.jpg -rw-r--r-- root/root 18149 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_fep_ti.jpg -rw-r--r-- root/root 9337 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_fep_u.jpg -rw-r--r-- root/root 15209 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_fep_vol.jpg -rw-r--r-- root/root 3658 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_gyration.jpg -rw-r--r-- root/root 7277 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_msd_nongauss.jpg -rw-r--r-- root/root 1471 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_saed1.jpg -rw-r--r-- root/root 4911 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_saed2.jpg -rw-r--r-- root/root 7048 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_saed3.jpg -rw-r--r-- root/root 19001 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_sna_atom1.jpg -rw-r--r-- root/root 17114 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_sna_atom2.jpg -rw-r--r-- root/root 19644 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_sna_atom3.jpg -rw-r--r-- root/root 35933 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_sna_atom4.jpg -rw-r--r-- root/root 14734 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_sna_atom5.jpg -rw-r--r-- root/root 17274 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_sna_atom6.jpg -rw-r--r-- root/root 2363 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_xrd1.jpg -rw-r--r-- root/root 4778 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_xrd2.jpg -rw-r--r-- root/root 4745 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_xrd3.jpg -rw-r--r-- root/root 2278 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_xrd4.jpg -rw-r--r-- root/root 7603 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/compute_xrd5.jpg -rw-r--r-- root/root 3118 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/dihedral_charmm.jpg -rw-r--r-- root/root 47795 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/dihedral_class2.jpg -rw-r--r-- root/root 8004 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/dihedral_cosine_shift_exp.jpg -rw-r--r-- root/root 4544 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/dihedral_fourier.jpg -rw-r--r-- root/root 2937 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/dihedral_harmonic.jpg -rw-r--r-- root/root 6810 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/dihedral_helix.jpg -rw-r--r-- root/root 3103 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/dihedral_multi_harmonic.jpg -rw-r--r-- root/root 3231 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/dihedral_nharmonic.jpg -rw-r--r-- root/root 10755 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/dihedral_opls.jpg -rw-r--r-- root/root 2067 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/dihedral_quadratic.jpg -rw-r--r-- root/root 14432 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/dihedral_spherical.jpg -rw-r--r-- root/root 21369 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/dreiding_hbond.jpg -rw-r--r-- root/root 5146 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/eff_ECP1.jpg -rw-r--r-- root/root 9744 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/eff_ECP2.jpg -rw-r--r-- root/root 3385 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/eff_KE.jpg -rw-r--r-- root/root 4153 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/eff_NN.jpg -rw-r--r-- root/root 6425 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/eff_Ne.jpg -rw-r--r-- root/root 5676 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/eff_Pauli.jpg -rw-r--r-- root/root 6829 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/eff_ee.jpg -rw-r--r-- root/root 9538 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/eff_energy_expression.jpg -rw-r--r-- root/root 3375 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_box_relax1.jpg -rw-r--r-- root/root 3029 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_box_relax2.jpg -rw-r--r-- root/root 4832 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_controller1.jpg -rw-r--r-- root/root 5571 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_controller2.jpg -rw-r--r-- root/root 3272 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_ehex_eom.jpg -rw-r--r-- root/root 10352 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_ehex_f.jpg -rw-r--r-- root/root 3016 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_eos-cv.jpg -rw-r--r-- root/root 17367 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_eos_table_rx.jpg -rw-r--r-- root/root 5617 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_gcmc1.jpg -rw-r--r-- root/root 10626 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_gcmc2.jpg -rw-r--r-- root/root 7437 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_gcmc3.jpg -rw-r--r-- root/root 14274 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_gld1.jpg -rw-r--r-- root/root 6224 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_grem.jpg -rw-r--r-- root/root 4643 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_lb_fluid_boltzmann.jpg -rw-r--r-- root/root 2358 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_lb_fluid_fluidforce.jpg -rw-r--r-- root/root 4793 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_lb_fluid_gammadefault.jpg -rw-r--r-- root/root 9311 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_lb_fluid_navierstokes.jpg -rw-r--r-- root/root 3471 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_lb_fluid_properties.jpg -rw-r--r-- root/root 2530 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_lb_fluid_stress.jpg -rw-r--r-- root/root 6522 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_lb_fluid_viscosity.jpg -rw-r--r-- root/root 26880 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_mvv_dpd.jpg -rw-r--r-- root/root 68243 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_nh1.jpg -rw-r--r-- root/root 7506 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_nphug.jpg -rw-r--r-- root/root 26005 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_orient_fcc.jpg -rw-r--r-- root/root 14569 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_pimd.jpg -rw-r--r-- root/root 4556 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_rattle_constraints.jpg -rw-r--r-- root/root 1812 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_rattle_rij.jpg -rw-r--r-- root/root 18330 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_rhok.jpg -rw-r--r-- root/root 2427 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_rx.jpg -rw-r--r-- root/root 16562 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_rx_localTemp.jpg -rw-r--r-- root/root 16284 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_rx_localTemp2.jpg -rw-r--r-- root/root 2896 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_rx_reaction.jpg -rw-r--r-- root/root 2939 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_rx_reactionRate.jpg -rw-r--r-- root/root 16204 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_spring_rg.jpg -rw-r--r-- root/root 2673 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_ti_spring_force.jpg -rw-r--r-- root/root 1173 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_ti_spring_function_1.jpg -rw-r--r-- root/root 5662 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_ti_spring_function_2.jpg -rw-r--r-- root/root 5869 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_ttm.jpg -rw-r--r-- root/root 4449 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_ttm_blast.jpg -rw-r--r-- root/root 8657 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_ttm_blast1.jpg -rw-r--r-- root/root 7446 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_ttm_ce.jpg -rw-r--r-- root/root 10179 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_ttm_mod.jpg -rw-r--r-- root/root 17879 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_wall_colloid.jpg -rw-r--r-- root/root 106786 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_wall_ees.jpg -rw-r--r-- root/root 2413 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_wall_harmonic.jpg -rw-r--r-- root/root 10996 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_wall_lj1043.jpg -rw-r--r-- root/root 4883 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fix_wall_lj93.jpg -rw-r--r-- root/root 3640 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fld.jpg -rw-r--r-- root/root 4161 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/fld2.jpg -rw-r--r-- root/root 15205 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/heat_flux_J.jpg -rw-r--r-- root/root 8760 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/heat_flux_k.jpg -rw-r--r-- root/root 16870 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/hexorder.jpg -rw-r--r-- root/root 15728 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/improper_class2.jpg -rw-r--r-- root/root 2995 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/improper_cossq.jpg -rw-r--r-- root/root 2826 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/improper_cvff.jpg -rw-r--r-- root/root 2169 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/improper_dist-1.jpg -rw-r--r-- root/root 4746 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/improper_fourier.jpg -rw-r--r-- root/root 2005 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/improper_harmonic.jpg -rw-r--r-- root/root 4649 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/improper_inversion_harmonic.jpg -rw-r--r-- root/root 11101 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/improper_ring.jpg -rw-r--r-- root/root 9598 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/improper_umbrella.jpg -rw-r--r-- root/root 19599 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/min_energy.jpg -rw-r--r-- root/root 34695 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/orientorder.jpg -rw-r--r-- root/root 20391 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_adp.jpg -rw-r--r-- root/root 15178 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_agni.jpg -rw-r--r-- root/root 9380 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_airebo.jpg -rw-r--r-- root/root 9451 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_beck.jpg -rw-r--r-- root/root 13202 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_bop.jpg -rw-r--r-- root/root 5099 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_born.jpg -rw-r--r-- root/root 2861 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_buck.jpg -rw-r--r-- root/root 7074 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_buck6d.jpg -rw-r--r-- root/root 25138 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_charmm.jpg -rw-r--r-- root/root 5093 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_class2.jpg -rw-r--r-- root/root 11921 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_cmm.jpg -rw-r--r-- root/root 43501 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_colloid_cc.jpg -rw-r--r-- root/root 11599 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_colloid_cs.jpg -rw-r--r-- root/root 5573 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_colloid_ss.jpg -rw-r--r-- root/root 18596 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_comb1.jpg -rw-r--r-- root/root 39601 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_comb2.jpg -rw-r--r-- root/root 10587 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_coul_diel.jpg -rw-r--r-- root/root 12261 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_coul_dsf.jpg -rw-r--r-- root/root 7224 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_coul_gauss.jpg -rw-r--r-- root/root 190818 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_coul_shield.jpg -rw-r--r-- root/root 11309 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_coul_soft.jpg -rw-r--r-- root/root 8758 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_coul_wolf.jpg -rw-r--r-- root/root 2505 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_coulomb.jpg -rw-r--r-- root/root 3500 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_cs.jpg -rw-r--r-- root/root 3641 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_debye.jpg -rw-r--r-- root/root 47516 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_dipole.jpg -rw-r--r-- root/root 93270 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_dipole_sf.jpg -rw-r--r-- root/root 40855 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_dipole_sf2.jpg -rw-r--r-- root/root 12376 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_dpd.jpg -rw-r--r-- root/root 25636 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_dpd_energy.jpg -rw-r--r-- root/root 8883 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_dpd_energy_terms.jpg -rw-r--r-- root/root 1689 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_dpd_omega.jpg -rw-r--r-- root/root 6693 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_eam.jpg -rw-r--r-- root/root 6547 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_eam_fs.jpg -rw-r--r-- root/root 42939 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_edip.jpg -rw-r--r-- root/root 32395 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_edpd_force.jpg -rw-r--r-- root/root 17725 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_edpd_gov.jpg -rw-r--r-- root/root 46952 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_edpd_heat.jpg -rw-r--r-- root/root 5626 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_edpd_kappa.jpg -rw-r--r-- root/root 6824 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_eim1.jpg -rw-r--r-- root/root 8494 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_eim2.jpg -rw-r--r-- root/root 40993 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_eim3.jpg -rw-r--r-- root/root 9372 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_exp6_rx.jpg -rw-r--r-- root/root 16062 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_exp6_rx_oneFluid.jpg -rw-r--r-- root/root 7629 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_exp6_rx_oneFluid2.jpg -rw-r--r-- root/root 2835 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_gauss.jpg -rw-r--r-- root/root 3855 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_gauss_cut.jpg -rw-r--r-- root/root 13814 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_gayberne.jpg -rw-r--r-- root/root 4203 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_gayberne2.jpg -rw-r--r-- root/root 12512 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_gran_hertz.jpg -rw-r--r-- root/root 5737 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_gran_hooke.jpg -rw-r--r-- root/root 50447 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_gromacs.jpg -rw-r--r-- root/root 32047 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_hbond_dreiding.jpg -rw-r--r-- root/root 308212 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_ilp_graphene_hbn.jpg -rw-r--r-- root/root 181806 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_kolmogorov_crespi_full.jpg -rw-r--r-- root/root 18223 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_kolmogorov_crespi_z.jpg -rw-r--r-- root/root 4547 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_lj.jpg -rw-r--r-- root/root 4851 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_lj96.jpg -rw-r--r-- root/root 9352 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_lj_cubic.jpg -rw-r--r-- root/root 5905 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_lj_expand.jpg -rw-r--r-- root/root 11580 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_lj_smooth.jpg -rw-r--r-- root/root 10372 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_lj_smooth_linear.jpg -rw-r--r-- root/root 17984 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_lj_soft.jpg -rw-r--r-- root/root 14321 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_lubricate.jpg -rw-r--r-- root/root 3128 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_mdf-1.jpg -rw-r--r-- root/root 10104 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_mdf-2.jpg -rw-r--r-- root/root 2847 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_mdf-3.jpg -rw-r--r-- root/root 3909 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_mdf-4.jpg -rw-r--r-- root/root 2685 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_mdf-5.jpg -rw-r--r-- root/root 2407 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_mdf-6.jpg -rw-r--r-- root/root 19465 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_mdpd_force.jpg -rw-r--r-- root/root 6110 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_meam.jpg -rw-r--r-- root/root 21186 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_meam_spline.jpg -rw-r--r-- root/root 22975 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_meam_spline_multicomponent.jpg -rw-r--r-- root/root 17215 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_meam_sw_spline.jpg -rw-r--r-- root/root 12874 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_mgpt.jpg -rw-r--r-- root/root 4686 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_mie.jpg -rw-r--r-- root/root 6502 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_mie2.jpg -rw-r--r-- root/root 17831 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_momb.jpg -rw-r--r-- root/root 4042 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_morse.jpg -rw-r--r-- root/root 9935 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_morse_smooth_linear.jpg -rw-r--r-- root/root 20988 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_morse_soft.jpg -rw-r--r-- root/root 18222 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_multi_lucy.jpg -rw-r--r-- root/root 16516 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_multi_lucy2.jpg -rw-r--r-- root/root 15425 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_multi_lucy_energy.jpg -rw-r--r-- root/root 1918 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_nb3b_harmonic.jpg -rw-r--r-- root/root 6304 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_nm.jpg -rw-r--r-- root/root 2683 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_resquared.jpg -rw-r--r-- root/root 2303 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_resquared2.jpg -rw-r--r-- root/root 1156 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_resquared3.jpg -rw-r--r-- root/root 4779 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_resquared4.jpg -rw-r--r-- root/root 27807 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_smtbq1.jpg -rw-r--r-- root/root 15544 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_smtbq2.jpg -rw-r--r-- root/root 6832 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_smtbq3.jpg -rw-r--r-- root/root 32505 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_snap.jpg -rw-r--r-- root/root 4085 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_soft.jpg -rw-r--r-- root/root 1540 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_sph_ideal.jpg -rw-r--r-- root/root 2303 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_sph_tait.jpg -rw-r--r-- root/root 3537 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_srp1.jpg -rw-r--r-- root/root 5648 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_srp2.jpg -rw-r--r-- root/root 28707 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_sw.jpg -rw-r--r-- root/root 22023 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_tdpd_flux.jpg -rw-r--r-- root/root 25842 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_tdpd_force.jpg -rw-r--r-- root/root 18141 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_tdpd_gov.jpg -rw-r--r-- root/root 36139 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_tersoff.jpg -rw-r--r-- root/root 36584 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_tersoff_1.jpg -rw-r--r-- root/root 13756 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_tersoff_2.jpg -rw-r--r-- root/root 91727 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_tersoff_mod.jpg -rw-r--r-- root/root 4211 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_tersoff_mod_c.jpg -rw-r--r-- root/root 392677 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_tersoff_zbl.jpg -rw-r--r-- root/root 17830 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_ufm.jpg -rw-r--r-- root/root 73306 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_vashishta.jpg -rw-r--r-- root/root 2189 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_yukawa.jpg -rw-r--r-- root/root 3067 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_yukawa_colloid.jpg -rw-r--r-- root/root 32209 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pair_zbl.jpg -rw-r--r-- root/root 9186 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/polymorphic1.jpg -rw-r--r-- root/root 7156 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/polymorphic2.jpg -rw-r--r-- root/root 2425 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/polymorphic3.jpg -rw-r--r-- root/root 27028 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/polymorphic4.jpg -rw-r--r-- root/root 30052 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/polymorphic5.jpg -rw-r--r-- root/root 9063 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/polymorphic6.jpg -rw-r--r-- root/root 58111 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/polymorphic7.jpg -rw-r--r-- root/root 10249 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/polymorphic8.jpg -rw-r--r-- root/root 13704 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/polymorphic9.jpg -rw-r--r-- root/root 4333 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pressure.jpg -rw-r--r-- root/root 5457 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/pressure_tensor.jpg -rw-r--r-- root/root 17991 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/rotate.jpg -rw-r--r-- root/root 22403 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/stress_tensor.jpg -rw-r--r-- root/root 60790 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/transform.jpg -rw-r--r-- root/root 20442 2018-06-19 10:54 ./usr/share/doc/lammps/Eqs/umbrella.jpg drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/ -rw-r--r-- root/root 13402 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/atc_nanotube.jpg -rw-r--r-- root/root 78857 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/balance_nonuniform.jpg -rw-r--r-- root/root 16588 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/balance_nonuniform_small.jpg -rw-r--r-- root/root 72941 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/balance_rcb.jpg -rw-r--r-- root/root 15571 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/balance_rcb_small.jpg -rw-r--r-- root/root 79281 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/balance_uniform.jpg -rw-r--r-- root/root 17279 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/balance_uniform_small.jpg -rw-r--r-- root/root 10548 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/bondswap.jpg -rw-r--r-- root/root 32369 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/bow_tutorial_01.png -rw-r--r-- root/root 15622 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/bow_tutorial_01_small.png -rw-r--r-- root/root 41783 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/bow_tutorial_02.png -rw-r--r-- root/root 16710 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/bow_tutorial_02_small.png -rw-r--r-- root/root 43023 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/bow_tutorial_03.png -rw-r--r-- root/root 20184 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/bow_tutorial_03_small.png -rw-r--r-- root/root 54811 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/bow_tutorial_04.png -rw-r--r-- root/root 21248 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/bow_tutorial_04_small.png -rw-r--r-- root/root 15987 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/bow_tutorial_05.png -rw-r--r-- root/root 13578 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/bow_tutorial_06.png -rw-r--r-- root/root 9934 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/bow_tutorial_07.png -rw-r--r-- root/root 24088 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/bow_tutorial_08.png -rw-r--r-- root/root 18057 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/bow_tutorial_09.png -rw-r--r-- root/root 7831 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/bow_tutorial_10.png -rw-r--r-- root/root 12676 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/coul_soft.jpg -rw-r--r-- root/root 23845 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/dihedral_sign.jpg -rw-r--r-- root/root 25519 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/dihedral_spherical_angles.jpg -rw-r--r-- root/root 608016 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/dump1.jpg -rw-r--r-- root/root 16529 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/dump1_small.jpg -rw-r--r-- root/root 172441 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/dump2.jpg -rw-r--r-- root/root 6506 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/dump2_small.jpg -rw-r--r-- root/root 15776 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/examples_edpd.jpg -rw-r--r-- root/root 916813 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/examples_mdpd.gif -rw-r--r-- root/root 115446 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/examples_mdpd_first.jpg -rw-r--r-- root/root 38463 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/examples_mdpd_last.jpg -rw-r--r-- root/root 10789 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/examples_tdpd.jpg -rw-r--r-- root/root 6013 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/fix_wall_ees_image.jpg -rw-r--r-- root/root 119645 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/gran_funnel.png -rw-r--r-- root/root 2266 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/gran_funnel_small.jpg -rw-r--r-- root/root 229532 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/gran_mixer.png -rw-r--r-- root/root 3053 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/gran_mixer_small.jpg -rw-r--r-- root/root 52996 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/hop1.jpg -rw-r--r-- root/root 4302 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/hop1_small.jpg -rw-r--r-- root/root 53149 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/hop2.jpg -rw-r--r-- root/root 4214 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/hop2_small.jpg -rw-r--r-- root/root 9687 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/improper_distance.jpg -rw-r--r-- root/root 4900 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/lammps-logo.png -rw-r--r-- root/root 12313 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/lj_soft.jpg -rw-r--r-- root/root 12755 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/offload_knc.png -rw-r--r-- root/root 29560 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/pimd.jpg -rw-r--r-- root/root 72128 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/pylammps_dihedral.jpg -rw-r--r-- root/root 106830 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/pylammps_mc_disordered.jpg -rw-r--r-- root/root 54576 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/pylammps_mc_energies_plot.jpg -rw-r--r-- root/root 113894 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/pylammps_mc_minimum.jpg -rw-r--r-- root/root 38407 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/qbmsst_init.jpg -rw-r--r-- root/root 79334 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/qbmsst_shock.jpg -rw-r--r-- root/root 42303 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/rhodo_staggered.jpg -rw-r--r-- root/root 112619 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/saed_ewald_intersect.jpg -rw-r--r-- root/root 41372 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/saed_ewald_intersect_small.jpg -rw-r--r-- root/root 110946 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/saed_mesh.jpg -rw-r--r-- root/root 43053 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/saed_mesh_small.jpg -rw-r--r-- root/root 426608 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/screenshot_atomeye.jpg -rw-r--r-- root/root 7498 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/screenshot_atomeye_small.jpg -rw-r--r-- root/root 306252 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/screenshot_gl.jpg -rw-r--r-- root/root 5875 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/screenshot_gl_small.jpg -rw-r--r-- root/root 417093 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/screenshot_pymol.jpg -rw-r--r-- root/root 7660 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/screenshot_pymol_small.jpg -rw-r--r-- root/root 327211 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/screenshot_vmd.jpg -rw-r--r-- root/root 6787 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/screenshot_vmd_small.jpg -rw-r--r-- root/root 128596 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/sinusoid.jpg -rw-r--r-- root/root 29397 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/sinusoid_small.jpg -rw-r--r-- root/root 21572 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_additional_changes.png -rw-r--r-- root/root 101773 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_automated_checks.png -rw-r--r-- root/root 31053 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_automated_checks_passed.png -rw-r--r-- root/root 16567 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_branch.png -rw-r--r-- root/root 19470 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_changes_others.png -rw-r--r-- root/root 52576 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_create_new_pull_request1.png -rw-r--r-- root/root 35119 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_create_new_pull_request2.png -rw-r--r-- root/root 13619 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_edits_maintainers.png -rw-r--r-- root/root 15243 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_fork.png -rw-r--r-- root/root 71654 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_https_block.png -rw-r--r-- root/root 25938 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_merged.png -rw-r--r-- root/root 19578 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_new_pull_request.png -rw-r--r-- root/root 15019 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_pull_request2.png -rw-r--r-- root/root 27736 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_pull_request3.png -rw-r--r-- root/root 88565 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_pull_request4.png -rw-r--r-- root/root 21596 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_pull_request_feature_branch1.png -rw-r--r-- root/root 28019 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_reverse_pull_request.png -rw-r--r-- root/root 79764 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_reverse_pull_request2.png -rw-r--r-- root/root 78391 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_reverse_pull_request3.png -rw-r--r-- root/root 106204 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_reverse_pull_request4.png -rw-r--r-- root/root 37946 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_reverse_pull_request5.png -rw-r--r-- root/root 6393 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_reverse_pull_request6.png -rw-r--r-- root/root 26032 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_reverse_pull_request7.png -rw-r--r-- root/root 46420 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/tutorial_steve_assignee.png -rw-r--r-- root/root 12271 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/uef_frames.jpg -rw-r--r-- root/root 19528 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/user_intel.png -rw-r--r-- root/root 121055 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/xrd_mesh.jpg -rw-r--r-- root/root 46491 2018-06-19 10:54 ./usr/share/doc/lammps/JPG/xrd_mesh_small.jpg -rw-r--r-- root/root 12186 2018-06-19 10:54 ./usr/share/doc/lammps/Manual.html drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/PDF/ -rw-r--r-- root/root 62520 2018-06-19 10:54 ./usr/share/doc/lammps/PDF/PDLammps_EPS.pdf.gz -rw-r--r-- root/root 60016 2018-06-19 10:54 ./usr/share/doc/lammps/PDF/PDLammps_VES.pdf.gz -rw-r--r-- root/root 251851 2018-06-19 10:54 ./usr/share/doc/lammps/PDF/PDLammps_overview.pdf.gz -rw-r--r-- root/root 3332463 2018-06-19 10:54 ./usr/share/doc/lammps/PDF/SMD_LAMMPS_userguide.pdf.gz -rw-r--r-- root/root 2421615 2018-06-19 10:54 ./usr/share/doc/lammps/PDF/SPH_LAMMPS_userguide.pdf.gz -rw-r--r-- root/root 3349104 2018-06-19 10:54 ./usr/share/doc/lammps/PDF/USER-CGDNA.pdf.gz -rw-r--r-- root/root 574799 2018-06-19 10:54 ./usr/share/doc/lammps/PDF/colvars-refman-lammps.pdf.gz -rw-r--r-- root/root 133257 2018-06-19 10:54 ./usr/share/doc/lammps/PDF/kspace.pdf.gz -rw-r--r-- root/root 48596 2018-06-19 10:54 ./usr/share/doc/lammps/PDF/pair_gayberne_extra.pdf.gz -rw-r--r-- root/root 1868 2018-06-19 10:54 ./usr/share/doc/lammps/PDF/pair_gayberne_extra.tex.gz -rw-r--r-- root/root 47687 2018-06-19 10:54 ./usr/share/doc/lammps/PDF/pair_resquared_extra.pdf.gz -rw-r--r-- root/root 3700 2018-06-19 10:54 ./usr/share/doc/lammps/PDF/pair_resquared_extra.tex -rw-r--r-- root/root 19459 2018-06-19 10:54 ./usr/share/doc/lammps/Section_accelerate.html -rw-r--r-- root/root 66539 2018-06-19 10:54 ./usr/share/doc/lammps/Section_commands.html -rw-r--r-- root/root 339409 2018-06-19 10:54 ./usr/share/doc/lammps/Section_errors.html -rw-r--r-- root/root 8898 2018-06-19 10:54 ./usr/share/doc/lammps/Section_example.html -rw-r--r-- root/root 5339 2018-06-19 10:54 ./usr/share/doc/lammps/Section_history.html -rw-r--r-- root/root 149140 2018-06-19 10:54 ./usr/share/doc/lammps/Section_howto.html -rw-r--r-- root/root 26967 2018-06-19 10:54 ./usr/share/doc/lammps/Section_intro.html -rw-r--r-- root/root 46795 2018-06-19 10:54 ./usr/share/doc/lammps/Section_modify.html -rw-r--r-- root/root 113644 2018-06-19 10:54 ./usr/share/doc/lammps/Section_packages.html -rw-r--r-- root/root 4217 2018-06-19 10:54 ./usr/share/doc/lammps/Section_perf.html -rw-r--r-- root/root 39286 2018-06-19 10:54 ./usr/share/doc/lammps/Section_python.html -rw-r--r-- root/root 86270 2018-06-19 10:54 ./usr/share/doc/lammps/Section_start.html -rw-r--r-- root/root 19137 2018-06-19 10:54 ./usr/share/doc/lammps/Section_tools.html -rw-r--r-- root/root 11634 2018-06-19 10:54 ./usr/share/doc/lammps/accelerate_gpu.html -rw-r--r-- root/root 27954 2018-06-19 10:54 ./usr/share/doc/lammps/accelerate_intel.html -rw-r--r-- root/root 23926 2018-06-19 10:54 ./usr/share/doc/lammps/accelerate_kokkos.html -rw-r--r-- root/root 8960 2018-06-19 10:54 ./usr/share/doc/lammps/accelerate_omp.html -rw-r--r-- root/root 2390 2018-06-19 10:54 ./usr/share/doc/lammps/accelerate_opt.html -rw-r--r-- root/root 3224 2018-06-19 10:54 ./usr/share/doc/lammps/angle_charmm.html -rw-r--r-- root/root 4872 2018-06-19 10:54 ./usr/share/doc/lammps/angle_class2.html -rw-r--r-- root/root 4238 2018-06-19 10:54 ./usr/share/doc/lammps/angle_coeff.html -rw-r--r-- root/root 2483 2018-06-19 10:54 ./usr/share/doc/lammps/angle_cosine.html -rw-r--r-- root/root 2244 2018-06-19 10:54 ./usr/share/doc/lammps/angle_cosine_buck6d.html -rw-r--r-- root/root 2788 2018-06-19 10:54 ./usr/share/doc/lammps/angle_cosine_delta.html -rw-r--r-- root/root 3313 2018-06-19 10:54 ./usr/share/doc/lammps/angle_cosine_periodic.html -rw-r--r-- root/root 2768 2018-06-19 10:54 ./usr/share/doc/lammps/angle_cosine_shift.html -rw-r--r-- root/root 3402 2018-06-19 10:54 ./usr/share/doc/lammps/angle_cosine_shift_exp.html -rw-r--r-- root/root 2730 2018-06-19 10:54 ./usr/share/doc/lammps/angle_cosine_squared.html -rw-r--r-- root/root 4963 2018-06-19 10:54 ./usr/share/doc/lammps/angle_dipole.html -rw-r--r-- root/root 2489 2018-06-19 10:54 ./usr/share/doc/lammps/angle_fourier.html -rw-r--r-- root/root 2513 2018-06-19 10:54 ./usr/share/doc/lammps/angle_fourier_simple.html -rw-r--r-- root/root 2836 2018-06-19 10:54 ./usr/share/doc/lammps/angle_harmonic.html -rw-r--r-- root/root 3428 2018-06-19 10:54 ./usr/share/doc/lammps/angle_hybrid.html -rw-r--r-- root/root 919 2018-06-19 10:54 ./usr/share/doc/lammps/angle_none.html -rw-r--r-- root/root 2816 2018-06-19 10:54 ./usr/share/doc/lammps/angle_quartic.html -rw-r--r-- root/root 2046 2018-06-19 10:54 ./usr/share/doc/lammps/angle_sdk.html -rw-r--r-- root/root 4133 2018-06-19 10:54 ./usr/share/doc/lammps/angle_style.html -rw-r--r-- root/root 6954 2018-06-19 10:54 ./usr/share/doc/lammps/angle_table.html -rw-r--r-- root/root 1604 2018-06-19 10:54 ./usr/share/doc/lammps/angle_zero.html -rw-r--r-- root/root 59 2018-06-19 10:54 ./usr/share/doc/lammps/angles.html -rw-r--r-- root/root 9149 2018-06-19 10:54 ./usr/share/doc/lammps/atom_modify.html -rw-r--r-- root/root 17354 2018-06-19 10:54 ./usr/share/doc/lammps/atom_style.html -rw-r--r-- root/root 27276 2018-06-19 10:54 ./usr/share/doc/lammps/balance.html -rw-r--r-- root/root 12747 2018-06-19 10:54 ./usr/share/doc/lammps/body.html -rw-r--r-- root/root 2851 2018-06-19 10:54 ./usr/share/doc/lammps/bond_class2.html -rw-r--r-- root/root 3975 2018-06-19 10:54 ./usr/share/doc/lammps/bond_coeff.html -rw-r--r-- root/root 3318 2018-06-19 10:54 ./usr/share/doc/lammps/bond_fene.html -rw-r--r-- root/root 3487 2018-06-19 10:54 ./usr/share/doc/lammps/bond_fene_expand.html -rw-r--r-- root/root 2604 2018-06-19 10:54 ./usr/share/doc/lammps/bond_gromos.html -rw-r--r-- root/root 2703 2018-06-19 10:54 ./usr/share/doc/lammps/bond_harmonic.html -rw-r--r-- root/root 2846 2018-06-19 10:54 ./usr/share/doc/lammps/bond_harmonic_shift.html -rw-r--r-- root/root 2959 2018-06-19 10:54 ./usr/share/doc/lammps/bond_harmonic_shift_cut.html -rw-r--r-- root/root 2741 2018-06-19 10:54 ./usr/share/doc/lammps/bond_hybrid.html -rw-r--r-- root/root 2651 2018-06-19 10:54 ./usr/share/doc/lammps/bond_morse.html -rw-r--r-- root/root 910 2018-06-19 10:54 ./usr/share/doc/lammps/bond_none.html -rw-r--r-- root/root 2788 2018-06-19 10:54 ./usr/share/doc/lammps/bond_nonlinear.html -rw-r--r-- root/root 3683 2018-06-19 10:54 ./usr/share/doc/lammps/bond_oxdna.html -rw-r--r-- root/root 4729 2018-06-19 10:54 ./usr/share/doc/lammps/bond_quartic.html -rw-r--r-- root/root 4652 2018-06-19 10:54 ./usr/share/doc/lammps/bond_style.html -rw-r--r-- root/root 6837 2018-06-19 10:54 ./usr/share/doc/lammps/bond_table.html -rw-r--r-- root/root 2340 2018-06-19 10:54 ./usr/share/doc/lammps/bond_write.html -rw-r--r-- root/root 1573 2018-06-19 10:54 ./usr/share/doc/lammps/bond_zero.html -rw-r--r-- root/root 58 2018-06-19 10:54 ./usr/share/doc/lammps/bonds.html -rw-r--r-- root/root 4793 2018-06-19 10:54 ./usr/share/doc/lammps/boundary.html -rw-r--r-- root/root 2160 2018-06-19 10:54 ./usr/share/doc/lammps/box.html -rw-r--r-- root/root 16289 2018-06-19 10:54 ./usr/share/doc/lammps/change_box.html -rw-r--r-- root/root 1184 2018-06-19 10:54 ./usr/share/doc/lammps/clear.html -rw-r--r-- root/root 8061 2018-06-19 10:54 ./usr/share/doc/lammps/comm_modify.html -rw-r--r-- root/root 2606 2018-06-19 10:54 ./usr/share/doc/lammps/comm_style.html -rw-r--r-- root/root 55 2018-06-19 10:54 ./usr/share/doc/lammps/commands.html -rw-r--r-- root/root 15769 2018-06-19 10:54 ./usr/share/doc/lammps/compute.html -rw-r--r-- root/root 2996 2018-06-19 10:54 ./usr/share/doc/lammps/compute_ackland_atom.html -rw-r--r-- root/root 1796 2018-06-19 10:54 ./usr/share/doc/lammps/compute_angle.html -rw-r--r-- root/root 3578 2018-06-19 10:54 ./usr/share/doc/lammps/compute_angle_local.html -rw-r--r-- root/root 3786 2018-06-19 10:54 ./usr/share/doc/lammps/compute_angmom_chunk.html -rw-r--r-- root/root 2676 2018-06-19 10:54 ./usr/share/doc/lammps/compute_basal_atom.html -rw-r--r-- root/root 3960 2018-06-19 10:54 ./usr/share/doc/lammps/compute_body_local.html -rw-r--r-- root/root 1796 2018-06-19 10:54 ./usr/share/doc/lammps/compute_bond.html -rw-r--r-- root/root 6218 2018-06-19 10:54 ./usr/share/doc/lammps/compute_bond_local.html -rw-r--r-- root/root 6423 2018-06-19 10:54 ./usr/share/doc/lammps/compute_centro_atom.html -rw-r--r-- root/root 37179 2018-06-19 10:54 ./usr/share/doc/lammps/compute_chunk_atom.html -rw-r--r-- root/root 4497 2018-06-19 10:54 ./usr/share/doc/lammps/compute_cluster_atom.html -rw-r--r-- root/root 3474 2018-06-19 10:54 ./usr/share/doc/lammps/compute_cna_atom.html -rw-r--r-- root/root 4173 2018-06-19 10:54 ./usr/share/doc/lammps/compute_cnp_atom.html -rw-r--r-- root/root 1925 2018-06-19 10:54 ./usr/share/doc/lammps/compute_com.html -rw-r--r-- root/root 3610 2018-06-19 10:54 ./usr/share/doc/lammps/compute_com_chunk.html -rw-r--r-- root/root 1675 2018-06-19 10:54 ./usr/share/doc/lammps/compute_contact_atom.html -rw-r--r-- root/root 5986 2018-06-19 10:54 ./usr/share/doc/lammps/compute_coord_atom.html -rw-r--r-- root/root 2213 2018-06-19 10:54 ./usr/share/doc/lammps/compute_damage_atom.html -rw-r--r-- root/root 1846 2018-06-19 10:54 ./usr/share/doc/lammps/compute_dihedral.html -rw-r--r-- root/root 3063 2018-06-19 10:54 ./usr/share/doc/lammps/compute_dihedral_local.html -rw-r--r-- root/root 2375 2018-06-19 10:54 ./usr/share/doc/lammps/compute_dilatation_atom.html -rw-r--r-- root/root 4121 2018-06-19 10:54 ./usr/share/doc/lammps/compute_dipole_chunk.html -rw-r--r-- root/root 6106 2018-06-19 10:54 ./usr/share/doc/lammps/compute_displace_atom.html -rw-r--r-- root/root 2338 2018-06-19 10:54 ./usr/share/doc/lammps/compute_dpd.html -rw-r--r-- root/root 2309 2018-06-19 10:54 ./usr/share/doc/lammps/compute_dpd_atom.html -rw-r--r-- root/root 1962 2018-06-19 10:54 ./usr/share/doc/lammps/compute_edpd_temp_atom.html -rw-r--r-- root/root 2631 2018-06-19 10:54 ./usr/share/doc/lammps/compute_erotate_asphere.html -rw-r--r-- root/root 2219 2018-06-19 10:54 ./usr/share/doc/lammps/compute_erotate_rigid.html -rw-r--r-- root/root 1936 2018-06-19 10:54 ./usr/share/doc/lammps/compute_erotate_sphere.html -rw-r--r-- root/root 1675 2018-06-19 10:54 ./usr/share/doc/lammps/compute_erotate_sphere_atom.html -rw-r--r-- root/root 2335 2018-06-19 10:54 ./usr/share/doc/lammps/compute_event_displace.html -rw-r--r-- root/root 12512 2018-06-19 10:54 ./usr/share/doc/lammps/compute_fep.html -rw-r--r-- root/root 11089 2018-06-19 10:54 ./usr/share/doc/lammps/compute_global_atom.html -rw-r--r-- root/root 7330 2018-06-19 10:54 ./usr/share/doc/lammps/compute_group_group.html -rw-r--r-- root/root 2825 2018-06-19 10:54 ./usr/share/doc/lammps/compute_gyration.html -rw-r--r-- root/root 4718 2018-06-19 10:54 ./usr/share/doc/lammps/compute_gyration_chunk.html -rw-r--r-- root/root 7889 2018-06-19 10:54 ./usr/share/doc/lammps/compute_heat_flux.html -rw-r--r-- root/root 5026 2018-06-19 10:54 ./usr/share/doc/lammps/compute_hexorder_atom.html -rw-r--r-- root/root 1846 2018-06-19 10:54 ./usr/share/doc/lammps/compute_improper.html -rw-r--r-- root/root 3098 2018-06-19 10:54 ./usr/share/doc/lammps/compute_improper_local.html -rw-r--r-- root/root 3731 2018-06-19 10:54 ./usr/share/doc/lammps/compute_inertia_chunk.html -rw-r--r-- root/root 2224 2018-06-19 10:54 ./usr/share/doc/lammps/compute_ke.html -rw-r--r-- root/root 1377 2018-06-19 10:54 ./usr/share/doc/lammps/compute_ke_atom.html -rw-r--r-- root/root 2997 2018-06-19 10:54 ./usr/share/doc/lammps/compute_ke_atom_eff.html -rw-r--r-- root/root 3157 2018-06-19 10:54 ./usr/share/doc/lammps/compute_ke_eff.html -rw-r--r-- root/root 2085 2018-06-19 10:54 ./usr/share/doc/lammps/compute_ke_rigid.html -rw-r--r-- root/root 1739 2018-06-19 10:54 ./usr/share/doc/lammps/compute_meso_e_atom.html -rw-r--r-- root/root 1746 2018-06-19 10:54 ./usr/share/doc/lammps/compute_meso_rho_atom.html -rw-r--r-- root/root 1849 2018-06-19 10:54 ./usr/share/doc/lammps/compute_meso_t_atom.html -rw-r--r-- root/root 3195 2018-06-19 10:54 ./usr/share/doc/lammps/compute_modify.html -rw-r--r-- root/root 5242 2018-06-19 10:54 ./usr/share/doc/lammps/compute_msd.html -rw-r--r-- root/root 5580 2018-06-19 10:54 ./usr/share/doc/lammps/compute_msd_chunk.html -rw-r--r-- root/root 2977 2018-06-19 10:54 ./usr/share/doc/lammps/compute_msd_nongauss.html -rw-r--r-- root/root 3835 2018-06-19 10:54 ./usr/share/doc/lammps/compute_omega_chunk.html -rw-r--r-- root/root 6637 2018-06-19 10:54 ./usr/share/doc/lammps/compute_orientorder_atom.html -rw-r--r-- root/root 3650 2018-06-19 10:54 ./usr/share/doc/lammps/compute_pair.html -rw-r--r-- root/root 6867 2018-06-19 10:54 ./usr/share/doc/lammps/compute_pair_local.html -rw-r--r-- root/root 3089 2018-06-19 10:54 ./usr/share/doc/lammps/compute_pe.html -rw-r--r-- root/root 4157 2018-06-19 10:54 ./usr/share/doc/lammps/compute_pe_atom.html -rw-r--r-- root/root 2343 2018-06-19 10:54 ./usr/share/doc/lammps/compute_plasticity_atom.html -rw-r--r-- root/root 7121 2018-06-19 10:54 ./usr/share/doc/lammps/compute_pressure.html -rw-r--r-- root/root 2227 2018-06-19 10:54 ./usr/share/doc/lammps/compute_pressure_uef.html -rw-r--r-- root/root 7436 2018-06-19 10:54 ./usr/share/doc/lammps/compute_property_atom.html -rw-r--r-- root/root 5538 2018-06-19 10:54 ./usr/share/doc/lammps/compute_property_chunk.html -rw-r--r-- root/root 7988 2018-06-19 10:54 ./usr/share/doc/lammps/compute_property_local.html -rw-r--r-- root/root 10405 2018-06-19 10:54 ./usr/share/doc/lammps/compute_rdf.html -rw-r--r-- root/root 10737 2018-06-19 10:54 ./usr/share/doc/lammps/compute_reduce.html -rw-r--r-- root/root 8572 2018-06-19 10:54 ./usr/share/doc/lammps/compute_rigid_local.html -rw-r--r-- root/root 7944 2018-06-19 10:54 ./usr/share/doc/lammps/compute_saed.html -rw-r--r-- root/root 5916 2018-06-19 10:54 ./usr/share/doc/lammps/compute_slice.html -rw-r--r-- root/root 1891 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_contact_radius.html -rw-r--r-- root/root 1706 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_damage.html -rw-r--r-- root/root 2210 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_hourglass_error.html -rw-r--r-- root/root 1648 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_internal_energy.html -rw-r--r-- root/root 1913 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_plastic_strain.html -rw-r--r-- root/root 1935 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_plastic_strain_rate.html -rw-r--r-- root/root 1663 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_rho.html -rw-r--r-- root/root 2018 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_tlsph_defgrad.html -rw-r--r-- root/root 2080 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_tlsph_dt.html -rw-r--r-- root/root 1771 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_tlsph_num_neighs.html -rw-r--r-- root/root 2162 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_tlsph_shape.html -rw-r--r-- root/root 1969 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_tlsph_strain.html -rw-r--r-- root/root 1973 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_tlsph_strain_rate.html -rw-r--r-- root/root 2081 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_tlsph_stress.html -rw-r--r-- root/root 2272 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_triangle_mesh_vertices.html -rw-r--r-- root/root 1766 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_ulsph_num_neighs.html -rw-r--r-- root/root 1851 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_ulsph_strain.html -rw-r--r-- root/root 1893 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_ulsph_strain_rate.html -rw-r--r-- root/root 2050 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_ulsph_stress.html -rw-r--r-- root/root 1716 2018-06-19 10:54 ./usr/share/doc/lammps/compute_smd_vol.html -rw-r--r-- root/root 13185 2018-06-19 10:54 ./usr/share/doc/lammps/compute_sna_atom.html -rw-r--r-- root/root 8105 2018-06-19 10:54 ./usr/share/doc/lammps/compute_stress_atom.html -rw-r--r-- root/root 4177 2018-06-19 10:54 ./usr/share/doc/lammps/compute_tally.html -rw-r--r-- root/root 1841 2018-06-19 10:54 ./usr/share/doc/lammps/compute_tdpd_cc_atom.html -rw-r--r-- root/root 4782 2018-06-19 10:54 ./usr/share/doc/lammps/compute_temp.html -rw-r--r-- root/root 6944 2018-06-19 10:54 ./usr/share/doc/lammps/compute_temp_asphere.html -rw-r--r-- root/root 5764 2018-06-19 10:54 ./usr/share/doc/lammps/compute_temp_body.html -rw-r--r-- root/root 11710 2018-06-19 10:54 ./usr/share/doc/lammps/compute_temp_chunk.html -rw-r--r-- root/root 4085 2018-06-19 10:54 ./usr/share/doc/lammps/compute_temp_com.html -rw-r--r-- root/root 5559 2018-06-19 10:54 ./usr/share/doc/lammps/compute_temp_cs.html -rw-r--r-- root/root 6830 2018-06-19 10:54 ./usr/share/doc/lammps/compute_temp_deform.html -rw-r--r-- root/root 3028 2018-06-19 10:54 ./usr/share/doc/lammps/compute_temp_deform_eff.html -rw-r--r-- root/root 3230 2018-06-19 10:54 ./usr/share/doc/lammps/compute_temp_drude.html -rw-r--r-- root/root 4189 2018-06-19 10:54 ./usr/share/doc/lammps/compute_temp_eff.html -rw-r--r-- root/root 5453 2018-06-19 10:54 ./usr/share/doc/lammps/compute_temp_partial.html -rw-r--r-- root/root 9116 2018-06-19 10:54 ./usr/share/doc/lammps/compute_temp_profile.html -rw-r--r-- root/root 5420 2018-06-19 10:54 ./usr/share/doc/lammps/compute_temp_ramp.html -rw-r--r-- root/root 5082 2018-06-19 10:54 ./usr/share/doc/lammps/compute_temp_region.html -rw-r--r-- root/root 2475 2018-06-19 10:54 ./usr/share/doc/lammps/compute_temp_region_eff.html -rw-r--r-- root/root 4362 2018-06-19 10:54 ./usr/share/doc/lammps/compute_temp_rotate.html -rw-r--r-- root/root 5996 2018-06-19 10:54 ./usr/share/doc/lammps/compute_temp_sphere.html -rw-r--r-- root/root 1710 2018-06-19 10:54 ./usr/share/doc/lammps/compute_temp_uef.html -rw-r--r-- root/root 6308 2018-06-19 10:54 ./usr/share/doc/lammps/compute_ti.html -rw-r--r-- root/root 3727 2018-06-19 10:54 ./usr/share/doc/lammps/compute_torque_chunk.html -rw-r--r-- root/root 2652 2018-06-19 10:54 ./usr/share/doc/lammps/compute_vacf.html -rw-r--r-- root/root 3101 2018-06-19 10:54 ./usr/share/doc/lammps/compute_vcm_chunk.html -rw-r--r-- root/root 11389 2018-06-19 10:54 ./usr/share/doc/lammps/compute_voronoi_atom.html -rw-r--r-- root/root 11126 2018-06-19 10:54 ./usr/share/doc/lammps/compute_xrd.html -rw-r--r-- root/root 55 2018-06-19 10:54 ./usr/share/doc/lammps/computes.html -rw-r--r-- root/root 17268 2018-06-19 10:54 ./usr/share/doc/lammps/create_atoms.html -rw-r--r-- root/root 8991 2018-06-19 10:54 ./usr/share/doc/lammps/create_bonds.html -rw-r--r-- root/root 7676 2018-06-19 10:54 ./usr/share/doc/lammps/create_box.html -rw-r--r-- root/root 7408 2018-06-19 10:54 ./usr/share/doc/lammps/delete_atoms.html -rw-r--r-- root/root 7665 2018-06-19 10:54 ./usr/share/doc/lammps/delete_bonds.html -rw-r--r-- root/root 1054 2018-06-19 10:54 ./usr/share/doc/lammps/dielectric.html -rw-r--r-- root/root 7776 2018-06-19 10:54 ./usr/share/doc/lammps/dihedral_charmm.html -rw-r--r-- root/root 6519 2018-06-19 10:54 ./usr/share/doc/lammps/dihedral_class2.html -rw-r--r-- root/root 4686 2018-06-19 10:54 ./usr/share/doc/lammps/dihedral_coeff.html -rw-r--r-- root/root 3302 2018-06-19 10:54 ./usr/share/doc/lammps/dihedral_cosine_shift_exp.html -rw-r--r-- root/root 2696 2018-06-19 10:54 ./usr/share/doc/lammps/dihedral_fourier.html -rw-r--r-- root/root 3108 2018-06-19 10:54 ./usr/share/doc/lammps/dihedral_harmonic.html -rw-r--r-- root/root 3115 2018-06-19 10:54 ./usr/share/doc/lammps/dihedral_helix.html -rw-r--r-- root/root 3622 2018-06-19 10:54 ./usr/share/doc/lammps/dihedral_hybrid.html -rw-r--r-- root/root 2597 2018-06-19 10:54 ./usr/share/doc/lammps/dihedral_multi_harmonic.html -rw-r--r-- root/root 2562 2018-06-19 10:54 ./usr/share/doc/lammps/dihedral_nharmonic.html -rw-r--r-- root/root 957 2018-06-19 10:54 ./usr/share/doc/lammps/dihedral_none.html -rw-r--r-- root/root 3057 2018-06-19 10:54 ./usr/share/doc/lammps/dihedral_opls.html -rw-r--r-- root/root 2651 2018-06-19 10:54 ./usr/share/doc/lammps/dihedral_quadratic.html -rw-r--r-- root/root 3258 2018-06-19 10:54 ./usr/share/doc/lammps/dihedral_spherical.html -rw-r--r-- root/root 5136 2018-06-19 10:54 ./usr/share/doc/lammps/dihedral_style.html -rw-r--r-- root/root 9320 2018-06-19 10:54 ./usr/share/doc/lammps/dihedral_table.html -rw-r--r-- root/root 1541 2018-06-19 10:54 ./usr/share/doc/lammps/dihedral_zero.html -rw-r--r-- root/root 62 2018-06-19 10:54 ./usr/share/doc/lammps/dihedrals.html -rw-r--r-- root/root 1484 2018-06-19 10:54 ./usr/share/doc/lammps/dimension.html -rw-r--r-- root/root 6572 2018-06-19 10:54 ./usr/share/doc/lammps/displace_atoms.html -rw-r--r-- root/root 36378 2018-06-19 10:54 ./usr/share/doc/lammps/dump.html -rw-r--r-- root/root 1762 2018-06-19 10:54 ./usr/share/doc/lammps/dump_cfg_uef.html -rw-r--r-- root/root 5089 2018-06-19 10:54 ./usr/share/doc/lammps/dump_h5md.html -rw-r--r-- root/root 31716 2018-06-19 10:54 ./usr/share/doc/lammps/dump_image.html -rw-r--r-- root/root 52144 2018-06-19 10:54 ./usr/share/doc/lammps/dump_modify.html -rw-r--r-- root/root 5572 2018-06-19 10:54 ./usr/share/doc/lammps/dump_molfile.html -rw-r--r-- root/root 3090 2018-06-19 10:54 ./usr/share/doc/lammps/dump_netcdf.html -rw-r--r-- root/root 8578 2018-06-19 10:54 ./usr/share/doc/lammps/dump_vtk.html -rw-r--r-- root/root 957 2018-06-19 10:54 ./usr/share/doc/lammps/echo.html drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/ -rw-r--r-- root/root 1891 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/box/ -rw-r--r-- root/root 190 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/box/box.py -rw-r--r-- root/root 6048 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/box/data.box.gz -rw-r--r-- root/root 2351 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/box/in.box -rw-r--r-- root/root 2389 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/box/in.box.mp -rw-r--r-- root/root 7508 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/box/log.1Feb14.box.g++.8.gz -rw-r--r-- root/root 7672 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/box/log.1Feb14.box.mp.g++.8.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/dimer/ -rw-r--r-- root/root 3058 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/dimer/data.dimer.gz -rw-r--r-- root/root 188 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/dimer/dimer.py -rw-r--r-- root/root 2220 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/dimer/in.dimer -rw-r--r-- root/root 2252 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/dimer/in.dimer.mp -rw-r--r-- root/root 7733 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/dimer/log.1Feb14.dimer.g++.8.gz -rw-r--r-- root/root 5249 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/dimer/log.1Feb14.dimer.mp.g++.8.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/ellipsoid/ -rw-r--r-- root/root 2595 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/ellipsoid/in.ellipsoid -rw-r--r-- root/root 2642 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/ellipsoid/in.ellipsoid.mp -rw-r--r-- root/root 3419 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/ellipsoid/log.1Feb14.ellipsoid.g++.8.gz -rw-r--r-- root/root 5946 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/ellipsoid/log.1Feb14.ellipsoid.mp.g++.8.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/line/ -rw-r--r-- root/root 8534 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/line/data.line.gz -rw-r--r-- root/root 9508 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/line/data.line.srd.gz -rw-r--r-- root/root 1144 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/line/in.line -rw-r--r-- root/root 2378 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/line/in.line.srd -rw-r--r-- root/root 274 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/line/line.py -rw-r--r-- root/root 244 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/line/line.srd.py -rw-r--r-- root/root 301 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/line/line.srd.viz.py -rw-r--r-- root/root 245 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/line/line.viz.py -rw-r--r-- root/root 4959 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/line/log.1Feb14.line.g++.8.gz -rw-r--r-- root/root 4106 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/line/log.1Feb14.line.srd.g++.8.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/poly/ -rw-r--r-- root/root 2471 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/poly/in.poly -rw-r--r-- root/root 2490 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/poly/in.poly.mp -rw-r--r-- root/root 7662 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/poly/log.1Feb14.poly.g++.8.gz -rw-r--r-- root/root 5060 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/poly/log.1Feb14.poly.mp.g++.8.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/star/ -rw-r--r-- root/root 3947 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/star/data.star.gz -rw-r--r-- root/root 2355 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/star/in.star -rw-r--r-- root/root 2391 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/star/in.star.mp -rw-r--r-- root/root 7557 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/star/log.1Feb14.star.g++.8.gz -rw-r--r-- root/root 7705 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/star/log.1Feb14.star.mp.g++.8.gz -rw-r--r-- root/root 206 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/star/star.py drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/tri/ -rw-r--r-- root/root 48052 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/tri/data.tri.srd.gz -rw-r--r-- root/root 2471 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/tri/in.tri.srd -rw-r--r-- root/root 3485 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/tri/log.1Feb14.tri.srd.g++.8.gz -rw-r--r-- root/root 243 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/tri/tri.srd.py -rw-r--r-- root/root 388 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ASPHERE/tri/tri.srd.viz.py drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/ -rw-r--r-- root/root 2170 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran/ -rw-r--r-- root/root 344 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran/README -rw-r--r-- root/root 3466 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran/libfwrapper.c drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran2/ -rw-r--r-- root/root 1310 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran2/LAMMPS-wrapper.cpp.gz -rw-r--r-- root/root 1798 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran2/LAMMPS-wrapper.h -rw-r--r-- root/root 6119 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran2/LAMMPS.F90.gz -rw-r--r-- root/root 5104 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran2/README.gz -rw-r--r-- root/root 476 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran2/in.simple -rw-r--r-- root/root 1037 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran2/makefile -rw-r--r-- root/root 1809 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran2/simple.f90.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran_dftb/ -rw-r--r-- root/root 1310 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran_dftb/LAMMPS-wrapper.cpp.gz -rw-r--r-- root/root 1797 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran_dftb/LAMMPS-wrapper.h -rw-r--r-- root/root 2934 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran_dftb/LAMMPS-wrapper2.cpp -rw-r--r-- root/root 1558 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran_dftb/LAMMPS-wrapper2.h -rw-r--r-- root/root 6291 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran_dftb/LAMMPS.F90.gz -rw-r--r-- root/root 1837 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran_dftb/README -rw-r--r-- root/root 1538 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran_dftb/data.diamond.gz -rw-r--r-- root/root 802 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran_dftb/dftb_in.hsd -rw-r--r-- root/root 1763 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran_dftb/dftb_pin.hsd.gz -rw-r--r-- root/root 348 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran_dftb/in.simple -rw-r--r-- root/root 3635 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran_dftb/log.simple -rw-r--r-- root/root 1499 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran_dftb/makefile -rw-r--r-- root/root 3841 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/fortran_dftb/simple.f90 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_quest/ -rw-r--r-- root/root 778 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_quest/Makefile.g++ -rw-r--r-- root/root 2426 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_quest/README -rw-r--r-- root/root 367 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_quest/in.lammps -rw-r--r-- root/root 38 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_quest/lmppath.h -rw-r--r-- root/root 2346 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_quest/lmpqst.cpp.gz -rw-r--r-- root/root 1923 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_quest/log.lammps.1 -rw-r--r-- root/root 1922 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_quest/log.lammps.4 -rw-r--r-- root/root 51 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_quest/qstexe.h -rw-r--r-- root/root 3071 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_quest/si_111.in.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_spparks/ -rw-r--r-- root/root 827 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_spparks/Makefile.g++ -rw-r--r-- root/root 3005 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_spparks/README -rw-r--r-- root/root 2670 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_spparks/in.lammps -rw-r--r-- root/root 360 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_spparks/in.spparks -rw-r--r-- root/root 38 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_spparks/lmppath.h -rw-r--r-- root/root 2010 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_spparks/lmpspk.cpp.gz -rw-r--r-- root/root 7619 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_spparks/log.lammps.1.gz -rw-r--r-- root/root 7917 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_spparks/log.lammps.4.gz -rw-r--r-- root/root 2064 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_spparks/log.spparks.1.gz -rw-r--r-- root/root 2093 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_spparks/log.spparks.4.gz -rw-r--r-- root/root 38 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/lammps_spparks/spkpath.h drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/ -rw-r--r-- root/root 601 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/Makefile.g++ -rw-r--r-- root/root 579 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/README -rw-r--r-- root/root 1039 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/error.cpp -rw-r--r-- root/root 225 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/error.h -rw-r--r-- root/root 1007 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/files.cpp -rw-r--r-- root/root 129 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/files.h -rw-r--r-- root/root 2460 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/irregular.cpp.gz -rw-r--r-- root/root 2011 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/irregular.h -rw-r--r-- root/root 1316 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/lammps_data_write.cpp.gz -rw-r--r-- root/root 806 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/lammps_data_write.h -rw-r--r-- root/root 2358 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/many2many.cpp.gz -rw-r--r-- root/root 1179 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/many2many.h -rw-r--r-- root/root 2285 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/many2one.cpp -rw-r--r-- root/root 362 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/many2one.h -rw-r--r-- root/root 2950 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/memory.cpp -rw-r--r-- root/root 437 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/memory.h -rw-r--r-- root/root 1641 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/one2many.cpp -rw-r--r-- root/root 330 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/one2many.h -rw-r--r-- root/root 1752 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/send2one.cpp -rw-r--r-- root/root 433 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/library/send2one.h drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/multiple/ -rw-r--r-- root/root 1440 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/multiple/README -rw-r--r-- root/root 1136692 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/multiple/data.chain.gz -rw-r--r-- root/root 370 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/multiple/in.chain -rw-r--r-- root/root 3970 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/multiple/multiple.cpp drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/simple/ -rw-r--r-- root/root 3551 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/simple/README -rw-r--r-- root/root 376 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/simple/in.lj -rw-r--r-- root/root 2897 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/simple/log.simple.c++.1 -rw-r--r-- root/root 2876 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/simple/log.simple.c++.4 -rw-r--r-- root/root 1852 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/simple/simple.c.gz -rw-r--r-- root/root 1915 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/simple/simple.cpp.gz -rw-r--r-- root/root 3898 2018-06-19 10:54 ./usr/share/doc/lammps/examples/COUPLE/simple/simple.f90 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/DIFFUSE/ -rw-r--r-- root/root 2423 2018-06-19 10:54 ./usr/share/doc/lammps/examples/DIFFUSE/README -rw-r--r-- root/root 1281 2018-06-19 10:54 ./usr/share/doc/lammps/examples/DIFFUSE/in.msd.2d -rw-r--r-- root/root 1244 2018-06-19 10:54 ./usr/share/doc/lammps/examples/DIFFUSE/in.vacf.2d -rw-r--r-- root/root 4369 2018-06-19 10:54 ./usr/share/doc/lammps/examples/DIFFUSE/log.13Oct16.msd.2d.g++.8.gz -rw-r--r-- root/root 3834 2018-06-19 10:54 ./usr/share/doc/lammps/examples/DIFFUSE/log.13Oct16.vacf.2d.g++.8.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ELASTIC/ -rw-r--r-- root/root 782 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ELASTIC/Si.sw -rw-r--r-- root/root 2053 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ELASTIC/compliance.py -rw-r--r-- root/root 3779 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ELASTIC/displace.mod -rw-r--r-- root/root 1942 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ELASTIC/in.elastic.gz -rw-r--r-- root/root 1291 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ELASTIC/init.mod -rw-r--r-- root/root 455 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ELASTIC/potential.mod drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ELASTIC_T/ -rw-r--r-- root/root 782 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ELASTIC_T/Si.sw -rw-r--r-- root/root 3625 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ELASTIC_T/displace.mod -rw-r--r-- root/root 2057 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ELASTIC_T/in.elastic.gz -rw-r--r-- root/root 1454 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ELASTIC_T/init.mod -rw-r--r-- root/root 627 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ELASTIC_T/potential.mod drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/ -rw-r--r-- root/root 1865 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/README -rw-r--r-- root/root 137834 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/data.lj.gz -rw-r--r-- root/root 241519 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/data.spce.gz -rw-r--r-- root/root 1685 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/in.lj.ehex.gz -rw-r--r-- root/root 1687 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/in.lj.hex.gz -rw-r--r-- root/root 2273 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/in.spce.ehex.gz -rw-r--r-- root/root 2279 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/in.spce.hex.gz -rw-r--r-- root/root 3533 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/log.10May16.lj.ehex.g++.32.gz -rw-r--r-- root/root 3604 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/log.10May16.lj.hex.g++.32.gz -rw-r--r-- root/root 18006 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/log.10May16.spce.ehex.g++.32.gz -rw-r--r-- root/root 17575 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/log.10May16.spce.hex.g++.32.gz -rw-r--r-- root/root 1171 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/out.10May16.Elj.ehex.g++.32 -rw-r--r-- root/root 1167 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/out.10May16.Elj.hex.g++.32 -rw-r--r-- root/root 1075 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/out.10May16.Espce.ehex.g++.32 -rw-r--r-- root/root 1080 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/out.10May16.Espce.hex.g++.32 -rw-r--r-- root/root 1911 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/out.10May16.Tlj.ehex.g++.32 -rw-r--r-- root/root 1906 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/out.10May16.Tlj.hex.g++.32 -rw-r--r-- root/root 1878 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/out.10May16.Tspce.ehex.g++.32 -rw-r--r-- root/root 1871 2018-06-19 10:54 ./usr/share/doc/lammps/examples/HEAT/out.10May16.Tspce.hex.g++.32 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/KAPPA/ -rw-r--r-- root/root 3883 2018-06-19 10:54 ./usr/share/doc/lammps/examples/KAPPA/README -rw-r--r-- root/root 1623 2018-06-19 10:54 ./usr/share/doc/lammps/examples/KAPPA/in.ehex -rw-r--r-- root/root 1622 2018-06-19 10:54 ./usr/share/doc/lammps/examples/KAPPA/in.heat -rw-r--r-- root/root 1810 2018-06-19 10:54 ./usr/share/doc/lammps/examples/KAPPA/in.heatflux -rw-r--r-- root/root 2115 2018-06-19 10:54 ./usr/share/doc/lammps/examples/KAPPA/in.langevin -rw-r--r-- root/root 1405 2018-06-19 10:54 ./usr/share/doc/lammps/examples/KAPPA/in.mp -rw-r--r-- root/root 3152 2018-06-19 10:54 ./usr/share/doc/lammps/examples/KAPPA/log.13Oct16.ehex.g++.8.gz -rw-r--r-- root/root 3128 2018-06-19 10:54 ./usr/share/doc/lammps/examples/KAPPA/log.13Oct16.heat.g++.8.gz -rw-r--r-- root/root 4498 2018-06-19 10:54 ./usr/share/doc/lammps/examples/KAPPA/log.13Oct16.heatflux.g++.8.gz -rw-r--r-- root/root 3695 2018-06-19 10:54 ./usr/share/doc/lammps/examples/KAPPA/log.13Oct16.langevin.g++.8.gz -rw-r--r-- root/root 3540 2018-06-19 10:54 ./usr/share/doc/lammps/examples/KAPPA/log.13Oct16.mp.g++.8.gz -rw-r--r-- root/root 165485 2018-06-19 10:54 ./usr/share/doc/lammps/examples/KAPPA/profile.1Feb14.heatflux.g++.8.gz -rw-r--r-- root/root 3332 2018-06-19 10:54 ./usr/share/doc/lammps/examples/KAPPA/profile.1Feb14.langevin.g++.8.gz -rw-r--r-- root/root 6448 2018-06-19 10:54 ./usr/share/doc/lammps/examples/KAPPA/profile.1Feb14.mp.g++.8.gz -rw-r--r-- root/root 3343 2018-06-19 10:54 ./usr/share/doc/lammps/examples/KAPPA/profile.7Jun16.ehex.g++.8.gz -rw-r--r-- root/root 3365 2018-06-19 10:54 ./usr/share/doc/lammps/examples/KAPPA/profile.7Jun16.heat.g++.8.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/MC/ -rw-r--r-- root/root 1305 2018-06-19 10:54 ./usr/share/doc/lammps/examples/MC/README -rw-r--r-- root/root 3198 2018-06-19 10:54 ./usr/share/doc/lammps/examples/MC/in.mc -rw-r--r-- root/root 249224 2018-06-19 10:54 ./usr/share/doc/lammps/examples/MC/log.13Oct16.mc.g++.1.gz -rw-r--r-- root/root 3260 2018-06-19 10:54 ./usr/share/doc/lammps/examples/README.gz drwxr-xr-x root/root 0 2018-05-10 17:14 ./usr/share/doc/lammps/examples/USER/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/ -rw-r--r-- root/root 3824 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/README.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/ -rw-r--r-- root/root 171 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/Ar_CauchyBorn.mat -rw-r--r-- root/root 171 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/Ar_CauchyBorn_linear.mat -rw-r--r-- root/root 209 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/Au_CauchyBorn.mat -rw-r--r-- root/root 214 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/Au_CauchyBorn_linear.mat -rw-r--r-- root/root 69 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/Au_eam.mat -rw-r--r-- root/root 80 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/Au_eam_linear.mat -rw-r--r-- root/root 65 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/Cu_CauchyBorn.mat -rw-r--r-- root/root 3084 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/cb_biaxial.screen.gz -rw-r--r-- root/root 3091 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/cb_shear.screen.gz -rw-r--r-- root/root 1520 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/cb_unistrain.screen.gz -rw-r--r-- root/root 1582 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/cb_unistrain_eam.screen.gz -rw-r--r-- root/root 1674 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/cb_unistrain_eam_linear.screen.gz -rw-r--r-- root/root 1736 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/cb_unistrain_linear.screen.gz -rw-r--r-- root/root 2901 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/cb_volumetric.screen.gz -rw-r--r-- root/root 5833 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/flying_cube.screen.gz -rw-r--r-- root/root 3981 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/ftcb_constV.screen.gz -rw-r--r-- root/root 1825 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.cb_biaxial -rw-r--r-- root/root 1938 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.cb_shear -rw-r--r-- root/root 1536 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.cb_unistrain -rw-r--r-- root/root 1805 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.cb_unistrain_eam -rw-r--r-- root/root 1894 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.cb_unistrain_eam_linear -rw-r--r-- root/root 2055 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.cb_unistrain_linear -rw-r--r-- root/root 1628 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.cb_volumetric -rw-r--r-- root/root 2210 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.flying_cube -rw-r--r-- root/root 2875 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.ftcb_constV -rw-r--r-- root/root 1174 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/in.read_xref -rw-r--r-- root/root 2774 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/cauchy_born/read_xref.screen drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/ -rw-r--r-- root/root 642 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/Ar_ddm.mat -rw-r--r-- root/root 1146 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/CNT_ddm.mat -rw-r--r-- root/root 1559 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/Cu_cddm.mat -rw-r--r-- root/root 2462 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/SiGe_ddm_schrodinger.mat -rw-r--r-- root/root 1684 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/SiVacuum_cddm_schrodinger.mat -rw-r--r-- root/root 1372 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/SiVacuum_ddm_schrodinger.mat -rw-r--r-- root/root 1030 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/Si_ddm.mat -rw-r--r-- root/root 1395 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/Si_ddm_eq.mat -rw-r--r-- root/root 1257 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/Si_ddm_schrodinger.mat -rw-r--r-- root/root 1101 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/Si_ddm_thermopower.mat -rw-r--r-- root/root 1770 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/convective_pulse.screen.gz -rw-r--r-- root/root 3115 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/ddm_schrodinger.screen -rw-r--r-- root/root 1249 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/finite_well.screen.gz -rw-r--r-- root/root 2581 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.convective_pulse -rw-r--r-- root/root 2337 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.ddm_schrodinger -rw-r--r-- root/root 2576 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.finite_well -rw-r--r-- root/root 2271 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.no_atoms_ddm -rw-r--r-- root/root 2422 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.null_material_ddm -rw-r--r-- root/root 1319 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.poisson1d_noatoms -rw-r--r-- root/root 2574 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.poisson2d_noatoms -rw-r--r-- root/root 1594 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.schrodinger-poisson2d_Jconstraint.gz -rw-r--r-- root/root 1668 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.schrodinger-poisson2d_convective.gz -rw-r--r-- root/root 1454 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/in.schrodinger-poisson2d_noatoms.gz -rw-r--r-- root/root 1757 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/no_atoms_ddm.screen.gz -rw-r--r-- root/root 1978 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/null_material_ddm.screen.gz -rw-r--r-- root/root 1331 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/poisson1d_noatoms.screen -rw-r--r-- root/root 1171 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/poisson2d_noatoms.screen.gz -rw-r--r-- root/root 1759 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/schrodinger-poisson2d_Jconstraint.screen.gz -rw-r--r-- root/root 1780 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/schrodinger-poisson2d_convective.screen.gz -rw-r--r-- root/root 1635 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/drift_diffusion/schrodinger-poisson2d_noatoms.screen.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/ -rw-r--r-- root/root 186 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/Ar_CauchyBorn.mat -rw-r--r-- root/root 197 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/Ar_CauchyBornLinear.mat -rw-r--r-- root/root 485 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/Ar_damped.mat -rw-r--r-- root/root 349 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/Ar_elastic.mat -rw-r--r-- root/root 172 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/Ar_thermo_elastic.mat -rw-r--r-- root/root 263 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/Au_elastic.mat -rw-r--r-- root/root 28980 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/CNT.mat.gz -rw-r--r-- root/root 303 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/CNT_electrostatic.mat -rw-r--r-- root/root 450 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/CNT_electrostatic2.mat -rw-r--r-- root/root 153 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/CNT_id.mat -rw-r--r-- root/root 3184 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/bar1d.screen.gz -rw-r--r-- root/root 7076 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/bar1d_damped.screen.gz -rw-r--r-- root/root 3674 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/bar1d_flux.screen.gz -rw-r--r-- root/root 2791 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/bar1d_frac_step.screen.gz -rw-r--r-- root/root 2700 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/bar1d_ghost_flux.screen.gz -rw-r--r-- root/root 4009 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/bar1d_thermo_elastic.screen -rw-r--r-- root/root 16856 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/cnt_electrostatic.screen.gz -rw-r--r-- root/root 2535 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/cnt_electrostatic2.screen.gz -rw-r--r-- root/root 6263 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/cnt_fixed_charge.screen.gz -rw-r--r-- root/root 2422 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/eam_energy.screen.gz -rw-r--r-- root/root 1860 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/electron_density.screen.gz -rw-r--r-- root/root 11057 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/electrostatic_bending.screen.gz -rw-r--r-- root/root 6569 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/electrostatic_bending_dos.screen.gz -rw-r--r-- root/root 2750 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/in.bar1d -rw-r--r-- root/root 3919 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/in.bar1d_damped -rw-r--r-- root/root 3250 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/in.bar1d_flux -rw-r--r-- root/root 3087 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/in.bar1d_frac_step -rw-r--r-- root/root 3429 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/in.bar1d_ghost_flux -rw-r--r-- root/root 1604 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/in.bar1d_thermo_elastic.gz -rw-r--r-- root/root 2300 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/in.eam_energy -rw-r--r-- root/root 2337 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/in.electron_density -rw-r--r-- root/root 1844 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/in.no_atoms -rw-r--r-- root/root 1887 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/in.no_atoms_cb -rw-r--r-- root/root 1862 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/in.no_atoms_cb_linear -rw-r--r-- root/root 2176 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/no_atoms.screen -rw-r--r-- root/root 2229 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/no_atoms_cb.screen -rw-r--r-- root/root 2319 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/elastic/no_atoms_cb_linear.screen drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/ -rw-r--r-- root/root 107 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/Ar_elastic.mat -rw-r--r-- root/root 107 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/Ar_electrostatic.mat -rw-r--r-- root/root 160 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/Ar_liquid.mat -rw-r--r-- root/root 64 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/Ar_species.mat -rw-r--r-- root/root 106 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/Ar_species_dl.mat -rw-r--r-- root/root 147 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/Ar_thermal.mat -rw-r--r-- root/root 93 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/Ar_visc_no_atoms.mat -rw-r--r-- root/root 126 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/Ar_viscosity.mat -rw-r--r-- root/root 2888 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/bar1d_fluids.screen.gz -rw-r--r-- root/root 2022 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/concentration.screen.gz -rw-r--r-- root/root 2287 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/conducting_interface.screen.gz -rw-r--r-- root/root 186 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/dielectric.mat -rw-r--r-- root/root 2211 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/dielectric_interface.screen.gz -rw-r--r-- root/root 2515 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/double_layer.screen.gz -rw-r--r-- root/root 4013 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/in.bar1d_fluids -rw-r--r-- root/root 2113 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/in.concentration.gz -rw-r--r-- root/root 1687 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/in.conducting_interface.gz -rw-r--r-- root/root 1577 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/in.dielectric_interface.gz -rw-r--r-- root/root 3315 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/in.double_layer -rw-r--r-- root/root 2287 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/in.liquid_electrostatic -rw-r--r-- root/root 2649 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/in.opp_force -rw-r--r-- root/root 2503 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/in.poisson -rw-r--r-- root/root 3193 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/in.shear_flow -rw-r--r-- root/root 1142 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/in.shear_no_atoms -rw-r--r-- root/root 2134 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/liquid_electrostatic.screen.gz -rw-r--r-- root/root 2284 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/opp_force.screen.gz -rw-r--r-- root/root 2340 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/poisson.screen.gz -rw-r--r-- root/root 2698 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/shear_flow.screen -rw-r--r-- root/root 857 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/fluids/shear_no_atoms.screen.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/ -rw-r--r-- root/root 403 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/consistency.screen -rw-r--r-- root/root 403 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/eam_kernel_convergence.screen -rw-r--r-- root/root 403 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/eam_unistrain_cell.screen -rw-r--r-- root/root 403 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/eam_unistrain_mesh.screen -rw-r--r-- root/root 403 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/eam_unistrain_qcylinder.screen -rw-r--r-- root/root 403 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/eam_unistrain_qsphere.screen -rw-r--r-- root/root 403 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/eam_unistrain_step.screen -rw-r--r-- root/root 403 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/eam_volume_stretch.screen -rw-r--r-- root/root 403 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/eshelby_static.screen -rw-r--r-- root/root 2030 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/in.consistency -rw-r--r-- root/root 1575 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/in.eam_kernel_convergence -rw-r--r-- root/root 1605 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/in.eam_unistrain_cell -rw-r--r-- root/root 1659 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/in.eam_unistrain_mesh -rw-r--r-- root/root 1559 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/in.eam_unistrain_qcylinder -rw-r--r-- root/root 1552 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/in.eam_unistrain_qsphere -rw-r--r-- root/root 1544 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/in.eam_unistrain_step -rw-r--r-- root/root 1451 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/in.eam_volume_stretch -rw-r--r-- root/root 1896 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/in.eshelby_static.gz -rw-r--r-- root/root 1411 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/in.nvt -rw-r--r-- root/root 33468 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/nvt.data.gz -rw-r--r-- root/root 403 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/hardy/nvt.screen drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/ -rw-r--r-- root/root 553 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/Ar_ttm.mat -rw-r--r-- root/root 210 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/Si.mat -rw-r--r-- root/root 3681 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/gaussianIC1d_hex.screen -rw-r--r-- root/root 4183 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/gaussianIC2d_hex.screen.gz -rw-r--r-- root/root 1579 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/gaussianIC2d_hex20_uniform.screen.gz -rw-r--r-- root/root 3569 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/gaussianIC2d_hex27_uniform.screen -rw-r--r-- root/root 1452 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/gaussianIC2d_hex_uniform.screen.gz -rw-r--r-- root/root 3727 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/gaussianIC2d_tet.screen -rw-r--r-- root/root 1611 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/in.gaussianIC1d_hex -rw-r--r-- root/root 2041 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/in.gaussianIC2d_hex -rw-r--r-- root/root 1119 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/in.gaussianIC2d_hex20_uniform -rw-r--r-- root/root 1119 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/in.gaussianIC2d_hex27_uniform -rw-r--r-- root/root 1277 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/in.gaussianIC2d_tet -rw-r--r-- root/root 869 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/in.kernel2d_hex -rw-r--r-- root/root 679 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/in.kernel2d_tet -rw-r--r-- root/root 699 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/in.mesh2d_tet -rw-r--r-- root/root 3152 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/in.semicircle -rw-r--r-- root/root 2513 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/kernel2d_hex.screen -rw-r--r-- root/root 2328 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/kernel2d_tet.screen -rw-r--r-- root/root 2357 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/mesh2d_tet.screen -rw-r--r-- root/root 2563 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/mesh/semicircle.screen.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/molecule/ -rw-r--r-- root/root 2133 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/molecule/harmonic_bonds.screen.gz -rw-r--r-- root/root 1765 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/molecule/in.harmonic_bonds -rw-r--r-- root/root 3158 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/molecule/in.polarize -rw-r--r-- root/root 1717 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/molecule/in.quartic_bonds -rw-r--r-- root/root 2266 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/molecule/in.water -rw-r--r-- root/root 2533 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/molecule/polarize.screen.gz -rw-r--r-- root/root 1763 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/molecule/quartic_bonds.screen.gz -rw-r--r-- root/root 68 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/molecule/water.mat -rw-r--r-- root/root 1662 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/molecule/water.screen.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/ -rw-r--r-- root/root 172 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/Ar_thermal.mat -rw-r--r-- root/root 7914 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/bar1d.screen.gz -rw-r--r-- root/root 1863 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/bar1d_all_atoms.screen.gz -rw-r--r-- root/root 3255 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/bar1d_combined.screen.gz -rw-r--r-- root/root 5191 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/bar1d_flux.screen.gz -rw-r--r-- root/root 4038 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/bar1d_frac_step.screen.gz -rw-r--r-- root/root 2777 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/bar1d_hoover.screen.gz -rw-r--r-- root/root 4360 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/bar1d_interpolate.screen.gz -rw-r--r-- root/root 5625 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/bar1d_lumped.screen.gz -rw-r--r-- root/root 3001 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d -rw-r--r-- root/root 1592 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_all_atoms.gz -rw-r--r-- root/root 3489 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_combined -rw-r--r-- root/root 3189 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_flux -rw-r--r-- root/root 3403 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_frac_step -rw-r--r-- root/root 1783 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_hoover.gz -rw-r--r-- root/root 3309 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_interpolate -rw-r--r-- root/root 3365 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_lumped -rw-r--r-- root/root 1792 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/in.no_atoms -rw-r--r-- root/root 5305 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/thermal/no_atoms.screen.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/two_temperature/ -rw-r--r-- root/root 553 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/two_temperature/Ar_ttm.mat -rw-r--r-- root/root 299 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/two_temperature/Cu_ttm.mat -rw-r--r-- root/root 9920 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/two_temperature/bar1d_ttm.screen.gz -rw-r--r-- root/root 3871 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/two_temperature/cutout.screen.gz -rw-r--r-- root/root 2528 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/two_temperature/gaussianIC_ttm.screen.gz -rw-r--r-- root/root 3246 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/two_temperature/in.bar1d_ttm -rw-r--r-- root/root 2415 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/two_temperature/in.cutout -rw-r--r-- root/root 2673 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/two_temperature/in.gaussianIC_ttm -rw-r--r-- root/root 2055 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/two_temperature/in.no_atoms -rw-r--r-- root/root 1478 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/two_temperature/in.restart.gz -rw-r--r-- root/root 1777 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/two_temperature/in.uniform_exchange -rw-r--r-- root/root 1912 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/two_temperature/in.uniform_heating -rw-r--r-- root/root 2970 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/two_temperature/no_atoms.screen.gz -rw-r--r-- root/root 2380 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/two_temperature/restart.screen.gz -rw-r--r-- root/root 11293 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/two_temperature/uniform_exchange.screen.gz -rw-r--r-- root/root 2213 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/atc/two_temperature/uniform_heating.screen.gz drwxr-xr-x root/root 0 2018-05-10 17:14 ./usr/share/doc/lammps/examples/USER/awpmd/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/awpmd/H/ -rw-r--r-- root/root 73 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/awpmd/H/README -rw-r--r-- root/root 378 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/awpmd/H/data.h_atom -rw-r--r-- root/root 645 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/awpmd/H/data.h_molecule -rw-r--r-- root/root 890 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/awpmd/H/in.h_atom -rw-r--r-- root/root 894 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/awpmd/H/in.h_molecule drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/bocs/ -rw-r--r-- root/root 405 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/bocs/README -rw-r--r-- root/root 2335 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/bocs/in.methanol -rw-r--r-- root/root 22868 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/bocs/lammps_nb_MET-MET.table.gz -rw-r--r-- root/root 2705 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/bocs/log.20Apr18.methanol.g++.1.gz -rw-r--r-- root/root 2785 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/bocs/log.20Apr18.methanol.g++.4.gz -rw-r--r-- root/root 9432 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/bocs/methanol.data.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/ -rw-r--r-- root/root 964 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/README drwxr-xr-x root/root 0 2018-05-10 17:14 ./usr/share/doc/lammps/examples/USER/cgdna/examples/ drwxr-xr-x root/root 0 2018-05-10 17:14 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/duplex1/ -rw-r--r-- root/root 840 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/duplex1/data.duplex1.gz -rw-r--r-- root/root 2877 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/duplex1/input.duplex1 -rw-r--r-- root/root 35145 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/duplex1/log.24Mar17.duplex1.g++.1.gz -rw-r--r-- root/root 35242 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/duplex1/log.24Mar17.duplex1.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/duplex2/ -rw-r--r-- root/root 1183 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/duplex2/data.duplex2.gz -rw-r--r-- root/root 2877 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/duplex2/input.duplex2 -rw-r--r-- root/root 39402 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/duplex2/log.24Mar17.duplex2.g++.1.gz -rw-r--r-- root/root 39422 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA/duplex2/log.24Mar17.duplex2.g++.4.gz drwxr-xr-x root/root 0 2018-05-10 17:14 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/duplex1/ -rw-r--r-- root/root 840 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/duplex1/data.duplex1.gz -rw-r--r-- root/root 2951 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/duplex1/input.duplex1 -rw-r--r-- root/root 34965 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/duplex1/log.24Mar17.duplex1.g++.1.gz -rw-r--r-- root/root 35024 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/duplex1/log.24Mar17.duplex1.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/duplex2/ -rw-r--r-- root/root 1183 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/duplex2/data.duplex2.gz -rw-r--r-- root/root 2951 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/duplex2/input.duplex2 -rw-r--r-- root/root 39378 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/duplex2/log.24Mar17.duplex2.g++.1.gz -rw-r--r-- root/root 39464 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/examples/oxDNA2/duplex2/log.24Mar17.duplex2.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/util/ -rw-r--r-- root/root 5737 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/util/generate.py.gz -rw-r--r-- root/root 2085 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/util/generate_simple.py.gz -rw-r--r-- root/root 2802 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/util/input.ref -rw-r--r-- root/root 20 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/util/sequence.txt -rw-r--r-- root/root 95 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgdna/util/sequence_simple.txt drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgsdk/ -rw-r--r-- root/root 737 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgsdk/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgsdk/peg-verlet/ -rw-r--r-- root/root 1018261 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgsdk/peg-verlet/data.pegc12e8.gz -rw-r--r-- root/root 729 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgsdk/peg-verlet/in.pegc12e8 -rw-r--r-- root/root 724 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgsdk/peg-verlet/in.pegc12e8-angle -rw-r--r-- root/root 1718 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgsdk/peg-verlet/log.pegc12e8-angle.gz -rw-r--r-- root/root 1723 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgsdk/peg-verlet/log.pegc12e8.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgsdk/sds-monolayer/ -rw-r--r-- root/root 2265929 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgsdk/sds-monolayer/data.sds.gz -rw-r--r-- root/root 1663 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgsdk/sds-monolayer/in.sds-hybrid -rw-r--r-- root/root 1375 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgsdk/sds-monolayer/in.sds-regular -rw-r--r-- root/root 2049 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgsdk/sds-monolayer/log.sds-hybrid.gz -rw-r--r-- root/root 1921 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/cgsdk/sds-monolayer/log.sds-regular.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/ -rw-r--r-- root/root 82437 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/data.peptide.gz -rw-r--r-- root/root 898 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/in.peptide-colvars -rw-r--r-- root/root 788 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/in.peptide-colvars2 -rw-r--r-- root/root 873 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/in.peptide-spring -rw-r--r-- root/root 758 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/in.peptide-spring2 -rw-r--r-- root/root 4306 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/log.peptide-colvars-1.gz -rw-r--r-- root/root 4366 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/log.peptide-colvars-4.gz -rw-r--r-- root/root 4900 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/log.peptide-colvars.gz -rw-r--r-- root/root 2591 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/log.peptide-colvars2-1.gz -rw-r--r-- root/root 2608 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/log.peptide-colvars2-4.gz -rw-r--r-- root/root 3096 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/log.peptide-colvars2.gz -rw-r--r-- root/root 2305 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/log.peptide-spring.gz -rw-r--r-- root/root 2269 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/log.peptide-spring2.gz -rw-r--r-- root/root 236 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/out.colvars.state -rw-r--r-- root/root 2057 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/out.colvars.traj.gz -rw-r--r-- root/root 236 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/out2.colvars.state -rw-r--r-- root/root 2041 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/out2.colvars.traj.gz -rw-r--r-- root/root 472 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/peptide.colvars -rw-r--r-- root/root 342 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/peptide.colvars2 -rw-r--r-- root/root 534 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/peptide.psf.gz -rw-r--r-- root/root 187 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/peptide2.colvars.state -rw-r--r-- root/root 3774 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/colvars/peptide2.colvars.traj drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/diffraction/ -rw-r--r-- root/root 796 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/diffraction/BulkNi.in drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/diffraction/Output/ -rw-r--r-- root/root 820 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/diffraction/Output/BulkNi.in -rw-r--r-- root/root 2799 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/diffraction/Output/bulkNi.hist.xrd.correct.gz -rw-r--r-- root/root 1864 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/diffraction/Output/bulkNi.log.correct -rw-r--r-- root/root 25677 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/diffraction/Output/bulkNi_001.saed.0.vtk.correct.gz -rw-r--r-- root/root 91543 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/diffraction/Output/bulkNi_001.saed.0_VisIt_Image.png -rw-r--r-- root/root 771 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/diffraction/Output/log.cite -rw-r--r-- root/root 2746 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/diffraction/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/ -rw-r--r-- root/root 600 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpd-shardlow/ -rw-r--r-- root/root 66374 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpd-shardlow/data.dpd.gz -rw-r--r-- root/root 671 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpd-shardlow/in.dpd-shardlow -rw-r--r-- root/root 4206 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpd-shardlow/log.dpd-shardlow.reference.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpd-vv/ -rw-r--r-- root/root 440238 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpd-vv/data.dpd.gz -rw-r--r-- root/root 634 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpd-vv/in.dpd-vv -rw-r--r-- root/root 6948 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpd-vv/log.dpd-vv.reference.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpde-shardlow/ -rw-r--r-- root/root 67595 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpde-shardlow/data.dpde.gz -rw-r--r-- root/root 782 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpde-shardlow/in.dpde-shardlow -rw-r--r-- root/root 3988 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpde-shardlow/log.dpde-shardlow.reference.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpde-vv/ -rw-r--r-- root/root 440238 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpde-vv/data.dpd.gz -rw-r--r-- root/root 757 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpde-vv/in.dpde-vv -rw-r--r-- root/root 9217 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpde-vv/log.dpde-vv.reference.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpdh-shardlow/ -rw-r--r-- root/root 438385 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpdh-shardlow/data.dpdh.gz -rw-r--r-- root/root 842 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpdh-shardlow/in.dpdh-shardlow -rw-r--r-- root/root 7119 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpdh-shardlow/log.dpdh-shardlow.reference.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpdp-shardlow/ -rw-r--r-- root/root 66374 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpdp-shardlow/data.dpd.gz -rw-r--r-- root/root 724 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpdp-shardlow/in.dpdp-shardlow -rw-r--r-- root/root 7882 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpdp-shardlow/log.dpdp-shardlow.reference.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpdrx-shardlow/ -rw-r--r-- root/root 1955 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpdrx-shardlow/in.dpdrx-shardlow -rw-r--r-- root/root 652 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpdrx-shardlow/kinetics.dpdrx -rw-r--r-- root/root 2174 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpdrx-shardlow/log.dpdrx-shardlow.reference.gz -rw-r--r-- root/root 683 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpdrx-shardlow/params.exp6 -rw-r--r-- root/root 430484 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpdrx-shardlow/table.eos.gz -rw-r--r-- root/root 539 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpdrx-shardlow/thermo.dpdrx -rw-r--r-- root/root 539 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/dpdrx-shardlow/thermo.dpdrx.new drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/multi-lucy/ -rw-r--r-- root/root 1251 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/multi-lucy/in.multi-lucy -rw-r--r-- root/root 7757 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/multi-lucy/log.multi-lucy.reference.gz -rw-r--r-- root/root 1816958 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/dpd/multi-lucy/table.multibody.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/ -rw-r--r-- root/root 548 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/butane/ -rw-r--r-- root/root 210383 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/butane/data.butane.gz -rw-r--r-- root/root 1605 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/butane/in.butane.lang -rw-r--r-- root/root 1771 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/butane/in.butane.nh -rw-r--r-- root/root 5036 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/butane/log.butane.lang.18Jul15.linux.1.gz -rw-r--r-- root/root 5032 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/butane/log.butane.lang.18Jul15.linux.4.gz -rw-r--r-- root/root 5244 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/butane/log.butane.nh.18Jul15.linux.3.gz -rw-r--r-- root/root 5241 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/butane/log.butane.nh.18Jul15.linux.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/ethanol/ -rw-r--r-- root/root 135870 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/ethanol/data.ethanol.gz -rw-r--r-- root/root 2740 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/ethanol/in.ethanol.lang -rw-r--r-- root/root 2900 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/ethanol/in.ethanol.nh -rw-r--r-- root/root 10824 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/ethanol/log.ethanol.lang.8Jul15.linux.1.gz -rw-r--r-- root/root 10785 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/ethanol/log.ethanol.lang.8Jul15.linux.4.gz -rw-r--r-- root/root 10923 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/ethanol/log.ethanol.nh.8Jul15.linux.1.gz -rw-r--r-- root/root 10940 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/ethanol/log.ethanol.nh.8Jul15.linux.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/swm4-ndp/ -rw-r--r-- root/root 74584 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/swm4-ndp/data.swm4-ndp.gz -rw-r--r-- root/root 934 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/swm4-ndp/in.swm4-ndp.lang -rw-r--r-- root/root 1062 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/swm4-ndp/in.swm4-ndp.nh -rw-r--r-- root/root 9294 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/swm4-ndp/log.swm4-ndp.lang.8Jul15.linux.1.gz -rw-r--r-- root/root 9302 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/swm4-ndp/log.swm4-ndp.lang.8Jul15.linux.4.gz -rw-r--r-- root/root 9561 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/swm4-ndp/log.swm4-ndp.nh.8Jul15.linux.1.gz -rw-r--r-- root/root 9564 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/swm4-ndp/log.swm4-ndp.nh.8Jul15.linux.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/toluene/ -rw-r--r-- root/root 276132 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/toluene/data.toluene.gz -rw-r--r-- root/root 1116 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/toluene/in.toluene.lang.gz -rw-r--r-- root/root 1175 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/toluene/in.toluene.nh.gz -rw-r--r-- root/root 6304 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/toluene/log.toluene.lang.11Aug17.linux.1.gz -rw-r--r-- root/root 6406 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/toluene/log.toluene.lang.11Aug17.linux.4.gz -rw-r--r-- root/root 6448 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/toluene/log.toluene.nh.11Aug17.linux.1.gz -rw-r--r-- root/root 6529 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/drude/toluene/log.toluene.nh.11Aug17.linux.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Auger-Adamantane/ -rw-r--r-- root/root 584 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Auger-Adamantane/README -rw-r--r-- root/root 1406 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Auger-Adamantane/data.adamantane.gz -rw-r--r-- root/root 1578 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Auger-Adamantane/data.adamantane_ionized.gz -rw-r--r-- root/root 1054 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Auger-Adamantane/in.adamantane_ionized.nve drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Be-solid/ -rw-r--r-- root/root 127 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Be-solid/README -rw-r--r-- root/root 93010 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Be-solid/data.Be-solid.gz -rw-r--r-- root/root 585 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Be-solid/in.Be-solid.spe drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/CH4/ -rw-r--r-- root/root 112 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/CH4/README -rw-r--r-- root/root 754 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/CH4/data.ch4 -rw-r--r-- root/root 1025 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/CH4/data.ch4_ionized -rw-r--r-- root/root 858 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/CH4/in.ch4.dynamics -rw-r--r-- root/root 752 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/CH4/in.ch4.min -rw-r--r-- root/root 792 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/CH4/in.ch4_ionized.dynamics drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/ECP/ -rw-r--r-- root/root 122 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/ECP/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/ECP/Si2H6/ -rw-r--r-- root/root 1233 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/ECP/Si2H6/data.Si2H6 -rw-r--r-- root/root 1313 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/ECP/Si2H6/data.Si2H6.ang -rw-r--r-- root/root 1242 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/ECP/Si2H6/in.Si2H6 -rw-r--r-- root/root 1588 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/ECP/Si2H6/in.Si2H6.ang drwxr-xr-x root/root 0 2018-05-10 17:14 ./usr/share/doc/lammps/examples/USER/eff/ECP/SiC/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/ECP/SiC/bulk/ -rw-r--r-- root/root 25033 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/ECP/SiC/bulk/data.SiC.gz -rw-r--r-- root/root 1312 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/ECP/SiC/bulk/in.SiC drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/ECP/SiH4/ -rw-r--r-- root/root 807 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/ECP/SiH4/data.SiH4 -rw-r--r-- root/root 848 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/ECP/SiH4/data.SiH4.ang -rw-r--r-- root/root 1267 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/ECP/SiH4/in.SiH4 -rw-r--r-- root/root 1246 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/ECP/SiH4/in.SiH4.ang drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/H/ -rw-r--r-- root/root 38 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/H/README -rw-r--r-- root/root 379 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/H/data.h_atom.ang -rw-r--r-- root/root 213 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/H/data.h_atom.bohr -rw-r--r-- root/root 891 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/H/in.h_atom.spe.ang -rw-r--r-- root/root 873 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/H/in.h_atom.spe.bohr drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/H2/ -rw-r--r-- root/root 103 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/H2/README -rw-r--r-- root/root 790 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/H2/data.h2.gz -rw-r--r-- root/root 1144 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/H2/in.h2 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/H_plasma/ -rw-r--r-- root/root 263 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/H_plasma/README -rw-r--r-- root/root 72008 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/H_plasma/data.h2bulk.ang.gz -rw-r--r-- root/root 71450 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/H_plasma/data.h2bulk.gz -rw-r--r-- root/root 1039 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/H_plasma/in.h2bulk.npt -rw-r--r-- root/root 915 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/H_plasma/in.h2bulk.nve -rw-r--r-- root/root 1472 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/H_plasma/in.h2bulk.nve.ang drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Li-dendritic/ -rw-r--r-- root/root 258 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Li-dendritic/README -rw-r--r-- root/root 18450 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Li-dendritic/data.Li-dendritic.gz -rw-r--r-- root/root 826 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Li-dendritic/in.Li-dendritic.min -rw-r--r-- root/root 1148 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Li-dendritic/in.Li-dendritic.nvt drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Li-solid/ -rw-r--r-- root/root 149 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Li-solid/README -rw-r--r-- root/root 9946 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Li-solid/data.Li.ang.gz -rw-r--r-- root/root 9943 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Li-solid/data.Li.bohr.gz -rw-r--r-- root/root 1550 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Li-solid/in.Li.ang -rw-r--r-- root/root 1305 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/Li-solid/in.Li.bohr -rw-r--r-- root/root 621 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/fixed-core/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/fixed-core/C2H6/ -rw-r--r-- root/root 1269 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/fixed-core/C2H6/data.C2H6fc.ang -rw-r--r-- root/root 1160 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/fixed-core/C2H6/data.C2H6fc.bohr -rw-r--r-- root/root 1605 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/fixed-core/C2H6/in.C2H6fc.ang -rw-r--r-- root/root 1452 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/fixed-core/C2H6/in.C2H6fc.bohr drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/fixed-core/CH4/ -rw-r--r-- root/root 888 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/fixed-core/CH4/data.CH4fc.ang -rw-r--r-- root/root 837 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/fixed-core/CH4/data.CH4fc.bohr -rw-r--r-- root/root 1501 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/fixed-core/CH4/in.CH4fc.ang -rw-r--r-- root/root 1565 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/fixed-core/CH4/in.CH4fc.bohr -rw-r--r-- root/root 945 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/fixed-core/CH4/in.CH4fc.spe.ang -rw-r--r-- root/root 934 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/fixed-core/CH4/in.CH4fc.spe.bohr -rw-r--r-- root/root 182 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/eff/fixed-core/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/ -rw-r--r-- root/root 3498 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/bar01/ -rw-r--r-- root/root 52924 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/bar01/bar01.lmp.gz -rw-r--r-- root/root 4063 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/bar01/in.bar01.lmp -rw-r--r-- root/root 62629 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/bar01/log.lammps.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/bar10/ -rw-r--r-- root/root 57746 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/bar10/bar10.lmp.gz -rw-r--r-- root/root 4063 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/bar10/in.bar10.lmp -rw-r--r-- root/root 62631 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/bar10/log.lammps.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fdti01/ -rw-r--r-- root/root 604 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fdti01/fdti01.lmp -rw-r--r-- root/root 1300 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fdti01/in.fdti01.lmp.gz -rw-r--r-- root/root 57511 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fdti01/log.lammps.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fdti10/ -rw-r--r-- root/root 606 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fdti10/fdti10.lmp -rw-r--r-- root/root 1303 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fdti10/in.fdti10.lmp.gz -rw-r--r-- root/root 57582 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fdti10/log.lammps.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fep01/ -rw-r--r-- root/root 33663 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fep01/data.0.lmp.gz -rw-r--r-- root/root 579 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fep01/fep01.lmp -rw-r--r-- root/root 1309 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fep01/in.fep01.gz -rw-r--r-- root/root 1299 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fep01/in.fep01.lmp.gz -rw-r--r-- root/root 57487 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fep01/log.lammps.gz -rw-r--r-- root/root 3199 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fep01/log.reference-omp.gz -rw-r--r-- root/root 3159 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fep01/log.reference.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fep10/ -rw-r--r-- root/root 575 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fep10/fep10.lmp -rw-r--r-- root/root 1303 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fep10/in.fep10.lmp.gz -rw-r--r-- root/root 57554 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/fep10/log.lammps.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/mols/ -rw-r--r-- root/root 1922 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/mols/CC-CO.ff -rw-r--r-- root/root 338 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/mols/CC-CO.zmat -rw-r--r-- root/root 338 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/mols/CO-CC.zmat -rw-r--r-- root/root 475 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/mols/README -rw-r--r-- root/root 33663 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/mols/data.0.lmp.gz -rw-r--r-- root/root 33672 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/mols/data.1.lmp.gz -rw-r--r-- root/root 329 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/mols/spce.ff -rw-r--r-- root/root 56 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CC-CO/mols/spce.zmat drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4-CF4/ -rw-r--r-- root/root 2502 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4-CF4/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4-CF4/bar01/ -rw-r--r-- root/root 57464 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4-CF4/bar01/bar01.lmp.gz -rw-r--r-- root/root 2596 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4-CF4/bar01/in.bar01.lmp -rw-r--r-- root/root 62359 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4-CF4/bar01/log.lammps.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4-CF4/bar10/ -rw-r--r-- root/root 53005 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4-CF4/bar10/bar10.lmp.gz -rw-r--r-- root/root 2596 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4-CF4/bar10/in.bar10.lmp -rw-r--r-- root/root 62176 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4-CF4/bar10/log.lammps.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4-CF4/mols/ -rw-r--r-- root/root 313 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4-CF4/mols/CF4-CH4.zmat -rw-r--r-- root/root 911 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4-CF4/mols/CH4-CF4.ff -rw-r--r-- root/root 313 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4-CF4/mols/CH4-CF4.zmat -rw-r--r-- root/root 33284 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4-CF4/mols/data.0.lmp.gz -rw-r--r-- root/root 33287 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4-CF4/mols/data.1.lmp.gz -rw-r--r-- root/root 329 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4-CF4/mols/spce.ff -rw-r--r-- root/root 56 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4-CF4/mols/spce.zmat drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/ -rw-r--r-- root/root 2249 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/fdti01/ -rw-r--r-- root/root 605 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/fdti01/fdti01.lmp -rw-r--r-- root/root 2216 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/fdti01/in.fdti01.lmp -rw-r--r-- root/root 31701 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/fdti01/log.lammps.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/fdti10/ -rw-r--r-- root/root 606 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/fdti10/fdti10.lmp -rw-r--r-- root/root 2193 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/fdti10/in.fdti10.lmp -rw-r--r-- root/root 31859 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/fdti10/log.lammps.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/fep01/ -rw-r--r-- root/root 577 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/fep01/fep01.lmp -rw-r--r-- root/root 2212 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/fep01/in.fep01.lmp -rw-r--r-- root/root 31689 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/fep01/log.lammps.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/fep10/ -rw-r--r-- root/root 583 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/fep10/fep10.lmp -rw-r--r-- root/root 2189 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/fep10/in.fep10.lmp -rw-r--r-- root/root 31846 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/fep10/log.lammps.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/mols/ -rw-r--r-- root/root 32385 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/mols/data.lmp.gz -rw-r--r-- root/root 141 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/mols/methane.zmat -rw-r--r-- root/root 3619 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/mols/oplsaa.ff -rw-r--r-- root/root 344 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/mols/tip4pew.ff -rw-r--r-- root/root 64 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/CH4hyd/mols/tip4pew.zmat -rw-r--r-- root/root 376 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/fep/README drwxr-xr-x root/root 0 2018-05-10 17:14 ./usr/share/doc/lammps/examples/USER/lb/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/confined_colloid/ -rw-r--r-- root/root 1800 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/confined_colloid/in.confined_colloids.gz -rw-r--r-- root/root 1406 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/confined_colloid/results64.out drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/dragforce/ -rw-r--r-- root/root 6679 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/dragforce/data.one_radius16d2.gz -rw-r--r-- root/root 269324 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/dragforce/defaultgamma_drag.out.gz -rw-r--r-- root/root 1491 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/dragforce/in.defaultgamma_drag.gz -rw-r--r-- root/root 3517 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/dragforce/in.setgamma_drag -rw-r--r-- root/root 241523 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/dragforce/setgamma13d0_drag.out.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/fourspheres/ -rw-r--r-- root/root 21299 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/fourspheres/data.four.gz -rw-r--r-- root/root 391530 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/fourspheres/fourspheres_velocity0d0001_defaultgamma.out.gz -rw-r--r-- root/root 390221 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/fourspheres/fourspheres_velocity0d0001_setgamma.out.gz -rw-r--r-- root/root 1495 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/fourspheres/in.fourspheres_default_gamma.gz -rw-r--r-- root/root 3884 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/fourspheres/in.fourspheres_set_gamma drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/microrheology/ -rw-r--r-- root/root 9316 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/microrheology/data.two.gz -rw-r--r-- root/root 1955 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/microrheology/in.microrheology_default_gamma.gz -rw-r--r-- root/root 1903 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/microrheology/in.microrheology_set_gamma.gz -rw-r--r-- root/root 1274987 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/microrheology/microrheology_defaultgamma.out.gz -rw-r--r-- root/root 1304007 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/microrheology/microrheology_setgamma.out.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/planewall/ -rw-r--r-- root/root 6684 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/planewall/data.one_radius16d2.gz -rw-r--r-- root/root 1642 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/planewall/in.planewall_default_gamma.gz -rw-r--r-- root/root 1541 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/planewall/in.planewall_set_gamma.gz -rw-r--r-- root/root 486826 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/planewall/wall_defaultgamma.out.gz -rw-r--r-- root/root 410192 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/planewall/wall_setgamma.out.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/polymer/ -rw-r--r-- root/root 8860 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/polymer/data.polymer.gz -rw-r--r-- root/root 1889 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/polymer/in.polymer_default_gamma.gz -rw-r--r-- root/root 1795 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/polymer/in.polymer_setgamma.gz -rw-r--r-- root/root 2815 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/polymer/out.polymer_default_gamma -rw-r--r-- root/root 2762 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/lb/polymer/out.polymer_setgamma drwxr-xr-x root/root 0 2018-05-10 17:14 ./usr/share/doc/lammps/examples/USER/manifold/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/diffusion/ -rw-r--r-- root/root 218 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/diffusion/README -rw-r--r-- root/root 134117 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/diffusion/msd.cyl.data.gz -rw-r--r-- root/root 681 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/diffusion/msd.cyl.in -rw-r--r-- root/root 143567 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/diffusion/msd.pdf.gz -rw-r--r-- root/root 30783 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/diffusion/msd.plane.data.gz -rw-r--r-- root/root 589 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/diffusion/msd.plane.in -rw-r--r-- root/root 29462 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/diffusion/msd.sphere.data.gz -rw-r--r-- root/root 614 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/diffusion/msd.sphere.in -rw-r--r-- root/root 65813 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/diffusion/msd_plot2.pdf.gz -rw-r--r-- root/root 1986 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/diffusion/plot_msd.gpl drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/energy/ -rw-r--r-- root/root 229 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/energy/README -rw-r--r-- root/root 34477 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/energy/cylinder.data.gz -rw-r--r-- root/root 77 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/energy/cylinder.setup -rw-r--r-- root/root 594 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/energy/energy.in -rw-r--r-- root/root 481 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/energy/energy.plane.in -rw-r--r-- root/root 1116 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/energy/energy.sh -rw-r--r-- root/root 1002478 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/energy/energy_conservation.pdf.gz -rw-r--r-- root/root 85635 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/energy/energy_conservation.png -rw-r--r-- root/root 25032 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/energy/plane.anneal.data.gz -rw-r--r-- root/root 25004 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/energy/plane.data.gz -rw-r--r-- root/root 2766 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/energy/plot_energies.gpl -rw-r--r-- root/root 34496 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/energy/sphere.data.gz -rw-r--r-- root/root 76 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/energy/sphere.setup -rw-r--r-- root/root 34478 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/energy/torus.data.gz -rw-r--r-- root/root 79 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/energy/torus.setup drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/thylakoid/ -rw-r--r-- root/root 237 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/thylakoid/README -rw-r--r-- root/root 220272 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/thylakoid/thylakoid.data.gz -rw-r--r-- root/root 712 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/thylakoid/thylakoid.in drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/virus/ -rw-r--r-- root/root 110 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/virus/README -rw-r--r-- root/root 7337 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/virus/init.data.gz -rw-r--r-- root/root 1478 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/manifold/virus/vir.in drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/meso/ -rw-r--r-- root/root 2259 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/meso/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/meso/edpd/ -rw-r--r-- root/root 2297 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/meso/edpd/in.edpd -rw-r--r-- root/root 2153 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/meso/edpd/log.16Aug17.edpd.g++.1.gz -rw-r--r-- root/root 2325 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/meso/edpd/log.16Aug17.edpd.g++.4.gz -rw-r--r-- root/root 824 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/meso/edpd/temp.profile.16Aug17.edpd.g++.1 -rw-r--r-- root/root 817 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/meso/edpd/temp.profile.16Aug17.edpd.g++.4 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/meso/mdpd/ -rw-r--r-- root/root 2019 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/meso/mdpd/in.mdpd -rw-r--r-- root/root 2732 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/meso/mdpd/log.16Aug17.mdpd.g++.1.gz -rw-r--r-- root/root 2813 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/meso/mdpd/log.16Aug17.mdpd.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/meso/tdpd/ -rw-r--r-- root/root 795 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/meso/tdpd/cc.profile.16Aug17.tdpd.g++.1 -rw-r--r-- root/root 793 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/meso/tdpd/cc.profile.16Aug17.tdpd.g++.4 -rw-r--r-- root/root 2328 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/meso/tdpd/in.tdpd -rw-r--r-- root/root 2204 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/meso/tdpd/log.16Aug17.tdpd.g++.1.gz -rw-r--r-- root/root 2352 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/meso/tdpd/log.16Aug17.tdpd.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/mgpt/ -rw-r--r-- root/root 3005 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/mgpt/Ta6.8x.mgpt.README -rw-r--r-- root/root 72 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/mgpt/Ta6.8x.mgpt.parmin -rw-r--r-- root/root 193259 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/mgpt/Ta6.8x.mgpt.potin.gz -rw-r--r-- root/root 1822 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/mgpt/in.bcc0 -rw-r--r-- root/root 2185 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/mgpt/in.vac0-bcc -rw-r--r-- root/root 2111 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/mgpt/in.vacmin-bcc -rw-r--r-- root/root 1993 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/mgpt/log.bcc0 -rw-r--r-- root/root 2125 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/mgpt/log.vac0-bcc -rw-r--r-- root/root 3575 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/mgpt/log.vacmin-bcc drwxr-xr-x root/root 0 2018-05-10 17:14 ./usr/share/doc/lammps/examples/USER/misc/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/addtorque/ -rw-r--r-- root/root 1918 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/addtorque/in.addtorque -rw-r--r-- root/root 4317 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/addtorque/log.9Nov16.addtorque.g++.1.gz -rw-r--r-- root/root 4503 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/addtorque/log.9Nov16.addtorque.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/agni/ -rw-r--r-- root/root 339469 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/agni/Al_jpc.agni.gz -rw-r--r-- root/root 1185 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/agni/adatom.data.gz -rw-r--r-- root/root 406 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/agni/in.adatom -rw-r--r-- root/root 398 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/agni/in.vacancy -rw-r--r-- root/root 2688 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/agni/log.21Feb17.adatom.g++.1 -rw-r--r-- root/root 2686 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/agni/log.21Feb17.adatom.g++.4 -rw-r--r-- root/root 2821 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/agni/log.21Feb17.vacancy.g++.1 -rw-r--r-- root/root 2824 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/agni/log.21Feb17.vacancy.g++.4 -rw-r--r-- root/root 1588 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/agni/vacancy.data drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/basal/ -rw-r--r-- root/root 32956 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/basal/almg.liu.gz -rw-r--r-- root/root 2246 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/basal/in.basal.gz drwxr-xr-x root/root 0 2018-05-10 17:14 ./usr/share/doc/lammps/examples/USER/misc/bond_react/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/ -rw-r--r-- root/root 1162 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/in.large_nylon_melt -rw-r--r-- root/root 3745205 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/large_nylon_melt.data.gz -rw-r--r-- root/root 2239 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/log.20Apr18.large_nylon_melt.g++.1.gz -rw-r--r-- root/root 2329 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/log.20Apr18.large_nylon_melt.g++.4.gz -rw-r--r-- root/root 200 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp1_map -rw-r--r-- root/root 2522 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp1_reacted.data_template -rw-r--r-- root/root 2084 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp1_unreacted.data_template -rw-r--r-- root/root 181 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp2_map -rw-r--r-- root/root 1682 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp2_reacted.data_template -rw-r--r-- root/root 2075 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp2_unreacted.data_template drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/ -rw-r--r-- root/root 1022 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/in.tiny_nylon -rw-r--r-- root/root 5241 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/log.20Apr18.tiny_nylon.g++.1.gz -rw-r--r-- root/root 5312 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/log.20Apr18.tiny_nylon.g++.4.gz -rw-r--r-- root/root 200 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/rxn1_stp1_map -rw-r--r-- root/root 2460 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/rxn1_stp1_reacted.data_template -rw-r--r-- root/root 2031 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/rxn1_stp1_unreacted.data_template -rw-r--r-- root/root 181 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/rxn1_stp2_map -rw-r--r-- root/root 1626 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/rxn1_stp2_reacted.data_template -rw-r--r-- root/root 2013 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/rxn1_stp2_unreacted.data_template -rw-r--r-- root/root 7822 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/bond_react/tiny_nylon/tiny_nylon.data.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/cnp/ -rw-r--r-- root/root 235378 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/cnp/Cu_Mishin1.eam.gz -rw-r--r-- root/root 1754 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/cnp/in.cnp -rw-r--r-- root/root 3021 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/cnp/log.31May17.cnp.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/edip/ -rw-r--r-- root/root 1046 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/edip/Si.edip -rw-r--r-- root/root 1781 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/edip/SiC.edip -rw-r--r-- root/root 2598 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/edip/data.SiC.gz -rw-r--r-- root/root 1494 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/edip/in.edip-Si -rw-r--r-- root/root 1500 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/edip/in.edip-Si-multi -rw-r--r-- root/root 550 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/edip/in.edip-SiC -rw-r--r-- root/root 2863 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/edip/log.4May2017.g++.edip-Si-multi.1.gz -rw-r--r-- root/root 2930 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/edip/log.4May2017.g++.edip-Si-multi.4.gz -rw-r--r-- root/root 2860 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/edip/log.4May2017.g++.edip-Si.1.gz -rw-r--r-- root/root 2927 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/edip/log.4May2017.g++.edip-Si.4.gz -rw-r--r-- root/root 3252 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/edip/log.4May2017.g++.edip-SiC.1 -rw-r--r-- root/root 3248 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/edip/log.4May2017.g++.edip-SiC.4 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ees/ -rw-r--r-- root/root 397 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ees/Data_region -rw-r--r-- root/root 269 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ees/Data_wall -rw-r--r-- root/root 550 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ees/README -rw-r--r-- root/root 876 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ees/in.fix_wall -rw-r--r-- root/root 885 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ees/in.fix_wall_region -rw-r--r-- root/root 2770 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ees/log.23Jun17.fix_wall.g++.1.gz -rw-r--r-- root/root 2834 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ees/log.23Jun17.fix_wall.g++.4.gz -rw-r--r-- root/root 3637 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ees/log.23Jun17.fix_wall_region.g++.1.gz -rw-r--r-- root/root 3709 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ees/log.23Jun17.fix_wall_region.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/extep/ -rw-r--r-- root/root 700 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/extep/BN.data.gz -rw-r--r-- root/root 715 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/extep/in.extep-bn -rw-r--r-- root/root 6196 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/extep/log.23Oct17.extep-bn.g++.1.gz -rw-r--r-- root/root 6259 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/extep/log.23Oct17.extep-bn.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/filter_corotate/ -rw-r--r-- root/root 65976 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/filter_corotate/data.bpti.gz -rw-r--r-- root/root 82437 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/filter_corotate/data.peptide.gz -rw-r--r-- root/root 811 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/filter_corotate/in.bpti -rw-r--r-- root/root 654 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/filter_corotate/in.peptide -rw-r--r-- root/root 3313 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/filter_corotate/log.22Jun2017.bpti.g++.1.gz -rw-r--r-- root/root 3486 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/filter_corotate/log.22Jun2017.bpti.g++.4.gz -rw-r--r-- root/root 2418 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/filter_corotate/log.22Jun2017.peptide.g++.1.gz -rw-r--r-- root/root 2533 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/filter_corotate/log.22Jun2017.peptide.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/flow_gauss/ -rw-r--r-- root/root 1943 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/flow_gauss/README -rw-r--r-- root/root 2640 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/flow_gauss/in.GD.gz -rw-r--r-- root/root 13755 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/flow_gauss/log.6Jul17.GD.g++.1.gz -rw-r--r-- root/root 13969 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/flow_gauss/log.6Jul17.GD.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/flow_gauss/output-files/ -rw-r--r-- root/root 1110 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/flow_gauss/output-files/GD.out -rw-r--r-- root/root 3160 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/flow_gauss/output-files/Vy_profile -rw-r--r-- root/root 1978 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/flow_gauss/output-files/x_profiles drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/gauss_diel/ -rw-r--r-- root/root 137821 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/gauss_diel/data.gauss-diel.gz -rw-r--r-- root/root 3943 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/gauss_diel/in.gauss-diel -rw-r--r-- root/root 3962 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/gauss_diel/in.gauss-diel-cg -rw-r--r-- root/root 901 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/gauss_diel/in.gauss-diel-split.gz -rw-r--r-- root/root 3388 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/gauss_diel/log.gauss-diel -rw-r--r-- root/root 3494 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/gauss_diel/log.gauss-diel-cg -rw-r--r-- root/root 3493 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/gauss_diel/log.gauss-diel-split drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/gle/ -rw-r--r-- root/root 4817 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/gle/data.h2o-quantum.gz -rw-r--r-- root/root 4826 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/gle/data.h2o-smart.gz -rw-r--r-- root/root 925 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/gle/in.h2o-quantum -rw-r--r-- root/root 935 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/gle/in.h2o-smart -rw-r--r-- root/root 4274 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/gle/log.h2o-quantum.gz -rw-r--r-- root/root 4089 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/gle/log.h2o-smart.gz -rw-r--r-- root/root 1036 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/gle/qt-300k.A -rw-r--r-- root/root 1036 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/gle/qt-300k.C -rw-r--r-- root/root 1036 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/gle/smart.A drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/ -rw-r--r-- root/root 3753 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/400/ -rw-r--r-- root/root 34644 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/400/restart.init.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/405/ -rw-r--r-- root/root 34678 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/405/restart.init.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/410/ -rw-r--r-- root/root 34551 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/410/restart.init.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/415/ -rw-r--r-- root/root 34657 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/415/restart.init.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/420/ -rw-r--r-- root/root 34590 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/420/restart.init.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/425/ -rw-r--r-- root/root 34613 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/425/restart.init.gz -rw-r--r-- root/root 217 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/clean.sh -rw-r--r-- root/root 1912 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/double-re-short.py.gz -rw-r--r-- root/root 666 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/in.gREM -rw-r--r-- root/root 188 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/run.sh -rw-r--r-- root/root 12 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-6rep/walker.bkp drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-single/ -rw-r--r-- root/root 495 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-single/in.gREM-npt -rw-r--r-- root/root 429 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-single/in.gREM-nvt -rw-r--r-- root/root 34772 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-single/lj.data.gz -rw-r--r-- root/root 3871 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-single/log.gREM-npt.9Nov16.g++.1.gz -rw-r--r-- root/root 3941 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-single/log.gREM-npt.9Nov16.g++.4.gz -rw-r--r-- root/root 3528 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-single/log.gREM-nvt.9Nov16.g++.1.gz -rw-r--r-- root/root 3605 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-single/log.gREM-nvt.9Nov16.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/0/ -rw-r--r-- root/root 34721 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/0/lj.data.gz -rw-r--r-- root/root 31132 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/0/log.lammps.0.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/1/ -rw-r--r-- root/root 34746 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/1/lj.data.gz -rw-r--r-- root/root 31549 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/1/log.lammps.1.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/2/ -rw-r--r-- root/root 34754 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/2/lj.data.gz -rw-r--r-- root/root 31664 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/2/log.lammps.2.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/3/ -rw-r--r-- root/root 34729 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/3/lj.data.gz -rw-r--r-- root/root 30880 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/3/log.lammps.3.gz -rw-r--r-- root/root 843 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/grem/lj-temper/in.gREM-temper drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/ lrwxrwxrwx root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/BNC.tersoff -> ../../../../potentials/BNC.tersoff lrwxrwxrwx root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/BNCH-old.ILP -> ../../../../potentials/BNCH-old.ILP drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/bilayer-graphene/ lrwxrwxrwx root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/bilayer-graphene/BNCH-old.ILP -> ../../../../../potentials/BNCH-old.ILP -rw-r--r-- root/root 53963 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/bilayer-graphene/Bi_gr_AB_stack_2L_noH_300K.data.gz lrwxrwxrwx root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/bilayer-graphene/CH.airebo -> ../../../../../potentials/CH.airebo -rw-r--r-- root/root 2123 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/bilayer-graphene/in.bilayer-graphene -rw-r--r-- root/root 2837 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/bilayer-graphene/log.16Mar18.bilayer-graphene.g++.1.gz -rw-r--r-- root/root 2914 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/bilayer-graphene/log.16Mar18.bilayer-graphene.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/gr-hBN/ lrwxrwxrwx root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/gr-hBN/BNC.tersoff -> ../../../../../potentials/BNC.tersoff lrwxrwxrwx root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/gr-hBN/BNCH-old.ILP -> ../../../../../potentials/BNCH-old.ILP lrwxrwxrwx root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/gr-hBN/CH.airebo -> ../../../../../potentials/CH.airebo -rw-r--r-- root/root 9686 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/gr-hBN/gr_hBN_Cstack_2L_noH.data.gz -rw-r--r-- root/root 2599 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/gr-hBN/in.grhBN -rw-r--r-- root/root 3325 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/gr-hBN/log.16Mar18.grhBN.g++.1.gz -rw-r--r-- root/root 3380 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/gr-hBN/log.16Mar18.grhBN.g++.4.gz -rw-r--r-- root/root 54111 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/hBN_AB_stack_2L_noH_equi_300K.data.gz -rw-r--r-- root/root 2708 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/in.ilp_graphene_hbn -rw-r--r-- root/root 3498 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/log.16Mar18.ilp_gr_hBN.g++.1.gz -rw-r--r-- root/root 3573 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ilp_graphene_hbn/log.16Mar18.ilp_gr_hBN.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/ -rw-r--r-- root/root 2377 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/README -rw-r--r-- root/root 39945 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/bucky-plus-cnt-mol.psf.gz -rw-r--r-- root/root 1435 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/bucky_cnt_imd.vmd -rw-r--r-- root/root 63393 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/data.bucky-plus-cnt.gz -rw-r--r-- root/root 430820 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/data.deca-ala-solv.gz -rw-r--r-- root/root 76454 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/deca-ala-solv.psf.gz -rw-r--r-- root/root 721 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/deca-ala-solv_imd-demo.vmd -rw-r--r-- root/root 2931 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/deca-ala.psf.gz -rw-r--r-- root/root 353 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/deca-ala_imd-demo.vmd -rw-r--r-- root/root 215 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/falcon.tcl -rw-r--r-- root/root 1447 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/in.bucky-plus-cnt -rw-r--r-- root/root 1520 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/in.bucky-plus-cnt-gpu -rw-r--r-- root/root 687 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/in.deca-ala-solv-filter_imd -rw-r--r-- root/root 673 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/in.deca-ala-solv_imd -rw-r--r-- root/root 677 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/in.deca-ala_imd -rw-r--r-- root/root 755 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/in.deca-ala_imd-gpu -rw-r--r-- root/root 462 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/in.melt_imd -rw-r--r-- root/root 520 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/in.melt_imd-gpu -rw-r--r-- root/root 11107 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/melt.psf.gz -rw-r--r-- root/root 437 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/imd/melt_imd-demo.vmd drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ipi/ -rw-r--r-- root/root 1405 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ipi/C.opt.tersoff.gz -rw-r--r-- root/root 1520 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ipi/README -rw-r--r-- root/root 63718 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ipi/data.graphene.gz -rw-r--r-- root/root 1860 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ipi/i-pi_input.xml -rw-r--r-- root/root 11016 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ipi/i-pi_positions.xyz.gz -rw-r--r-- root/root 959 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ipi/in.graphene drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_full/ -rw-r--r-- root/root 53963 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_full/Bi_gr_AB_stack_2L_noH_300K.data.gz lrwxrwxrwx root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_full/CC.KC-full -> ../../../../potentials/CC.KC-full -rw-r--r-- root/root 2114 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_full/in.bilayer-graphene -rw-r--r-- root/root 2821 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_full/log.16Mar18.bilayer-graphene.g++.1.gz -rw-r--r-- root/root 2894 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_full/log.16Mar18.bilayer-graphene.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/ lrwxrwxrwx root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/CC.KC -> ../../../../potentials/CC.KC lrwxrwxrwx root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/CH.airebo -> ../../../../potentials/CH.airebo -rw-r--r-- root/root 1533 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/data.bilayer-graphene.gz -rw-r--r-- root/root 847 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/data.graphene-adsorbant.gz -rw-r--r-- root/root 1533 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/in.atom-diffusion -rw-r--r-- root/root 1557 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/in.bilayer-graphene -rw-r--r-- root/root 3927 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/log.16Mar18.atom-diffusion.g++.1.gz -rw-r--r-- root/root 3999 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/log.16Mar18.atom-diffusion.g++.4.gz -rw-r--r-- root/root 4916 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/log.16Mar18.bilayer-graphene.g++.1.gz -rw-r--r-- root/root 4960 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/kolmogorov_crespi_z/log.16Mar18.bilayer-graphene.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_spline/ -rw-r--r-- root/root 1832 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_spline/Si_1.meam.spline.gz -rw-r--r-- root/root 4012 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_spline/TiO.meam.spline -rw-r--r-- root/root 374 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_spline/in.meam-spline.Si -rw-r--r-- root/root 2234 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_spline/in.meam-spline.TiO2 -rw-r--r-- root/root 3272 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_spline/log.4May2017.meam-spline.Si.g++.1 -rw-r--r-- root/root 3273 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_spline/log.4May2017.meam-spline.Si.g++.4 -rw-r--r-- root/root 3347 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_spline/log.4May2017.meam-spline.TiO2.g++.1.gz -rw-r--r-- root/root 3539 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_spline/log.4May2017.meam-spline.TiO2.g++.4.gz drwxr-xr-x root/root 0 2018-05-10 17:14 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/ -rw-r--r-- root/root 883 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/bcc.in -rw-r--r-- root/root 991 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/bcc_relax.in -rw-r--r-- root/root 909 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/dc.in -rw-r--r-- root/root 1047 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/dc_relax.in -rw-r--r-- root/root 808 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/energy_conservation.meam.sw.in -rw-r--r-- root/root 889 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/fcc.in -rw-r--r-- root/root 1005 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/fcc_relax.in -rw-r--r-- root/root 1285 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/hcp_relax.in -rw-r--r-- root/root 885 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/sc.in -rw-r--r-- root/root 990 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/sc_relax.in -rw-r--r-- root/root 663 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Si/single_atom.in drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Ti/ -rw-r--r-- root/root 744 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Ti/alpha.in -rw-r--r-- root/root 1224 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Ti/alpha_relaxation.in -rw-r--r-- root/root 629 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Ti/beta.in -rw-r--r-- root/root 1950 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Ti/energy_conservation.meam.sw.in -rw-r--r-- root/root 623 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Ti/fcc.in -rw-r--r-- root/root 708 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Ti/hexagonal.in -rw-r--r-- root/root 753 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Ti/omega.in -rw-r--r-- root/root 660 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/meam_sw_spline/Ti/single_atom.in drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/momb/ -rw-r--r-- root/root 446029 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/momb/Ag_O1X5.5_O2X0.55.eam.fs.gz -rw-r--r-- root/root 993 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/momb/README -rw-r--r-- root/root 2793 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/momb/in.system.gz -rw-r--r-- root/root 5196 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/momb/log.17Mar2017.system.g++.1.gz -rw-r--r-- root/root 5362 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/momb/log.17Mar2017.system.g++.4.gz -rw-r--r-- root/root 571658 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/momb/system.data.gz drwxr-xr-x root/root 0 2018-05-10 17:14 ./usr/share/doc/lammps/examples/USER/misc/pimd/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/pimd/para-h2/ -rw-r--r-- root/root 1527 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/pimd/para-h2/H2.data.gz -rw-r--r-- root/root 584 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/pimd/para-h2/H2.xyz.gz -rw-r--r-- root/root 1004 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/pimd/para-h2/NM.info -rw-r--r-- root/root 613 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/pimd/para-h2/in.scp -rw-r--r-- root/root 276860 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/pimd/para-h2/pair.table.gz -rw-r--r-- root/root 94 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/pimd/para-h2/run.sh -rw-r--r-- root/root 2930 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/pimd/para-h2/vmd.src drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/pimd/prot-hairpin/ -rw-r--r-- root/root 710 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/pimd/prot-hairpin/in.scp -rw-r--r-- root/root 93 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/pimd/prot-hairpin/run.sh -rw-r--r-- root/root 359061 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/pimd/prot-hairpin/system.data.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/rhok/ -rw-r--r-- root/root 2941 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/rhok/README.md -rw-r--r-- root/root 854 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/rhok/in.crystal -rw-r--r-- root/root 806 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/rhok/in.pinning -rw-r--r-- root/root 919 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/rhok/in.setup -rw-r--r-- root/root 3691 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/rhok/log.22Sep2017.crystal.g++.1.gz -rw-r--r-- root/root 3754 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/rhok/log.22Sep2017.crystal.g++.4.gz -rw-r--r-- root/root 6015 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/rhok/log.22Sep2017.pinning.g++.1.gz -rw-r--r-- root/root 6107 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/rhok/log.22Sep2017.pinning.g++.4.gz -rw-r--r-- root/root 2358 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/rhok/log.22Sep2017.setup.g++.1.gz -rw-r--r-- root/root 2431 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/rhok/log.22Sep2017.setup.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/srp/ -rw-r--r-- root/root 221589 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/srp/data.chain.gz -rw-r--r-- root/root 954 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/srp/in.srp drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/temper_npt/ -rw-r--r-- root/root 82437 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/temper_npt/data.peptide.gz -rw-r--r-- root/root 813 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/temper_npt/in.temper_npt -rw-r--r-- root/root 524 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/temper_npt/log.temper_npt-17Aug17.g++.8 -rw-r--r-- root/root 4032 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/temper_npt/log.temper_npt-17Aug17.g++.8.0.gz -rw-r--r-- root/root 4053 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/temper_npt/log.temper_npt-17Aug17.g++.8.1.gz -rw-r--r-- root/root 4030 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/temper_npt/log.temper_npt-17Aug17.g++.8.2.gz -rw-r--r-- root/root 4020 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/temper_npt/log.temper_npt-17Aug17.g++.8.3.gz -rw-r--r-- root/root 4077 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/temper_npt/log.temper_npt-17Aug17.g++.8.4.gz -rw-r--r-- root/root 4073 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/temper_npt/log.temper_npt-17Aug17.g++.8.5.gz -rw-r--r-- root/root 4066 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/temper_npt/log.temper_npt-17Aug17.g++.8.6.gz -rw-r--r-- root/root 4052 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/temper_npt/log.temper_npt-17Aug17.g++.8.7.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ti/ -rw-r--r-- root/root 2588 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/misc/ti/in.ti_spring drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/mofff/ -rw-r--r-- root/root 54041 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/mofff/hkust1.data.gz -rw-r--r-- root/root 1882 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/mofff/in.hkust1.gz -rw-r--r-- root/root 1901 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/mofff/in.hkust1_long.gz -rw-r--r-- root/root 2863 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/mofff/log.17Jan18.hkust1.g++.1.gz -rw-r--r-- root/root 2873 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/mofff/log.17Jan18.hkust1.g++.4.gz -rw-r--r-- root/root 3063 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/mofff/log.17Jan18.hkust1_long.g++.1.gz -rw-r--r-- root/root 3071 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/mofff/log.17Jan18.hkust1_long.g++.4.gz drwxr-xr-x root/root 0 2018-05-10 17:14 ./usr/share/doc/lammps/examples/USER/phonon/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/ -rw-r--r-- root/root 1754 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/README -rw-r--r-- root/root 1387 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/data.pos -rw-r--r-- root/root 485 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/disp.dat -rw-r--r-- root/root 1020 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/in.Ana -rw-r--r-- root/root 43 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/in.disp -rw-r--r-- root/root 347260 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/log.lammps.gz -rw-r--r-- root/root 212 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/map.in -rw-r--r-- root/root 4698 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/pdisp.eps.gz -rw-r--r-- root/root 262 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/pdisp.gnuplot -rw-r--r-- root/root 384 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/phonon.bin.2000000 -rw-r--r-- root/root 3153 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/phonon.log -rw-r--r-- root/root 456 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/1-1D-mono/plot.disp drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/ -rw-r--r-- root/root 1597 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/README -rw-r--r-- root/root 806 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/data.pos.gz -rw-r--r-- root/root 1253 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/disp.dat -rw-r--r-- root/root 951 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/in.Ana -rw-r--r-- root/root 43 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/in.disp -rw-r--r-- root/root 341394 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/log.lammps.gz -rw-r--r-- root/root 766 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/map.in -rw-r--r-- root/root 4986 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/pdisp.eps.gz -rw-r--r-- root/root 282 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/pdisp.gnuplot -rw-r--r-- root/root 2196 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/phonon.bin.2000000 -rw-r--r-- root/root 2684 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/phonon.log.gz -rw-r--r-- root/root 630 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/2-1D-diatomic/plot.disp drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/ -rw-r--r-- root/root 37528 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/CuPhonon.bin.6500000.gz -rw-r--r-- root/root 351164 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/CuPhonon.log.gz -rw-r--r-- root/root 2394 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/README -rw-r--r-- root/root 15698 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/cuu3.eam.gz -rw-r--r-- root/root 2841 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/data.pos.gz -rw-r--r-- root/root 2450 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/disp-expr.dat -rw-r--r-- root/root 1751 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/disp-ld.dat.gz -rw-r--r-- root/root 4895 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/disp.dat.gz -rw-r--r-- root/root 2815 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/dos-expr.dat -rw-r--r-- root/root 1726 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/dos-ld.dat -rw-r--r-- root/root 1654 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/dos.dat -rw-r--r-- root/root 813 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/in.EAM3D -rw-r--r-- root/root 237 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/in.disp -rw-r--r-- root/root 19 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/in.disp2 -rw-r--r-- root/root 44 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/in.dos -rw-r--r-- root/root 1527 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/map.in.gz -rw-r--r-- root/root 5956 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/pdisp.eps.gz -rw-r--r-- root/root 454 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/pdisp.gnuplot -rw-r--r-- root/root 5105 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/pdos.eps.gz -rw-r--r-- root/root 605 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/plot.disp -rw-r--r-- root/root 309 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/3-3D-FCC-Cu-EAM/plot.dos drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/4-Graphene/ -rw-r--r-- root/root 30594 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/4-Graphene/Graphene.bin.6000000.gz -rw-r--r-- root/root 216806 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/4-Graphene/Graphene.log.gz -rw-r--r-- root/root 1524 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/4-Graphene/README -rw-r--r-- root/root 1568 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/4-Graphene/SiC.tersoff -rw-r--r-- root/root 1430 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/4-Graphene/data.pos.gz -rw-r--r-- root/root 197 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/4-Graphene/in.disp -rw-r--r-- root/root 939 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/4-Graphene/in.graphene -rw-r--r-- root/root 2338 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/4-Graphene/map.in -rw-r--r-- root/root 3904 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/4-Graphene/pdisp.dat -rw-r--r-- root/root 6672 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/4-Graphene/pdisp.eps.gz -rw-r--r-- root/root 402 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/4-Graphene/pdisp.gnuplot -rw-r--r-- root/root 586 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/phonon/4-Graphene/plot.disp drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/qtb/ -rw-r--r-- root/root 382 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/qtb/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/qtb/alpha_quartz_qbmsst/ -rw-r--r-- root/root 857 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/qtb/alpha_quartz_qbmsst/alpha_quartz_potential.mod -rw-r--r-- root/root 3391 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/qtb/alpha_quartz_qbmsst/alpha_quartz_qbmsst.in -rw-r--r-- root/root 2201 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/qtb/alpha_quartz_qbmsst/alpha_quartz_qtb.mod -rw-r--r-- root/root 411942 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/qtb/alpha_quartz_qbmsst/potential_SiO2.TPF.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/qtb/alpha_quartz_qtb/ -rw-r--r-- root/root 3226 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/qtb/alpha_quartz_qtb/alpha_quartz_qtb.in drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/qtb/methane_qbmsst/ -rw-r--r-- root/root 3427 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/qtb/methane_qbmsst/ffield.reax.gz -rw-r--r-- root/root 2282 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/qtb/methane_qbmsst/methane_qbmsst.in -rw-r--r-- root/root 1771 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/qtb/methane_qbmsst/methane_qtb.mod drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/qtb/methane_qtb/ -rw-r--r-- root/root 3427 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/qtb/methane_qtb/ffield.reax.gz -rw-r--r-- root/root 2259 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/qtb/methane_qtb/methane_qtb.in drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/quip/ -rw-r--r-- root/root 2600 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/quip/data_gap -rw-r--r-- root/root 579 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/quip/data_sw -rw-r--r-- root/root 10490 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/quip/gap_example.xml.gz -rw-r--r-- root/root 305757 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/quip/gap_example_sparse.dat.gz -rw-r--r-- root/root 344 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/quip/in.gap -rw-r--r-- root/root 1509 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/quip/in.molecular -rw-r--r-- root/root 337 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/quip/in.sw -rw-r--r-- root/root 2515 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/quip/log.24Jul17.gap.g++.1 -rw-r--r-- root/root 2511 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/quip/log.24Jul17.gap.g++.4 -rw-r--r-- root/root 2360 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/quip/log.24Jul17.molecular.g++.1.gz -rw-r--r-- root/root 2418 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/quip/log.24Jul17.molecular.g++.4.gz -rw-r--r-- root/root 2950 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/quip/log.24Jul17.sw.g++.1 -rw-r--r-- root/root 2947 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/quip/log.24Jul17.sw.g++.4 -rw-r--r-- root/root 3452 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/quip/methane-box-8.data -rw-r--r-- root/root 1712 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/quip/out.molecular.gz -rw-r--r-- root/root 2383 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/quip/sw_example.xml drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smd/ -rw-r--r-- root/root 394 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smd/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smd/aluminum_strip_pull/ -rw-r--r-- root/root 1984 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smd/aluminum_strip_pull/aluminum_strip_pull.lmp.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smd/fluid_structure_interaction/ -rw-r--r-- root/root 2287 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smd/fluid_structure_interaction/fluid_structure_interaction.lmp.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smd/funnel_flow/ -rw-r--r-- root/root 386617 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smd/funnel_flow/boundary.stl.gz -rw-r--r-- root/root 1906 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smd/funnel_flow/funnel_flow.lmp.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smd/rubber_rings_3d/ -rw-r--r-- root/root 1564 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smd/rubber_rings_3d/rubber_rings_3d.lmp.gz -rw-r--r-- root/root 6535 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smd/rubber_rings_3d/washer_hex_adjusted.data.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smd/rubber_strip_pull/ -rw-r--r-- root/root 312 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smd/rubber_strip_pull/plot.gpl -rw-r--r-- root/root 1515 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smd/rubber_strip_pull/rubber_strip_pull.lmp.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smtbq/ -rw-r--r-- root/root 10243 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smtbq/data.Alpha.gz -rw-r--r-- root/root 1731 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smtbq/ffield.smtbq.Al -rw-r--r-- root/root 2899 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smtbq/ffield.smtbq.Al2O3 -rw-r--r-- root/root 2857 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smtbq/ffield.smtbq.TiO2 -rw-r--r-- root/root 1785 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smtbq/in.smtbq.Al -rw-r--r-- root/root 1174 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smtbq/in.smtbq.Al2O3 -rw-r--r-- root/root 2459 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smtbq/in.smtbq.TiO2 -rw-r--r-- root/root 4058 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smtbq/log.smtbq.Al.g++.1.gz -rw-r--r-- root/root 4192 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smtbq/log.smtbq.Al.g++.4.gz -rw-r--r-- root/root 2618 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smtbq/log.smtbq.Al2O3.g++.1.gz -rw-r--r-- root/root 2740 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smtbq/log.smtbq.Al2O3.g++.4.gz -rw-r--r-- root/root 3058 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smtbq/log.smtbq.TiO2.g++.1.gz -rw-r--r-- root/root 3214 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/smtbq/log.smtbq.TiO2.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/sph/ -rw-r--r-- root/root 76 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/sph/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/sph/cavity_flow/ -rw-r--r-- root/root 2446 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/sph/cavity_flow/cavity_flow.lmp drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/sph/heatconduction/ -rw-r--r-- root/root 600 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/sph/heatconduction/compare_analytic.gpl -rw-r--r-- root/root 1595 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/sph/heatconduction/sph_heat_conduction_2d.lmp -rw-r--r-- root/root 1488 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/sph/heatconduction/sph_heat_conduction_3d.lmp drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/sph/shock_tube/ -rw-r--r-- root/root 129 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/sph/shock_tube/compare_exact.gpl -rw-r--r-- root/root 2281 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/sph/shock_tube/exact_solution.dat.gz -rw-r--r-- root/root 1611 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/sph/shock_tube/shock2d.lmp -rw-r--r-- root/root 1714 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/sph/shock_tube/shock3d.lmp drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/sph/water_collapse/ -rw-r--r-- root/root 173234 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/sph/water_collapse/data.initial.gz -rw-r--r-- root/root 2393 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/sph/water_collapse/water_collapse.lmp drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/tally/ -rw-r--r-- root/root 321 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/tally/README -rw-r--r-- root/root 122066 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/tally/data.spce.gz -rw-r--r-- root/root 1807 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/tally/in.force -rw-r--r-- root/root 1932 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/tally/in.pe -rw-r--r-- root/root 1480 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/tally/in.stress -rw-r--r-- root/root 2395 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/tally/log.12Jun17.force.1.gz -rw-r--r-- root/root 2476 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/tally/log.12Jun17.force.4.gz -rw-r--r-- root/root 2449 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/tally/log.12Jun17.pe.1.gz -rw-r--r-- root/root 2533 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/tally/log.12Jun17.pe.4.gz -rw-r--r-- root/root 2069 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/tally/log.12Jun17.stress.1.gz -rw-r--r-- root/root 2150 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/tally/log.12Jun17.stress.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/uef/ -rw-r--r-- root/root 905 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/uef/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/uef/npt_biaxial/ -rw-r--r-- root/root 35087 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/uef/npt_biaxial/data.wca.gz -rw-r--r-- root/root 752 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/uef/npt_biaxial/in.npt_biaxial -rw-r--r-- root/root 5019 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/uef/npt_biaxial/log.22Sep17.npt_biaxial.g++.1.gz -rw-r--r-- root/root 5067 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/uef/npt_biaxial/log.22Sep17.npt_biaxial.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/uef/nvt_uniaxial/ -rw-r--r-- root/root 35087 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/uef/nvt_uniaxial/data.wca.gz -rw-r--r-- root/root 531 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/uef/nvt_uniaxial/in.nvt_uniaxial -rw-r--r-- root/root 4893 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/uef/nvt_uniaxial/log.22Sep17.npt_uniaxial.g++.1.gz -rw-r--r-- root/root 4961 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/uef/nvt_uniaxial/log.22Sep17.npt_uniaxial.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/vtk/ -rw-r--r-- root/root 613 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/vtk/in.vtk -rw-r--r-- root/root 613 2018-06-19 10:54 ./usr/share/doc/lammps/examples/USER/vtk/in.vtp drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/VISCOSITY/ -rw-r--r-- root/root 3242 2018-06-19 10:54 ./usr/share/doc/lammps/examples/VISCOSITY/README -rw-r--r-- root/root 2068 2018-06-19 10:54 ./usr/share/doc/lammps/examples/VISCOSITY/in.einstein.2d -rw-r--r-- root/root 1800 2018-06-19 10:54 ./usr/share/doc/lammps/examples/VISCOSITY/in.gk.2d -rw-r--r-- root/root 1700 2018-06-19 10:54 ./usr/share/doc/lammps/examples/VISCOSITY/in.mp.2d -rw-r--r-- root/root 1983 2018-06-19 10:54 ./usr/share/doc/lammps/examples/VISCOSITY/in.nemd.2d -rw-r--r-- root/root 1984 2018-06-19 10:54 ./usr/share/doc/lammps/examples/VISCOSITY/in.wall.2d -rw-r--r-- root/root 10560 2018-06-19 10:54 ./usr/share/doc/lammps/examples/VISCOSITY/log.13Oct16.einstein.2d.g++.1.gz -rw-r--r-- root/root 9304 2018-06-19 10:54 ./usr/share/doc/lammps/examples/VISCOSITY/log.13Oct16.gk.2d.g++.1.gz -rw-r--r-- root/root 4394 2018-06-19 10:54 ./usr/share/doc/lammps/examples/VISCOSITY/log.13Oct16.mp.2d.g++.1.gz -rw-r--r-- root/root 5752 2018-06-19 10:54 ./usr/share/doc/lammps/examples/VISCOSITY/log.13Oct16.nemd.2d.g++.1.gz -rw-r--r-- root/root 4124 2018-06-19 10:54 ./usr/share/doc/lammps/examples/VISCOSITY/log.13Oct16.wall.2d.g++.1.gz -rw-r--r-- root/root 2833 2018-06-19 10:54 ./usr/share/doc/lammps/examples/VISCOSITY/profile.13Oct16.einstein.2d.g++.1.gz -rw-r--r-- root/root 1333235 2018-06-19 10:54 ./usr/share/doc/lammps/examples/VISCOSITY/profile.13Oct16.gk.2d.g++.1.gz -rw-r--r-- root/root 11077 2018-06-19 10:54 ./usr/share/doc/lammps/examples/VISCOSITY/profile.13Oct16.mp.2d.g++.1.gz -rw-r--r-- root/root 3481 2018-06-19 10:54 ./usr/share/doc/lammps/examples/VISCOSITY/profile.13Oct16.nemd.2d.g++.1.gz -rw-r--r-- root/root 3571 2018-06-19 10:54 ./usr/share/doc/lammps/examples/VISCOSITY/profile.13Oct16.wall.2d.g++.1 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/ -rw-r--r-- root/root 2386 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/Make.list -rw-r--r-- root/root 3757 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/README -rw-r--r-- root/root 658204 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/data.phosphate.gz -rw-r--r-- root/root 1193 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/in.lc -rw-r--r-- root/root 518 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/in.lj -rw-r--r-- root/root 514 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/in.lj.5.0 -rw-r--r-- root/root 552 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/in.phosphate -rw-r--r-- root/root 697 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/in.rhodo -rw-r--r-- root/root 2434 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/log.lj.1Feb14.gpu.1 -rw-r--r-- root/root 2430 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/log.lj.1Feb14.gpu.4 -rw-r--r-- root/root 1811 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/log.lj.1Feb14.kokkos.cuda.1 -rw-r--r-- root/root 1814 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/log.lj.1Feb14.kokkos.cuda.2 -rw-r--r-- root/root 1789 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/log.lj.1Feb14.kokkos.omp.1 -rw-r--r-- root/root 1813 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/log.lj.1Feb14.kokkos.omp.4 -rw-r--r-- root/root 2457 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/log.lj.5.0.1Feb14.gpu.1 -rw-r--r-- root/root 2447 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/log.lj.5.0.1Feb14.gpu.4 -rw-r--r-- root/root 2225 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/log.phosphate.1Feb14.gpu.1 -rw-r--r-- root/root 2224 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/log.phosphate.1Feb14.gpu.4 -rw-r--r-- root/root 1754 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/log.rhodo.1Feb14.gpu.1.gz -rw-r--r-- root/root 1772 2018-06-19 10:54 ./usr/share/doc/lammps/examples/accelerate/log.rhodo.1Feb14.gpu.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/airebo/ -rw-r--r-- root/root 2886 2018-06-19 10:54 ./usr/share/doc/lammps/examples/airebo/data.airebo -rw-r--r-- root/root 365 2018-06-19 10:54 ./usr/share/doc/lammps/examples/airebo/in.airebo -rw-r--r-- root/root 373 2018-06-19 10:54 ./usr/share/doc/lammps/examples/airebo/in.airebo-m -rw-r--r-- root/root 3234 2018-06-19 10:54 ./usr/share/doc/lammps/examples/airebo/log.23Jun17.airebo-m.g++.1 -rw-r--r-- root/root 3231 2018-06-19 10:54 ./usr/share/doc/lammps/examples/airebo/log.23Jun17.airebo-m.g++.4 -rw-r--r-- root/root 3218 2018-06-19 10:54 ./usr/share/doc/lammps/examples/airebo/log.23Jun17.airebo.g++.1 -rw-r--r-- root/root 3217 2018-06-19 10:54 ./usr/share/doc/lammps/examples/airebo/log.23Jun17.airebo.g++.4 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/ -rw-r--r-- root/root 1375 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/in.balance -rw-r--r-- root/root 1690 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/in.balance.bond.fast -rw-r--r-- root/root 1569 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/in.balance.bond.slow -rw-r--r-- root/root 1244 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/in.balance.clock.dynamic -rw-r--r-- root/root 966 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/in.balance.clock.static -rw-r--r-- root/root 952 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/in.balance.group.dynamic -rw-r--r-- root/root 1088 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/in.balance.group.static -rw-r--r-- root/root 948 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/in.balance.kspace -rw-r--r-- root/root 1181 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/in.balance.neigh.dynamic -rw-r--r-- root/root 1095 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/in.balance.neigh.rcb -rw-r--r-- root/root 1099 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/in.balance.neigh.static -rw-r--r-- root/root 1541 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/in.balance.var.dynamic -rw-r--r-- root/root 4163 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/log.5Oct16.balance.bond.fast.g++.4.gz -rw-r--r-- root/root 7952 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/log.5Oct16.balance.bond.slow.g++.4.gz -rw-r--r-- root/root 3017 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/log.5Oct16.balance.clock.dynamic.g++.4.gz -rw-r--r-- root/root 2304 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/log.5Oct16.balance.clock.static.g++.4.gz -rw-r--r-- root/root 3829 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/log.5Oct16.balance.g++.4.gz -rw-r--r-- root/root 3501 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/log.5Oct16.balance.group.dynamic.g++.4 -rw-r--r-- root/root 1655 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/log.5Oct16.balance.group.static.g++.4.gz -rw-r--r-- root/root 4071 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/log.5Oct16.balance.kspace.g++.4 -rw-r--r-- root/root 3053 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/log.5Oct16.balance.neigh.dynamic.g++.4.gz -rw-r--r-- root/root 1902 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/log.5Oct16.balance.neigh.rcb.g++.4.gz -rw-r--r-- root/root 2493 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/log.5Oct16.balance.neigh.static.g++.4.gz -rw-r--r-- root/root 3237 2018-06-19 10:54 ./usr/share/doc/lammps/examples/balance/log.5Oct16.balance.var.dynamic.g++.2.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/body/ -rw-r--r-- root/root 4772 2018-06-19 10:54 ./usr/share/doc/lammps/examples/body/data.body.gz -rw-r--r-- root/root 610 2018-06-19 10:54 ./usr/share/doc/lammps/examples/body/in.body -rw-r--r-- root/root 3688 2018-06-19 10:54 ./usr/share/doc/lammps/examples/body/log.5Oct16.body.g++.1.gz -rw-r--r-- root/root 3763 2018-06-19 10:54 ./usr/share/doc/lammps/examples/body/log.5Oct16.body.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/cmap/ -rw-r--r-- root/root 6448 2018-06-19 10:54 ./usr/share/doc/lammps/examples/cmap/charmm22.cmap.gz -rw-r--r-- root/root 3960 2018-06-19 10:54 ./usr/share/doc/lammps/examples/cmap/gagg.data.gz -rw-r--r-- root/root 836 2018-06-19 10:54 ./usr/share/doc/lammps/examples/cmap/in.cmap -rw-r--r-- root/root 5670 2018-06-19 10:54 ./usr/share/doc/lammps/examples/cmap/log.11Apr17.cmap.g++.1.gz -rw-r--r-- root/root 5767 2018-06-19 10:54 ./usr/share/doc/lammps/examples/cmap/log.11Apr17.cmap.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/colloid/ -rw-r--r-- root/root 1066 2018-06-19 10:54 ./usr/share/doc/lammps/examples/colloid/in.colloid -rw-r--r-- root/root 2919 2018-06-19 10:54 ./usr/share/doc/lammps/examples/colloid/log.5Oct16.colloid.g++.1.gz -rw-r--r-- root/root 2991 2018-06-19 10:54 ./usr/share/doc/lammps/examples/colloid/log.5Oct16.colloid.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/ -rw-r--r-- root/root 826 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/README -rw-r--r-- root/root 7226 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/data.Cu2O.gz -rw-r--r-- root/root 79795 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/data.CuaS.gz -rw-r--r-- root/root 7790 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/data.c-HfO2.gz -rw-r--r-- root/root 12919 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/data.comb3-OHCCu.gz -rw-r--r-- root/root 11673 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/data.m-HfO2.gz -rw-r--r-- root/root 8594 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/data.t-HfO2.gz -rw-r--r-- root/root 1105 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/elastic.f90.gz -rw-r--r-- root/root 2641 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/ffield.comb.gz -rw-r--r-- root/root 11425 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/ffield.comb3.gz -rw-r--r-- root/root 869 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/in.comb.Cu -rw-r--r-- root/root 2615 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/in.comb.Cu2O.elastic -rw-r--r-- root/root 1340 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/in.comb.HfO2 -rw-r--r-- root/root 865 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/in.comb.Si -rw-r--r-- root/root 2268 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/in.comb.Si.elastic -rw-r--r-- root/root 739 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/in.comb3 -rw-r--r-- root/root 683183 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/lib.comb3.gz -rw-r--r-- root/root 1464 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/log.5Oct16.comb.Cu.g++.1.gz -rw-r--r-- root/root 1505 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/log.5Oct16.comb.Cu.g++.4.gz -rw-r--r-- root/root 5222 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/log.5Oct16.comb.Cu2O.elastic.g++.1.gz -rw-r--r-- root/root 5563 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/log.5Oct16.comb.Cu2O.elastic.g++.4.gz -rw-r--r-- root/root 2343 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/log.5Oct16.comb.HfO2.g++.1.gz -rw-r--r-- root/root 2481 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/log.5Oct16.comb.HfO2.g++.4.gz -rw-r--r-- root/root 4091 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/log.5Oct16.comb.Si.elastic.g++.1.gz -rw-r--r-- root/root 4313 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/log.5Oct16.comb.Si.elastic.g++.4.gz -rw-r--r-- root/root 1466 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/log.5Oct16.comb.Si.g++.1.gz -rw-r--r-- root/root 1514 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/log.5Oct16.comb.Si.g++.4.gz -rw-r--r-- root/root 3993 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/log.5Oct16.comb3.g++.1 -rw-r--r-- root/root 3994 2018-06-19 10:54 ./usr/share/doc/lammps/examples/comb/log.5Oct16.comb3.g++.4 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/controller/ -rw-r--r-- root/root 864 2018-06-19 10:54 ./usr/share/doc/lammps/examples/controller/in.controller -rw-r--r-- root/root 2848 2018-06-19 10:54 ./usr/share/doc/lammps/examples/controller/log.5Oct16.controller.g++.1.gz -rw-r--r-- root/root 2998 2018-06-19 10:54 ./usr/share/doc/lammps/examples/controller/log.5Oct16.controller.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/coreshell/ -rw-r--r-- root/root 6611 2018-06-19 10:54 ./usr/share/doc/lammps/examples/coreshell/data.coreshell.gz -rw-r--r-- root/root 2027 2018-06-19 10:54 ./usr/share/doc/lammps/examples/coreshell/in.coreshell -rw-r--r-- root/root 1842 2018-06-19 10:54 ./usr/share/doc/lammps/examples/coreshell/in.coreshell.dsf -rw-r--r-- root/root 2352 2018-06-19 10:54 ./usr/share/doc/lammps/examples/coreshell/in.coreshell.thermostats -rw-r--r-- root/root 1895 2018-06-19 10:54 ./usr/share/doc/lammps/examples/coreshell/in.coreshell.wolf -rw-r--r-- root/root 4030 2018-06-19 10:54 ./usr/share/doc/lammps/examples/coreshell/log.22Sep17.coreshell.wolf.g++.1.gz -rw-r--r-- root/root 4224 2018-06-19 10:54 ./usr/share/doc/lammps/examples/coreshell/log.22Sep17.coreshell.wolf.g++.4.gz -rw-r--r-- root/root 4247 2018-06-19 10:54 ./usr/share/doc/lammps/examples/coreshell/log.5Oct16.coreshell.g++.1.gz -rw-r--r-- root/root 4442 2018-06-19 10:54 ./usr/share/doc/lammps/examples/coreshell/log.5Oct16.coreshell.g++.4.gz -rw-r--r-- root/root 3922 2018-06-19 10:54 ./usr/share/doc/lammps/examples/coreshell/log.9Nov16.coreshell.dsf.g++.1.gz -rw-r--r-- root/root 4180 2018-06-19 10:54 ./usr/share/doc/lammps/examples/coreshell/log.9Nov16.coreshell.dsf.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/crack/ -rw-r--r-- root/root 1395 2018-06-19 10:54 ./usr/share/doc/lammps/examples/crack/in.crack -rw-r--r-- root/root 2296 2018-06-19 10:54 ./usr/share/doc/lammps/examples/crack/log.5Oct16.crack.g++.1.gz -rw-r--r-- root/root 2383 2018-06-19 10:54 ./usr/share/doc/lammps/examples/crack/log.5Oct16.crack.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/deposit/ -rw-r--r-- root/root 1149 2018-06-19 10:54 ./usr/share/doc/lammps/examples/deposit/in.deposit.atom -rw-r--r-- root/root 1307 2018-06-19 10:54 ./usr/share/doc/lammps/examples/deposit/in.deposit.molecule -rw-r--r-- root/root 1376 2018-06-19 10:54 ./usr/share/doc/lammps/examples/deposit/in.deposit.molecule.shake -rw-r--r-- root/root 4029 2018-06-19 10:54 ./usr/share/doc/lammps/examples/deposit/log.5Oct16.deposit.atom.g++.1.gz -rw-r--r-- root/root 4106 2018-06-19 10:54 ./usr/share/doc/lammps/examples/deposit/log.5Oct16.deposit.atom.g++.4.gz -rw-r--r-- root/root 4176 2018-06-19 10:54 ./usr/share/doc/lammps/examples/deposit/log.5Oct16.deposit.molecule.g++.1.gz -rw-r--r-- root/root 4248 2018-06-19 10:54 ./usr/share/doc/lammps/examples/deposit/log.5Oct16.deposit.molecule.g++.4.gz -rw-r--r-- root/root 4333 2018-06-19 10:54 ./usr/share/doc/lammps/examples/deposit/log.5Oct16.deposit.molecule.shake.g++.1.gz -rw-r--r-- root/root 4426 2018-06-19 10:54 ./usr/share/doc/lammps/examples/deposit/log.5Oct16.deposit.molecule.shake.g++.4.gz -rw-r--r-- root/root 153 2018-06-19 10:54 ./usr/share/doc/lammps/examples/deposit/molecule.dimer -rw-r--r-- root/root 229 2018-06-19 10:54 ./usr/share/doc/lammps/examples/deposit/molecule.dimer.shake drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/dipole/ -rw-r--r-- root/root 774 2018-06-19 10:54 ./usr/share/doc/lammps/examples/dipole/in.dipole -rw-r--r-- root/root 3962 2018-06-19 10:54 ./usr/share/doc/lammps/examples/dipole/log.5Oct16.dipole.g++.1 -rw-r--r-- root/root 3962 2018-06-19 10:54 ./usr/share/doc/lammps/examples/dipole/log.5Oct16.dipole.g++.4 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/dreiding/ -rw-r--r-- root/root 212 2018-06-19 10:54 ./usr/share/doc/lammps/examples/dreiding/README -rw-r--r-- root/root 10146 2018-06-19 10:54 ./usr/share/doc/lammps/examples/dreiding/ch3oh.box.dreiding.bgf.gz -rw-r--r-- root/root 2522 2018-06-19 10:54 ./usr/share/doc/lammps/examples/dreiding/ch3oh.box.dreiding.cerius2.eng.dat -rw-r--r-- root/root 13346 2018-06-19 10:54 ./usr/share/doc/lammps/examples/dreiding/data.dreiding.gz -rw-r--r-- root/root 1996 2018-06-19 10:54 ./usr/share/doc/lammps/examples/dreiding/in.dreiding -rw-r--r-- root/root 1905 2018-06-19 10:54 ./usr/share/doc/lammps/examples/dreiding/log.5Oct16.dreiding.g++.1.gz -rw-r--r-- root/root 1929 2018-06-19 10:54 ./usr/share/doc/lammps/examples/dreiding/log.5Oct16.dreiding.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/eim/ -rw-r--r-- root/root 17543 2018-06-19 10:54 ./usr/share/doc/lammps/examples/eim/data.eim.gz -rw-r--r-- root/root 2215 2018-06-19 10:54 ./usr/share/doc/lammps/examples/eim/ffield.eim.gz -rw-r--r-- root/root 787 2018-06-19 10:54 ./usr/share/doc/lammps/examples/eim/in.eim -rw-r--r-- root/root 3256 2018-06-19 10:54 ./usr/share/doc/lammps/examples/eim/log.5Oct16.eim.g++.1 -rw-r--r-- root/root 3260 2018-06-19 10:54 ./usr/share/doc/lammps/examples/eim/log.5Oct16.eim.g++.4 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ellipse/ -rw-r--r-- root/root 1587 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ellipse/in.ellipse.gayberne -rw-r--r-- root/root 1572 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ellipse/in.ellipse.resquared -rw-r--r-- root/root 2910 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ellipse/log.5Oct16.ellipse.gayberne.g++.1.gz -rw-r--r-- root/root 3039 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ellipse/log.5Oct16.ellipse.gayberne.g++.4.gz -rw-r--r-- root/root 2838 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ellipse/log.5Oct16.ellipse.resquared.g++.1.gz -rw-r--r-- root/root 2963 2018-06-19 10:54 ./usr/share/doc/lammps/examples/ellipse/log.5Oct16.ellipse.resquared.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/flow/ -rw-r--r-- root/root 1505 2018-06-19 10:54 ./usr/share/doc/lammps/examples/flow/in.flow.couette -rw-r--r-- root/root 1503 2018-06-19 10:54 ./usr/share/doc/lammps/examples/flow/in.flow.pois -rw-r--r-- root/root 1996 2018-06-19 10:54 ./usr/share/doc/lammps/examples/flow/log.5Oct16.flow.couette.g++.1.gz -rw-r--r-- root/root 2051 2018-06-19 10:54 ./usr/share/doc/lammps/examples/flow/log.5Oct16.flow.couette.g++.4.gz -rw-r--r-- root/root 2127 2018-06-19 10:54 ./usr/share/doc/lammps/examples/flow/log.5Oct16.flow.pois.g++.1.gz -rw-r--r-- root/root 2174 2018-06-19 10:54 ./usr/share/doc/lammps/examples/flow/log.5Oct16.flow.pois.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/friction/ -rw-r--r-- root/root 1939 2018-06-19 10:54 ./usr/share/doc/lammps/examples/friction/in.friction -rw-r--r-- root/root 2152 2018-06-19 10:54 ./usr/share/doc/lammps/examples/friction/log.5Oct16.friction.g++.1.gz -rw-r--r-- root/root 2230 2018-06-19 10:54 ./usr/share/doc/lammps/examples/friction/log.5Oct16.friction.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/gcmc/ -rw-r--r-- root/root 408 2018-06-19 10:54 ./usr/share/doc/lammps/examples/gcmc/CO2.txt -rw-r--r-- root/root 550 2018-06-19 10:54 ./usr/share/doc/lammps/examples/gcmc/H2O.txt -rw-r--r-- root/root 2734 2018-06-19 10:54 ./usr/share/doc/lammps/examples/gcmc/in.gcmc.co2 -rw-r--r-- root/root 2573 2018-06-19 10:54 ./usr/share/doc/lammps/examples/gcmc/in.gcmc.h2o -rw-r--r-- root/root 1675 2018-06-19 10:54 ./usr/share/doc/lammps/examples/gcmc/in.gcmc.lj -rw-r--r-- root/root 3527 2018-06-19 10:54 ./usr/share/doc/lammps/examples/gcmc/log.30Mar18.gcmc.co2.g++.1.gz -rw-r--r-- root/root 1780 2018-06-19 10:54 ./usr/share/doc/lammps/examples/gcmc/log.30Mar18.gcmc.co2.g++.4.gz -rw-r--r-- root/root 4185 2018-06-19 10:54 ./usr/share/doc/lammps/examples/gcmc/log.30Mar18.gcmc.h2o.g++.1.gz -rw-r--r-- root/root 3022 2018-06-19 10:54 ./usr/share/doc/lammps/examples/gcmc/log.30Mar18.gcmc.h2o.g++.4.gz -rw-r--r-- root/root 2409 2018-06-19 10:54 ./usr/share/doc/lammps/examples/gcmc/log.30Mar18.gcmc.lj.g++.1.gz -rw-r--r-- root/root 2461 2018-06-19 10:54 ./usr/share/doc/lammps/examples/gcmc/log.30Mar18.gcmc.lj.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/granregion/ -rw-r--r-- root/root 1789 2018-06-19 10:54 ./usr/share/doc/lammps/examples/granregion/in.granregion.box -rw-r--r-- root/root 1482 2018-06-19 10:54 ./usr/share/doc/lammps/examples/granregion/in.granregion.funnel.gz -rw-r--r-- root/root 2515 2018-06-19 10:54 ./usr/share/doc/lammps/examples/granregion/in.granregion.mixer -rw-r--r-- root/root 7380 2018-06-19 10:54 ./usr/share/doc/lammps/examples/granregion/log.6Oct16.granregion.box.g++.1.gz -rw-r--r-- root/root 7743 2018-06-19 10:54 ./usr/share/doc/lammps/examples/granregion/log.6Oct16.granregion.box.g++.4.gz -rw-r--r-- root/root 7258 2018-06-19 10:54 ./usr/share/doc/lammps/examples/granregion/log.6Oct16.granregion.funnel.g++.1.gz -rw-r--r-- root/root 7396 2018-06-19 10:54 ./usr/share/doc/lammps/examples/granregion/log.6Oct16.granregion.funnel.g++.4.gz -rw-r--r-- root/root 8989 2018-06-19 10:54 ./usr/share/doc/lammps/examples/granregion/log.6Oct16.granregion.mixer.g++.1.gz -rw-r--r-- root/root 9088 2018-06-19 10:54 ./usr/share/doc/lammps/examples/granregion/log.6Oct16.granregion.mixer.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/hugoniostat/ -rw-r--r-- root/root 1389 2018-06-19 10:54 ./usr/share/doc/lammps/examples/hugoniostat/in.hugoniostat.gz -rw-r--r-- root/root 3981 2018-06-19 10:54 ./usr/share/doc/lammps/examples/hugoniostat/log.5Oct16.hugoniostat.g++.1 -rw-r--r-- root/root 3969 2018-06-19 10:54 ./usr/share/doc/lammps/examples/hugoniostat/log.5Oct16.hugoniostat.g++.4 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/indent/ -rw-r--r-- root/root 1151 2018-06-19 10:54 ./usr/share/doc/lammps/examples/indent/in.indent -rw-r--r-- root/root 1749 2018-06-19 10:54 ./usr/share/doc/lammps/examples/indent/in.indent.min -rw-r--r-- root/root 3436 2018-06-19 10:54 ./usr/share/doc/lammps/examples/indent/log.5Oct16.indent.g++.1.gz -rw-r--r-- root/root 3572 2018-06-19 10:54 ./usr/share/doc/lammps/examples/indent/log.5Oct16.indent.g++.4.gz -rw-r--r-- root/root 5006 2018-06-19 10:54 ./usr/share/doc/lammps/examples/indent/log.5Oct16.indent.min.g++.1.gz -rw-r--r-- root/root 5216 2018-06-19 10:54 ./usr/share/doc/lammps/examples/indent/log.5Oct16.indent.min.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/kim/ -rw-r--r-- root/root 636 2018-06-19 10:54 ./usr/share/doc/lammps/examples/kim/in.kim.lj -rw-r--r-- root/root 635 2018-06-19 10:54 ./usr/share/doc/lammps/examples/kim/in.kim.lj.lmp -rw-r--r-- root/root 1146 2018-06-19 10:54 ./usr/share/doc/lammps/examples/kim/log.28Jun15.kim.lj.lmp.ubuntu.1 -rw-r--r-- root/root 1120 2018-06-19 10:54 ./usr/share/doc/lammps/examples/kim/log.28Jun15.kim.lj.lmp.ubuntu.4 -rw-r--r-- root/root 1145 2018-06-19 10:54 ./usr/share/doc/lammps/examples/kim/log.28Jun15.kim.lj.ubuntu.1 -rw-r--r-- root/root 1121 2018-06-19 10:54 ./usr/share/doc/lammps/examples/kim/log.28Jun15.kim.lj.ubuntu.4 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/latte/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/latte/TBparam/ -rw-r--r-- root/root 1598 2018-06-19 10:54 ./usr/share/doc/lammps/examples/latte/TBparam/bondints.nonortho.gz -rw-r--r-- root/root 669 2018-06-19 10:54 ./usr/share/doc/lammps/examples/latte/TBparam/electrons.dat -rw-r--r-- root/root 1109 2018-06-19 10:54 ./usr/share/doc/lammps/examples/latte/TBparam/ppots.nonortho -rw-r--r-- root/root 2694 2018-06-19 10:54 ./usr/share/doc/lammps/examples/latte/data.sucrose -rw-r--r-- root/root 1607 2018-06-19 10:54 ./usr/share/doc/lammps/examples/latte/data.water -rw-r--r-- root/root 710 2018-06-19 10:54 ./usr/share/doc/lammps/examples/latte/in.latte.sucrose -rw-r--r-- root/root 706 2018-06-19 10:54 ./usr/share/doc/lammps/examples/latte/in.latte.water -rw-r--r-- root/root 754 2018-06-19 10:54 ./usr/share/doc/lammps/examples/latte/in.latte.water.min -rw-r--r-- root/root 1110 2018-06-19 10:54 ./usr/share/doc/lammps/examples/latte/latte.in -rw-r--r-- root/root 4832 2018-06-19 10:54 ./usr/share/doc/lammps/examples/latte/log.19Sep17.latte.sucrose.g++.1.gz -rw-r--r-- root/root 5337 2018-06-19 10:54 ./usr/share/doc/lammps/examples/latte/log.19Sep17.latte.water.g++.1.gz -rw-r--r-- root/root 2594 2018-06-19 10:54 ./usr/share/doc/lammps/examples/latte/log.19Sep17.latte.water.min.g++.1.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/meam/ -rw-r--r-- root/root 103 2018-06-19 10:54 ./usr/share/doc/lammps/examples/meam/Ni.meam -rw-r--r-- root/root 261 2018-06-19 10:54 ./usr/share/doc/lammps/examples/meam/SiC.meam -rw-r--r-- root/root 2598 2018-06-19 10:54 ./usr/share/doc/lammps/examples/meam/data.meam.gz -rw-r--r-- root/root 535 2018-06-19 10:54 ./usr/share/doc/lammps/examples/meam/in.meam -rw-r--r-- root/root 1574 2018-06-19 10:54 ./usr/share/doc/lammps/examples/meam/in.meam.shear -rw-r--r-- root/root 537 2018-06-19 10:54 ./usr/share/doc/lammps/examples/meam/in.meamc -rw-r--r-- root/root 1576 2018-06-19 10:54 ./usr/share/doc/lammps/examples/meam/in.meamc.shear -rw-r--r-- root/root 2384 2018-06-19 10:54 ./usr/share/doc/lammps/examples/meam/library.meam.gz -rw-r--r-- root/root 3440 2018-06-19 10:54 ./usr/share/doc/lammps/examples/meam/log.19May17.meam.g++.1 -rw-r--r-- root/root 3437 2018-06-19 10:54 ./usr/share/doc/lammps/examples/meam/log.19May17.meam.g++.4 -rw-r--r-- root/root 2974 2018-06-19 10:54 ./usr/share/doc/lammps/examples/meam/log.19May17.meam.shear.g++.1.gz -rw-r--r-- root/root 3176 2018-06-19 10:54 ./usr/share/doc/lammps/examples/meam/log.19May17.meam.shear.g++.4.gz -rw-r--r-- root/root 3447 2018-06-19 10:54 ./usr/share/doc/lammps/examples/meam/log.19May17.meamc.g++.1 -rw-r--r-- root/root 3442 2018-06-19 10:54 ./usr/share/doc/lammps/examples/meam/log.19May17.meamc.g++.4 -rw-r--r-- root/root 3014 2018-06-19 10:54 ./usr/share/doc/lammps/examples/meam/log.19May17.meamc.shear.g++.1.gz -rw-r--r-- root/root 3145 2018-06-19 10:54 ./usr/share/doc/lammps/examples/meam/log.19May17.meamc.shear.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/melt/ -rw-r--r-- root/root 563 2018-06-19 10:54 ./usr/share/doc/lammps/examples/melt/in.melt -rw-r--r-- root/root 2564 2018-06-19 10:54 ./usr/share/doc/lammps/examples/melt/log.5Oct16.melt.g++.1 -rw-r--r-- root/root 2566 2018-06-19 10:54 ./usr/share/doc/lammps/examples/melt/log.5Oct16.melt.g++.4 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/micelle/ -rw-r--r-- root/root 10530 2018-06-19 10:54 ./usr/share/doc/lammps/examples/micelle/data.micelle.gz -rw-r--r-- root/root 409 2018-06-19 10:54 ./usr/share/doc/lammps/examples/micelle/def.micelle -rw-r--r-- root/root 1330 2018-06-19 10:54 ./usr/share/doc/lammps/examples/micelle/in.micelle -rw-r--r-- root/root 3997 2018-06-19 10:54 ./usr/share/doc/lammps/examples/micelle/log.5Oct16.micelle.g++.1.gz -rw-r--r-- root/root 4132 2018-06-19 10:54 ./usr/share/doc/lammps/examples/micelle/log.5Oct16.micelle.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/min/ -rw-r--r-- root/root 757 2018-06-19 10:54 ./usr/share/doc/lammps/examples/min/in.min -rw-r--r-- root/root 1696 2018-06-19 10:54 ./usr/share/doc/lammps/examples/min/in.min.box -rw-r--r-- root/root 8226 2018-06-19 10:54 ./usr/share/doc/lammps/examples/min/log.5Oct16.min.box.g++.1.gz -rw-r--r-- root/root 8326 2018-06-19 10:54 ./usr/share/doc/lammps/examples/min/log.5Oct16.min.box.g++.4.gz -rw-r--r-- root/root 1954 2018-06-19 10:54 ./usr/share/doc/lammps/examples/min/log.5Oct16.min.g++.1.gz -rw-r--r-- root/root 1982 2018-06-19 10:54 ./usr/share/doc/lammps/examples/min/log.5Oct16.min.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/mscg/ -rw-r--r-- root/root 506 2018-06-19 10:54 ./usr/share/doc/lammps/examples/mscg/README -rw-r--r-- root/root 286 2018-06-19 10:54 ./usr/share/doc/lammps/examples/mscg/control.in -rw-r--r-- root/root 24430 2018-06-19 10:54 ./usr/share/doc/lammps/examples/mscg/data.meoh.gz -rw-r--r-- root/root 665487 2018-06-19 10:54 ./usr/share/doc/lammps/examples/mscg/dump.meoh.gz -rw-r--r-- root/root 465 2018-06-19 10:54 ./usr/share/doc/lammps/examples/mscg/in.mscg -rw-r--r-- root/root 4020 2018-06-19 10:54 ./usr/share/doc/lammps/examples/mscg/log.31Mar17.g++.1 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/mscg/output_9Jan17/ -rw-r--r-- root/root 2429 2018-06-19 10:54 ./usr/share/doc/lammps/examples/mscg/output_9Jan17/1_1.dat -rw-r--r-- root/root 2474 2018-06-19 10:54 ./usr/share/doc/lammps/examples/mscg/output_9Jan17/1_1.table -rw-r--r-- root/root 416 2018-06-19 10:54 ./usr/share/doc/lammps/examples/mscg/output_9Jan17/b-spline.out -rw-r--r-- root/root 26 2018-06-19 10:54 ./usr/share/doc/lammps/examples/mscg/output_9Jan17/rmin.in -rw-r--r-- root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/mscg/output_9Jan17/rmin_b.in -rw-r--r-- root/root 268 2018-06-19 10:54 ./usr/share/doc/lammps/examples/mscg/output_9Jan17/sol_info.out -rw-r--r-- root/root 128 2018-06-19 10:54 ./usr/share/doc/lammps/examples/mscg/output_9Jan17/x.out drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/msst/ -rw-r--r-- root/root 1252 2018-06-19 10:54 ./usr/share/doc/lammps/examples/msst/in.msst -rw-r--r-- root/root 3016 2018-06-19 10:54 ./usr/share/doc/lammps/examples/msst/log.5Oct16.msst.g++.1.gz -rw-r--r-- root/root 3162 2018-06-19 10:54 ./usr/share/doc/lammps/examples/msst/log.5Oct16.msst.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/nb3b/ -rw-r--r-- root/root 1795 2018-06-19 10:54 ./usr/share/doc/lammps/examples/nb3b/MOH.nb3b.harmonic -rw-r--r-- root/root 22920 2018-06-19 10:54 ./usr/share/doc/lammps/examples/nb3b/data.nb3b.gz -rw-r--r-- root/root 1347 2018-06-19 10:54 ./usr/share/doc/lammps/examples/nb3b/in.nb3b -rw-r--r-- root/root 2402 2018-06-19 10:54 ./usr/share/doc/lammps/examples/nb3b/log.5Oct16.nb3b.g++.1.gz -rw-r--r-- root/root 2564 2018-06-19 10:54 ./usr/share/doc/lammps/examples/nb3b/log.5Oct16.nb3b.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/ -rw-r--r-- root/root 1242 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/README -rw-r--r-- root/root 782 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/Si.sw -rw-r--r-- root/root 18 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/final.hop1 -rw-r--r-- root/root 18 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/final.hop2 -rw-r--r-- root/root 212 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/final.sivac -rw-r--r-- root/root 1278 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/in.neb.hop1 -rw-r--r-- root/root 1121 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/in.neb.hop1.end -rw-r--r-- root/root 1329 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/in.neb.hop2 -rw-r--r-- root/root 1680 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/in.neb.sivac -rw-r--r-- root/root 17985 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/initial.hop1.end.gz -rw-r--r-- root/root 3943 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/initial.hop1.gz -rw-r--r-- root/root 3969 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/initial.hop2.gz -rw-r--r-- root/root 4782 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/initial.sivac.gz -rw-r--r-- root/root 1546 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/log.19Jun17.neb.hop1.end.g++.4 -rw-r--r-- root/root 1546 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/log.19Jun17.neb.hop1.end.g++.8 -rw-r--r-- root/root 1118 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/log.19Jun17.neb.hop1.g++.4 -rw-r--r-- root/root 1118 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/log.19Jun17.neb.hop1.g++.8 -rw-r--r-- root/root 1760 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/log.19Jun17.neb.hop2.g++.4 -rw-r--r-- root/root 1760 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/log.19Jun17.neb.hop2.g++.8 -rw-r--r-- root/root 2813 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/log.19Jun17.neb.sivac.g++.4 -rw-r--r-- root/root 3025 2018-06-19 10:54 ./usr/share/doc/lammps/examples/neb/log.19Jun17.neb.sivac.g++.8 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/nemd/ -rw-r--r-- root/root 698 2018-06-19 10:54 ./usr/share/doc/lammps/examples/nemd/in.nemd -rw-r--r-- root/root 2502 2018-06-19 10:54 ./usr/share/doc/lammps/examples/nemd/log.5Oct16.nemd.g++.1.gz -rw-r--r-- root/root 2572 2018-06-19 10:54 ./usr/share/doc/lammps/examples/nemd/log.5Oct16.nemd.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/obstacle/ -rw-r--r-- root/root 1493 2018-06-19 10:54 ./usr/share/doc/lammps/examples/obstacle/in.obstacle -rw-r--r-- root/root 2233 2018-06-19 10:54 ./usr/share/doc/lammps/examples/obstacle/log.5Oct16.obstacle.g++.1.gz -rw-r--r-- root/root 2292 2018-06-19 10:54 ./usr/share/doc/lammps/examples/obstacle/log.5Oct16.obstacle.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peptide/ -rw-r--r-- root/root 380 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peptide/README -rw-r--r-- root/root 82437 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peptide/data.peptide.gz -rw-r--r-- root/root 870 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peptide/in.peptide -rw-r--r-- root/root 2558 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peptide/log.5Oct16.peptide.g++.1.gz -rw-r--r-- root/root 2634 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peptide/log.5Oct16.peptide.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peri/ -rw-r--r-- root/root 1175 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peri/in.peri-pmb -rw-r--r-- root/root 1249 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peri/in.peri.eps -rw-r--r-- root/root 1242 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peri/in.peri.lps -rw-r--r-- root/root 1238 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peri/in.peri.pmb -rw-r--r-- root/root 1252 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peri/in.peri.ves -rw-r--r-- root/root 1886 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peri/log.6Jul17.peri.eps.g++.1.gz -rw-r--r-- root/root 1974 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peri/log.6Jul17.peri.eps.g++.4.gz -rw-r--r-- root/root 1880 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peri/log.6Jul17.peri.lps.g++.1.gz -rw-r--r-- root/root 1963 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peri/log.6Jul17.peri.lps.g++.4.gz -rw-r--r-- root/root 1889 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peri/log.6Jul17.peri.pmb.g++.1.gz -rw-r--r-- root/root 1971 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peri/log.6Jul17.peri.pmb.g++.4.gz -rw-r--r-- root/root 1887 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peri/log.6Jul17.peri.ves.g++.1.gz -rw-r--r-- root/root 1973 2018-06-19 10:54 ./usr/share/doc/lammps/examples/peri/log.6Jul17.peri.ves.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/pour/ -rw-r--r-- root/root 1335 2018-06-19 10:54 ./usr/share/doc/lammps/examples/pour/in.pour -rw-r--r-- root/root 1435 2018-06-19 10:54 ./usr/share/doc/lammps/examples/pour/in.pour.2d -rw-r--r-- root/root 2071 2018-06-19 10:54 ./usr/share/doc/lammps/examples/pour/in.pour.2d.molecule -rw-r--r-- root/root 1838 2018-06-19 10:54 ./usr/share/doc/lammps/examples/pour/log.5Oct16.pour.2d.g++.1.gz -rw-r--r-- root/root 1898 2018-06-19 10:54 ./usr/share/doc/lammps/examples/pour/log.5Oct16.pour.2d.g++.4.gz -rw-r--r-- root/root 2185 2018-06-19 10:54 ./usr/share/doc/lammps/examples/pour/log.5Oct16.pour.2d.molecule.g++.1.gz -rw-r--r-- root/root 2254 2018-06-19 10:54 ./usr/share/doc/lammps/examples/pour/log.5Oct16.pour.2d.molecule.g++.4.gz -rw-r--r-- root/root 2431 2018-06-19 10:54 ./usr/share/doc/lammps/examples/pour/log.5Oct16.pour.g++.1.gz -rw-r--r-- root/root 2559 2018-06-19 10:54 ./usr/share/doc/lammps/examples/pour/log.5Oct16.pour.g++.4.gz -rw-r--r-- root/root 193 2018-06-19 10:54 ./usr/share/doc/lammps/examples/pour/molecule.vshape drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/prd/ -rw-r--r-- root/root 172 2018-06-19 10:54 ./usr/share/doc/lammps/examples/prd/README -rw-r--r-- root/root 782 2018-06-19 10:54 ./usr/share/doc/lammps/examples/prd/Si.sw -rw-r--r-- root/root 2316 2018-06-19 10:54 ./usr/share/doc/lammps/examples/prd/in.prd -rw-r--r-- root/root 581 2018-06-19 10:54 ./usr/share/doc/lammps/examples/prd/log.5Oct16.prd.g++.4 -rw-r--r-- root/root 576 2018-06-19 10:54 ./usr/share/doc/lammps/examples/prd/log.5Oct16.prd.g++.8 -rw-r--r-- root/root 14477 2018-06-19 10:54 ./usr/share/doc/lammps/examples/prd/screen.5Oct16.prd.g++.4.0.gz -rw-r--r-- root/root 14010 2018-06-19 10:54 ./usr/share/doc/lammps/examples/prd/screen.5Oct16.prd.g++.4.1.gz -rw-r--r-- root/root 14487 2018-06-19 10:54 ./usr/share/doc/lammps/examples/prd/screen.5Oct16.prd.g++.4.2.gz -rw-r--r-- root/root 13949 2018-06-19 10:54 ./usr/share/doc/lammps/examples/prd/screen.5Oct16.prd.g++.4.3.gz -rw-r--r-- root/root 14631 2018-06-19 10:54 ./usr/share/doc/lammps/examples/prd/screen.5Oct16.prd.g++.8.0.gz -rw-r--r-- root/root 14134 2018-06-19 10:54 ./usr/share/doc/lammps/examples/prd/screen.5Oct16.prd.g++.8.1.gz -rw-r--r-- root/root 14614 2018-06-19 10:54 ./usr/share/doc/lammps/examples/prd/screen.5Oct16.prd.g++.8.2.gz -rw-r--r-- root/root 14038 2018-06-19 10:54 ./usr/share/doc/lammps/examples/prd/screen.5Oct16.prd.g++.8.3.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/ -rw-r--r-- root/root 854 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/README.fix_python_move -rw-r--r-- root/root 2159 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/README.pair_python -rw-r--r-- root/root 122066 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/data.spce.gz -rw-r--r-- root/root 951 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/funcs.py -rw-r--r-- root/root 1058 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/in.fix_python_invoke -rw-r--r-- root/root 349 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/in.fix_python_move_nve_melt -rw-r--r-- root/root 353 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/in.fix_python_move_nve_melt_opt -rw-r--r-- root/root 984 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/in.pair_python_coulomb -rw-r--r-- root/root 1052 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/in.pair_python_hybrid -rw-r--r-- root/root 795 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/in.pair_python_long -rw-r--r-- root/root 774 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/in.pair_python_melt -rw-r--r-- root/root 496 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/in.pair_python_spce -rw-r--r-- root/root 539 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/in.pair_python_table -rw-r--r-- root/root 1381 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/in.python -rw-r--r-- root/root 2039 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/log.4May17.pair_python_coulomb.1.gz -rw-r--r-- root/root 1764 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/log.4May17.pair_python_coulomb.g++.1.gz -rw-r--r-- root/root 1845 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/log.4May17.pair_python_coulomb.g++.4.gz -rw-r--r-- root/root 1991 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/log.4May17.pair_python_hybrid.g++.1.gz -rw-r--r-- root/root 2199 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/log.4May17.pair_python_hybrid.g++.4.gz -rw-r--r-- root/root 2022 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/log.4May17.pair_python_long.g++.1.gz -rw-r--r-- root/root 2104 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/log.4May17.pair_python_long.g++.4.gz -rw-r--r-- root/root 1833 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/log.4May17.pair_python_melt.g++.1.gz -rw-r--r-- root/root 2055 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/log.4May17.pair_python_melt.g++.4.gz -rw-r--r-- root/root 1801 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/log.4May17.pair_python_spce.g++.1.gz -rw-r--r-- root/root 1883 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/log.4May17.pair_python_spce.g++.4.gz -rw-r--r-- root/root 3369 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/log.4May17.pair_python_table.g++.1 -rw-r--r-- root/root 3365 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/log.4May17.pair_python_table.g++.4 -rw-r--r-- root/root 2847 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/log.5Oct16.python.g++.1.gz -rw-r--r-- root/root 3300 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/log.5Oct16.python.g++.4.gz -rw-r--r-- root/root 3986 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/py_nve.py -rw-r--r-- root/root 2249 2018-06-19 10:54 ./usr/share/doc/lammps/examples/python/py_pot.py drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/qeq/ -rw-r--r-- root/root 1814 2018-06-19 10:54 ./usr/share/doc/lammps/examples/qeq/data.CHO.gz -rw-r--r-- root/root 7767 2018-06-19 10:54 ./usr/share/doc/lammps/examples/qeq/data.aC.gz -rw-r--r-- root/root 2563 2018-06-19 10:54 ./usr/share/doc/lammps/examples/qeq/ffield.reax.cho.gz -rw-r--r-- root/root 1177 2018-06-19 10:54 ./usr/share/doc/lammps/examples/qeq/in.qeq.buck -rw-r--r-- root/root 1441 2018-06-19 10:54 ./usr/share/doc/lammps/examples/qeq/in.qeq.reaxc -rw-r--r-- root/root 1847 2018-06-19 10:54 ./usr/share/doc/lammps/examples/qeq/log.5Oct16.qeq.buck.g++.1.gz -rw-r--r-- root/root 4079 2018-06-19 10:54 ./usr/share/doc/lammps/examples/qeq/log.5Oct16.qeq.buck.g++.4 -rw-r--r-- root/root 3967 2018-06-19 10:54 ./usr/share/doc/lammps/examples/qeq/log.5Oct16.qeq.reaxc.g++.1 -rw-r--r-- root/root 3963 2018-06-19 10:54 ./usr/share/doc/lammps/examples/qeq/log.5Oct16.qeq.reaxc.g++.4 -rw-r--r-- root/root 72 2018-06-19 10:54 ./usr/share/doc/lammps/examples/qeq/param.qeq.reax -rw-r--r-- root/root 96 2018-06-19 10:54 ./usr/share/doc/lammps/examples/qeq/param.qeq1 -rw-r--r-- root/root 138 2018-06-19 10:54 ./usr/share/doc/lammps/examples/qeq/param.qeq2 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/AB/ -rw-r--r-- root/root 1168 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/AB/README -rw-r--r-- root/root 1846 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/AB/data.AB.gz -rw-r--r-- root/root 2973 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/AB/ffield.reax.AB.gz -rw-r--r-- root/root 409 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/AB/in.AB -rw-r--r-- root/root 1009 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/AB/lmp_control -rw-r--r-- root/root 2597 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/AB/log.8Mar18.AB.g++.1 -rw-r--r-- root/root 2600 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/AB/log.8Mar18.AB.g++.4 -rw-r--r-- root/root 72 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/AB/param.qeq drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/AuO/ -rw-r--r-- root/root 743 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/AuO/README -rw-r--r-- root/root 5860 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/AuO/data.AuO.gz -rw-r--r-- root/root 2092 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/AuO/ffield.reax.AuO.gz -rw-r--r-- root/root 402 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/AuO/in.AuO -rw-r--r-- root/root 1010 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/AuO/lmp_control -rw-r--r-- root/root 2618 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/AuO/log.8Mar18.AuO.g++.1 -rw-r--r-- root/root 2618 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/AuO/log.8Mar18.AuO.g++.4 -rw-r--r-- root/root 48 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/AuO/param.qeq drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/CHO/ -rw-r--r-- root/root 1017 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/CHO/README -rw-r--r-- root/root 1814 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/CHO/data.CHO.gz -rw-r--r-- root/root 2563 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/CHO/ffield.reax.cho.gz -rw-r--r-- root/root 404 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/CHO/in.CHO -rw-r--r-- root/root 1009 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/CHO/lmp_control -rw-r--r-- root/root 2596 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/CHO/log.8Mar18.CHO.g++.1 -rw-r--r-- root/root 2599 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/CHO/log.8Mar18.CHO.g++.4 -rw-r--r-- root/root 72 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/CHO/param.qeq drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/FC/ -rw-r--r-- root/root 622 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/FC/README -rw-r--r-- root/root 85881 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/FC/data.FC.gz -rw-r--r-- root/root 6602 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/FC/ffield.reax.FC.gz -rw-r--r-- root/root 806 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/FC/in.FC -rw-r--r-- root/root 2005 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/FC/log.8Mar18.FC.g++.1.gz -rw-r--r-- root/root 2099 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/FC/log.8Mar18.FC.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/FeOH3/ -rw-r--r-- root/root 1132 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/FeOH3/README -rw-r--r-- root/root 1869 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/FeOH3/data.FeOH3.gz -rw-r--r-- root/root 3429 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/FeOH3/ffield.reax.Fe_O_C_H.gz -rw-r--r-- root/root 416 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/FeOH3/in.FeOH3 -rw-r--r-- root/root 1014 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/FeOH3/lmp_control -rw-r--r-- root/root 2197 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/FeOH3/log.5Oct16.FeOH3.g++.1 -rw-r--r-- root/root 2197 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/FeOH3/log.5Oct16.FeOH3.g++.4 -rw-r--r-- root/root 72 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/FeOH3/param.qeq drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/HNS/ -rw-r--r-- root/root 2523 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/HNS/README.txt -rw-r--r-- root/root 24495 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/HNS/data.hns-equil.gz -rw-r--r-- root/root 3294 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/HNS/ffield.reax.hns.gz -rw-r--r-- root/root 870 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/HNS/in.reaxc.hns -rw-r--r-- root/root 1759 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/HNS/log.8Mar18.reaxc.hns.g++.1.gz -rw-r--r-- root/root 1828 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/HNS/log.8Mar18.reaxc.hns.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/RDX/ -rw-r--r-- root/root 1516 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/RDX/README -rw-r--r-- root/root 1877 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/RDX/data.RDX.gz -rw-r--r-- root/root 3164 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/RDX/ffield.reax.rdx.gz -rw-r--r-- root/root 420 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/RDX/in.RDX -rw-r--r-- root/root 1009 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/RDX/lmp_control -rw-r--r-- root/root 2603 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/RDX/log.8Mar18.RDX.g++.1 -rw-r--r-- root/root 2614 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/RDX/log.8Mar18.RDX.g++.4 -rw-r--r-- root/root 96 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/RDX/param.qeq -rw-r--r-- root/root 1655 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/README drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/VOH/ -rw-r--r-- root/root 931 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/VOH/README -rw-r--r-- root/root 1781 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/VOH/data.VOH.gz -rw-r--r-- root/root 3418 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/VOH/ffield.reax.V_O_C_H.gz -rw-r--r-- root/root 410 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/VOH/in.VOH -rw-r--r-- root/root 1010 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/VOH/lmp_control -rw-r--r-- root/root 2603 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/VOH/log.8Mar18.VOH.g++.1 -rw-r--r-- root/root 2606 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/VOH/log.8Mar18.VOH.g++.4 -rw-r--r-- root/root 96 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/VOH/param.qeq drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ZnOH2/ -rw-r--r-- root/root 1027 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ZnOH2/README -rw-r--r-- root/root 1870 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ZnOH2/data.ZnOH2.gz -rw-r--r-- root/root 2073 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ZnOH2/ffield.reax.ZnOH.gz -rw-r--r-- root/root 411 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ZnOH2/in.ZnOH2 -rw-r--r-- root/root 1013 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ZnOH2/lmp_control -rw-r--r-- root/root 2603 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ZnOH2/log.8Mar18.ZnOH2.g++.1 -rw-r--r-- root/root 2606 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ZnOH2/log.8Mar18.ZnOH2.g++.4 -rw-r--r-- root/root 72 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ZnOH2/param.qeq drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ci-reaxFF/ -rw-r--r-- root/root 22499 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ci-reaxFF/CH4.dat.gz -rw-r--r-- root/root 620776 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ci-reaxFF/ci-reaxFF_ZBL.dat.gz -rw-r--r-- root/root 26 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ci-reaxFF/control -rw-r--r-- root/root 1714 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ci-reaxFF/ffield.ci-reax.CH.gz -rw-r--r-- root/root 609 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ci-reaxFF/in.ci-reax.CH -rw-r--r-- root/root 3397 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ci-reaxFF/log.8Mar18.ci-reax.CH.g++.1 -rw-r--r-- root/root 3398 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ci-reaxFF/log.8Mar18.ci-reax.CH.g++.4 -rw-r--r-- root/root 1009 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/control.reax_c.rdx -rw-r--r-- root/root 1011 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/control.reax_c.tatb -rw-r--r-- root/root 967 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/data.rdx -rw-r--r-- root/root 4941 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/data.tatb.gz -rw-r--r-- root/root 3164 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/ffield.reax.gz -rw-r--r-- root/root 1196 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/in.reax.rdx -rw-r--r-- root/root 1220 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/in.reax.tatb -rw-r--r-- root/root 1225 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/in.reaxc.rdx -rw-r--r-- root/root 1336 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/in.reaxc.tatb -rw-r--r-- root/root 2499 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/log.8March18.reax.rdx.g++.1.gz -rw-r--r-- root/root 2558 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/log.8March18.reax.rdx.g++.4.gz -rw-r--r-- root/root 2026 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/log.8March18.reax.tatb.g++.1.gz -rw-r--r-- root/root 2076 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/log.8March18.reax.tatb.g++.4.gz -rw-r--r-- root/root 2555 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/log.8March18.reaxc.rdx.g++.1.gz -rw-r--r-- root/root 2615 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/log.8March18.reaxc.rdx.g++.4.gz -rw-r--r-- root/root 2130 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/log.8March18.reaxc.tatb.g++.1.gz -rw-r--r-- root/root 2176 2018-06-19 10:54 ./usr/share/doc/lammps/examples/reax/log.8March18.reaxc.tatb.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/ -rw-r--r-- root/root 400 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/bodies.txt -rw-r--r-- root/root 1171 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/data.rigid -rw-r--r-- root/root 1577 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/data.rigid-property -rw-r--r-- root/root 37945 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/data.rigid.tnr.gz -rw-r--r-- root/root 1905 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/in.rigid -rw-r--r-- root/root 1898 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/in.rigid.atomfile -rw-r--r-- root/root 2045 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/in.rigid.atomvar -rw-r--r-- root/root 1936 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/in.rigid.early -rw-r--r-- root/root 1909 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/in.rigid.nve -rw-r--r-- root/root 1940 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/in.rigid.nve.early -rw-r--r-- root/root 1911 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/in.rigid.poems -rw-r--r-- root/root 1912 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/in.rigid.poems2 -rw-r--r-- root/root 1986 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/in.rigid.property -rw-r--r-- root/root 1572 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/in.rigid.tnr -rw-r--r-- root/root 4247 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.atomfile.g++.1.gz -rw-r--r-- root/root 4311 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.atomfile.g++.4.gz -rw-r--r-- root/root 4297 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.atomvar.g++.1.gz -rw-r--r-- root/root 4371 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.atomvar.g++.4.gz -rw-r--r-- root/root 4229 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.early.g++.1.gz -rw-r--r-- root/root 4301 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.early.g++.4.gz -rw-r--r-- root/root 4216 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.g++.1.gz -rw-r--r-- root/root 4284 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.g++.4.gz -rw-r--r-- root/root 4726 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.nve.early.g++.1.gz -rw-r--r-- root/root 4812 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.nve.early.g++.4.gz -rw-r--r-- root/root 4706 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.nve.g++.1.gz -rw-r--r-- root/root 4795 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.nve.g++.4.gz -rw-r--r-- root/root 6561 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.poems.g++.1.gz -rw-r--r-- root/root 6693 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.poems.g++.4.gz -rw-r--r-- root/root 6609 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.poems2.g++.1.gz -rw-r--r-- root/root 6661 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.poems2.g++.4.gz -rw-r--r-- root/root 4287 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.property.g++.1.gz -rw-r--r-- root/root 4353 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.property.g++.4.gz -rw-r--r-- root/root 8658 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.tnr.g++.1.gz -rw-r--r-- root/root 9176 2018-06-19 10:54 ./usr/share/doc/lammps/examples/rigid/log.20Apr18.rigid.tnr.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/shear/ -rw-r--r-- root/root 15922 2018-06-19 10:54 ./usr/share/doc/lammps/examples/shear/Ni_u3.eam.gz -rw-r--r-- root/root 1541 2018-06-19 10:54 ./usr/share/doc/lammps/examples/shear/in.shear -rw-r--r-- root/root 1551 2018-06-19 10:54 ./usr/share/doc/lammps/examples/shear/in.shear.void -rw-r--r-- root/root 2810 2018-06-19 10:54 ./usr/share/doc/lammps/examples/shear/log.5Oct16.shear.g++.1.gz -rw-r--r-- root/root 2949 2018-06-19 10:54 ./usr/share/doc/lammps/examples/shear/log.5Oct16.shear.g++.4.gz -rw-r--r-- root/root 2852 2018-06-19 10:54 ./usr/share/doc/lammps/examples/shear/log.5Oct16.shear.void.g++.1.gz -rw-r--r-- root/root 3010 2018-06-19 10:54 ./usr/share/doc/lammps/examples/shear/log.5Oct16.shear.void.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/ -rw-r--r-- root/root 112486 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/He_He_JW2013.table.gz -rw-r--r-- root/root 414 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/Mo_Chen_PRM2017.snap -rw-r--r-- root/root 802 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/Mo_Chen_PRM2017.snapcoeff -rw-r--r-- root/root 318 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/Mo_Chen_PRM2017.snapparam -rw-r--r-- root/root 503 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/Ta06A.snap -rw-r--r-- root/root 476 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/Ta06A.snapcoeff -rw-r--r-- root/root 307 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/Ta06A.snapparam -rw-r--r-- root/root 602 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/W_2940_2017_2.snap -rw-r--r-- root/root 1205 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/W_2940_2017_2.snapcoeff -rw-r--r-- root/root 322 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/W_2940_2017_2.snapparam -rw-r--r-- root/root 938 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/W_2940_2017_2_He_JW2013.snap -rw-r--r-- root/root 7979 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/W_He_JW2013.table.gz -rw-r--r-- root/root 699 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/in.snap.Mo_Chen -rw-r--r-- root/root 689 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/in.snap.Ta06A -rw-r--r-- root/root 698 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/in.snap.W.2940 -rw-r--r-- root/root 829 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/in.snap.hybrid.WSNAP.HePair -rw-r--r-- root/root 1894 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/log.20Apr18.snap.Mo_Chen.g++.1.gz -rw-r--r-- root/root 1947 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/log.20Apr18.snap.Mo_Chen.g++.4.gz -rw-r--r-- root/root 1994 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/log.20Apr18.snap.Ta06A.g++.1.gz -rw-r--r-- root/root 2035 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/log.20Apr18.snap.Ta06A.g++.4.gz -rw-r--r-- root/root 2072 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/log.20Apr18.snap.W.2940.g++.1.gz -rw-r--r-- root/root 2125 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/log.20Apr18.snap.W.2940.g++.4.gz -rw-r--r-- root/root 2498 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/log.20Apr18.snap.hybrid.WSNAP.HePair.g++.1.gz -rw-r--r-- root/root 2575 2018-06-19 10:54 ./usr/share/doc/lammps/examples/snap/log.20Apr18.snap.hybrid.WSNAP.HePair.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/srd/ -rw-r--r-- root/root 2104 2018-06-19 10:54 ./usr/share/doc/lammps/examples/srd/in.srd.mixture -rw-r--r-- root/root 1010 2018-06-19 10:54 ./usr/share/doc/lammps/examples/srd/in.srd.pure -rw-r--r-- root/root 4984 2018-06-19 10:54 ./usr/share/doc/lammps/examples/srd/log.5Oct16.srd.mixture.g++.1.gz -rw-r--r-- root/root 5132 2018-06-19 10:54 ./usr/share/doc/lammps/examples/srd/log.5Oct16.srd.mixture.g++.4.gz -rw-r--r-- root/root 2586 2018-06-19 10:54 ./usr/share/doc/lammps/examples/srd/log.5Oct16.srd.pure.g++.1.gz -rw-r--r-- root/root 2642 2018-06-19 10:54 ./usr/share/doc/lammps/examples/srd/log.5Oct16.srd.pure.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/streitz/ -rw-r--r-- root/root 70622 2018-06-19 10:54 ./usr/share/doc/lammps/examples/streitz/AlO.eam.alloy.gz -rw-r--r-- root/root 455 2018-06-19 10:54 ./usr/share/doc/lammps/examples/streitz/AlO.streitz -rw-r--r-- root/root 12396 2018-06-19 10:54 ./usr/share/doc/lammps/examples/streitz/data.streitz.gz -rw-r--r-- root/root 1469 2018-06-19 10:54 ./usr/share/doc/lammps/examples/streitz/in.streitz.ewald -rw-r--r-- root/root 1470 2018-06-19 10:54 ./usr/share/doc/lammps/examples/streitz/in.streitz.wolf -rw-r--r-- root/root 2427 2018-06-19 10:54 ./usr/share/doc/lammps/examples/streitz/log.5Oct16.streitz.ewald.g++.1.gz -rw-r--r-- root/root 2437 2018-06-19 10:54 ./usr/share/doc/lammps/examples/streitz/log.5Oct16.streitz.ewald.g++.4.gz -rw-r--r-- root/root 2177 2018-06-19 10:54 ./usr/share/doc/lammps/examples/streitz/log.5Oct16.streitz.wolf.g++.1.gz -rw-r--r-- root/root 2177 2018-06-19 10:54 ./usr/share/doc/lammps/examples/streitz/log.5Oct16.streitz.wolf.g++.4.gz drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/tad/ -rw-r--r-- root/root 125 2018-06-19 10:54 ./usr/share/doc/lammps/examples/tad/README -rw-r--r-- root/root 782 2018-06-19 10:54 ./usr/share/doc/lammps/examples/tad/Si.sw -rw-r--r-- root/root 2711 2018-06-19 10:54 ./usr/share/doc/lammps/examples/tad/in.tad -rw-r--r-- root/root 1846 2018-06-19 10:54 ./usr/share/doc/lammps/examples/tad/log.5Oct16.tad.g++.3 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/threebody/ -rw-r--r-- root/root 1278 2018-06-19 10:54 ./usr/share/doc/lammps/examples/threebody/BNC.tersoff.gz -rw-r--r-- root/root 3399 2018-06-19 10:54 ./usr/share/doc/lammps/examples/threebody/CdTeZnSeHgS0.sw.gz -rw-r--r-- root/root 1478 2018-06-19 10:54 ./usr/share/doc/lammps/examples/threebody/InP.vashishta -rw-r--r-- root/root 782 2018-06-19 10:54 ./usr/share/doc/lammps/examples/threebody/Si.sw -rw-r--r-- root/root 3368 2018-06-19 10:54 ./usr/share/doc/lammps/examples/threebody/in.threebody drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/ -rw-r--r-- root/root 1478 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/InP.vashishta -rw-r--r-- root/root 1617 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/SiO.1990.vashishta -rw-r--r-- root/root 684 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/data.quartz -rw-r--r-- root/root 1405 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/in.vashishta.inp -rw-r--r-- root/root 469 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/in.vashishta.sio2 -rw-r--r-- root/root 1423 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/in.vashishta.table.inp -rw-r--r-- root/root 519 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/in.vashishta.table.sio2 -rw-r--r-- root/root 10453 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/log.5Oct16.indiumphosphide.g++.1.gz -rw-r--r-- root/root 4070 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/log.5Oct16.indiumphosphide.g++.4 -rw-r--r-- root/root 3076 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/log.5Oct16.sio2.g++.1 -rw-r--r-- root/root 3078 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/log.5Oct16.sio2.g++.4 -rw-r--r-- root/root 10478 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/log.5Oct16.vashishta.inp.g++.1.gz -rw-r--r-- root/root 10705 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/log.5Oct16.vashishta.inp.g++.4.gz -rw-r--r-- root/root 3076 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/log.5Oct16.vashishta.sio2.g++.1 -rw-r--r-- root/root 3078 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/log.5Oct16.vashishta.sio2.g++.4 -rw-r--r-- root/root 10454 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/log.5Oct16.vashishta.table.inp.g++.1.gz -rw-r--r-- root/root 10661 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/log.5Oct16.vashishta.table.inp.g++.4.gz -rw-r--r-- root/root 3168 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/log.5Oct16.vashishta.table.sio2.g++.1 -rw-r--r-- root/root 3166 2018-06-19 10:54 ./usr/share/doc/lammps/examples/vashishta/log.5Oct16.vashishta.table.sio2.g++.4 drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/examples/voronoi/ -rw-r--r-- root/root 474 2018-06-19 10:54 ./usr/share/doc/lammps/examples/voronoi/README -rw-r--r-- root/root 1107 2018-06-19 10:54 ./usr/share/doc/lammps/examples/voronoi/in.voronoi.2d -rw-r--r-- root/root 1784 2018-06-19 10:54 ./usr/share/doc/lammps/examples/voronoi/in.voronoi.data -rw-r--r-- root/root 1698 2018-06-19 10:54 ./usr/share/doc/lammps/examples/voronoi/in.voronoi.gz -rw-r--r-- root/root 4064 2018-06-19 10:54 ./usr/share/doc/lammps/examples/voronoi/log.5Oct16.voronoi.2d.g++.1 -rw-r--r-- root/root 4061 2018-06-19 10:54 ./usr/share/doc/lammps/examples/voronoi/log.5Oct16.voronoi.2d.g++.4 -rw-r--r-- root/root 1396 2018-06-19 10:54 ./usr/share/doc/lammps/examples/voronoi/log.5Oct16.voronoi.data.g++.1.gz -rw-r--r-- root/root 1406 2018-06-19 10:54 ./usr/share/doc/lammps/examples/voronoi/log.5Oct16.voronoi.data.g++.4.gz -rw-r--r-- root/root 3315 2018-06-19 10:54 ./usr/share/doc/lammps/examples/voronoi/log.5Oct16.voronoi.g++.1.gz -rw-r--r-- root/root 3443 2018-06-19 10:54 ./usr/share/doc/lammps/examples/voronoi/log.5Oct16.voronoi.g++.4.gz -rw-r--r-- root/root 19373 2018-06-19 10:54 ./usr/share/doc/lammps/fix.html -rw-r--r-- root/root 14645 2018-06-19 10:54 ./usr/share/doc/lammps/fix_adapt.html -rw-r--r-- root/root 13152 2018-06-19 10:54 ./usr/share/doc/lammps/fix_adapt_fep.html -rw-r--r-- root/root 8481 2018-06-19 10:54 ./usr/share/doc/lammps/fix_addforce.html -rw-r--r-- root/root 3902 2018-06-19 10:54 ./usr/share/doc/lammps/fix_addtorque.html -rw-r--r-- root/root 5081 2018-06-19 10:54 ./usr/share/doc/lammps/fix_append_atoms.html -rw-r--r-- root/root 14222 2018-06-19 10:54 ./usr/share/doc/lammps/fix_atc.html -rw-r--r-- root/root 9047 2018-06-19 10:54 ./usr/share/doc/lammps/fix_atom_swap.html -rw-r--r-- root/root 8895 2018-06-19 10:54 ./usr/share/doc/lammps/fix_ave_atom.html -rw-r--r-- root/root 27475 2018-06-19 10:54 ./usr/share/doc/lammps/fix_ave_chunk.html -rw-r--r-- root/root 18463 2018-06-19 10:54 ./usr/share/doc/lammps/fix_ave_correlate.html -rw-r--r-- root/root 6831 2018-06-19 10:54 ./usr/share/doc/lammps/fix_ave_correlate_long.html -rw-r--r-- root/root 19115 2018-06-19 10:54 ./usr/share/doc/lammps/fix_ave_histo.html -rw-r--r-- root/root 18343 2018-06-19 10:54 ./usr/share/doc/lammps/fix_ave_time.html -rw-r--r-- root/root 5167 2018-06-19 10:54 ./usr/share/doc/lammps/fix_aveforce.html -rw-r--r-- root/root 18212 2018-06-19 10:54 ./usr/share/doc/lammps/fix_balance.html -rw-r--r-- root/root 4610 2018-06-19 10:54 ./usr/share/doc/lammps/fix_bocs.html -rw-r--r-- root/root 6682 2018-06-19 10:54 ./usr/share/doc/lammps/fix_bond_break.html -rw-r--r-- root/root 12627 2018-06-19 10:54 ./usr/share/doc/lammps/fix_bond_create.html -rw-r--r-- root/root 17158 2018-06-19 10:54 ./usr/share/doc/lammps/fix_bond_react.html -rw-r--r-- root/root 9410 2018-06-19 10:54 ./usr/share/doc/lammps/fix_bond_swap.html -rw-r--r-- root/root 18691 2018-06-19 10:54 ./usr/share/doc/lammps/fix_box_relax.html -rw-r--r-- root/root 6253 2018-06-19 10:54 ./usr/share/doc/lammps/fix_cmap.html -rw-r--r-- root/root 5845 2018-06-19 10:54 ./usr/share/doc/lammps/fix_colvars.html -rw-r--r-- root/root 10614 2018-06-19 10:54 ./usr/share/doc/lammps/fix_controller.html -rw-r--r-- root/root 32386 2018-06-19 10:54 ./usr/share/doc/lammps/fix_deform.html -rw-r--r-- root/root 16042 2018-06-19 10:54 ./usr/share/doc/lammps/fix_deposit.html -rw-r--r-- root/root 4432 2018-06-19 10:54 ./usr/share/doc/lammps/fix_dpd_energy.html -rw-r--r-- root/root 4491 2018-06-19 10:54 ./usr/share/doc/lammps/fix_dpd_source.html -rw-r--r-- root/root 2449 2018-06-19 10:54 ./usr/share/doc/lammps/fix_drag.html -rw-r--r-- root/root 1909 2018-06-19 10:54 ./usr/share/doc/lammps/fix_drude.html -rw-r--r-- root/root 6818 2018-06-19 10:54 ./usr/share/doc/lammps/fix_drude_transform.html -rw-r--r-- root/root 3753 2018-06-19 10:54 ./usr/share/doc/lammps/fix_dt_reset.html -rw-r--r-- root/root 7870 2018-06-19 10:54 ./usr/share/doc/lammps/fix_efield.html -rw-r--r-- root/root 8116 2018-06-19 10:54 ./usr/share/doc/lammps/fix_ehex.html -rw-r--r-- root/root 2626 2018-06-19 10:54 ./usr/share/doc/lammps/fix_enforce2d.html -rw-r--r-- root/root 1961 2018-06-19 10:54 ./usr/share/doc/lammps/fix_eos_cv.html -rw-r--r-- root/root 4808 2018-06-19 10:54 ./usr/share/doc/lammps/fix_eos_table.html -rw-r--r-- root/root 9095 2018-06-19 10:54 ./usr/share/doc/lammps/fix_eos_table_rx.html -rw-r--r-- root/root 4148 2018-06-19 10:54 ./usr/share/doc/lammps/fix_evaporate.html -rw-r--r-- root/root 6522 2018-06-19 10:54 ./usr/share/doc/lammps/fix_external.html -rw-r--r-- root/root 3438 2018-06-19 10:54 ./usr/share/doc/lammps/fix_filter_corotate.html -rw-r--r-- root/root 7685 2018-06-19 10:54 ./usr/share/doc/lammps/fix_flow_gauss.html -rw-r--r-- root/root 3581 2018-06-19 10:54 ./usr/share/doc/lammps/fix_freeze.html -rw-r--r-- root/root 23240 2018-06-19 10:54 ./usr/share/doc/lammps/fix_gcmc.html -rw-r--r-- root/root 7412 2018-06-19 10:54 ./usr/share/doc/lammps/fix_gld.html -rw-r--r-- root/root 7572 2018-06-19 10:54 ./usr/share/doc/lammps/fix_gle.html -rw-r--r-- root/root 6744 2018-06-19 10:54 ./usr/share/doc/lammps/fix_gravity.html -rw-r--r-- root/root 4933 2018-06-19 10:54 ./usr/share/doc/lammps/fix_grem.html -rw-r--r-- root/root 6987 2018-06-19 10:54 ./usr/share/doc/lammps/fix_halt.html -rw-r--r-- root/root 6203 2018-06-19 10:54 ./usr/share/doc/lammps/fix_heat.html -rw-r--r-- root/root 7841 2018-06-19 10:54 ./usr/share/doc/lammps/fix_imd.html -rw-r--r-- root/root 10094 2018-06-19 10:54 ./usr/share/doc/lammps/fix_indent.html -rw-r--r-- root/root 4366 2018-06-19 10:54 ./usr/share/doc/lammps/fix_ipi.html -rw-r--r-- root/root 17720 2018-06-19 10:54 ./usr/share/doc/lammps/fix_langevin.html -rw-r--r-- root/root 12916 2018-06-19 10:54 ./usr/share/doc/lammps/fix_langevin_drude.html -rw-r--r-- root/root 4868 2018-06-19 10:54 ./usr/share/doc/lammps/fix_langevin_eff.html -rw-r--r-- root/root 9347 2018-06-19 10:54 ./usr/share/doc/lammps/fix_latte.html -rw-r--r-- root/root 19179 2018-06-19 10:54 ./usr/share/doc/lammps/fix_lb_fluid.html -rw-r--r-- root/root 2875 2018-06-19 10:54 ./usr/share/doc/lammps/fix_lb_momentum.html -rw-r--r-- root/root 2478 2018-06-19 10:54 ./usr/share/doc/lammps/fix_lb_pc.html -rw-r--r-- root/root 7082 2018-06-19 10:54 ./usr/share/doc/lammps/fix_lb_rigid_pc_sphere.html -rw-r--r-- root/root 3881 2018-06-19 10:54 ./usr/share/doc/lammps/fix_lb_viscous.html -rw-r--r-- root/root 1819 2018-06-19 10:54 ./usr/share/doc/lammps/fix_lineforce.html -rw-r--r-- root/root 2423 2018-06-19 10:54 ./usr/share/doc/lammps/fix_manifoldforce.html -rw-r--r-- root/root 1808 2018-06-19 10:54 ./usr/share/doc/lammps/fix_meso.html -rw-r--r-- root/root 1871 2018-06-19 10:54 ./usr/share/doc/lammps/fix_meso_stationary.html -rw-r--r-- root/root 8199 2018-06-19 10:54 ./usr/share/doc/lammps/fix_modify.html -rw-r--r-- root/root 4259 2018-06-19 10:54 ./usr/share/doc/lammps/fix_momentum.html -rw-r--r-- root/root 11178 2018-06-19 10:54 ./usr/share/doc/lammps/fix_move.html -rw-r--r-- root/root 5394 2018-06-19 10:54 ./usr/share/doc/lammps/fix_mscg.html -rw-r--r-- root/root 9409 2018-06-19 10:54 ./usr/share/doc/lammps/fix_msst.html -rw-r--r-- root/root 3686 2018-06-19 10:54 ./usr/share/doc/lammps/fix_mvv_dpd.html -rw-r--r-- root/root 11083 2018-06-19 10:54 ./usr/share/doc/lammps/fix_neb.html -rw-r--r-- root/root 34498 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nh.html -rw-r--r-- root/root 7415 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nh_eff.html -rw-r--r-- root/root 11008 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nh_uef.html -rw-r--r-- root/root 7284 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nph_asphere.html -rw-r--r-- root/root 6999 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nph_body.html -rw-r--r-- root/root 7639 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nph_sphere.html -rw-r--r-- root/root 11859 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nphug.html -rw-r--r-- root/root 8827 2018-06-19 10:54 ./usr/share/doc/lammps/fix_npt_asphere.html -rw-r--r-- root/root 8542 2018-06-19 10:54 ./usr/share/doc/lammps/fix_npt_body.html -rw-r--r-- root/root 9300 2018-06-19 10:54 ./usr/share/doc/lammps/fix_npt_sphere.html -rw-r--r-- root/root 2803 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nve.html -rw-r--r-- root/root 3527 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nve_asphere.html -rw-r--r-- root/root 2484 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nve_asphere_noforce.html -rw-r--r-- root/root 2422 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nve_body.html -rw-r--r-- root/root 2353 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nve_dot.html -rw-r--r-- root/root 6792 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nve_dotc_langevin.html -rw-r--r-- root/root 2046 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nve_eff.html -rw-r--r-- root/root 3959 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nve_limit.html -rw-r--r-- root/root 2218 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nve_line.html -rw-r--r-- root/root 4082 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nve_manifold_rattle.html -rw-r--r-- root/root 2075 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nve_noforce.html -rw-r--r-- root/root 5295 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nve_sphere.html -rw-r--r-- root/root 2205 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nve_tri.html -rw-r--r-- root/root 2561 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nvk.html -rw-r--r-- root/root 7295 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nvt_asphere.html -rw-r--r-- root/root 7016 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nvt_body.html -rw-r--r-- root/root 3181 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nvt_manifold_rattle.html -rw-r--r-- root/root 8751 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nvt_sllod.html -rw-r--r-- root/root 4067 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nvt_sllod_eff.html -rw-r--r-- root/root 7768 2018-06-19 10:54 ./usr/share/doc/lammps/fix_nvt_sphere.html -rw-r--r-- root/root 2056 2018-06-19 10:54 ./usr/share/doc/lammps/fix_oneway.html -rw-r--r-- root/root 9845 2018-06-19 10:54 ./usr/share/doc/lammps/fix_orient.html -rw-r--r-- root/root 9725 2018-06-19 10:54 ./usr/share/doc/lammps/fix_phonon.html -rw-r--r-- root/root 8256 2018-06-19 10:54 ./usr/share/doc/lammps/fix_pimd.html -rw-r--r-- root/root 1806 2018-06-19 10:54 ./usr/share/doc/lammps/fix_planeforce.html -rw-r--r-- root/root 6378 2018-06-19 10:54 ./usr/share/doc/lammps/fix_poems.html -rw-r--r-- root/root 14386 2018-06-19 10:54 ./usr/share/doc/lammps/fix_pour.html -rw-r--r-- root/root 11127 2018-06-19 10:54 ./usr/share/doc/lammps/fix_press_berendsen.html -rw-r--r-- root/root 3860 2018-06-19 10:54 ./usr/share/doc/lammps/fix_print.html -rw-r--r-- root/root 12262 2018-06-19 10:54 ./usr/share/doc/lammps/fix_property_atom.html -rw-r--r-- root/root 2813 2018-06-19 10:54 ./usr/share/doc/lammps/fix_python_invoke.html -rw-r--r-- root/root 3302 2018-06-19 10:54 ./usr/share/doc/lammps/fix_python_move.html -rw-r--r-- root/root 11310 2018-06-19 10:54 ./usr/share/doc/lammps/fix_qbmsst.html -rw-r--r-- root/root 11420 2018-06-19 10:54 ./usr/share/doc/lammps/fix_qeq.html -rw-r--r-- root/root 5535 2018-06-19 10:54 ./usr/share/doc/lammps/fix_qeq_comb.html -rw-r--r-- root/root 5722 2018-06-19 10:54 ./usr/share/doc/lammps/fix_qeq_reax.html -rw-r--r-- root/root 2668 2018-06-19 10:54 ./usr/share/doc/lammps/fix_qmmm.html -rw-r--r-- root/root 8526 2018-06-19 10:54 ./usr/share/doc/lammps/fix_qtb.html -rw-r--r-- root/root 4756 2018-06-19 10:54 ./usr/share/doc/lammps/fix_reax_bonds.html -rw-r--r-- root/root 8662 2018-06-19 10:54 ./usr/share/doc/lammps/fix_reaxc_species.html -rw-r--r-- root/root 6047 2018-06-19 10:54 ./usr/share/doc/lammps/fix_recenter.html -rw-r--r-- root/root 8911 2018-06-19 10:54 ./usr/share/doc/lammps/fix_restrain.html -rw-r--r-- root/root 1746 2018-06-19 10:54 ./usr/share/doc/lammps/fix_rhok.html -rw-r--r-- root/root 46741 2018-06-19 10:54 ./usr/share/doc/lammps/fix_rigid.html -rw-r--r-- root/root 11609 2018-06-19 10:54 ./usr/share/doc/lammps/fix_rx.html -rw-r--r-- root/root 8162 2018-06-19 10:54 ./usr/share/doc/lammps/fix_saed_vtk.html -rw-r--r-- root/root 5528 2018-06-19 10:54 ./usr/share/doc/lammps/fix_setforce.html -rw-r--r-- root/root 11143 2018-06-19 10:54 ./usr/share/doc/lammps/fix_shake.html -rw-r--r-- root/root 5218 2018-06-19 10:54 ./usr/share/doc/lammps/fix_shardlow.html -rw-r--r-- root/root 7619 2018-06-19 10:54 ./usr/share/doc/lammps/fix_smd.html -rw-r--r-- root/root 1992 2018-06-19 10:54 ./usr/share/doc/lammps/fix_smd_adjust_dt.html -rw-r--r-- root/root 1776 2018-06-19 10:54 ./usr/share/doc/lammps/fix_smd_integrate_tlsph.html -rw-r--r-- root/root 2345 2018-06-19 10:54 ./usr/share/doc/lammps/fix_smd_integrate_ulsph.html -rw-r--r-- root/root 3210 2018-06-19 10:54 ./usr/share/doc/lammps/fix_smd_move_triangulated_surface.html -rw-r--r-- root/root 3396 2018-06-19 10:54 ./usr/share/doc/lammps/fix_smd_setvel.html -rw-r--r-- root/root 2799 2018-06-19 10:54 ./usr/share/doc/lammps/fix_smd_wall_surface.html -rw-r--r-- root/root 6977 2018-06-19 10:54 ./usr/share/doc/lammps/fix_spring.html -rw-r--r-- root/root 3812 2018-06-19 10:54 ./usr/share/doc/lammps/fix_spring_chunk.html -rw-r--r-- root/root 2964 2018-06-19 10:54 ./usr/share/doc/lammps/fix_spring_rg.html -rw-r--r-- root/root 3600 2018-06-19 10:54 ./usr/share/doc/lammps/fix_spring_self.html -rw-r--r-- root/root 21435 2018-06-19 10:54 ./usr/share/doc/lammps/fix_srd.html -rw-r--r-- root/root 3149 2018-06-19 10:54 ./usr/share/doc/lammps/fix_store_force.html -rw-r--r-- root/root 5583 2018-06-19 10:54 ./usr/share/doc/lammps/fix_store_state.html -rw-r--r-- root/root 436 2018-06-19 10:54 ./usr/share/doc/lammps/fix_surface_global.html -rw-r--r-- root/root 7730 2018-06-19 10:54 ./usr/share/doc/lammps/fix_temp_berendsen.html -rw-r--r-- root/root 8357 2018-06-19 10:54 ./usr/share/doc/lammps/fix_temp_csvr.html -rw-r--r-- root/root 7267 2018-06-19 10:54 ./usr/share/doc/lammps/fix_temp_rescale.html -rw-r--r-- root/root 3177 2018-06-19 10:54 ./usr/share/doc/lammps/fix_temp_rescale_eff.html -rw-r--r-- root/root 7128 2018-06-19 10:54 ./usr/share/doc/lammps/fix_tfmc.html -rw-r--r-- root/root 7810 2018-06-19 10:54 ./usr/share/doc/lammps/fix_thermal_conductivity.html -rw-r--r-- root/root 7743 2018-06-19 10:54 ./usr/share/doc/lammps/fix_ti_spring.html -rw-r--r-- root/root 5593 2018-06-19 10:54 ./usr/share/doc/lammps/fix_tmd.html -rw-r--r-- root/root 15769 2018-06-19 10:54 ./usr/share/doc/lammps/fix_ttm.html -rw-r--r-- root/root 4450 2018-06-19 10:54 ./usr/share/doc/lammps/fix_tune_kspace.html -rw-r--r-- root/root 7865 2018-06-19 10:54 ./usr/share/doc/lammps/fix_vector.html -rw-r--r-- root/root 8322 2018-06-19 10:54 ./usr/share/doc/lammps/fix_viscosity.html -rw-r--r-- root/root 4719 2018-06-19 10:54 ./usr/share/doc/lammps/fix_viscous.html -rw-r--r-- root/root 16172 2018-06-19 10:54 ./usr/share/doc/lammps/fix_wall.html -rw-r--r-- root/root 5138 2018-06-19 10:54 ./usr/share/doc/lammps/fix_wall_ees.html -rw-r--r-- root/root 9186 2018-06-19 10:54 ./usr/share/doc/lammps/fix_wall_gran.html -rw-r--r-- root/root 11398 2018-06-19 10:54 ./usr/share/doc/lammps/fix_wall_gran_region.html -rw-r--r-- root/root 5302 2018-06-19 10:54 ./usr/share/doc/lammps/fix_wall_piston.html -rw-r--r-- root/root 8506 2018-06-19 10:54 ./usr/share/doc/lammps/fix_wall_reflect.html -rw-r--r-- root/root 9179 2018-06-19 10:54 ./usr/share/doc/lammps/fix_wall_region.html -rw-r--r-- root/root 8790 2018-06-19 10:54 ./usr/share/doc/lammps/fix_wall_srd.html -rw-r--r-- root/root 52 2018-06-19 10:54 ./usr/share/doc/lammps/fixes.html -rw-r--r-- root/root 13926 2018-06-19 10:54 ./usr/share/doc/lammps/group.html -rw-r--r-- root/root 2400 2018-06-19 10:54 ./usr/share/doc/lammps/group2ndx.html -rw-r--r-- root/root 8195 2018-06-19 10:54 ./usr/share/doc/lammps/if.html -rw-r--r-- root/root 4863 2018-06-19 10:54 ./usr/share/doc/lammps/improper_class2.html -rw-r--r-- root/root 3997 2018-06-19 10:54 ./usr/share/doc/lammps/improper_coeff.html -rw-r--r-- root/root 3245 2018-06-19 10:54 ./usr/share/doc/lammps/improper_cossq.html -rw-r--r-- root/root 3281 2018-06-19 10:54 ./usr/share/doc/lammps/improper_cvff.html -rw-r--r-- root/root 1825 2018-06-19 10:54 ./usr/share/doc/lammps/improper_distance.html -rw-r--r-- root/root 2819 2018-06-19 10:54 ./usr/share/doc/lammps/improper_fourier.html -rw-r--r-- root/root 3543 2018-06-19 10:54 ./usr/share/doc/lammps/improper_harmonic.html -rw-r--r-- root/root 2773 2018-06-19 10:54 ./usr/share/doc/lammps/improper_hybrid.html -rw-r--r-- root/root 2026 2018-06-19 10:54 ./usr/share/doc/lammps/improper_inversion_harmonic.html -rw-r--r-- root/root 957 2018-06-19 10:54 ./usr/share/doc/lammps/improper_none.html -rw-r--r-- root/root 3704 2018-06-19 10:54 ./usr/share/doc/lammps/improper_ring.html -rw-r--r-- root/root 3954 2018-06-19 10:54 ./usr/share/doc/lammps/improper_style.html -rw-r--r-- root/root 3180 2018-06-19 10:54 ./usr/share/doc/lammps/improper_umbrella.html -rw-r--r-- root/root 1540 2018-06-19 10:54 ./usr/share/doc/lammps/improper_zero.html -rw-r--r-- root/root 62 2018-06-19 10:54 ./usr/share/doc/lammps/impropers.html -rw-r--r-- root/root 1122 2018-06-19 10:54 ./usr/share/doc/lammps/include.html -rw-r--r-- root/root 4873 2018-06-19 10:54 ./usr/share/doc/lammps/info.html -rw-r--r-- root/root 4515 2018-06-19 10:54 ./usr/share/doc/lammps/jump.html -rw-r--r-- root/root 19140 2018-06-19 10:54 ./usr/share/doc/lammps/kspace_modify.html -rw-r--r-- root/root 18955 2018-06-19 10:54 ./usr/share/doc/lammps/kspace_style.html -rw-r--r-- root/root 1033 2018-06-19 10:54 ./usr/share/doc/lammps/label.html -rw-r--r-- root/root 457 2018-06-19 10:54 ./usr/share/doc/lammps/lammps_commands.html -rw-r--r-- root/root 67 2018-06-19 10:54 ./usr/share/doc/lammps/lammps_commands_angle.html -rw-r--r-- root/root 59 2018-06-19 10:54 ./usr/share/doc/lammps/lammps_commands_atc.html -rw-r--r-- root/root 66 2018-06-19 10:54 ./usr/share/doc/lammps/lammps_commands_bond.html -rw-r--r-- root/root 63 2018-06-19 10:54 ./usr/share/doc/lammps/lammps_commands_compute.html -rw-r--r-- root/root 70 2018-06-19 10:54 ./usr/share/doc/lammps/lammps_commands_dihedral.html -rw-r--r-- root/root 59 2018-06-19 10:54 ./usr/share/doc/lammps/lammps_commands_fix.html -rw-r--r-- root/root 70 2018-06-19 10:54 ./usr/share/doc/lammps/lammps_commands_improper.html -rw-r--r-- root/root 68 2018-06-19 10:54 ./usr/share/doc/lammps/lammps_commands_kspace.html -rw-r--r-- root/root 66 2018-06-19 10:54 ./usr/share/doc/lammps/lammps_commands_pair.html -rw-r--r-- root/root 277 2018-06-19 10:54 ./usr/share/doc/lammps/lammps_support.html -rw-r--r-- root/root 190 2018-06-19 10:54 ./usr/share/doc/lammps/lammps_tutorials.html -rw-r--r-- root/root 14285 2018-06-19 10:54 ./usr/share/doc/lammps/lattice.html -rw-r--r-- root/root 1428 2018-06-19 10:54 ./usr/share/doc/lammps/log.html -rw-r--r-- root/root 3483 2018-06-19 10:54 ./usr/share/doc/lammps/manifolds.html -rw-r--r-- root/root 3449 2018-06-19 10:54 ./usr/share/doc/lammps/mass.html -rw-r--r-- root/root 3299 2018-06-19 10:54 ./usr/share/doc/lammps/min_modify.html -rw-r--r-- root/root 4105 2018-06-19 10:54 ./usr/share/doc/lammps/min_style.html -rw-r--r-- root/root 13728 2018-06-19 10:54 ./usr/share/doc/lammps/minimize.html -rw-r--r-- root/root 19644 2018-06-19 10:54 ./usr/share/doc/lammps/molecule.html -rw-r--r-- root/root 21485 2018-06-19 10:54 ./usr/share/doc/lammps/neb.html -rw-r--r-- root/root 11187 2018-06-19 10:54 ./usr/share/doc/lammps/neigh_modify.html -rw-r--r-- root/root 3676 2018-06-19 10:54 ./usr/share/doc/lammps/neighbor.html -rw-r--r-- root/root 2180 2018-06-19 10:54 ./usr/share/doc/lammps/newton.html -rw-r--r-- root/root 5695 2018-06-19 10:54 ./usr/share/doc/lammps/next.html -rw-r--r-- root/root 31983 2018-06-19 10:54 ./usr/share/doc/lammps/package.html -rw-r--r-- root/root 8013 2018-06-19 10:54 ./usr/share/doc/lammps/pair_adp.html -rw-r--r-- root/root 5422 2018-06-19 10:54 ./usr/share/doc/lammps/pair_agni.html -rw-r--r-- root/root 11485 2018-06-19 10:54 ./usr/share/doc/lammps/pair_airebo.html -rw-r--r-- root/root 4890 2018-06-19 10:54 ./usr/share/doc/lammps/pair_awpmd.html -rw-r--r-- root/root 3953 2018-06-19 10:54 ./usr/share/doc/lammps/pair_beck.html -rw-r--r-- root/root 4830 2018-06-19 10:54 ./usr/share/doc/lammps/pair_body.html -rw-r--r-- root/root 482 2018-06-19 10:54 ./usr/share/doc/lammps/pair_body_rounded_polygon.html -rw-r--r-- root/root 17943 2018-06-19 10:54 ./usr/share/doc/lammps/pair_bop.html -rw-r--r-- root/root 9122 2018-06-19 10:54 ./usr/share/doc/lammps/pair_born.html -rw-r--r-- root/root 6031 2018-06-19 10:54 ./usr/share/doc/lammps/pair_brownian.html -rw-r--r-- root/root 8944 2018-06-19 10:54 ./usr/share/doc/lammps/pair_buck.html -rw-r--r-- root/root 6286 2018-06-19 10:54 ./usr/share/doc/lammps/pair_buck6d_coul_gauss.html -rw-r--r-- root/root 7570 2018-06-19 10:54 ./usr/share/doc/lammps/pair_buck_long.html -rw-r--r-- root/root 13423 2018-06-19 10:54 ./usr/share/doc/lammps/pair_charmm.html -rw-r--r-- root/root 7171 2018-06-19 10:54 ./usr/share/doc/lammps/pair_class2.html -rw-r--r-- root/root 6407 2018-06-19 10:54 ./usr/share/doc/lammps/pair_coeff.html -rw-r--r-- root/root 8550 2018-06-19 10:54 ./usr/share/doc/lammps/pair_colloid.html -rw-r--r-- root/root 8673 2018-06-19 10:54 ./usr/share/doc/lammps/pair_comb.html -rw-r--r-- root/root 14758 2018-06-19 10:54 ./usr/share/doc/lammps/pair_coul.html -rw-r--r-- root/root 4332 2018-06-19 10:54 ./usr/share/doc/lammps/pair_coul_diel.html -rw-r--r-- root/root 3286 2018-06-19 10:54 ./usr/share/doc/lammps/pair_coul_shield.html -rw-r--r-- root/root 5248 2018-06-19 10:54 ./usr/share/doc/lammps/pair_cs.html -rw-r--r-- root/root 13443 2018-06-19 10:54 ./usr/share/doc/lammps/pair_dipole.html -rw-r--r-- root/root 9308 2018-06-19 10:54 ./usr/share/doc/lammps/pair_dpd.html -rw-r--r-- root/root 7929 2018-06-19 10:54 ./usr/share/doc/lammps/pair_dpd_fdt.html -rw-r--r-- root/root 5892 2018-06-19 10:54 ./usr/share/doc/lammps/pair_dsmc.html -rw-r--r-- root/root 20457 2018-06-19 10:54 ./usr/share/doc/lammps/pair_eam.html -rw-r--r-- root/root 6603 2018-06-19 10:54 ./usr/share/doc/lammps/pair_edip.html -rw-r--r-- root/root 15229 2018-06-19 10:54 ./usr/share/doc/lammps/pair_eff.html -rw-r--r-- root/root 7442 2018-06-19 10:54 ./usr/share/doc/lammps/pair_eim.html -rw-r--r-- root/root 8381 2018-06-19 10:54 ./usr/share/doc/lammps/pair_exp6_rx.html -rw-r--r-- root/root 940 2018-06-19 10:54 ./usr/share/doc/lammps/pair_extep.html -rw-r--r-- root/root 7408 2018-06-19 10:54 ./usr/share/doc/lammps/pair_gauss.html -rw-r--r-- root/root 11020 2018-06-19 10:54 ./usr/share/doc/lammps/pair_gayberne.html -rw-r--r-- root/root 13366 2018-06-19 10:54 ./usr/share/doc/lammps/pair_gran.html -rw-r--r-- root/root 6475 2018-06-19 10:54 ./usr/share/doc/lammps/pair_gromacs.html -rw-r--r-- root/root 4716 2018-06-19 10:54 ./usr/share/doc/lammps/pair_gw.html -rw-r--r-- root/root 10633 2018-06-19 10:54 ./usr/share/doc/lammps/pair_hbond_dreiding.html -rw-r--r-- root/root 18751 2018-06-19 10:54 ./usr/share/doc/lammps/pair_hybrid.html -rw-r--r-- root/root 5381 2018-06-19 10:54 ./usr/share/doc/lammps/pair_ilp_graphene_hbn.html -rw-r--r-- root/root 5588 2018-06-19 10:54 ./usr/share/doc/lammps/pair_kim.html -rw-r--r-- root/root 3826 2018-06-19 10:54 ./usr/share/doc/lammps/pair_kolmogorov_crespi_full.html -rw-r--r-- root/root 2760 2018-06-19 10:54 ./usr/share/doc/lammps/pair_kolmogorov_crespi_z.html -rw-r--r-- root/root 3803 2018-06-19 10:54 ./usr/share/doc/lammps/pair_lcbop.html -rw-r--r-- root/root 6541 2018-06-19 10:54 ./usr/share/doc/lammps/pair_line_lj.html -rw-r--r-- root/root 4961 2018-06-19 10:54 ./usr/share/doc/lammps/pair_list.html -rw-r--r-- root/root 16243 2018-06-19 10:54 ./usr/share/doc/lammps/pair_lj.html -rw-r--r-- root/root 4039 2018-06-19 10:54 ./usr/share/doc/lammps/pair_lj96.html -rw-r--r-- root/root 5127 2018-06-19 10:54 ./usr/share/doc/lammps/pair_lj_cubic.html -rw-r--r-- root/root 4298 2018-06-19 10:54 ./usr/share/doc/lammps/pair_lj_expand.html -rw-r--r-- root/root 10922 2018-06-19 10:54 ./usr/share/doc/lammps/pair_lj_long.html -rw-r--r-- root/root 4900 2018-06-19 10:54 ./usr/share/doc/lammps/pair_lj_smooth.html -rw-r--r-- root/root 4357 2018-06-19 10:54 ./usr/share/doc/lammps/pair_lj_smooth_linear.html -rw-r--r-- root/root 13435 2018-06-19 10:54 ./usr/share/doc/lammps/pair_lj_soft.html -rw-r--r-- root/root 10505 2018-06-19 10:54 ./usr/share/doc/lammps/pair_lubricate.html -rw-r--r-- root/root 10080 2018-06-19 10:54 ./usr/share/doc/lammps/pair_lubricateU.html -rw-r--r-- root/root 5706 2018-06-19 10:54 ./usr/share/doc/lammps/pair_mdf.html -rw-r--r-- root/root 18951 2018-06-19 10:54 ./usr/share/doc/lammps/pair_meam.html -rw-r--r-- root/root 7119 2018-06-19 10:54 ./usr/share/doc/lammps/pair_meam_spline.html -rw-r--r-- root/root 5584 2018-06-19 10:54 ./usr/share/doc/lammps/pair_meam_sw_spline.html -rw-r--r-- root/root 11849 2018-06-19 10:54 ./usr/share/doc/lammps/pair_meso.html -rw-r--r-- root/root 11019 2018-06-19 10:54 ./usr/share/doc/lammps/pair_mgpt.html -rw-r--r-- root/root 3406 2018-06-19 10:54 ./usr/share/doc/lammps/pair_mie.html -rw-r--r-- root/root 13819 2018-06-19 10:54 ./usr/share/doc/lammps/pair_modify.html -rw-r--r-- root/root 2483 2018-06-19 10:54 ./usr/share/doc/lammps/pair_momb.html -rw-r--r-- root/root 6087 2018-06-19 10:54 ./usr/share/doc/lammps/pair_morse.html -rw-r--r-- root/root 8633 2018-06-19 10:54 ./usr/share/doc/lammps/pair_multi_lucy.html -rw-r--r-- root/root 11439 2018-06-19 10:54 ./usr/share/doc/lammps/pair_multi_lucy_rx.html -rw-r--r-- root/root 5307 2018-06-19 10:54 ./usr/share/doc/lammps/pair_nb3b_harmonic.html -rw-r--r-- root/root 7066 2018-06-19 10:54 ./usr/share/doc/lammps/pair_nm.html -rw-r--r-- root/root 1541 2018-06-19 10:54 ./usr/share/doc/lammps/pair_none.html -rw-r--r-- root/root 6422 2018-06-19 10:54 ./usr/share/doc/lammps/pair_oxdna.html -rw-r--r-- root/root 7127 2018-06-19 10:54 ./usr/share/doc/lammps/pair_oxdna2.html -rw-r--r-- root/root 8238 2018-06-19 10:54 ./usr/share/doc/lammps/pair_peri.html -rw-r--r-- root/root 10129 2018-06-19 10:54 ./usr/share/doc/lammps/pair_polymorphic.html -rw-r--r-- root/root 9237 2018-06-19 10:54 ./usr/share/doc/lammps/pair_python.html -rw-r--r-- root/root 4634 2018-06-19 10:54 ./usr/share/doc/lammps/pair_quip.html -rw-r--r-- root/root 10201 2018-06-19 10:54 ./usr/share/doc/lammps/pair_reax.html -rw-r--r-- root/root 16980 2018-06-19 10:54 ./usr/share/doc/lammps/pair_reaxc.html -rw-r--r-- root/root 10855 2018-06-19 10:54 ./usr/share/doc/lammps/pair_resquared.html -rw-r--r-- root/root 6575 2018-06-19 10:54 ./usr/share/doc/lammps/pair_sdk.html -rw-r--r-- root/root 1834 2018-06-19 10:54 ./usr/share/doc/lammps/pair_smd_hertz.html -rw-r--r-- root/root 2550 2018-06-19 10:54 ./usr/share/doc/lammps/pair_smd_tlsph.html -rw-r--r-- root/root 1961 2018-06-19 10:54 ./usr/share/doc/lammps/pair_smd_triangulated_surface.html -rw-r--r-- root/root 3166 2018-06-19 10:54 ./usr/share/doc/lammps/pair_smd_ulsph.html -rw-r--r-- root/root 14264 2018-06-19 10:54 ./usr/share/doc/lammps/pair_smtbq.html -rw-r--r-- root/root 9357 2018-06-19 10:54 ./usr/share/doc/lammps/pair_snap.html -rw-r--r-- root/root 5577 2018-06-19 10:54 ./usr/share/doc/lammps/pair_soft.html -rw-r--r-- root/root 2091 2018-06-19 10:54 ./usr/share/doc/lammps/pair_sph_heatconduction.html -rw-r--r-- root/root 2497 2018-06-19 10:54 ./usr/share/doc/lammps/pair_sph_idealgas.html -rw-r--r-- root/root 2619 2018-06-19 10:54 ./usr/share/doc/lammps/pair_sph_lj.html -rw-r--r-- root/root 2037 2018-06-19 10:54 ./usr/share/doc/lammps/pair_sph_rhosum.html -rw-r--r-- root/root 2609 2018-06-19 10:54 ./usr/share/doc/lammps/pair_sph_taitwater.html -rw-r--r-- root/root 2564 2018-06-19 10:54 ./usr/share/doc/lammps/pair_sph_taitwater_morris.html -rw-r--r-- root/root 6993 2018-06-19 10:54 ./usr/share/doc/lammps/pair_srp.html -rw-r--r-- root/root 16165 2018-06-19 10:54 ./usr/share/doc/lammps/pair_style.html -rw-r--r-- root/root 9467 2018-06-19 10:54 ./usr/share/doc/lammps/pair_sw.html -rw-r--r-- root/root 12898 2018-06-19 10:54 ./usr/share/doc/lammps/pair_table.html -rw-r--r-- root/root 12515 2018-06-19 10:54 ./usr/share/doc/lammps/pair_table_rx.html -rw-r--r-- root/root 11042 2018-06-19 10:54 ./usr/share/doc/lammps/pair_tersoff.html -rw-r--r-- root/root 8286 2018-06-19 10:54 ./usr/share/doc/lammps/pair_tersoff_mod.html -rw-r--r-- root/root 11898 2018-06-19 10:54 ./usr/share/doc/lammps/pair_tersoff_zbl.html -rw-r--r-- root/root 8428 2018-06-19 10:54 ./usr/share/doc/lammps/pair_thole.html -rw-r--r-- root/root 4869 2018-06-19 10:54 ./usr/share/doc/lammps/pair_tri_lj.html -rw-r--r-- root/root 5971 2018-06-19 10:54 ./usr/share/doc/lammps/pair_ufm.html -rw-r--r-- root/root 11286 2018-06-19 10:54 ./usr/share/doc/lammps/pair_vashishta.html -rw-r--r-- root/root 3306 2018-06-19 10:54 ./usr/share/doc/lammps/pair_write.html -rw-r--r-- root/root 3891 2018-06-19 10:54 ./usr/share/doc/lammps/pair_yukawa.html -rw-r--r-- root/root 6301 2018-06-19 10:54 ./usr/share/doc/lammps/pair_yukawa_colloid.html -rw-r--r-- root/root 5800 2018-06-19 10:54 ./usr/share/doc/lammps/pair_zbl.html -rw-r--r-- root/root 3248 2018-06-19 10:54 ./usr/share/doc/lammps/pair_zero.html -rw-r--r-- root/root 58 2018-06-19 10:54 ./usr/share/doc/lammps/pairs.html -rw-r--r-- root/root 2956 2018-06-19 10:54 ./usr/share/doc/lammps/partition.html -rw-r--r-- root/root 16114 2018-06-19 10:54 ./usr/share/doc/lammps/prd.html -rw-r--r-- root/root 3477 2018-06-19 10:54 ./usr/share/doc/lammps/print.html -rw-r--r-- root/root 16512 2018-06-19 10:54 ./usr/share/doc/lammps/processors.html -rw-r--r-- root/root 24034 2018-06-19 10:54 ./usr/share/doc/lammps/python.html -rw-r--r-- root/root 1276 2018-06-19 10:54 ./usr/share/doc/lammps/quit.html -rw-r--r-- root/root 55319 2018-06-19 10:54 ./usr/share/doc/lammps/read_data.html -rw-r--r-- root/root 17694 2018-06-19 10:54 ./usr/share/doc/lammps/read_dump.html -rw-r--r-- root/root 14712 2018-06-19 10:54 ./usr/share/doc/lammps/read_restart.html -rw-r--r-- root/root 20637 2018-06-19 10:54 ./usr/share/doc/lammps/region.html -rw-r--r-- root/root 4602 2018-06-19 10:54 ./usr/share/doc/lammps/replicate.html -rw-r--r-- root/root 10256 2018-06-19 10:54 ./usr/share/doc/lammps/rerun.html -rw-r--r-- root/root 2175 2018-06-19 10:54 ./usr/share/doc/lammps/reset_ids.html -rw-r--r-- root/root 2328 2018-06-19 10:54 ./usr/share/doc/lammps/reset_timestep.html -rw-r--r-- root/root 7948 2018-06-19 10:54 ./usr/share/doc/lammps/restart.html -rw-r--r-- root/root 9083 2018-06-19 10:54 ./usr/share/doc/lammps/run.html -rw-r--r-- root/root 14590 2018-06-19 10:54 ./usr/share/doc/lammps/run_style.html -rw-r--r-- root/root 26217 2018-06-19 10:54 ./usr/share/doc/lammps/set.html -rw-r--r-- root/root 3861 2018-06-19 10:54 ./usr/share/doc/lammps/shell.html -rw-r--r-- root/root 12027 2018-06-19 10:54 ./usr/share/doc/lammps/special_bonds.html -rw-r--r-- root/root 4869 2018-06-19 10:54 ./usr/share/doc/lammps/suffix.html -rw-r--r-- root/root 15929 2018-06-19 10:54 ./usr/share/doc/lammps/tad.html -rw-r--r-- root/root 6778 2018-06-19 10:54 ./usr/share/doc/lammps/temper.html -rw-r--r-- root/root 4735 2018-06-19 10:54 ./usr/share/doc/lammps/temper_grem.html -rw-r--r-- root/root 2735 2018-06-19 10:54 ./usr/share/doc/lammps/temper_npt.html -rw-r--r-- root/root 2080 2018-06-19 10:54 ./usr/share/doc/lammps/thermo.html -rw-r--r-- root/root 9751 2018-06-19 10:54 ./usr/share/doc/lammps/thermo_modify.html -rw-r--r-- root/root 21522 2018-06-19 10:54 ./usr/share/doc/lammps/thermo_style.html -rw-r--r-- root/root 6078 2018-06-19 10:54 ./usr/share/doc/lammps/timer.html -rw-r--r-- root/root 2002 2018-06-19 10:54 ./usr/share/doc/lammps/timestep.html -rw-r--r-- root/root 6689 2018-06-19 10:54 ./usr/share/doc/lammps/tutorial_bash_on_windows.html -rw-r--r-- root/root 21074 2018-06-19 10:54 ./usr/share/doc/lammps/tutorial_drude.html -rw-r--r-- root/root 16299 2018-06-19 10:54 ./usr/share/doc/lammps/tutorial_github.html -rw-r--r-- root/root 15178 2018-06-19 10:54 ./usr/share/doc/lammps/tutorial_pylammps.html -rw-r--r-- root/root 56 2018-06-19 10:54 ./usr/share/doc/lammps/tutorials.html -rw-r--r-- root/root 866 2018-06-19 10:54 ./usr/share/doc/lammps/uncompute.html -rw-r--r-- root/root 711 2018-06-19 10:54 ./usr/share/doc/lammps/undump.html -rw-r--r-- root/root 806 2018-06-19 10:54 ./usr/share/doc/lammps/unfix.html -rw-r--r-- root/root 8435 2018-06-19 10:54 ./usr/share/doc/lammps/units.html -rw-r--r-- root/root 70435 2018-06-19 10:54 ./usr/share/doc/lammps/variable.html -rw-r--r-- root/root 12817 2018-06-19 10:54 ./usr/share/doc/lammps/velocity.html -rw-r--r-- root/root 1373 2018-06-19 10:54 ./usr/share/doc/lammps/write_coeff.html -rw-r--r-- root/root 5962 2018-06-19 10:54 ./usr/share/doc/lammps/write_data.html -rw-r--r-- root/root 4339 2018-06-19 10:54 ./usr/share/doc/lammps/write_dump.html -rw-r--r-- root/root 5396 2018-06-19 10:54 ./usr/share/doc/lammps/write_restart.html lammps_0~20180510.gitaa1d815fe-4ubuntu1_amd64.deb ------------------------------------------------- new debian package, version 2.0. size 4008224 bytes: control archive=1124 bytes. 1206 bytes, 23 lines control 263 bytes, 4 lines md5sums Package: lammps Version: 0~20180510.gitaa1d815fe-4ubuntu1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 16551 Depends: libc6 (>= 2.17), libfftw3-double3 (>= 3.3.5), libgcc1 (>= 1:4.0), libgomp1 (>= 4.9), libjpeg8 (>= 8c), libopenmpi3, libstdc++6 (>= 5.2), mpi-default-bin Recommends: lammps-doc Section: science Priority: optional Homepage: http://lammps.sandia.gov/ Description: Molecular Dynamics Simulator LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. . LAMMPS has potentials for soft materials (biomolecules, polymers) and solid-state materials (metals, semiconductors) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale. . LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. The code is designed to be easy to modify or extend with new functionality. drwxr-xr-x root/root 0 2018-06-19 10:54 ./ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/bin/ -rwxr-xr-x root/root 16917648 2018-06-19 10:54 ./usr/bin/lammps drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/doc/lammps/ -rw-r--r-- root/root 978 2018-06-19 10:54 ./usr/share/doc/lammps/changelog.Debian.gz -rw-r--r-- root/root 15474 2016-11-12 06:38 ./usr/share/doc/lammps/copyright drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/man/ drwxr-xr-x root/root 0 2018-06-19 10:54 ./usr/share/man/man2/ -rw-r--r-- root/root 767 2018-06-19 10:54 ./usr/share/man/man2/lammps.2012-02-23.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 875936 Build-Time: 308 Distribution: cosmic-proposed Host Architecture: amd64 Install-Time: 28 Job: lammps_0~20180510.gitaa1d815fe-4ubuntu1.dsc Machine Architecture: amd64 Package: lammps Package-Time: 344 Source-Version: 0~20180510.gitaa1d815fe-4ubuntu1 Space: 875936 Status: successful Version: 0~20180510.gitaa1d815fe-4ubuntu1 -------------------------------------------------------------------------------- Finished at 20180619-1102 Build needed 00:05:44, 875936k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15030946 Scanning for processes to kill in build PACKAGEBUILD-15030946